Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844830 | XP_003613593.2 | 78.873 | 71 | 15 | 0 | 1 | 71 | 1 | 71 | 1.31e-22 | 110 |
| Msa0844830 | XP_003613593.2 | 95.174 | 373 | 17 | 1 | 79 | 451 | 1 | 372 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844830 | G7K9S9 | 78.873 | 71 | 15 | 0 | 1 | 71 | 1 | 71 | 6.27e-23 | 110 |
| Msa0844830 | G7K9S9 | 95.174 | 373 | 17 | 1 | 79 | 451 | 1 | 372 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081660 | Msa0844830 | 0.836171 | 1.094294e-56 | -8.615850e-47 |
| Msa0657120 | Msa0844830 | 0.813536 | 2.435653e-51 | -8.615850e-47 |
| Msa0701100 | Msa0844830 | 0.818008 | 2.452716e-52 | -8.615850e-47 |
| Msa0724780 | Msa0844830 | 0.913157 | 8.521161e-84 | -8.615850e-47 |
| Msa0127870 | Msa0844830 | 0.828589 | 8.266393e-55 | -8.615850e-47 |
| Msa0174010 | Msa0844830 | 0.821161 | 4.676684e-53 | -8.615850e-47 |
| Msa0196670 | Msa0844830 | 0.800652 | 1.303547e-48 | -8.615850e-47 |
| Msa0203110 | Msa0844830 | 0.879265 | 1.435276e-69 | -8.615850e-47 |
| Msa0390550 | Msa0844830 | 0.825213 | 5.299236e-54 | -8.615850e-47 |
| Msa0246250 | Msa0844830 | 0.811447 | 6.970521e-51 | -8.615850e-47 |
| Msa0276100 | Msa0844830 | 0.811274 | 7.598413e-51 | -8.615850e-47 |
| Msa0284820 | Msa0844830 | 0.810813 | 9.563208e-51 | -8.615850e-47 |
| Msa0547440 | Msa0844830 | 0.856103 | 4.032892e-62 | -8.615850e-47 |
| Msa0844830 | Msa1023180 | 0.802248 | 6.140097e-49 | -8.615850e-47 |
| Msa0844830 | Msa1024710 | 0.805467 | 1.316448e-49 | -8.615850e-47 |
| Msa0844830 | Msa1070520 | 0.825699 | 4.065523e-54 | -8.615850e-47 |
| Msa0844830 | Msa1150710 | 0.805396 | 1.362040e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844830 | MtrunA17_Chr5g0416021 | 94.370 | 373 | 20 | 1 | 79 | 451 | 1 | 372 | 0.0 | 703 |
| Msa0844830 | MtrunA17_Chr5g0416021 | 87.324 | 71 | 9 | 0 | 1 | 71 | 1 | 71 | 1.96e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844830 | AT1G07040.1 | 65.659 | 364 | 110 | 3 | 99 | 448 | 6 | 368 | 4.07e-172 | 488 |
| Msa0844830 | AT1G27020.1 | 54.515 | 299 | 132 | 3 | 145 | 441 | 8 | 304 | 1.32e-115 | 342 |
| Msa0844830 | AT1G27030.1 | 51.839 | 299 | 140 | 3 | 145 | 441 | 8 | 304 | 7.21e-114 | 337 |
Find 99 sgRNAs with CRISPR-Local
Find 468 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTGCTGATTCACTTTC+TGG | 0.060373 | 5_4:-23458030 | Msa0844830:CDS |
| TGGTACAATATTCCACAATT+TGG | 0.191224 | 5_4:+23460101 | None:intergenic |
| CAGTTATACCATCAGAAAAT+TGG | 0.235125 | 5_4:+23456325 | None:intergenic |
| CATCTTGCATTCAGGACATT+TGG | 0.268203 | 5_4:-23458267 | Msa0844830:CDS |
| TCCTACAGCAAAGGCAATAT+TGG | 0.277872 | 5_4:-23458331 | Msa0844830:CDS |
| CGAGAGGAGCTGAGATTTCC+AGG | 0.292099 | 5_4:-23458081 | Msa0844830:CDS |
| ACCAAACATAATTTGTCTTT+AGG | 0.299263 | 5_4:-23460069 | Msa0844830:CDS |
| TCATGCAGTATACACATTAT+TGG | 0.310652 | 5_4:+23455640 | None:intergenic |
| ACAAGACACAGACATGTTTC+TGG | 0.311157 | 5_4:+23460032 | None:intergenic |
| TGATTATAGGTGAATGGTTA+TGG | 0.311517 | 5_4:-23458150 | Msa0844830:intron |
| AGTTAGCAGAGTAGGCTCTT+AGG | 0.314244 | 5_4:-23455775 | Msa0844830:exon |
| ATCTTGCATTCAGGACATTT+GGG | 0.316643 | 5_4:-23458266 | Msa0844830:CDS |
| TGTAACTACTCATCAGAAAA+TGG | 0.323599 | 5_4:-23463213 | Msa0844830:CDS |
| GCTATGATCATCTTGCATTC+AGG | 0.323942 | 5_4:-23458275 | Msa0844830:CDS |
| CCAAGCTTCAAGAATACAAT+TGG | 0.326157 | 5_4:+23455676 | None:intergenic |
| CTGCTACAGTTGAACTTTGC+TGG | 0.329869 | 5_4:+23456361 | None:intergenic |
| TGTACGTACTCGTCAGAAAA+TGG | 0.331480 | 5_4:-23460012 | Msa0844830:CDS |
| GGTACAATATTCCACAATTT+GGG | 0.336047 | 5_4:+23460102 | None:intergenic |
| TGGTACAATATTACACAATC+TGG | 0.336867 | 5_4:+23463299 | None:intergenic |
| CTCTCAGGGATCATCAATTC+AGG | 0.354944 | 5_4:-23463184 | Msa0844830:intron |
| TCCACCAAACATTTGTGTTT+AGG | 0.372643 | 5_4:-23463270 | Msa0844830:CDS |
| CTTTGCTGGAGAAGGCCATC+AGG | 0.378237 | 5_4:+23456375 | None:intergenic |
| ACCTAAAGACAAATTATGTT+TGG | 0.378724 | 5_4:+23460068 | None:intergenic |
| CTCTCATGGATCAACAATTC+AGG | 0.386057 | 5_4:-23459983 | Msa0844830:intron |
| AACAAGTTTCTTGAGGAGAA+TGG | 0.386155 | 5_4:-23456798 | Msa0844830:CDS |
| AATATTACACAATCTGGGTT+TGG | 0.397577 | 5_4:+23463305 | None:intergenic |
| ATATTCAGAGTTTCAACAAT+TGG | 0.398259 | 5_4:-23457019 | Msa0844830:CDS |
| TACAGCTCTTGCGAGTTCAT+TGG | 0.400082 | 5_4:-23457067 | Msa0844830:CDS |
| TGTATACTGCATGATTCAAT+TGG | 0.400535 | 5_4:-23455631 | Msa0844830:three_prime_UTR |
| TCACTTTCTGGCAGTGGCAG+TGG | 0.415896 | 5_4:-23458018 | Msa0844830:CDS |
| CCAATTGTATTCTTGAAGCT+TGG | 0.417147 | 5_4:-23455676 | Msa0844830:three_prime_UTR |
| GCTGCGTGGACGCTAGTAAA+TGG | 0.417737 | 5_4:-23456891 | Msa0844830:CDS |
| TGCACTTGATTATAGGTGAA+TGG | 0.419496 | 5_4:-23458156 | Msa0844830:intron |
| ACAGCTCTTGCGAGTTCATT+GGG | 0.421750 | 5_4:-23457066 | Msa0844830:CDS |
| AGAAAATGGATCTCACTCTC+AGG | 0.440202 | 5_4:-23463199 | Msa0844830:CDS |
| TAAGCCTAAACACAAATGTT+TGG | 0.446904 | 5_4:+23463266 | None:intergenic |
| CCATTTCCAGTGAGCCCTGA+TGG | 0.447937 | 5_4:-23456390 | Msa0844830:intron |
| TACTCTGCTAACTTGTTCCT+TGG | 0.449219 | 5_4:+23455785 | None:intergenic |
| CACCAACATACCTGAGTTTG+CGG | 0.454845 | 5_4:+23457937 | None:intergenic |
| GCTGATTCACTTTCTGGCAG+TGG | 0.461381 | 5_4:-23458024 | Msa0844830:CDS |
| CTGTAGAAAACATGTTTAAG+TGG | 0.461563 | 5_4:+23460187 | None:intergenic |
| CCTCAAAACCATCCCTCCTA+TGG | 0.467105 | 5_4:+23455841 | None:intergenic |
| AGGAAATACACAGAATCATC+TGG | 0.472242 | 5_4:-23457105 | Msa0844830:CDS |
| GGCAGTGGCAGTGGCATGAA+TGG | 0.474158 | 5_4:-23458009 | Msa0844830:CDS |
| TAAAGACAAATTATGTTTGG+TGG | 0.477809 | 5_4:+23460071 | None:intergenic |
| AATGTTCTCTCTTCCTCAAA+GGG | 0.484233 | 5_4:+23455705 | None:intergenic |
| TCGGCTGAAAACTCATTTGA+AGG | 0.484819 | 5_4:-23456835 | Msa0844830:CDS |
| CAGTTGAACTTTGCTGGAGA+AGG | 0.500485 | 5_4:+23456367 | None:intergenic |
| TGTTGAAACTCTGAATATGA+TGG | 0.503190 | 5_4:+23457024 | None:intergenic |
| TACACAGAATCATCTGGTAA+TGG | 0.505750 | 5_4:-23457099 | Msa0844830:CDS |
| ATGGAATTGACTCCTTGGCT+AGG | 0.510985 | 5_4:-23458131 | Msa0844830:CDS |
| AAGGAACAAGTTAGCAGAGT+AGG | 0.514727 | 5_4:-23455783 | Msa0844830:CDS |
| GCCTAAACACAAATGTTTGG+TGG | 0.515216 | 5_4:+23463269 | None:intergenic |
| AAATGTTCTCTCTTCCTCAA+AGG | 0.516943 | 5_4:+23455704 | None:intergenic |
| AGACATGTTTCTGGCTGAAG+TGG | 0.521479 | 5_4:+23460041 | None:intergenic |
| TGCAAGATGATCATAGCATA+AGG | 0.522407 | 5_4:+23458281 | None:intergenic |
| TCCAATATTGCCTTTGCTGT+AGG | 0.524792 | 5_4:+23458330 | None:intergenic |
| TCAGATGAGTCCGCAAACTC+AGG | 0.526131 | 5_4:-23457947 | Msa0844830:intron |
| AGACATGTTTCTTGATGAAG+TGG | 0.528083 | 5_4:+23463242 | None:intergenic |
| AAATCAAATACACACACATC+GGG | 0.534598 | 5_4:-23455569 | Msa0844830:three_prime_UTR |
| AAACTTGAACAAGTTTCTTG+AGG | 0.535175 | 5_4:-23456805 | Msa0844830:CDS |
| AAAGAGTTCCATAGGAGGGA+TGG | 0.537994 | 5_4:-23455849 | Msa0844830:CDS |
| GGATTCAGATTGAATTCTGA+AGG | 0.537995 | 5_4:-23456777 | Msa0844830:CDS |
| GGTACAATATTACACAATCT+GGG | 0.539783 | 5_4:+23463300 | None:intergenic |
| CAAGCTTCAAGAATACAATT+GGG | 0.541626 | 5_4:+23455677 | None:intergenic |
| ACGCTCTGCAAATTCTATGT+AGG | 0.543289 | 5_4:+23456287 | None:intergenic |
| CAGAGTTTCAACAATTGGCA+AGG | 0.544684 | 5_4:-23457014 | Msa0844830:intron |
| GTATACTGCATGATTCAATT+GGG | 0.555924 | 5_4:-23455630 | Msa0844830:three_prime_UTR |
| TGGTTATGGAATTGACTCCT+TGG | 0.557105 | 5_4:-23458136 | Msa0844830:CDS |
| GAAAATGGATCACACTCTCA+TGG | 0.560780 | 5_4:-23459997 | Msa0844830:CDS |
| GTTCATTGGGACATTTAACA+TGG | 0.566621 | 5_4:-23457053 | Msa0844830:CDS |
| TAGCAGAGTAGGCTCTTAGG+AGG | 0.569184 | 5_4:-23455772 | Msa0844830:exon |
| GAAAATGGATCTCACTCTCA+GGG | 0.569752 | 5_4:-23463198 | Msa0844830:CDS |
| TTATGTTTGGTGGAAGATGA+TGG | 0.570831 | 5_4:+23460081 | None:intergenic |
| AAATGTTTGGTGGAAGAAGA+TGG | 0.574964 | 5_4:+23463279 | None:intergenic |
| CTGCCAGAAAGTGAATCAGC+AGG | 0.576143 | 5_4:+23458027 | None:intergenic |
| AAAATCAAATACACACACAT+CGG | 0.580786 | 5_4:-23455570 | Msa0844830:three_prime_UTR |
| TTTGCTGGAGAAGGCCATCA+GGG | 0.588970 | 5_4:+23456376 | None:intergenic |
| TGTTCTCGACAGAGTGAACA+AGG | 0.590655 | 5_4:+23458307 | None:intergenic |
| GATCTTTGAGAGCACGTCCA+AGG | 0.590833 | 5_4:-23455802 | Msa0844830:CDS |
| GATTAAAGAGTTCCATAGGA+GGG | 0.598200 | 5_4:-23455853 | Msa0844830:CDS |
| GCAAATTCTATGTAGGAGCA+TGG | 0.600668 | 5_4:+23456294 | None:intergenic |
| TCTGAAGGAGGAGTATTGAA+AGG | 0.600695 | 5_4:-23456762 | Msa0844830:intron |
| AACAGATTAAAGAGTTCCAT+AGG | 0.601674 | 5_4:-23455857 | Msa0844830:intron |
| ATGTCACTATTTCCACTCAT+CGG | 0.604585 | 5_4:-23456854 | Msa0844830:CDS |
| GTTGCGTATAGCCATAGTCC+AGG | 0.608729 | 5_4:+23458103 | None:intergenic |
| GTAGTATATGTACATGATCA+CGG | 0.614950 | 5_4:+23455732 | None:intergenic |
| GAACAGAAATCCTACAGCAA+AGG | 0.626638 | 5_4:-23458340 | Msa0844830:CDS |
| TCTTGCATTCAGGACATTTG+GGG | 0.627700 | 5_4:-23458265 | Msa0844830:intron |
| TTCAGATTGAATTCTGAAGG+AGG | 0.628599 | 5_4:-23456774 | Msa0844830:CDS |
| TTCATTGGGACATTTAACAT+GGG | 0.633802 | 5_4:-23457052 | Msa0844830:CDS |
| ATCTTACAAAGAGAGATGAA+AGG | 0.637196 | 5_4:+23463339 | None:intergenic |
| AGATTAAAGAGTTCCATAGG+AGG | 0.638002 | 5_4:-23455854 | Msa0844830:CDS |
| GAGAGGAGCTGAGATTTCCA+GGG | 0.649357 | 5_4:-23458080 | Msa0844830:CDS |
| ATGCTGCTTACTTCTGTGTG+AGG | 0.665830 | 5_4:+23456237 | None:intergenic |
| CTATGGCTATACGCAACGAG+AGG | 0.700616 | 5_4:-23458097 | Msa0844830:CDS |
| CCAGAAAGTGAATCAGCAGG+AGG | 0.702797 | 5_4:+23458030 | None:intergenic |
| GATGAGTGGAAATAGTGACA+TGG | 0.720372 | 5_4:+23456856 | None:intergenic |
| GAGAGAGTGAGTATGCTGCG+TGG | 0.746670 | 5_4:-23456905 | Msa0844830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATAGTTTATATTTAATT+AGG | + | chr5_4:23456752-23456771 | None:intergenic | 10.0% |
| !! | TTAGAACTTTAAATTTAAAA+GGG | + | chr5_4:23462323-23462342 | None:intergenic | 10.0% |
| !!! | ATACATGTAAACAATTTTTT+GGG | + | chr5_4:23455914-23455933 | None:intergenic | 15.0% |
| !!! | AAAATTAGGAATTTGATTTT+TGG | - | chr5_4:23455944-23455963 | Msa0844830:intron | 15.0% |
| !! | TGATAATAAATGAATTGATT+TGG | - | chr5_4:23456051-23456070 | Msa0844830:intron | 15.0% |
| !!! | TTAAACTTTTAGAATCAATT+TGG | - | chr5_4:23456264-23456283 | Msa0844830:CDS | 15.0% |
| !! | TTTCTTAGTAGAAAATAAAA+TGG | + | chr5_4:23456780-23456799 | None:intergenic | 15.0% |
| !! | TTTACTATTATTGTCTATAA+AGG | + | chr5_4:23457320-23457339 | None:intergenic | 15.0% |
| !!! | ATTAGTTGTATTGATTTTAA+TGG | - | chr5_4:23457456-23457475 | Msa0844830:intron | 15.0% |
| !! | TGTATGAAATTCAATAAATA+AGG | - | chr5_4:23457539-23457558 | Msa0844830:intron | 15.0% |
| !! | GTATGAAATTCAATAAATAA+GGG | - | chr5_4:23457540-23457559 | Msa0844830:intron | 15.0% |
| !!! | AATAAATAAGGGTATAATAA+TGG | - | chr5_4:23457551-23457570 | Msa0844830:intron | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAA+TGG | - | chr5_4:23456690-23456709 | Msa0844830:intron | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAA+TGG | - | chr5_4:23456690-23456709 | Msa0844830:intron | 15.0% |
| !! | TAAACGAAAATACAATAAAA+TGG | - | chr5_4:23457768-23457787 | Msa0844830:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr5_4:23458285-23458304 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr5_4:23458284-23458303 | None:intergenic | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr5_4:23458028-23458047 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr5_4:23458063-23458082 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr5_4:23458194-23458213 | Msa0844830:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr5_4:23458284-23458303 | Msa0844830:CDS | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr5_4:23458285-23458304 | Msa0844830:CDS | 15.0% |
| !! | AACTTAGAACATATAATTAA+GGG | + | chr5_4:23458359-23458378 | None:intergenic | 15.0% |
| !! | AAACTTAGAACATATAATTA+AGG | + | chr5_4:23458360-23458379 | None:intergenic | 15.0% |
| !!! | CAATATAATGTTTTGTTAAA+AGG | - | chr5_4:23461361-23461380 | Msa0844830:intron | 15.0% |
| !! | TTATTCCAAAATTTGAAAAT+TGG | + | chr5_4:23461442-23461461 | None:intergenic | 15.0% |
| !! | CTTAGAACTTTAAATTTAAA+AGG | + | chr5_4:23462324-23462343 | None:intergenic | 15.0% |
| !!! | CATACATGTAAACAATTTTT+TGG | + | chr5_4:23455915-23455934 | None:intergenic | 20.0% |
| !! | CAAAAAATTGTTTACATGTA+TGG | - | chr5_4:23455913-23455932 | Msa0844830:intron | 20.0% |
| !! | GTATGGATTTGAAAAAAATT+AGG | - | chr5_4:23455930-23455949 | Msa0844830:intron | 20.0% |
| !! | TGGATGAAATTCAATAAATA+AGG | - | chr5_4:23456612-23456631 | Msa0844830:intron | 20.0% |
| !! | GGATGAAATTCAATAAATAA+GGG | - | chr5_4:23456613-23456632 | Msa0844830:intron | 20.0% |
| !!! | AATAAATAAGGGTATAATAG+TGG | - | chr5_4:23456624-23456643 | Msa0844830:intron | 20.0% |
| !!! | TATTTTGTACTTTGAATCTA+CGG | - | chr5_4:23457033-23457052 | Msa0844830:CDS | 20.0% |
| !!! | TTTTGTTAACATATGTGAAT+CGG | - | chr5_4:23457133-23457152 | Msa0844830:intron | 20.0% |
| !!! | CAATTTTTTGTCATGATATT+TGG | + | chr5_4:23457243-23457262 | None:intergenic | 20.0% |
| !! | AAGTTTGTGCATAATTATTA+AGG | - | chr5_4:23457428-23457447 | Msa0844830:intron | 20.0% |
| !! | AGTATAGGGAAAAAAAAAAA+AGG | - | chr5_4:23457699-23457718 | Msa0844830:intron | 20.0% |
| !! | GTATAGGGAAAAAAAAAAAA+GGG | - | chr5_4:23457700-23457719 | Msa0844830:intron | 20.0% |
| !! | AAAATGGTAAAAATCTCTTT+CGG | - | chr5_4:23457784-23457803 | Msa0844830:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr5_4:23457933-23457952 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr5_4:23457934-23457953 | None:intergenic | 20.0% |
| !! | GAAATTCCTAAAATTATTCA+TGG | - | chr5_4:23459062-23459081 | Msa0844830:intron | 20.0% |
| !!! | ATACATGCAAACAATTTTAT+GGG | + | chr5_4:23459830-23459849 | None:intergenic | 20.0% |
| !!! | TATGGTTTTGAAAAAGAATT+AGG | - | chr5_4:23459847-23459866 | Msa0844830:intron | 20.0% |
| !!! | TTCTGGATTCTTTTTTTTAA+GGG | - | chr5_4:23460472-23460491 | Msa0844830:intron | 20.0% |
| !!! | AATTTTTATATCAGAGCTAT+TGG | - | chr5_4:23460963-23460982 | Msa0844830:intron | 20.0% |
| !! | ATAACAATCATTGTAATTCT+TGG | + | chr5_4:23461064-23461083 | None:intergenic | 20.0% |
| !! | AAGAATTACAATGATTGTTA+TGG | - | chr5_4:23461063-23461082 | Msa0844830:intron | 20.0% |
| !!! | GCTTATTTTTATGTTGAAAT+TGG | - | chr5_4:23461162-23461181 | Msa0844830:intron | 20.0% |
| !!! | TTTTTATGTTGAAATTGGAA+TGG | - | chr5_4:23461167-23461186 | Msa0844830:intron | 20.0% |
| !!! | AAACACCAATTTTCAAATTT+TGG | - | chr5_4:23461434-23461453 | Msa0844830:intron | 20.0% |
| !!! | TTTTCATACAGGAAATAATT+AGG | - | chr5_4:23461812-23461831 | Msa0844830:intron | 20.0% |
| !!! | TTTCTTCAAATAGCATTTTT+AGG | + | chr5_4:23461965-23461984 | None:intergenic | 20.0% |
| !!! | ATTGACTTAAATTTACACAT+TGG | + | chr5_4:23462266-23462285 | None:intergenic | 20.0% |
| !!! | GTATTTTGAATAGTTAAAAC+TGG | - | chr5_4:23462343-23462362 | Msa0844830:intron | 20.0% |
| !!! | TAGCATTTAGAATTAAGAAA+AGG | - | chr5_4:23462409-23462428 | Msa0844830:intron | 20.0% |
| !!! | AATTAAGAAAAGGATTTTGT+CGG | - | chr5_4:23462419-23462438 | Msa0844830:intron | 20.0% |
| ! | TCTAACTTGAACTTAGAATT+TGG | + | chr5_4:23456184-23456203 | None:intergenic | 25.0% |
| !! | TCAAGTTAGAATCAATTTTC+AGG | - | chr5_4:23456194-23456213 | Msa0844830:intron | 25.0% |
| !! | CAAGTTAGAATCAATTTTCA+GGG | - | chr5_4:23456195-23456214 | Msa0844830:intron | 25.0% |
| ! | AAACGACTAATATTATGAGA+CGG | + | chr5_4:23456480-23456499 | None:intergenic | 25.0% |
| ! | CTCATAATATTAGTCGTTTA+AGG | - | chr5_4:23456481-23456500 | Msa0844830:intron | 25.0% |
| ! | TCCTTATTAATTGTAGTTAG+TGG | - | chr5_4:23456578-23456597 | Msa0844830:intron | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr5_4:23456582-23456601 | None:intergenic | 25.0% |
| ! | TACAAATAAGTCATTCATTG+TGG | + | chr5_4:23456908-23456927 | None:intergenic | 25.0% |
| ! | GTGTGTGTAAATAAAAGAAA+GGG | + | chr5_4:23457113-23457132 | None:intergenic | 25.0% |
| ! | AGTGTGTGTAAATAAAAGAA+AGG | + | chr5_4:23457114-23457133 | None:intergenic | 25.0% |
| ! | TCCTACTTACTTAAATCAAA+CGG | - | chr5_4:23457293-23457312 | Msa0844830:intron | 25.0% |
| ! | AAACGACTATTATTTAGAGA+CGG | + | chr5_4:23457407-23457426 | None:intergenic | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr5_4:23456581-23456600 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr5_4:23456582-23456601 | None:intergenic | 25.0% |
| ! | ATCTCTTTCGGTTTAATTAT+AGG | - | chr5_4:23457796-23457815 | Msa0844830:intron | 25.0% |
| ! | TCTCTTTCGGTTTAATTATA+GGG | - | chr5_4:23457797-23457816 | Msa0844830:intron | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr5_4:23457900-23457919 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr5_4:23458222-23458241 | Msa0844830:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr5_4:23458223-23458242 | Msa0844830:intron | 25.0% |
| !!! | TGTATTTGTATTTTTAGGGT+TGG | + | chr5_4:23458387-23458406 | None:intergenic | 25.0% |
| !! | AATGTTGTTTGATGTTTGAA+GGG | + | chr5_4:23458688-23458707 | None:intergenic | 25.0% |
| !! | TAATGTTGTTTGATGTTTGA+AGG | + | chr5_4:23458689-23458708 | None:intergenic | 25.0% |
| !! | TGCAAAATGAAGAAATTTTG+CGG | + | chr5_4:23458813-23458832 | None:intergenic | 25.0% |
| ! | TAAAGACAAATTATGTTTGG+TGG | + | chr5_4:23458869-23458888 | None:intergenic | 25.0% |
| !! | ACCAAACATAATTTGTCTTT+AGG | - | chr5_4:23458868-23458887 | Msa0844830:intron | 25.0% |
| ! | ACCTAAAGACAAATTATGTT+TGG | + | chr5_4:23458872-23458891 | None:intergenic | 25.0% |
| ! | TTCCTAAAATTATTCATGGT+TGG | - | chr5_4:23459066-23459085 | Msa0844830:intron | 25.0% |
| ! | TTGGTTGTGTTATCAATTAA+TGG | - | chr5_4:23459197-23459216 | Msa0844830:intron | 25.0% |
| ! | TTTGTGAATGTTTGAATTCA+CGG | - | chr5_4:23459249-23459268 | Msa0844830:intron | 25.0% |
| !!! | TTTCAAATTATTTGCTGTGT+CGG | - | chr5_4:23459565-23459584 | Msa0844830:intron | 25.0% |
| !! | TACATGCAAACAATTTTATG+GGG | + | chr5_4:23459829-23459848 | None:intergenic | 25.0% |
| !! | CATACATGCAAACAATTTTA+TGG | + | chr5_4:23459831-23459850 | None:intergenic | 25.0% |
| ! | CATAAAATTGTTTGCATGTA+TGG | - | chr5_4:23459829-23459848 | Msa0844830:intron | 25.0% |
| !! | TTTATTGTGTTACCGATTAA+TGG | - | chr5_4:23459879-23459898 | Msa0844830:intron | 25.0% |
| ! | TATCATGGATAACCATTAAT+CGG | + | chr5_4:23459894-23459913 | None:intergenic | 25.0% |
| ! | GAAATCAAATTGAATGTTTG+TGG | + | chr5_4:23460019-23460038 | None:intergenic | 25.0% |
| !!! | TTTAACTTGAAGCTAGATTT+TGG | + | chr5_4:23460161-23460180 | None:intergenic | 25.0% |
| ! | ATAATGAATCTGAGAATTTG+TGG | - | chr5_4:23460444-23460463 | Msa0844830:intron | 25.0% |
| ! | TAAAAAAAAGAATCCAGAAC+AGG | + | chr5_4:23460471-23460490 | None:intergenic | 25.0% |
| !!! | GTTCTGGATTCTTTTTTTTA+AGG | - | chr5_4:23460471-23460490 | Msa0844830:intron | 25.0% |
| !!! | TCTGGATTCTTTTTTTTAAG+GGG | - | chr5_4:23460473-23460492 | Msa0844830:intron | 25.0% |
| !!! | ATTCTTTTTTTTAAGGGGTT+TGG | - | chr5_4:23460478-23460497 | Msa0844830:intron | 25.0% |
| ! | AATGTGATTTCTATGTATGT+AGG | - | chr5_4:23460522-23460541 | Msa0844830:intron | 25.0% |
| ! | ATGTGATTTCTATGTATGTA+GGG | - | chr5_4:23460523-23460542 | Msa0844830:intron | 25.0% |
| ! | GATATAAAAATTCTTGGCAA+GGG | + | chr5_4:23460955-23460974 | None:intergenic | 25.0% |
| ! | TGATATAAAAATTCTTGGCA+AGG | + | chr5_4:23460956-23460975 | None:intergenic | 25.0% |
| !! | AGCTCTGATATAAAAATTCT+TGG | + | chr5_4:23460961-23460980 | None:intergenic | 25.0% |
| ! | AATTACAATGATTGTTATGG+AGG | - | chr5_4:23461066-23461085 | Msa0844830:intron | 25.0% |
| ! | CAAAACATTATATTGACGAT+TGG | + | chr5_4:23461356-23461375 | None:intergenic | 25.0% |
| !! | TAGTATGTCTACAATTTTCT+TGG | - | chr5_4:23461476-23461495 | Msa0844830:intron | 25.0% |
| ! | ATTTGAGAAACAAAGAGATA+TGG | - | chr5_4:23461594-23461613 | Msa0844830:intron | 25.0% |
| ! | TTTGAGAAACAAAGAGATAT+GGG | - | chr5_4:23461595-23461614 | Msa0844830:intron | 25.0% |
| ! | ATATTCAGAGTTTCAACAAT+TGG | - | chr5_4:23461918-23461937 | Msa0844830:intron | 25.0% |
| ! | TCTGCAAGTATAAAATATTC+TGG | - | chr5_4:23462214-23462233 | Msa0844830:intron | 25.0% |
| ! | AAAGCTAAAATATGTTACTC+TGG | + | chr5_4:23462733-23462752 | None:intergenic | 25.0% |
| ! | TATCCATAAAAATCAGAGAT+GGG | + | chr5_4:23462781-23462800 | None:intergenic | 25.0% |
| ! | TTATCCATAAAAATCAGAGA+TGG | + | chr5_4:23462782-23462801 | None:intergenic | 25.0% |
| ! | ATCAATCCAAACATTATAAG+CGG | + | chr5_4:23462879-23462898 | None:intergenic | 25.0% |
| ! | AAAATCAAATACACACACAT+CGG | - | chr5_4:23463367-23463386 | Msa0844830:CDS | 25.0% |
| ATCTTACAAAGAGAGATGAA+AGG | + | chr5_4:23455601-23455620 | None:intergenic | 30.0% | |
| AATATTACACAATCTGGGTT+TGG | + | chr5_4:23455635-23455654 | None:intergenic | 30.0% | |
| GGTACAATATTACACAATCT+GGG | + | chr5_4:23455640-23455659 | None:intergenic | 30.0% | |
| TGGTACAATATTACACAATC+TGG | + | chr5_4:23455641-23455660 | None:intergenic | 30.0% | |
| TAAGCCTAAACACAAATGTT+TGG | + | chr5_4:23455674-23455693 | None:intergenic | 30.0% | |
| TGTAACTACTCATCAGAAAA+TGG | - | chr5_4:23455724-23455743 | Msa0844830:three_prime_UTR | 30.0% | |
| !!! | AAACAATTTTTTGGGTCGTT+AGG | + | chr5_4:23455906-23455925 | None:intergenic | 30.0% |
| TTGGTTGTGTTACCAATTAA+TGG | - | chr5_4:23455963-23455982 | Msa0844830:intron | 30.0% | |
| CATCAAGGATATCCATTAAT+TGG | + | chr5_4:23455978-23455997 | None:intergenic | 30.0% | |
| !! | CTGATAGTGATCAAGATTTT+AGG | - | chr5_4:23455998-23456017 | Msa0844830:intron | 30.0% |
| !! | AGTGATCAAGATTTTAGGTA+AGG | - | chr5_4:23456003-23456022 | Msa0844830:intron | 30.0% |
| !! | GTGATCAAGATTTTAGGTAA+GGG | - | chr5_4:23456004-23456023 | Msa0844830:intron | 30.0% |
| CAATTCTAGTGCAAAATATC+TGG | - | chr5_4:23456224-23456243 | Msa0844830:intron | 30.0% | |
| TTTGATTCTTTGATTCTCCT+CGG | + | chr5_4:23456383-23456402 | None:intergenic | 30.0% | |
| AAGTGACAATTATTGTGAGA+CGG | - | chr5_4:23456715-23456734 | Msa0844830:intron | 30.0% | |
| AATGAGATAAAGATGTGAGA+GGG | + | chr5_4:23456874-23456893 | None:intergenic | 30.0% | |
| TTTAGTCCATCATTTCAAGA+TGG | - | chr5_4:23457160-23457179 | Msa0844830:intron | 30.0% | |
| TTGTCATGATATTTGGTAGA+CGG | + | chr5_4:23457236-23457255 | None:intergenic | 30.0% | |
| ! | TCCGTTTGATTTAAGTAAGT+AGG | + | chr5_4:23457297-23457316 | None:intergenic | 30.0% |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr5_4:23457505-23457524 | Msa0844830:intron | 30.0% | |
| CTCTTTCGGTTTAATTATAG+GGG | - | chr5_4:23457798-23457817 | Msa0844830:intron | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr5_4:23458316-23458335 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr5_4:23458315-23458334 | None:intergenic | 30.0% |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr5_4:23457901-23457920 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr5_4:23458160-23458179 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr5_4:23458315-23458334 | Msa0844830:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr5_4:23458316-23458335 | Msa0844830:CDS | 30.0% |
| !! | CCGCTGTATTTGTATTTTTA+GGG | + | chr5_4:23458391-23458410 | None:intergenic | 30.0% |
| CCCTAAAAATACAAATACAG+CGG | - | chr5_4:23458388-23458407 | Msa0844830:CDS | 30.0% | |
| ! | ACCGCTGTATTTGTATTTTT+AGG | + | chr5_4:23458392-23458411 | None:intergenic | 30.0% |
| !! | AGCGGTGTTAAATTTTAAAC+AGG | - | chr5_4:23458406-23458425 | Msa0844830:intron | 30.0% |
| AATGGATGACAACATTCAAT+GGG | + | chr5_4:23458549-23458568 | None:intergenic | 30.0% | |
| AAATGGATGACAACATTCAA+TGG | + | chr5_4:23458550-23458569 | None:intergenic | 30.0% | |
| ! | TGAATGTTGTCATCCATTTT+TGG | - | chr5_4:23458551-23458570 | Msa0844830:intron | 30.0% |
| CAAAGAAAGATAGATTGTGA+AGG | + | chr5_4:23458638-23458657 | None:intergenic | 30.0% | |
| CTGTAGAAAACATGTTTAAG+TGG | + | chr5_4:23458753-23458772 | None:intergenic | 30.0% | |
| GGTACAATATTCCACAATTT+GGG | + | chr5_4:23458838-23458857 | None:intergenic | 30.0% | |
| TGGTACAATATTCCACAATT+TGG | + | chr5_4:23458839-23458858 | None:intergenic | 30.0% | |
| ! | CTCCAACCATGAATAATTTT+AGG | + | chr5_4:23459071-23459090 | None:intergenic | 30.0% |
| AAAATTATTCATGGTTGGAG+TGG | - | chr5_4:23459071-23459090 | Msa0844830:intron | 30.0% | |
| GCAAATCATACTAAGCTAAT+AGG | + | chr5_4:23459349-23459368 | None:intergenic | 30.0% | |
| TTGTAGCTTCAACAAAATCA+TGG | - | chr5_4:23459375-23459394 | Msa0844830:intron | 30.0% | |
| TTAGTGTATCATTGGCATAA+TGG | + | chr5_4:23459426-23459445 | None:intergenic | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr5_4:23459534-23459553 | None:intergenic | 30.0% | |
| CACAAACATGAAAGATGTTA+GGG | + | chr5_4:23459767-23459786 | None:intergenic | 30.0% | |
| ! | ACATGCAAACAATTTTATGG+GGG | + | chr5_4:23459828-23459847 | None:intergenic | 30.0% |
| !! | ATGGATATCCATTTTGAAGA+AGG | + | chr5_4:23459917-23459936 | None:intergenic | 30.0% |
| !!! | CTTAATCACTTTTTGCATCA+TGG | + | chr5_4:23459936-23459955 | None:intergenic | 30.0% |
| ! | TAAGATTGTGTTTTCACGTT+TGG | - | chr5_4:23459952-23459971 | Msa0844830:intron | 30.0% |
| AAATTGAATGTTTGTGGTCA+TGG | + | chr5_4:23460013-23460032 | None:intergenic | 30.0% | |
| TTCCACTTGAGAAAATTCAA+AGG | - | chr5_4:23460203-23460222 | Msa0844830:intron | 30.0% | |
| GGAGGAATAATTGATTATAG+AGG | + | chr5_4:23460248-23460267 | None:intergenic | 30.0% | |
| TGTGATTTCTATGTATGTAG+GGG | - | chr5_4:23460524-23460543 | Msa0844830:intron | 30.0% | |
| TGTCTTATGCACTTGATTAT+AGG | - | chr5_4:23460774-23460793 | Msa0844830:intron | 30.0% | |
| TGATTATAGGTGAATGGTTA+TGG | - | chr5_4:23460787-23460806 | Msa0844830:intron | 30.0% | |
| ATTTCCAGGGAAAAAATTGA+GGG | - | chr5_4:23460870-23460889 | Msa0844830:intron | 30.0% | |
| GAAACTAACTGCAAATAAGA+GGG | + | chr5_4:23461104-23461123 | None:intergenic | 30.0% | |
| TGAAACTAACTGCAAATAAG+AGG | + | chr5_4:23461105-23461124 | None:intergenic | 30.0% | |
| AAGTGAATCTACGATTCAAA+TGG | + | chr5_4:23461325-23461344 | None:intergenic | 30.0% | |
| ! | TGTCTACAATTTTCTTGGTA+CGG | - | chr5_4:23461481-23461500 | Msa0844830:intron | 30.0% |
| ATACAACAAATCATGCGATA+CGG | + | chr5_4:23461544-23461563 | None:intergenic | 30.0% | |
| TTGAGAAACAAAGAGATATG+GGG | - | chr5_4:23461596-23461615 | Msa0844830:intron | 30.0% | |
| GACTTAGATATGACAAGTAA+CGG | - | chr5_4:23461638-23461657 | Msa0844830:intron | 30.0% | |
| GTAACGGCATATTAAGATTT+AGG | - | chr5_4:23461654-23461673 | Msa0844830:intron | 30.0% | |
| GCATATTAAGATTTAGGTGT+TGG | - | chr5_4:23461660-23461679 | Msa0844830:intron | 30.0% | |
| TGTTTGTACTAAAAGAAGCT+GGG | - | chr5_4:23461787-23461806 | Msa0844830:intron | 30.0% | |
| TTCATTGGGACATTTAACAT+GGG | - | chr5_4:23461885-23461904 | Msa0844830:intron | 30.0% | |
| TGTTGAAACTCTGAATATGA+TGG | + | chr5_4:23461916-23461935 | None:intergenic | 30.0% | |
| !! | CTTCAAATAGCATTTTTAGG+TGG | + | chr5_4:23461962-23461981 | None:intergenic | 30.0% |
| !! | TTTAAGCACTGTTTAACTTG+TGG | - | chr5_4:23461996-23462015 | Msa0844830:intron | 30.0% |
| AAACTTGAACAAGTTTCTTG+AGG | - | chr5_4:23462132-23462151 | Msa0844830:intron | 30.0% | |
| ! | TAGATTTTCTCATCATTGAC+AGG | - | chr5_4:23462383-23462402 | Msa0844830:intron | 30.0% |
| ! | TGTTTTTCACATTACTGCTA+AGG | - | chr5_4:23462497-23462516 | Msa0844830:intron | 30.0% |
| ! | GTTTCTTTCCAATTTTCTGA+TGG | - | chr5_4:23462604-23462623 | Msa0844830:intron | 30.0% |
| CAGTTATACCATCAGAAAAT+TGG | + | chr5_4:23462615-23462634 | None:intergenic | 30.0% | |
| ! | TGAGGTAAATTTTCATACTG+CGG | + | chr5_4:23462685-23462704 | None:intergenic | 30.0% |
| ! | ATTCCCATCTCTGATTTTTA+TGG | - | chr5_4:23462775-23462794 | Msa0844830:intron | 30.0% |
| TTCTTATAGTAGTCTACACT+TGG | + | chr5_4:23462846-23462865 | None:intergenic | 30.0% | |
| AATGATCCGCTTATAATGTT+TGG | - | chr5_4:23462870-23462889 | Msa0844830:intron | 30.0% | |
| TAGTGAGATTGTCTAAATCA+CGG | - | chr5_4:23462898-23462917 | Msa0844830:intron | 30.0% | |
| ! | TGTAGCTTTTGTCAAAATCA+CGG | + | chr5_4:23462933-23462952 | None:intergenic | 30.0% |
| AACAGATTAAAGAGTTCCAT+AGG | - | chr5_4:23463080-23463099 | Msa0844830:intron | 30.0% | |
| GTAGTATATGTACATGATCA+CGG | + | chr5_4:23463208-23463227 | None:intergenic | 30.0% | |
| !! | ATATACTACTTTTCCCTTTG+AGG | - | chr5_4:23463219-23463238 | Msa0844830:CDS | 30.0% |
| CAAGCTTCAAGAATACAATT+GGG | + | chr5_4:23463263-23463282 | None:intergenic | 30.0% | |
| TCATGCAGTATACACATTAT+TGG | + | chr5_4:23463300-23463319 | None:intergenic | 30.0% | |
| TGTATACTGCATGATTCAAT+TGG | - | chr5_4:23463306-23463325 | Msa0844830:CDS | 30.0% | |
| GTATACTGCATGATTCAATT+GGG | - | chr5_4:23463307-23463326 | Msa0844830:CDS | 30.0% | |
| !! | TGTGTGTGTATTTGATTTTG+AGG | + | chr5_4:23463366-23463385 | None:intergenic | 30.0% |
| AAATCAAATACACACACATC+GGG | - | chr5_4:23463368-23463387 | Msa0844830:CDS | 30.0% | |
| ! | AAATGTTTGGTGGAAGAAGA+TGG | + | chr5_4:23455661-23455680 | None:intergenic | 35.0% |
| TCCACCAAACATTTGTGTTT+AGG | - | chr5_4:23455667-23455686 | Msa0844830:three_prime_UTR | 35.0% | |
| AGACATGTTTCTTGATGAAG+TGG | + | chr5_4:23455698-23455717 | None:intergenic | 35.0% | |
| ATTCTGAACCCTTTCATGTT+TGG | - | chr5_4:23455849-23455868 | Msa0844830:CDS | 35.0% | |
| AGAGTTCTGCTATCATGATT+TGG | - | chr5_4:23456307-23456326 | Msa0844830:CDS | 35.0% | |
| GAGTTCTGCTATCATGATTT+GGG | - | chr5_4:23456308-23456327 | Msa0844830:CDS | 35.0% | |
| AGTTCTGCTATCATGATTTG+GGG | - | chr5_4:23456309-23456328 | Msa0844830:CDS | 35.0% | |
| GACTAATATTATGAGACGGA+GGG | + | chr5_4:23456476-23456495 | None:intergenic | 35.0% | |
| AGTTAGTGGAGTAGTTAAGT+TGG | - | chr5_4:23456592-23456611 | Msa0844830:intron | 35.0% | |
| GACAGAGAGAGAAAATATGA+GGG | + | chr5_4:23456813-23456832 | None:intergenic | 35.0% | |
| AGACAGAGAGAGAAAATATG+AGG | + | chr5_4:23456814-23456833 | None:intergenic | 35.0% | |
| GAATGAGATAAAGATGTGAG+AGG | + | chr5_4:23456875-23456894 | None:intergenic | 35.0% | |
| CTTCTTCCATCTTGAAATGA+TGG | + | chr5_4:23457169-23457188 | None:intergenic | 35.0% | |
| TTGTAGTTAGTGGAGTAGTT+AGG | - | chr5_4:23456588-23456607 | Msa0844830:intron | 35.0% | |
| ATGGTGAAGAGACAATAAGA+CGG | - | chr5_4:23457672-23457691 | Msa0844830:intron | 35.0% | |
| CTATTAGTGCCAAGGAAAAT+TGG | + | chr5_4:23457738-23457757 | None:intergenic | 35.0% | |
| TCATTCAACTATTAGTGCCA+AGG | + | chr5_4:23457746-23457765 | None:intergenic | 35.0% | |
| TTGGCACTAATAGTTGAATG+AGG | - | chr5_4:23457745-23457764 | Msa0844830:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr5_4:23458300-23458319 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr5_4:23458300-23458319 | Msa0844830:CDS | 35.0% | |
| ATGACAACATTCAATGGGAA+GGG | + | chr5_4:23458544-23458563 | None:intergenic | 35.0% | |
| GCAATAGATAAGCATTCAGA+AGG | - | chr5_4:23458610-23458629 | Msa0844830:intron | 35.0% | |
| ! | ATGAAGAAATTTTGCGGAGA+GGG | + | chr5_4:23458807-23458826 | None:intergenic | 35.0% |
| ! | AATGAAGAAATTTTGCGGAG+AGG | + | chr5_4:23458808-23458827 | None:intergenic | 35.0% |
| ! | CATTTTGCAAACCCAAATTG+TGG | - | chr5_4:23458824-23458843 | Msa0844830:intron | 35.0% |
| ! | TTATGTTTGGTGGAAGATGA+TGG | + | chr5_4:23458859-23458878 | None:intergenic | 35.0% |
| ATGCAAACAATTTCTGCTGT+GGG | + | chr5_4:23459134-23459153 | None:intergenic | 35.0% | |
| GCAGAAATTGTTTGCATGTA+CGG | - | chr5_4:23459137-23459156 | Msa0844830:intron | 35.0% | |
| TTCCAAGTGCATATTTGGTA+CGG | - | chr5_4:23459297-23459316 | Msa0844830:intron | 35.0% | |
| TGTATCATTGGCATAATGGT+GGG | + | chr5_4:23459422-23459441 | None:intergenic | 35.0% | |
| TCACACACTTAGTGTATCAT+TGG | + | chr5_4:23459434-23459453 | None:intergenic | 35.0% | |
| TGATACACTAAGTGTGTGAT+TGG | - | chr5_4:23459435-23459454 | Msa0844830:intron | 35.0% | |
| AAACCTATGAAGCACGTATA+CGG | + | chr5_4:23459613-23459632 | None:intergenic | 35.0% | |
| !! | ATTTTGAGTGAGCCAATGTT+TGG | - | chr5_4:23459650-23459669 | Msa0844830:intron | 35.0% |
| TTATCATTTGAATGTGCAGC+AGG | + | chr5_4:23459707-23459726 | None:intergenic | 35.0% | |
| CCACAAACATGAAAGATGTT+AGG | + | chr5_4:23459768-23459787 | None:intergenic | 35.0% | |
| CCTAACATCTTTCATGTTTG+TGG | - | chr5_4:23459765-23459784 | Msa0844830:intron | 35.0% | |
| AACATCTTTCATGTTTGTGG+CGG | - | chr5_4:23459768-23459787 | Msa0844830:intron | 35.0% | |
| ! | CATGCAAACAATTTTATGGG+GGG | + | chr5_4:23459827-23459846 | None:intergenic | 35.0% |
| !!! | CCATTTTGAAGAAGGTATCA+TGG | + | chr5_4:23459909-23459928 | None:intergenic | 35.0% |
| CCATGATACCTTCTTCAAAA+TGG | - | chr5_4:23459906-23459925 | Msa0844830:intron | 35.0% | |
| !!! | CATGGTGGGTTTTTCAAATT+CGG | + | chr5_4:23459995-23460014 | None:intergenic | 35.0% |
| ! | TTCAAGTTAAAACAGTTCCG+AGG | - | chr5_4:23460170-23460189 | Msa0844830:CDS | 35.0% |
| !! | AGTGGAATTGATTTTGTCCT+CGG | + | chr5_4:23460190-23460209 | None:intergenic | 35.0% |
| ! | AGCCTTTGAATTTTCTCAAG+TGG | + | chr5_4:23460208-23460227 | None:intergenic | 35.0% |
| !!! | GAAATTTTTGGGTCCACTTT+CGG | + | chr5_4:23460278-23460297 | None:intergenic | 35.0% |
| !! | ATAGCGTGGTGGAAATTTTT+GGG | + | chr5_4:23460289-23460308 | None:intergenic | 35.0% |
| !! | AATAGCGTGGTGGAAATTTT+TGG | + | chr5_4:23460290-23460309 | None:intergenic | 35.0% |
| AAAATTTCCACCACGCTATT+TGG | - | chr5_4:23460290-23460309 | Msa0844830:intron | 35.0% | |
| AAATTTCCACCACGCTATTT+GGG | - | chr5_4:23460291-23460310 | Msa0844830:intron | 35.0% | |
| !!! | GGTGACGTCGAAATTTTTTA+TGG | - | chr5_4:23460315-23460334 | Msa0844830:intron | 35.0% |
| CAGATTCATTATCACTGTCA+AGG | + | chr5_4:23460436-23460455 | None:intergenic | 35.0% | |
| GTGATTTCTATGTATGTAGG+GGG | - | chr5_4:23460525-23460544 | Msa0844830:intron | 35.0% | |
| TGATTTCTATGTATGTAGGG+GGG | - | chr5_4:23460526-23460545 | Msa0844830:intron | 35.0% | |
| TGCAAGATGATCATAGCATA+AGG | + | chr5_4:23460659-23460678 | None:intergenic | 35.0% | |
| ATCTTGCATTCAGGACATTT+GGG | - | chr5_4:23460671-23460690 | Msa0844830:intron | 35.0% | |
| TGCACTTGATTATAGGTGAA+TGG | - | chr5_4:23460781-23460800 | Msa0844830:intron | 35.0% | |
| GATTTCCAGGGAAAAAATTG+AGG | - | chr5_4:23460869-23460888 | Msa0844830:intron | 35.0% | |
| TACAATGATTGTTATGGAGG+AGG | - | chr5_4:23461069-23461088 | Msa0844830:intron | 35.0% | |
| GAGATTCACTTTAGTGTTTG+AGG | - | chr5_4:23461257-23461276 | Msa0844830:intron | 35.0% | |
| ACTGGAAATTGTTACTCTCT+TGG | + | chr5_4:23461407-23461426 | None:intergenic | 35.0% | |
| ! | CTTGCCAAACCATGATTTTA+AGG | - | chr5_4:23461506-23461525 | Msa0844830:intron | 35.0% |
| ACTGCCTTAAAATCATGGTT+TGG | + | chr5_4:23461513-23461532 | None:intergenic | 35.0% | |
| !!! | AAACCATGATTTTAAGGCAG+TGG | - | chr5_4:23461512-23461531 | Msa0844830:intron | 35.0% |
| AAACCACTGCCTTAAAATCA+TGG | + | chr5_4:23461518-23461537 | None:intergenic | 35.0% | |
| GAGATTAAAGGATGAACCAT+TGG | + | chr5_4:23461742-23461761 | None:intergenic | 35.0% | |
| TACAATGCAAGGGAGATTAA+AGG | + | chr5_4:23461754-23461773 | None:intergenic | 35.0% | |
| TTCTGAATGCTACAATGCAA+GGG | + | chr5_4:23461764-23461783 | None:intergenic | 35.0% | |
| TTTCTGAATGCTACAATGCA+AGG | + | chr5_4:23461765-23461784 | None:intergenic | 35.0% | |
| ! | CAGCTTCTTTTAGTACAAAC+AGG | + | chr5_4:23461788-23461807 | None:intergenic | 35.0% |
| CTGTTTGTACTAAAAGAAGC+TGG | - | chr5_4:23461786-23461805 | Msa0844830:intron | 35.0% | |
| AGGAAATACACAGAATCATC+TGG | - | chr5_4:23461832-23461851 | Msa0844830:intron | 35.0% | |
| TACACAGAATCATCTGGTAA+TGG | - | chr5_4:23461838-23461857 | Msa0844830:intron | 35.0% | |
| GTTCATTGGGACATTTAACA+TGG | - | chr5_4:23461884-23461903 | Msa0844830:intron | 35.0% | |
| ATGTCACTATTTCCACTCAT+CGG | - | chr5_4:23462083-23462102 | Msa0844830:intron | 35.0% | |
| AACAAGTTTCTTGAGGAGAA+TGG | - | chr5_4:23462139-23462158 | Msa0844830:intron | 35.0% | |
| GGATTCAGATTGAATTCTGA+AGG | - | chr5_4:23462160-23462179 | Msa0844830:intron | 35.0% | |
| ! | TTCAGATTGAATTCTGAAGG+AGG | - | chr5_4:23462163-23462182 | Msa0844830:intron | 35.0% |
| AATCAGAAAGAGACTAGTGA+TGG | + | chr5_4:23462289-23462308 | None:intergenic | 35.0% | |
| ! | CACTAGTCTCTTTCTGATTT+AGG | - | chr5_4:23462290-23462309 | Msa0844830:intron | 35.0% |
| ATGTTTGGACTTTGGATTGA+TGG | + | chr5_4:23463005-23463024 | None:intergenic | 35.0% | |
| GAAATCCTGCAGAAAATGAA+TGG | + | chr5_4:23463035-23463054 | None:intergenic | 35.0% | |
| AGATTAAAGAGTTCCATAGG+AGG | - | chr5_4:23463083-23463102 | Msa0844830:intron | 35.0% | |
| GATTAAAGAGTTCCATAGGA+GGG | - | chr5_4:23463084-23463103 | Msa0844830:intron | 35.0% | |
| AATGTTCTCTCTTCCTCAAA+GGG | + | chr5_4:23463235-23463254 | None:intergenic | 35.0% | |
| AAATGTTCTCTCTTCCTCAA+AGG | + | chr5_4:23463236-23463255 | None:intergenic | 35.0% | |
| CCAAGCTTCAAGAATACAAT+TGG | + | chr5_4:23463264-23463283 | None:intergenic | 35.0% | |
| CCAATTGTATTCTTGAAGCT+TGG | - | chr5_4:23463261-23463280 | Msa0844830:CDS | 35.0% | |
| GCCTAAACACAAATGTTTGG+TGG | + | chr5_4:23455671-23455690 | None:intergenic | 40.0% | |
| AGAAAATGGATCTCACTCTC+AGG | - | chr5_4:23455738-23455757 | Msa0844830:three_prime_UTR | 40.0% | |
| GAAAATGGATCTCACTCTCA+GGG | - | chr5_4:23455739-23455758 | Msa0844830:three_prime_UTR | 40.0% | |
| TAACCGCTCCAAACATGAAA+GGG | + | chr5_4:23455860-23455879 | None:intergenic | 40.0% | |
| TTAACCGCTCCAAACATGAA+AGG | + | chr5_4:23455861-23455880 | None:intergenic | 40.0% | |
| !!! | TTTTTTGGGTCGTTAGGATG+AGG | + | chr5_4:23455900-23455919 | None:intergenic | 40.0% |
| CTTGATCACTATCAGCATCA+AGG | + | chr5_4:23455993-23456012 | None:intergenic | 40.0% | |
| !! | AACTCTAGTTCCACTTTTGG+AGG | + | chr5_4:23456293-23456312 | None:intergenic | 40.0% |
| !! | CAGAACTCTAGTTCCACTTT+TGG | + | chr5_4:23456296-23456315 | None:intergenic | 40.0% |
| ! | GTTCTGCTATCATGATTTGG+GGG | - | chr5_4:23456310-23456329 | Msa0844830:CDS | 40.0% |
| ! | TTCTGCTATCATGATTTGGG+GGG | - | chr5_4:23456311-23456330 | Msa0844830:CDS | 40.0% |
| ATCAAATGCGAGACTTTGAG+AGG | - | chr5_4:23456397-23456416 | Msa0844830:intron | 40.0% | |
| CGACTAATATTATGAGACGG+AGG | + | chr5_4:23456477-23456496 | None:intergenic | 40.0% | |
| TGACAATTATTGTGAGACGG+AGG | - | chr5_4:23456718-23456737 | Msa0844830:intron | 40.0% | |
| GACAATTATTGTGAGACGGA+GGG | - | chr5_4:23456719-23456738 | Msa0844830:intron | 40.0% | |
| ATCTTTATCTCATTCGCTCC+TGG | - | chr5_4:23456880-23456899 | Msa0844830:CDS | 40.0% | |
| AAGTCATTCATTGTGGAACC+AGG | + | chr5_4:23456901-23456920 | None:intergenic | 40.0% | |
| CGACTATTATTTAGAGACGG+AGG | + | chr5_4:23457404-23457423 | None:intergenic | 40.0% | |
| TGAAGAGACAATAAGACGGA+GGG | - | chr5_4:23457676-23457695 | Msa0844830:intron | 40.0% | |
| ! | AATAAGACGGAGGGAGTATA+GGG | - | chr5_4:23457685-23457704 | Msa0844830:intron | 40.0% |
| ! | TGCCTTATGCCAATTTTCCT+TGG | - | chr5_4:23457726-23457745 | Msa0844830:intron | 40.0% |
| TGCCAAGGAAAATTGGCATA+AGG | + | chr5_4:23457731-23457750 | None:intergenic | 40.0% | |
| CGAGTCGAGTAAGAAGATAA+TGG | + | chr5_4:23458443-23458462 | None:intergenic | 40.0% | |
| ! | CTCGACTCGAAGATTAATCT+TGG | - | chr5_4:23458454-23458473 | Msa0844830:intron | 40.0% |
| GATGACAACATTCAATGGGA+AGG | + | chr5_4:23458545-23458564 | None:intergenic | 40.0% | |
| ACGGTCAGCAAAACCAAAAA+TGG | + | chr5_4:23458567-23458586 | None:intergenic | 40.0% | |
| TCTATTGCAAGTTGCAAGCA+CGG | + | chr5_4:23458598-23458617 | None:intergenic | 40.0% | |
| ACAAGACACAGACATGTTTC+TGG | + | chr5_4:23455707-23455726 | None:intergenic | 40.0% | |
| TGTACGTACTCGTCAGAAAA+TGG | - | chr5_4:23458925-23458944 | Msa0844830:intron | 40.0% | |
| GAAAATGGATCACACTCTCA+TGG | - | chr5_4:23458940-23458959 | Msa0844830:intron | 40.0% | |
| CTCTCATGGATCAACAATTC+AGG | - | chr5_4:23458954-23458973 | Msa0844830:intron | 40.0% | |
| TGGGTGTGTGTTAAGATGAA+GGG | + | chr5_4:23459115-23459134 | None:intergenic | 40.0% | |
| CATGCAAACAATTTCTGCTG+TGG | + | chr5_4:23459135-23459154 | None:intergenic | 40.0% | |
| GTGAATGTTTGAATTCACGG+TGG | - | chr5_4:23459252-23459271 | Msa0844830:intron | 40.0% | |
| ! | TCACGGTGGATTTGATATAG+TGG | - | chr5_4:23459266-23459285 | Msa0844830:intron | 40.0% |
| CGTGATTCCAAGTGCATATT+TGG | - | chr5_4:23459292-23459311 | Msa0844830:intron | 40.0% | |
| TGCATATTTGGTACGGAGTT+TGG | - | chr5_4:23459304-23459323 | Msa0844830:intron | 40.0% | |
| GCATATTTGGTACGGAGTTT+GGG | - | chr5_4:23459305-23459324 | Msa0844830:intron | 40.0% | |
| CATATTTGGTACGGAGTTTG+GGG | - | chr5_4:23459306-23459325 | Msa0844830:intron | 40.0% | |
| ATATTTGGTACGGAGTTTGG+GGG | - | chr5_4:23459307-23459326 | Msa0844830:intron | 40.0% | |
| GTGTATCATTGGCATAATGG+TGG | + | chr5_4:23459423-23459442 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGAGCTATGAAGCA+CGG | - | chr5_4:23459455-23459474 | Msa0844830:intron | 40.0% |
| TACACCACAGATCCAAACAT+TGG | + | chr5_4:23459665-23459684 | None:intergenic | 40.0% | |
| TGAATGTTTGTGGTCATGGT+GGG | + | chr5_4:23460009-23460028 | None:intergenic | 40.0% | |
| TTGAATGTTTGTGGTCATGG+TGG | + | chr5_4:23460010-23460029 | None:intergenic | 40.0% | |
| GAACAATAGATTCCACGCAA+AGG | - | chr5_4:23460114-23460133 | Msa0844830:CDS | 40.0% | |
| !! | CTCTAGAATTAACCTTTGCG+TGG | + | chr5_4:23460129-23460148 | None:intergenic | 40.0% |
| GAACAGAAATCCTACAGCAA+AGG | - | chr5_4:23460597-23460616 | Msa0844830:intron | 40.0% | |
| TCCTACAGCAAAGGCAATAT+TGG | - | chr5_4:23460606-23460625 | Msa0844830:intron | 40.0% | |
| ! | TCCAATATTGCCTTTGCTGT+AGG | + | chr5_4:23460610-23460629 | None:intergenic | 40.0% |
| GCTATGATCATCTTGCATTC+AGG | - | chr5_4:23460662-23460681 | Msa0844830:intron | 40.0% | |
| CATCTTGCATTCAGGACATT+TGG | - | chr5_4:23460670-23460689 | Msa0844830:intron | 40.0% | |
| TCTTGCATTCAGGACATTTG+GGG | - | chr5_4:23460672-23460691 | Msa0844830:intron | 40.0% | |
| AAAACCATGTATGCGAAGGA+AGG | + | chr5_4:23460716-23460735 | None:intergenic | 40.0% | |
| ! | CTTCGCATACATGGTTTTCT+CGG | - | chr5_4:23460718-23460737 | Msa0844830:intron | 40.0% |
| ! | TGGTTATGGAATTGACTCCT+TGG | - | chr5_4:23460801-23460820 | Msa0844830:intron | 40.0% |
| !! | TAGTGTTTGAGGTTTTGACG+AGG | - | chr5_4:23461268-23461287 | Msa0844830:intron | 40.0% |
| !! | AATTGGTGTTTTCTGTGCAC+TGG | + | chr5_4:23461425-23461444 | None:intergenic | 40.0% |
| CTTCTATCGTATGACACCAA+TGG | - | chr5_4:23461723-23461742 | Msa0844830:intron | 40.0% | |
| ! | GAAGCTGGGAATTTTCATAC+AGG | - | chr5_4:23461801-23461820 | Msa0844830:intron | 40.0% |
| CAGAGTTTCAACAATTGGCA+AGG | - | chr5_4:23461923-23461942 | Msa0844830:intron | 40.0% | |
| GATGAGTGGAAATAGTGACA+TGG | + | chr5_4:23462084-23462103 | None:intergenic | 40.0% | |
| TCGGCTGAAAACTCATTTGA+AGG | - | chr5_4:23462102-23462121 | Msa0844830:intron | 40.0% | |
| !! | TCTGAAGGAGGAGTATTGAA+AGG | - | chr5_4:23462175-23462194 | Msa0844830:intron | 40.0% |
| GCAAATTCTATGTAGGAGCA+TGG | + | chr5_4:23462646-23462665 | None:intergenic | 40.0% | |
| ACGCTCTGCAAATTCTATGT+AGG | + | chr5_4:23462653-23462672 | None:intergenic | 40.0% | |
| GAGATCACTGATCAGTCTTT+AGG | - | chr5_4:23462813-23462832 | Msa0844830:intron | 40.0% | |
| !! | CTTTGGATTGATGGTGAGTT+GGG | + | chr5_4:23462996-23463015 | None:intergenic | 40.0% |
| !! | ACTTTGGATTGATGGTGAGT+TGG | + | chr5_4:23462997-23463016 | None:intergenic | 40.0% |
| ATGAATGGTCGGTGTATGTT+TGG | + | chr5_4:23463020-23463039 | None:intergenic | 40.0% | |
| TCCTGCAGAAAATGAATGGT+CGG | + | chr5_4:23463031-23463050 | None:intergenic | 40.0% | |
| !! | TACTCTGCTAACTTGTTCCT+TGG | + | chr5_4:23463155-23463174 | None:intergenic | 40.0% |
| AAGGAACAAGTTAGCAGAGT+AGG | - | chr5_4:23463154-23463173 | Msa0844830:intron | 40.0% | |
| CTCTCAGGGATCATCAATTC+AGG | - | chr5_4:23455753-23455772 | Msa0844830:three_prime_UTR | 45.0% | |
| GAACCCTTTCATGTTTGGAG+CGG | - | chr5_4:23455854-23455873 | Msa0844830:CDS | 45.0% | |
| AATTTGGCCTCCTCCAAAAG+TGG | - | chr5_4:23456280-23456299 | Msa0844830:CDS | 45.0% | |
| !! | TCTAGTTCCACTTTTGGAGG+AGG | + | chr5_4:23456290-23456309 | None:intergenic | 45.0% |
| CTATGTGACCATGAGTGAGA+TGG | - | chr5_4:23456355-23456374 | Msa0844830:CDS | 45.0% | |
| GAGGGAGTAATTACGTGGAT+TGG | + | chr5_4:23456458-23456477 | None:intergenic | 45.0% | |
| GTGAAGAGACAATAAGACGG+AGG | - | chr5_4:23457675-23457694 | Msa0844830:intron | 45.0% | |
| ! | CAATAAGACGGAGGGAGTAT+AGG | - | chr5_4:23457684-23457703 | Msa0844830:intron | 45.0% |
| ! | ATTTTGCGGAGAGGGATGAA+AGG | + | chr5_4:23458799-23458818 | None:intergenic | 45.0% |
| !! | AGACATGTTTCTGGCTGAAG+TGG | + | chr5_4:23458899-23458918 | None:intergenic | 45.0% |
| GTGGGTGTGTGTTAAGATGA+AGG | + | chr5_4:23459116-23459135 | None:intergenic | 45.0% | |
| CTCCGTACCAAATATGCACT+TGG | + | chr5_4:23459302-23459321 | None:intergenic | 45.0% | |
| !! | TCATTGGCATAATGGTGGGT+CGG | + | chr5_4:23459418-23459437 | None:intergenic | 45.0% |
| ATGAAGCACGTATACGGACA+CGG | + | chr5_4:23459607-23459626 | None:intergenic | 45.0% | |
| TGTCCGTATACGTGCTTCAT+AGG | - | chr5_4:23459607-23459626 | Msa0844830:intron | 45.0% | |
| TGAGCCAATGTTTGGATCTG+TGG | - | chr5_4:23459658-23459677 | Msa0844830:intron | 45.0% | |
| ! | TTTGGGTCCACTTTCGGTTT+TGG | + | chr5_4:23460272-23460291 | None:intergenic | 45.0% |
| ACAGCAATTCTCCGCACTAT+CGG | - | chr5_4:23460376-23460395 | Msa0844830:intron | 45.0% | |
| GAGAATTTGTGGTCCTGTTC+TGG | - | chr5_4:23460455-23460474 | Msa0844830:intron | 45.0% | |
| TGTTCTCGACAGAGTGAACA+AGG | + | chr5_4:23460633-23460652 | None:intergenic | 45.0% | |
| ACTTCCTTCCTTCGCATACA+TGG | - | chr5_4:23460709-23460728 | Msa0844830:intron | 45.0% | |
| CGAGAAAACCATGTATGCGA+AGG | + | chr5_4:23460720-23460739 | None:intergenic | 45.0% | |
| ! | ATGGAATTGACTCCTTGGCT+AGG | - | chr5_4:23460806-23460825 | Msa0844830:intron | 45.0% |
| ! | GCTAGGTTTTTCCTGGACTA+TGG | - | chr5_4:23460823-23460842 | Msa0844830:intron | 45.0% |
| !!! | AACGCCCTCAATTTTTTCCC+TGG | + | chr5_4:23460877-23460896 | None:intergenic | 45.0% |
| !! | GGAAAAAATTGAGGGCGTTG+TGG | - | chr5_4:23460878-23460897 | Msa0844830:intron | 45.0% |
| CACCAACATACCTGAGTTTG+CGG | + | chr5_4:23461003-23461022 | None:intergenic | 45.0% | |
| TACAGCTCTTGCGAGTTCAT+TGG | - | chr5_4:23461870-23461889 | Msa0844830:intron | 45.0% | |
| ACAGCTCTTGCGAGTTCATT+GGG | - | chr5_4:23461871-23461890 | Msa0844830:intron | 45.0% | |
| ! | ATGAGTTTTCAGCCGATGAG+TGG | + | chr5_4:23462098-23462117 | None:intergenic | 45.0% |
| CAGTTGAACTTTGCTGGAGA+AGG | + | chr5_4:23462573-23462592 | None:intergenic | 45.0% | |
| CTGCTACAGTTGAACTTTGC+TGG | + | chr5_4:23462579-23462598 | None:intergenic | 45.0% | |
| ! | ATGCTGCTTACTTCTGTGTG+AGG | + | chr5_4:23462703-23462722 | None:intergenic | 45.0% |
| ! | TGAGTTGGGAGAAATCAAGG+TGG | + | chr5_4:23462982-23463001 | None:intergenic | 45.0% |
| ! | TGGTGAGTTGGGAGAAATCA+AGG | + | chr5_4:23462985-23463004 | None:intergenic | 45.0% |
| GTCGGTGTATGTTTGGACTT+TGG | + | chr5_4:23463013-23463032 | None:intergenic | 45.0% | |
| ! | ACCGACCATTCATTTTCTGC+AGG | - | chr5_4:23463027-23463046 | Msa0844830:intron | 45.0% |
| AAAGAGTTCCATAGGAGGGA+TGG | - | chr5_4:23463088-23463107 | Msa0844830:intron | 45.0% | |
| AGTTAGCAGAGTAGGCTCTT+AGG | - | chr5_4:23463162-23463181 | Msa0844830:intron | 45.0% | |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr5_4:23458255-23458274 | Msa0844830:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr5_4:23458256-23458275 | Msa0844830:intron | 5.0% |
| !!! | AAAATTAAAAATTTGATTTT+TGG | - | chr5_4:23459178-23459197 | Msa0844830:intron | 5.0% |
| AGACGGAGGGAGTAATTACG+TGG | + | chr5_4:23456463-23456482 | None:intergenic | 50.0% | |
| CTCCTATCGCTCTCATCTCT+CGG | - | chr5_4:23456838-23456857 | Msa0844830:CDS | 50.0% | |
| ! | TGGTGGGTCGGACAAAATCA+CGG | + | chr5_4:23459406-23459425 | None:intergenic | 50.0% |
| TATGAAGCACGGACACTCCT+CGG | - | chr5_4:23459466-23459485 | Msa0844830:intron | 50.0% | |
| !! | TACAAGTGTCGGTGTCGTGT+CGG | + | chr5_4:23459523-23459542 | None:intergenic | 50.0% |
| TCCTCCTCCAAAACCGAAAG+TGG | - | chr5_4:23460262-23460281 | Msa0844830:intron | 50.0% | |
| !!! | TCCACTTTCGGTTTTGGAGG+AGG | + | chr5_4:23460266-23460285 | None:intergenic | 50.0% |
| TTTCCACCACGCTATTTGGG+TGG | - | chr5_4:23460294-23460313 | Msa0844830:intron | 50.0% | |
| CAGCAATTCTCCGCACTATC+GGG | - | chr5_4:23460377-23460396 | Msa0844830:intron | 50.0% | |
| AGCAATTCTCCGCACTATCG+GGG | - | chr5_4:23460378-23460397 | Msa0844830:intron | 50.0% | |
| CAACATGATCCCCGATAGTG+CGG | + | chr5_4:23460390-23460409 | None:intergenic | 50.0% | |
| CACTATCGGGGATCATGTTG+TGG | - | chr5_4:23460390-23460409 | Msa0844830:intron | 50.0% | |
| ! | CTCCTTGGCTAGGTTTTTCC+TGG | - | chr5_4:23460816-23460835 | Msa0844830:intron | 50.0% |
| GTCCAGGAAAAACCTAGCCA+AGG | + | chr5_4:23460821-23460840 | None:intergenic | 50.0% | |
| GTTGCGTATAGCCATAGTCC+AGG | + | chr5_4:23460837-23460856 | None:intergenic | 50.0% | |
| CTATGGCTATACGCAACGAG+AGG | - | chr5_4:23460840-23460859 | Msa0844830:intron | 50.0% | |
| GAGAGGAGCTGAGATTTCCA+GGG | - | chr5_4:23460857-23460876 | Msa0844830:intron | 50.0% | |
| CCAGAAAGTGAATCAGCAGG+AGG | + | chr5_4:23460910-23460929 | None:intergenic | 50.0% | |
| !! | CCTCCTGCTGATTCACTTTC+TGG | - | chr5_4:23460907-23460926 | Msa0844830:intron | 50.0% |
| CTGCCAGAAAGTGAATCAGC+AGG | + | chr5_4:23460913-23460932 | None:intergenic | 50.0% | |
| ! | GCTGATTCACTTTCTGGCAG+TGG | - | chr5_4:23460913-23460932 | Msa0844830:intron | 50.0% |
| TCAGATGAGTCCGCAAACTC+AGG | - | chr5_4:23460990-23461009 | Msa0844830:intron | 50.0% | |
| GTCCGCAAACTCAGGTATGT+TGG | - | chr5_4:23460998-23461017 | Msa0844830:intron | 50.0% | |
| TTTGCTGGAGAAGGCCATCA+GGG | + | chr5_4:23462564-23462583 | None:intergenic | 50.0% | |
| CCTCAAAACCATCCCTCCTA+TGG | + | chr5_4:23463099-23463118 | None:intergenic | 50.0% | |
| !! | CCATAGGAGGGATGGTTTTG+AGG | - | chr5_4:23463096-23463115 | Msa0844830:intron | 50.0% |
| ! | GATCTTTGAGAGCACGTCCA+AGG | - | chr5_4:23463135-23463154 | Msa0844830:intron | 50.0% |
| TAGCAGAGTAGGCTCTTAGG+AGG | - | chr5_4:23463165-23463184 | Msa0844830:intron | 50.0% | |
| CACCGAGAGATGAGAGCGAT+AGG | + | chr5_4:23456843-23456862 | None:intergenic | 55.0% | |
| TGGGTCGGACAAAATCACGG+TGG | + | chr5_4:23459403-23459422 | None:intergenic | 55.0% | |
| CACGTATACGGACACGGACA+CGG | + | chr5_4:23459601-23459620 | None:intergenic | 55.0% | |
| !! | GGGTCCACTTTCGGTTTTGG+AGG | + | chr5_4:23460269-23460288 | None:intergenic | 55.0% |
| TCACCACCCAAATAGCGTGG+TGG | + | chr5_4:23460300-23460319 | None:intergenic | 55.0% | |
| ACGTCACCACCCAAATAGCG+TGG | + | chr5_4:23460303-23460322 | None:intergenic | 55.0% | |
| GACCATGAGTGAGACTGCGT+TGG | - | chr5_4:23460344-23460363 | Msa0844830:intron | 55.0% | |
| GACCAACGCAGTCTCACTCA+TGG | + | chr5_4:23460349-23460368 | None:intergenic | 55.0% | |
| GGGGATCATGTTGTGGTCTG+CGG | - | chr5_4:23460397-23460416 | Msa0844830:intron | 55.0% | |
| GGGATCATGTTGTGGTCTGC+GGG | - | chr5_4:23460398-23460417 | Msa0844830:intron | 55.0% | |
| CGAGAGGAGCTGAGATTTCC+AGG | - | chr5_4:23460856-23460875 | Msa0844830:intron | 55.0% | |
| ! | TCACTTTCTGGCAGTGGCAG+TGG | - | chr5_4:23460919-23460938 | Msa0844830:intron | 55.0% |
| GAGAGAGTGAGTATGCTGCG+TGG | - | chr5_4:23462032-23462051 | Msa0844830:intron | 55.0% | |
| GCTGCGTGGACGCTAGTAAA+TGG | - | chr5_4:23462046-23462065 | Msa0844830:intron | 55.0% | |
| TCAGGGCTCACTGGAAATGG+AGG | + | chr5_4:23462547-23462566 | None:intergenic | 55.0% | |
| CCATCAGGGCTCACTGGAAA+TGG | + | chr5_4:23462550-23462569 | None:intergenic | 55.0% | |
| CCATTTCCAGTGAGCCCTGA+TGG | - | chr5_4:23462547-23462566 | Msa0844830:intron | 55.0% | |
| CTTTGCTGGAGAAGGCCATC+AGG | + | chr5_4:23462565-23462584 | None:intergenic | 55.0% | |
| !! | CCTCGGTGCCATCTCACTCA+TGG | + | chr5_4:23456366-23456385 | None:intergenic | 60.0% |
| CCATGAGTGAGATGGCACCG+AGG | - | chr5_4:23456363-23456382 | Msa0844830:CDS | 60.0% | |
| TGCAAGCACGGTCAGCTGCA+CGG | + | chr5_4:23458586-23458605 | None:intergenic | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | - | chr5_4:23459472-23459491 | Msa0844830:intron | 60.0% | |
| ! | CGGACACTCCTCGGATTAGG+CGG | - | chr5_4:23459475-23459494 | Msa0844830:intron | 60.0% |
| ! | GGACACTCCTCGGATTAGGC+GGG | - | chr5_4:23459476-23459495 | Msa0844830:intron | 60.0% |
| TCGTGTCGGACCGTCAGTGT+CGG | + | chr5_4:23459509-23459528 | None:intergenic | 60.0% | |
| GGCAGTGGCAGTGGCATGAA+TGG | - | chr5_4:23460928-23460947 | Msa0844830:intron | 60.0% | |
| AGAAGGCCATCAGGGCTCAC+TGG | + | chr5_4:23462556-23462575 | None:intergenic | 60.0% | |
| TGTCGGACCCGCCTAATCCG+AGG | + | chr5_4:23459486-23459505 | None:intergenic | 65.0% | |
| GGGTCCGACACCGACACTGA+CGG | - | chr5_4:23459496-23459515 | Msa0844830:intron | 65.0% | |
| !! | CGGACCGTCAGTGTCGGTGT+CGG | + | chr5_4:23459503-23459522 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 23455562 | 23463397 | 23455562 | ID=Msa0844830;Name=Msa0844830 |
| chr5_4 | mRNA | 23455562 | 23463397 | 23455562 | ID=Msa0844830-mRNA-1;Parent=Msa0844830;Name=Msa0844830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.85|0.75|1|0.71|0.75|8|214|451 |
| chr5_4 | exon | 23455562 | 23455874 | 23455562 | ID=Msa0844830-mRNA-1:exon:9568;Parent=Msa0844830-mRNA-1 |
| chr5_4 | exon | 23456248 | 23456402 | 23456248 | ID=Msa0844830-mRNA-1:exon:9567;Parent=Msa0844830-mRNA-1 |
| chr5_4 | exon | 23456763 | 23456926 | 23456763 | ID=Msa0844830-mRNA-1:exon:9566;Parent=Msa0844830-mRNA-1 |
| chr5_4 | exon | 23457015 | 23457136 | 23457015 | ID=Msa0844830-mRNA-1:exon:9565;Parent=Msa0844830-mRNA-1 |
| chr5_4 | exon | 23457948 | 23458163 | 23457948 | ID=Msa0844830-mRNA-1:exon:9564;Parent=Msa0844830-mRNA-1 |
| chr5_4 | exon | 23458266 | 23458415 | 23458266 | ID=Msa0844830-mRNA-1:exon:9563;Parent=Msa0844830-mRNA-1 |
| chr5_4 | exon | 23459984 | 23460220 | 23459984 | ID=Msa0844830-mRNA-1:exon:9562;Parent=Msa0844830-mRNA-1 |
| chr5_4 | exon | 23463185 | 23463397 | 23463185 | ID=Msa0844830-mRNA-1:exon:9561;Parent=Msa0844830-mRNA-1 |
| chr5_4 | CDS | 23463185 | 23463397 | 23463185 | ID=Msa0844830-mRNA-1:cds;Parent=Msa0844830-mRNA-1 |
| chr5_4 | CDS | 23459984 | 23460220 | 23459984 | ID=Msa0844830-mRNA-1:cds;Parent=Msa0844830-mRNA-1 |
| chr5_4 | CDS | 23458266 | 23458415 | 23458266 | ID=Msa0844830-mRNA-1:cds;Parent=Msa0844830-mRNA-1 |
| chr5_4 | CDS | 23457948 | 23458163 | 23457948 | ID=Msa0844830-mRNA-1:cds;Parent=Msa0844830-mRNA-1 |
| chr5_4 | CDS | 23457015 | 23457136 | 23457015 | ID=Msa0844830-mRNA-1:cds;Parent=Msa0844830-mRNA-1 |
| chr5_4 | CDS | 23456763 | 23456926 | 23456763 | ID=Msa0844830-mRNA-1:cds;Parent=Msa0844830-mRNA-1 |
| chr5_4 | CDS | 23456248 | 23456402 | 23456248 | ID=Msa0844830-mRNA-1:cds;Parent=Msa0844830-mRNA-1 |
| chr5_4 | CDS | 23455776 | 23455874 | 23455776 | ID=Msa0844830-mRNA-1:cds;Parent=Msa0844830-mRNA-1 |
| chr5_4 | three_prime_UTR | 23455562 | 23455775 | 23455562 | ID=Msa0844830-mRNA-1:three_prime_utr;Parent=Msa0844830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
