Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276100 | XP_013462834.1 | 99.153 | 118 | 1 | 0 | 1 | 118 | 1 | 118 | 2.78e-80 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276100 | sp|M1C146|ATG8C_SOLTU | 85.593 | 118 | 17 | 0 | 1 | 118 | 1 | 118 | 1.23e-73 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276100 | I3S7J4 | 99.153 | 118 | 1 | 0 | 1 | 118 | 1 | 118 | 1.33e-80 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0276100 | 0.837432 | 5.216848e-57 | -8.615850e-47 |
| Msa0010490 | Msa0276100 | 0.812414 | 4.291894e-51 | -8.615850e-47 |
| Msa0010500 | Msa0276100 | 0.804770 | 1.841747e-49 | -8.615850e-47 |
| Msa0015090 | Msa0276100 | 0.804700 | 1.904924e-49 | -8.615850e-47 |
| Msa0055580 | Msa0276100 | 0.804318 | 2.287990e-49 | -8.615850e-47 |
| Msa0082420 | Msa0276100 | 0.807423 | 5.092425e-50 | -8.615850e-47 |
| Msa0095360 | Msa0276100 | 0.801557 | 8.510467e-49 | -8.615850e-47 |
| Msa0095770 | Msa0276100 | 0.815167 | 1.061937e-51 | -8.615850e-47 |
| Msa0118540 | Msa0276100 | 0.804710 | 1.895721e-49 | -8.615850e-47 |
| Msa0196670 | Msa0276100 | 0.919203 | 6.033238e-87 | -8.615850e-47 |
| Msa0232790 | Msa0276100 | 0.815588 | 8.561378e-52 | -8.615850e-47 |
| Msa0237320 | Msa0276100 | 0.801808 | 7.560195e-49 | -8.615850e-47 |
| Msa0274740 | Msa0276100 | 0.803828 | 2.893074e-49 | -8.615850e-47 |
| Msa0276100 | Msa0385500 | 0.804205 | 2.415777e-49 | -8.615850e-47 |
| Msa0276100 | Msa0439980 | 0.827291 | 1.696980e-54 | -8.615850e-47 |
| Msa0276100 | Msa0485710 | 0.832805 | 7.667053e-56 | -8.615850e-47 |
| Msa0276100 | Msa0486820 | 0.802833 | 4.649758e-49 | -8.615850e-47 |
| Msa0276100 | Msa0527740 | 0.815126 | 1.084749e-51 | -8.615850e-47 |
| Msa0276100 | Msa0542560 | 0.828934 | 6.820005e-55 | -8.615850e-47 |
| Msa0276100 | Msa0566350 | 0.805892 | 1.071595e-49 | -8.615850e-47 |
| Msa0276100 | Msa0574930 | 0.819501 | 1.123646e-52 | -8.615850e-47 |
| Msa0276100 | Msa0604290 | 0.804075 | 2.570691e-49 | -8.615850e-47 |
| Msa0276100 | Msa0605510 | 0.835569 | 1.554688e-56 | -8.615850e-47 |
| Msa0276100 | Msa0646470 | 0.837602 | 4.718704e-57 | -8.615850e-47 |
| Msa0276100 | Msa0657120 | 0.842846 | 2.014619e-58 | -8.615850e-47 |
| Msa0276100 | Msa0689320 | 0.819185 | 1.326375e-52 | -8.615850e-47 |
| Msa0276100 | Msa0701100 | 0.850769 | 1.370273e-60 | -8.615850e-47 |
| Msa0276100 | Msa0719180 | 0.818904 | 1.536351e-52 | -8.615850e-47 |
| Msa0276100 | Msa0732050 | 0.807182 | 5.726761e-50 | -8.615850e-47 |
| Msa0276100 | Msa0746170 | 0.820496 | 6.652374e-53 | -8.615850e-47 |
| Msa0276100 | Msa0746210 | 0.812146 | 4.910495e-51 | -8.615850e-47 |
| Msa0276100 | Msa0775560 | 0.801524 | 8.644751e-49 | -8.615850e-47 |
| Msa0276100 | Msa0808090 | 0.832403 | 9.644606e-56 | -8.615850e-47 |
| Msa0276100 | Msa0838370 | 0.828977 | 6.659074e-55 | -8.615850e-47 |
| Msa0276100 | Msa0844830 | 0.811274 | 7.598413e-51 | -8.615850e-47 |
| Msa0276100 | Msa0853440 | 0.807243 | 5.560389e-50 | -8.615850e-47 |
| Msa0276100 | Msa0880810 | 0.802159 | 6.402773e-49 | -8.615850e-47 |
| Msa0276100 | Msa1013070 | 0.802299 | 5.992815e-49 | -8.615850e-47 |
| Msa0276100 | Msa1022030 | 0.804816 | 1.801694e-49 | -8.615850e-47 |
| Msa0276100 | Msa1023310 | 0.806332 | 8.660684e-50 | -8.615850e-47 |
| Msa0276100 | Msa1024710 | 0.842094 | 3.188779e-58 | -8.615850e-47 |
| Msa0276100 | Msa1062040 | 0.872564 | 2.885878e-67 | -8.615850e-47 |
| Msa0276100 | Msa1070520 | 0.809529 | 1.808584e-50 | -8.615850e-47 |
| Msa0276100 | Msa1082360 | 0.824182 | 9.273367e-54 | -8.615850e-47 |
| Msa0276100 | Msa1096950 | 0.805530 | 1.277007e-49 | -8.615850e-47 |
| Msa0276100 | Msa1107200 | 0.856028 | 4.242114e-62 | -8.615850e-47 |
| Msa0276100 | Msa1150780 | 0.836809 | 7.528854e-57 | -8.615850e-47 |
| Msa0276100 | Msa1166090 | -0.804977 | 1.667206e-49 | -8.615850e-47 |
| Msa0276100 | Msa1208380 | 0.854184 | 1.457604e-61 | -8.615850e-47 |
| Msa0276100 | Msa1229480 | 0.823039 | 1.716409e-53 | -8.615850e-47 |
| Msa0276100 | Msa1240970 | 0.809802 | 1.580462e-50 | -8.615850e-47 |
| Msa0276100 | Msa1277410 | 0.804405 | 2.194564e-49 | -8.615850e-47 |
| Msa0276100 | Msa1279100 | 0.827988 | 1.154349e-54 | -8.615850e-47 |
| Msa0276100 | Msa1307180 | 0.814882 | 1.228194e-51 | -8.615850e-47 |
| Msa0276100 | Msa1316360 | 0.823879 | 1.092157e-53 | -8.615850e-47 |
| Msa0276100 | Msa1352890 | 0.824715 | 6.945623e-54 | -8.615850e-47 |
| Msa0276100 | Msa1382020 | 0.840239 | 9.798967e-58 | -8.615850e-47 |
| Msa0276100 | Msa1396400 | -0.806115 | 9.619227e-50 | -8.615850e-47 |
| Msa0276100 | Msa1407760 | 0.824778 | 6.710699e-54 | -8.615850e-47 |
| Msa0276100 | Msa1421210 | 0.804405 | 2.194897e-49 | -8.615850e-47 |
| Msa0276100 | Msa1437730 | 0.800593 | 1.339932e-48 | -8.615850e-47 |
| Msa0276100 | Msa1438840 | 0.837526 | 4.934013e-57 | -8.615850e-47 |
| Msa0276100 | Msa1447890 | 0.800534 | 1.378051e-48 | -8.615850e-47 |
| Msa0276100 | Msa1458290 | 0.802769 | 4.793946e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276100 | MtrunA17_Chr2g0288531 | 99.153 | 118 | 1 | 0 | 1 | 118 | 1 | 118 | 2.56e-84 | 241 |
| Msa0276100 | MtrunA17_Chr4g0024721 | 80.342 | 117 | 23 | 0 | 1 | 117 | 1 | 117 | 3.50e-71 | 208 |
| Msa0276100 | MtrunA17_Chr2g0322571 | 80.342 | 117 | 23 | 0 | 1 | 117 | 1 | 117 | 1.49e-70 | 206 |
| Msa0276100 | MtrunA17_Chr4g0056301 | 76.923 | 117 | 27 | 0 | 1 | 117 | 1 | 117 | 3.85e-66 | 195 |
| Msa0276100 | MtrunA17_Chr4g0019141 | 72.174 | 115 | 30 | 1 | 1 | 113 | 1 | 115 | 4.27e-55 | 167 |
| Msa0276100 | MtrunA17_Chr7g0260981 | 55.752 | 113 | 50 | 0 | 5 | 117 | 6 | 118 | 2.21e-46 | 145 |
| Msa0276100 | MtrunA17_Chr4g0069171 | 54.867 | 113 | 51 | 0 | 5 | 117 | 6 | 118 | 3.87e-46 | 145 |
| Msa0276100 | MtrunA17_Chr1g0194141 | 55.357 | 112 | 50 | 0 | 6 | 117 | 7 | 118 | 3.32e-42 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276100 | AT4G21980.2 | 83.898 | 118 | 19 | 0 | 1 | 118 | 16 | 133 | 3.69e-73 | 214 |
| Msa0276100 | AT4G21980.1 | 83.898 | 118 | 19 | 0 | 1 | 118 | 1 | 118 | 4.13e-73 | 213 |
| Msa0276100 | AT1G62040.1 | 82.051 | 117 | 21 | 0 | 1 | 117 | 1 | 117 | 1.21e-71 | 209 |
| Msa0276100 | AT4G04620.3 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 5.22e-71 | 208 |
| Msa0276100 | AT4G04620.2 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 5.22e-71 | 208 |
| Msa0276100 | AT4G04620.1 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 5.22e-71 | 208 |
| Msa0276100 | AT2G05630.1 | 78.632 | 117 | 25 | 0 | 1 | 117 | 1 | 117 | 6.74e-69 | 202 |
| Msa0276100 | AT4G16520.2 | 76.068 | 117 | 28 | 0 | 1 | 117 | 1 | 117 | 2.75e-65 | 194 |
| Msa0276100 | AT4G16520.1 | 76.068 | 117 | 28 | 0 | 1 | 117 | 1 | 117 | 2.75e-65 | 194 |
| Msa0276100 | AT3G60640.1 | 73.729 | 118 | 31 | 0 | 1 | 118 | 1 | 118 | 1.66e-64 | 191 |
| Msa0276100 | AT2G05630.2 | 80.189 | 106 | 21 | 0 | 12 | 117 | 56 | 161 | 9.45e-63 | 189 |
| Msa0276100 | AT2G45170.2 | 72.269 | 119 | 32 | 1 | 1 | 118 | 1 | 119 | 2.67e-62 | 186 |
| Msa0276100 | AT2G45170.1 | 72.269 | 119 | 32 | 1 | 1 | 118 | 1 | 119 | 2.67e-62 | 186 |
| Msa0276100 | AT1G62040.2 | 79.775 | 89 | 18 | 0 | 1 | 89 | 1 | 89 | 1.17e-49 | 153 |
| Msa0276100 | AT4G16520.3 | 78.409 | 88 | 19 | 0 | 30 | 117 | 30 | 117 | 1.31e-47 | 149 |
| Msa0276100 | AT3G15580.1 | 57.522 | 113 | 48 | 0 | 5 | 117 | 3 | 115 | 5.60e-45 | 142 |
| Msa0276100 | AT3G06420.1 | 53.982 | 113 | 52 | 0 | 5 | 117 | 7 | 119 | 1.04e-41 | 134 |
Find 46 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAAGATCATCTACTTTA+TGG | 0.154043 | 2_3:+8326992 | Msa0276100:three_prime_UTR |
| GTTTATATTGAATTGAAATT+AGG | 0.168797 | 2_3:-8324608 | None:intergenic |
| TAATCGATGAATTTAGATTT+TGG | 0.186511 | 2_3:+8326936 | Msa0276100:three_prime_UTR |
| TGATCGAATCGAAGTGAAAT+TGG | 0.243113 | 2_3:-8324652 | None:intergenic |
| CATCCTTATGTTCTTCATAA+AGG | 0.263042 | 2_3:-8326722 | None:intergenic |
| AATTGAAATTAGGGTTTGTT+TGG | 0.264691 | 2_3:-8324598 | None:intergenic |
| AATTAGGGTTTGTTTGGGTT+TGG | 0.273530 | 2_3:-8324592 | None:intergenic |
| TTTATATTGAATTGAAATTA+GGG | 0.282883 | 2_3:-8324607 | None:intergenic |
| ATTAGGGTTTGTTTGGGTTT+GGG | 0.308222 | 2_3:-8324591 | None:intergenic |
| ATCCTTATGTTCTTCATAAA+GGG | 0.337341 | 2_3:-8326721 | None:intergenic |
| TTCAAGACTCAACATCCTTT+CGG | 0.352308 | 2_3:+8324837 | Msa0276100:CDS |
| GATCGAATCGAAGTGAAATT+GGG | 0.396149 | 2_3:-8324651 | None:intergenic |
| ATTGAAATTAGGGTTTGTTT+GGG | 0.407112 | 2_3:-8324597 | None:intergenic |
| GATGAAAGACGAAAGAATAA+TGG | 0.410914 | 2_3:-8324676 | None:intergenic |
| AATCTTACAGGTACTCTATC+AGG | 0.411891 | 2_3:-8325481 | None:intergenic |
| GAATACAGAATAGTATATAT+AGG | 0.420870 | 2_3:-8327933 | None:intergenic |
| GTGTTGTGTGCAGGTGATTG+TGG | 0.446452 | 2_3:+8325570 | Msa0276100:intron |
| TACAGTGGAGAGAACACCTT+TGG | 0.449519 | 2_3:+8326768 | Msa0276100:CDS |
| GTCCCAGCTGACTTGTCTGT+TGG | 0.460647 | 2_3:+8326517 | Msa0276100:CDS |
| TGCCCTTTATGAAGAACATA+AGG | 0.471436 | 2_3:+8326719 | Msa0276100:CDS |
| AATTTGAACTGTTATGTAGC+TGG | 0.483284 | 2_3:+8327112 | Msa0276100:three_prime_UTR |
| GAAAGGATGTTGAGTCTTGA+AGG | 0.484284 | 2_3:-8324835 | None:intergenic |
| TGATAACAGCGAAGCGCGGT+TGG | 0.488813 | 2_3:+8327028 | Msa0276100:three_prime_UTR |
| GAAAACACTCTACCTCCAAC+TGG | 0.492327 | 2_3:+8326607 | Msa0276100:CDS |
| GATAATGCATGTTTGAATTG+TGG | 0.509621 | 2_3:+8326958 | Msa0276100:three_prime_UTR |
| TGACCAACAGACAAGTCAGC+TGG | 0.519715 | 2_3:-8326520 | None:intergenic |
| ATGTTTGAATTGTGGTTGCT+TGG | 0.526447 | 2_3:+8326966 | Msa0276100:three_prime_UTR |
| GAGAGCTATATACAGAAAGA+AGG | 0.536911 | 2_3:-8326817 | None:intergenic |
| GCTGGATACTTACCAGTTGG+AGG | 0.558063 | 2_3:-8326619 | None:intergenic |
| AATTAAGCTCAGTGCAGAGA+AGG | 0.558355 | 2_3:+8326567 | Msa0276100:CDS |
| CAGGTGATTGTGGAGAAAGC+TGG | 0.570859 | 2_3:+8325580 | Msa0276100:intron |
| GTATATGGCAGAAAGAAGAC+AGG | 0.574538 | 2_3:+8325429 | Msa0276100:intron |
| TATCTCAAATTATGCCTAGT+GGG | 0.579404 | 2_3:-8326793 | None:intergenic |
| GAACACCTTTGGTTCCCACT+AGG | 0.580132 | 2_3:+8326779 | Msa0276100:CDS |
| TTATGCCTAGTGGGAACCAA+AGG | 0.589647 | 2_3:-8326784 | None:intergenic |
| AAAGGTGTTCTCTCCACTGT+AGG | 0.593040 | 2_3:-8326766 | None:intergenic |
| GCAGTCCATTGTCAAATACA+TGG | 0.593173 | 2_3:+8326846 | Msa0276100:three_prime_UTR |
| ATTTGCCATGTATTTGACAA+TGG | 0.595566 | 2_3:-8326851 | None:intergenic |
| TTATGAAGAACATAAGGATG+AGG | 0.600323 | 2_3:+8326725 | Msa0276100:CDS |
| GACCAACAGACAAGTCAGCT+GGG | 0.605256 | 2_3:-8326519 | None:intergenic |
| ATCGAATCGAAGTGAAATTG+GGG | 0.606503 | 2_3:-8324650 | None:intergenic |
| GAAGAACATAAGGATGAGGA+TGG | 0.616176 | 2_3:+8326729 | Msa0276100:CDS |
| TTATCTCAAATTATGCCTAG+TGG | 0.627502 | 2_3:-8326794 | None:intergenic |
| CAGACAAGTCAGCTGGGACA+AGG | 0.641093 | 2_3:-8326513 | None:intergenic |
| TTTCTTTACATGACCTACAG+TGG | 0.650715 | 2_3:+8326753 | Msa0276100:CDS |
| TTAATGATAACAGCGAAGCG+CGG | 0.668116 | 2_3:+8327024 | Msa0276100:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTGAATTGAAATTA+GGG | - | chr2_3:8324610-8324629 | None:intergenic | 10.0% |
| !! | ACAGAATATTTAATATTAAT+CGG | - | chr2_3:8325872-8325891 | None:intergenic | 10.0% |
| !! | GTTTATATTGAATTGAAATT+AGG | - | chr2_3:8324611-8324630 | None:intergenic | 15.0% |
| !! | ATTAATAATAAATTACCGAA+AGG | - | chr2_3:8324855-8324874 | None:intergenic | 15.0% |
| !! | TATAACAAAGAATAGAAAAT+TGG | - | chr2_3:8325751-8325770 | None:intergenic | 15.0% |
| !! | GAATACAAAATAGTATATAT+AGG | - | chr2_3:8327244-8327263 | None:intergenic | 15.0% |
| !!! | TCAATTTTTAATCATGTCTA+AGG | + | chr2_3:8324809-8324828 | Msa0276100:exon | 20.0% |
| !!! | ATTTAGGGTTTTTTACTATA+CGG | + | chr2_3:8324999-8325018 | Msa0276100:intron | 20.0% |
| !!! | TAATGAAGTATTGCTAAATA+TGG | + | chr2_3:8325546-8325565 | Msa0276100:intron | 20.0% |
| !! | TGTTATATAAATTGAGTGTT+AGG | + | chr2_3:8325764-8325783 | Msa0276100:intron | 20.0% |
| !! | ATCTTAATAAAATATATGGC+AGG | - | chr2_3:8326093-8326112 | None:intergenic | 20.0% |
| !! | AATCAGAATTTAACAGAAAA+AGG | + | chr2_3:8326123-8326142 | Msa0276100:intron | 20.0% |
| !!! | TAATCGATGAATTTAGATTT+TGG | + | chr2_3:8326936-8326955 | Msa0276100:three_prime_UTR | 20.0% |
| !!! | ATAGTAATTTTTGATCAATG+TGG | + | chr2_3:8327404-8327423 | Msa0276100:intron | 20.0% |
| !! | ATTGAAATTAGGGTTTGTTT+GGG | - | chr2_3:8324600-8324619 | None:intergenic | 25.0% |
| !! | AATTGAAATTAGGGTTTGTT+TGG | - | chr2_3:8324601-8324620 | None:intergenic | 25.0% |
| ! | ACGGAAAAAGATTAGAAATT+TGG | - | chr2_3:8324753-8324772 | None:intergenic | 25.0% |
| ! | ATTCATCTGATTGAAATTGT+TGG | + | chr2_3:8324959-8324978 | Msa0276100:intron | 25.0% |
| ! | TTCATCTGATTGAAATTGTT+GGG | + | chr2_3:8324960-8324979 | Msa0276100:intron | 25.0% |
| ! | ACTGTGTGATGATTAAATTT+AGG | + | chr2_3:8324983-8325002 | Msa0276100:intron | 25.0% |
| ! | CTGTGTGATGATTAAATTTA+GGG | + | chr2_3:8324984-8325003 | Msa0276100:intron | 25.0% |
| ! | AATTTCATCGAATAACTAAC+AGG | - | chr2_3:8325046-8325065 | None:intergenic | 25.0% |
| ! | TTGCTTATAATAGTGATCAT+AGG | + | chr2_3:8325065-8325084 | Msa0276100:intron | 25.0% |
| ! | TGCTTATAATAGTGATCATA+GGG | + | chr2_3:8325066-8325085 | Msa0276100:intron | 25.0% |
| !! | TTTGAAAACCCTTTGTTTAT+TGG | + | chr2_3:8325382-8325401 | Msa0276100:intron | 25.0% |
| ! | ATTCAAGTCCAATAAACAAA+GGG | - | chr2_3:8325393-8325412 | None:intergenic | 25.0% |
| ! | TATTCAAGTCCAATAAACAA+AGG | - | chr2_3:8325394-8325413 | None:intergenic | 25.0% |
| !! | ACAGTGTTATGTTTTGTATA+TGG | + | chr2_3:8325414-8325433 | Msa0276100:intron | 25.0% |
| ! | CAGGACAAAATAATATTCTT+AGG | - | chr2_3:8325687-8325706 | None:intergenic | 25.0% |
| !! | ATTTTGTCCTGAATTTTGTT+CGG | + | chr2_3:8325696-8325715 | Msa0276100:intron | 25.0% |
| !! | GATTTCTTGAAGATTTTGAA+AGG | + | chr2_3:8325723-8325742 | Msa0276100:intron | 25.0% |
| !! | TCTGTGTTTTGTAATATTGT+TGG | + | chr2_3:8325887-8325906 | Msa0276100:intron | 25.0% |
| !! | TTCTTTTTGCATATTCGATT+TGG | + | chr2_3:8325969-8325988 | Msa0276100:intron | 25.0% |
| !!! | AATCTTGTTTTTTGCCAATT+TGG | + | chr2_3:8326649-8326668 | Msa0276100:intron | 25.0% |
| ! | GTTAATAATCACAACCAAAT+TGG | - | chr2_3:8326666-8326685 | None:intergenic | 25.0% |
| ! | ATCCTTATGTTCTTCATAAA+GGG | - | chr2_3:8326724-8326743 | None:intergenic | 25.0% |
| ! | ATACAACCCAAATTATCATT+GGG | - | chr2_3:8327332-8327351 | None:intergenic | 25.0% |
| GATGAAAGACGAAAGAATAA+TGG | - | chr2_3:8324679-8324698 | None:intergenic | 30.0% | |
| TCTGCAAAATAGAAAGAGAA+CGG | - | chr2_3:8324772-8324791 | None:intergenic | 30.0% | |
| CATAGTGAGTATAATCTTAC+AGG | - | chr2_3:8325496-8325515 | None:intergenic | 30.0% | |
| GAAGGTAGTAAAGTATGATA+TGG | + | chr2_3:8325799-8325818 | Msa0276100:intron | 30.0% | |
| ATTGTTGGAAATATGAAGCA+TGG | + | chr2_3:8325902-8325921 | Msa0276100:intron | 30.0% | |
| ! | AGAACATCAATTTTGCATTC+TGG | - | chr2_3:8325953-8325972 | None:intergenic | 30.0% |
| CTAAAGTGACTAGCAATTTA+AGG | - | chr2_3:8326024-8326043 | None:intergenic | 30.0% | |
| !! | TCTGGTAATTTGGTTTGAAA+AGG | + | chr2_3:8326199-8326218 | Msa0276100:intron | 30.0% |
| !! | CTGGTAATTTGGTTTGAAAA+GGG | + | chr2_3:8326200-8326219 | Msa0276100:intron | 30.0% |
| TTCTTCAGATTTGTCCATAT+CGG | + | chr2_3:8326277-8326296 | Msa0276100:intron | 30.0% | |
| !! | TATTCTTTGTGTGTTGCTTT+AGG | + | chr2_3:8326488-8326507 | Msa0276100:intron | 30.0% |
| GCAAAAAACAAGATTTCGTA+TGG | - | chr2_3:8326644-8326663 | None:intergenic | 30.0% | |
| CATCCTTATGTTCTTCATAA+AGG | - | chr2_3:8326725-8326744 | None:intergenic | 30.0% | |
| TTATGAAGAACATAAGGATG+AGG | + | chr2_3:8326725-8326744 | Msa0276100:CDS | 30.0% | |
| TATCTCAAATTATGCCTAGT+GGG | - | chr2_3:8326796-8326815 | None:intergenic | 30.0% | |
| TTATCTCAAATTATGCCTAG+TGG | - | chr2_3:8326797-8326816 | None:intergenic | 30.0% | |
| ATTTGCCATGTATTTGACAA+TGG | - | chr2_3:8326854-8326873 | None:intergenic | 30.0% | |
| GATAATGCATGTTTGAATTG+TGG | + | chr2_3:8326958-8326977 | Msa0276100:three_prime_UTR | 30.0% | |
| CGATAAGATCATCTACTTTA+TGG | + | chr2_3:8326992-8327011 | Msa0276100:three_prime_UTR | 30.0% | |
| AATTTGAACTGTTATGTAGC+TGG | + | chr2_3:8327112-8327131 | Msa0276100:three_prime_UTR | 30.0% | |
| TACCTTCCCAATGATAATTT+GGG | + | chr2_3:8327323-8327342 | Msa0276100:intron | 30.0% | |
| GATACAACCCAAATTATCAT+TGG | - | chr2_3:8327333-8327352 | None:intergenic | 30.0% | |
| ACATTCTTATGTGAATTGTG+CGG | + | chr2_3:8327585-8327604 | Msa0276100:intron | 30.0% | |
| ! | ATTGTTATTCACTTGTGAGA+AGG | - | chr2_3:8327681-8327700 | None:intergenic | 30.0% |
| AATTTGAACTGTTATGTAGC+TGG | + | chr2_3:8327112-8327131 | Msa0276100:three_prime_UTR | 30.0% | |
| ! | ATTAGGGTTTGTTTGGGTTT+GGG | - | chr2_3:8324594-8324613 | None:intergenic | 35.0% |
| ! | AATTAGGGTTTGTTTGGGTT+TGG | - | chr2_3:8324595-8324614 | None:intergenic | 35.0% |
| ATCGAATCGAAGTGAAATTG+GGG | - | chr2_3:8324653-8324672 | None:intergenic | 35.0% | |
| GATCGAATCGAAGTGAAATT+GGG | - | chr2_3:8324654-8324673 | None:intergenic | 35.0% | |
| TGATCGAATCGAAGTGAAAT+TGG | - | chr2_3:8324655-8324674 | None:intergenic | 35.0% | |
| TATTCTTTCGTCTTTCATCG+TGG | + | chr2_3:8324680-8324699 | Msa0276100:intron | 35.0% | |
| ATTCTTTCGTCTTTCATCGT+GGG | + | chr2_3:8324681-8324700 | Msa0276100:intron | 35.0% | |
| TTCAAGACTCAACATCCTTT+CGG | + | chr2_3:8324837-8324856 | Msa0276100:CDS | 35.0% | |
| AATCTTACAGGTACTCTATC+AGG | - | chr2_3:8325484-8325503 | None:intergenic | 35.0% | |
| ATCAAGACCGAACAAAATTC+AGG | - | chr2_3:8325706-8325725 | None:intergenic | 35.0% | |
| AAACCAGTATCAACTCAACA+AGG | - | chr2_3:8325830-8325849 | None:intergenic | 35.0% | |
| ! | TCAATTTTGCATTCTGGTGT+TGG | - | chr2_3:8325947-8325966 | None:intergenic | 35.0% |
| !! | ATATTCGATTTGGCCAAGTA+TGG | + | chr2_3:8325979-8325998 | Msa0276100:intron | 35.0% |
| !! | TATTCGATTTGGCCAAGTAT+GGG | + | chr2_3:8325980-8325999 | Msa0276100:intron | 35.0% |
| GTGACTAGCAATTTAAGGAT+GGG | - | chr2_3:8326019-8326038 | None:intergenic | 35.0% | |
| AGTGACTAGCAATTTAAGGA+TGG | - | chr2_3:8326020-8326039 | None:intergenic | 35.0% | |
| TTAGTGTTAGATTTGTCCTC+TGG | + | chr2_3:8326040-8326059 | Msa0276100:intron | 35.0% | |
| AGTCCAAAGATGTAATGATG+TGG | - | chr2_3:8326068-8326087 | None:intergenic | 35.0% | |
| AATATTAAGCCAAGTCTCTG+CGG | + | chr2_3:8326171-8326190 | Msa0276100:intron | 35.0% | |
| !! | TGCGGATATTTCTGGTAATT+TGG | + | chr2_3:8326189-8326208 | Msa0276100:intron | 35.0% |
| GAATACTGCATATGCATATG+TGG | + | chr2_3:8326222-8326241 | Msa0276100:intron | 35.0% | |
| TTAAACTAGAGTCTCATCTG+GGG | - | chr2_3:8326315-8326334 | None:intergenic | 35.0% | |
| GTTAAACTAGAGTCTCATCT+GGG | - | chr2_3:8326316-8326335 | None:intergenic | 35.0% | |
| TGTTAAACTAGAGTCTCATC+TGG | - | chr2_3:8326317-8326336 | None:intergenic | 35.0% | |
| ! | ACTCTAGTTTAACATCTTGC+TGG | + | chr2_3:8326323-8326342 | Msa0276100:intron | 35.0% |
| ! | CACTGCAAATTTTCATGCTT+TGG | + | chr2_3:8326449-8326468 | Msa0276100:intron | 35.0% |
| ! | TGCAAATTTTCATGCTTTGG+TGG | + | chr2_3:8326452-8326471 | Msa0276100:intron | 35.0% |
| !! | ATGCTTTGGTGGATTCTAAT+TGG | + | chr2_3:8326463-8326482 | Msa0276100:intron | 35.0% |
| ! | CACTGAGCTTAATTCTTTTG+CGG | - | chr2_3:8326561-8326580 | None:intergenic | 35.0% |
| AAAACAAGATTTCGTATGGC+TGG | - | chr2_3:8326640-8326659 | None:intergenic | 35.0% | |
| TGCCCTTTATGAAGAACATA+AGG | + | chr2_3:8326719-8326738 | Msa0276100:CDS | 35.0% | |
| TTTCTTTACATGACCTACAG+TGG | + | chr2_3:8326753-8326772 | Msa0276100:CDS | 35.0% | |
| GAGAGCTATATACAGAAAGA+AGG | - | chr2_3:8326820-8326839 | None:intergenic | 35.0% | |
| ATGTTTGAATTGTGGTTGCT+TGG | + | chr2_3:8326966-8326985 | Msa0276100:three_prime_UTR | 35.0% | |
| GTACCTTCCCAATGATAATT+TGG | + | chr2_3:8327322-8327341 | Msa0276100:intron | 35.0% | |
| AACCCAAATTATCATTGGGA+AGG | - | chr2_3:8327328-8327347 | None:intergenic | 35.0% | |
| AGTAACACTTTGTCTTGTGT+GGG | + | chr2_3:8327446-8327465 | Msa0276100:intron | 35.0% | |
| TGAAACGTAGTTAGACAAAG+TGG | - | chr2_3:8327479-8327498 | None:intergenic | 35.0% | |
| TTGTCTAACTACGTTTCATG+TGG | + | chr2_3:8327481-8327500 | Msa0276100:intron | 35.0% | |
| TGTCTAACTACGTTTCATGT+GGG | + | chr2_3:8327482-8327501 | Msa0276100:intron | 35.0% | |
| AAGAATGTAGCTAGACAAAG+TGG | - | chr2_3:8327573-8327592 | None:intergenic | 35.0% | |
| CATTCTTATGTGAATTGTGC+GGG | + | chr2_3:8327586-8327605 | Msa0276100:intron | 35.0% | |
| GAAAGGATGTTGAGTCTTGA+AGG | - | chr2_3:8324838-8324857 | None:intergenic | 40.0% | |
| GTGATTGATTGTTGCAGTGT+CGG | + | chr2_3:8325227-8325246 | Msa0276100:intron | 40.0% | |
| ! | TAGCGTTCTAAACACATGTG+TGG | - | chr2_3:8325340-8325359 | None:intergenic | 40.0% |
| GTATATGGCAGAAAGAAGAC+AGG | + | chr2_3:8325429-8325448 | Msa0276100:intron | 40.0% | |
| AAATATGGTGTGTTGTGTGC+AGG | + | chr2_3:8325561-8325580 | Msa0276100:intron | 40.0% | |
| !! | CATCCTTGTTGAGTTGATAC+TGG | + | chr2_3:8325824-8325843 | Msa0276100:intron | 40.0% |
| !! | ATTCGATTTGGCCAAGTATG+GGG | + | chr2_3:8325981-8326000 | Msa0276100:intron | 40.0% |
| ATAATACACTGCCCCATACT+TGG | - | chr2_3:8325995-8326014 | None:intergenic | 40.0% | |
| GCACCACATCATTACATCTT+TGG | + | chr2_3:8326062-8326081 | Msa0276100:intron | 40.0% | |
| GGTTAAGTTAACTGCCGATA+TGG | - | chr2_3:8326294-8326313 | None:intergenic | 40.0% | |
| GAAAATCAGACGATCAAGCT+TGG | + | chr2_3:8326383-8326402 | Msa0276100:intron | 40.0% | |
| AATTAAGCTCAGTGCAGAGA+AGG | + | chr2_3:8326567-8326586 | Msa0276100:CDS | 40.0% | |
| GAAGAACATAAGGATGAGGA+TGG | + | chr2_3:8326729-8326748 | Msa0276100:CDS | 40.0% | |
| GCAGTCCATTGTCAAATACA+TGG | + | chr2_3:8326846-8326865 | Msa0276100:three_prime_UTR | 40.0% | |
| TTAATGATAACAGCGAAGCG+CGG | + | chr2_3:8327024-8327043 | Msa0276100:three_prime_UTR | 40.0% | |
| GCTTCTTCTATCCACAAATC+AGG | + | chr2_3:8327358-8327377 | Msa0276100:intron | 40.0% | |
| ! | CATGATGAAGTCCTGATTTG+TGG | - | chr2_3:8327372-8327391 | None:intergenic | 40.0% |
| CAGGACTTCATCATGTGAAA+TGG | + | chr2_3:8327377-8327396 | Msa0276100:intron | 40.0% | |
| GAGTAACACTTTGTCTTGTG+TGG | + | chr2_3:8327445-8327464 | Msa0276100:intron | 40.0% | |
| AAGAACGTAGTTAGACGAAG+TGG | - | chr2_3:8327515-8327534 | None:intergenic | 40.0% | |
| TACGTTCTTACGCTAGTCAT+GGG | + | chr2_3:8327526-8327545 | Msa0276100:intron | 40.0% | |
| TGTTCTTACACGAGTCATGT+TGG | + | chr2_3:8327632-8327651 | Msa0276100:intron | 40.0% | |
| GAGAAGGTAGCTAGACAAAT+TGG | - | chr2_3:8327665-8327684 | None:intergenic | 40.0% | |
| TTAATGATAACAGCGAAGCG+CGG | + | chr2_3:8327024-8327043 | Msa0276100:three_prime_UTR | 40.0% | |
| TCTGACACCTCTTCAATTCG+AGG | + | chr2_3:8325306-8325325 | Msa0276100:intron | 45.0% | |
| ACCTCTTCAATTCGAGGTGT+TGG | + | chr2_3:8325312-8325331 | Msa0276100:intron | 45.0% | |
| ACCAACACCTCGAATTGAAG+AGG | - | chr2_3:8325316-8325335 | None:intergenic | 45.0% | |
| GTTAGGCTTGTAGCTAGTGA+AGG | + | chr2_3:8325781-8325800 | Msa0276100:intron | 45.0% | |
| ! | TTTGCATTCTGGTGTTGGAG+TGG | - | chr2_3:8325942-8325961 | None:intergenic | 45.0% |
| ! | ATGTAATGATGTGGTGCCAG+AGG | - | chr2_3:8326059-8326078 | None:intergenic | 45.0% |
| CAGAAATATCCGCAGAGACT+TGG | - | chr2_3:8326183-8326202 | None:intergenic | 45.0% | |
| CAAGTCTCTGCGGATATTTC+TGG | + | chr2_3:8326181-8326200 | Msa0276100:intron | 45.0% | |
| GAAAACACTCTACCTCCAAC+TGG | + | chr2_3:8326607-8326626 | Msa0276100:CDS | 45.0% | |
| ATGGCTGGATACTTACCAGT+TGG | - | chr2_3:8326625-8326644 | None:intergenic | 45.0% | |
| ATCAGAGCAGCTGTAACAAC+AGG | - | chr2_3:8326696-8326715 | None:intergenic | 45.0% | |
| !! | AAAGGTGTTCTCTCCACTGT+AGG | - | chr2_3:8326769-8326788 | None:intergenic | 45.0% |
| TACAGTGGAGAGAACACCTT+TGG | + | chr2_3:8326768-8326787 | Msa0276100:CDS | 45.0% | |
| TTATGCCTAGTGGGAACCAA+AGG | - | chr2_3:8326787-8326806 | None:intergenic | 45.0% | |
| GTACATGCAGAGAGAAAGTG+AGG | - | chr2_3:8327306-8327325 | None:intergenic | 45.0% | |
| CTACGTTCTTACGCTAGTCA+TGG | + | chr2_3:8327525-8327544 | Msa0276100:intron | 45.0% | |
| ACGTTCTTACGCTAGTCATG+GGG | + | chr2_3:8327527-8327546 | Msa0276100:intron | 45.0% | |
| !! | AAAAATCTTAATAAAATATA+TGG | - | chr2_3:8326097-8326116 | None:intergenic | 5.0% |
| GTGTCAGATGTCGACACATG+TGG | - | chr2_3:8325294-8325313 | None:intergenic | 50.0% | |
| GTGTTGTGTGCAGGTGATTG+TGG | + | chr2_3:8325570-8325589 | Msa0276100:intron | 50.0% | |
| CAGGTGATTGTGGAGAAAGC+TGG | + | chr2_3:8325580-8325599 | Msa0276100:intron | 50.0% | |
| GACCAACAGACAAGTCAGCT+GGG | - | chr2_3:8326522-8326541 | None:intergenic | 50.0% | |
| TGACCAACAGACAAGTCAGC+TGG | - | chr2_3:8326523-8326542 | None:intergenic | 50.0% | |
| GCTGGATACTTACCAGTTGG+AGG | - | chr2_3:8326622-8326641 | None:intergenic | 50.0% | |
| AGAGCAGCTGTAACAACAGG+AGG | - | chr2_3:8326693-8326712 | None:intergenic | 50.0% | |
| ! | GAACACCTTTGGTTCCCACT+AGG | + | chr2_3:8326779-8326798 | Msa0276100:CDS | 50.0% |
| CGTTCTTACGCTAGTCATGG+GGG | + | chr2_3:8327528-8327547 | Msa0276100:intron | 50.0% | |
| CAGACAAGTCAGCTGGGACA+AGG | - | chr2_3:8326516-8326535 | None:intergenic | 55.0% | |
| !! | GTCCCAGCTGACTTGTCTGT+TGG | + | chr2_3:8326517-8326536 | Msa0276100:CDS | 55.0% |
| TGATAACAGCGAAGCGCGGT+TGG | + | chr2_3:8327028-8327047 | Msa0276100:three_prime_UTR | 55.0% | |
| TCTTACGCTAGTCATGGGGG+TGG | + | chr2_3:8327531-8327550 | Msa0276100:intron | 55.0% | |
| CTTACGCTAGTCATGGGGGT+GGG | + | chr2_3:8327532-8327551 | Msa0276100:intron | 55.0% | |
| TTACGCTAGTCATGGGGGTG+GGG | + | chr2_3:8327533-8327552 | Msa0276100:intron | 55.0% | |
| TGATAACAGCGAAGCGCGGT+TGG | + | chr2_3:8327028-8327047 | Msa0276100:three_prime_UTR | 55.0% | |
| TACGCTAGTCATGGGGGTGG+GGG | + | chr2_3:8327534-8327553 | Msa0276100:intron | 60.0% | |
| CTAGTCATGGGGGTGGGGGT+GGG | + | chr2_3:8327538-8327557 | Msa0276100:intron | 65.0% | |
| TAGTCATGGGGGTGGGGGTG+GGG | + | chr2_3:8327539-8327558 | Msa0276100:intron | 65.0% | |
| GCTAGTCATGGGGGTGGGGG+TGG | + | chr2_3:8327537-8327556 | Msa0276100:intron | 70.0% | |
| AGTCATGGGGGTGGGGGTGG+GGG | + | chr2_3:8327540-8327559 | Msa0276100:intron | 70.0% | |
| GTCATGGGGGTGGGGGTGGG+GGG | + | chr2_3:8327541-8327560 | Msa0276100:intron | 75.0% | |
| TCATGGGGGTGGGGGTGGGG+GGG | + | chr2_3:8327542-8327561 | Msa0276100:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 8324578 | 8327941 | 8324578 | ID=Msa0276100;Name=Msa0276100 |
| chr2_3 | mRNA | 8324578 | 8327941 | 8324578 | ID=Msa0276100-mRNA-1;Parent=Msa0276100;Name=Msa0276100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=152|1|1|1|0.66|0.57|7|486|119 |
| chr2_3 | exon | 8324578 | 8324698 | 8324578 | ID=Msa0276100-mRNA-1:exon:3758;Parent=Msa0276100-mRNA-1 |
| chr2_3 | exon | 8324791 | 8324858 | 8324791 | ID=Msa0276100-mRNA-1:exon:3759;Parent=Msa0276100-mRNA-1 |
| chr2_3 | exon | 8325440 | 8325495 | 8325440 | ID=Msa0276100-mRNA-1:exon:3760;Parent=Msa0276100-mRNA-1 |
| chr2_3 | exon | 8325583 | 8325635 | 8325583 | ID=Msa0276100-mRNA-1:exon:3761;Parent=Msa0276100-mRNA-1 |
| chr2_3 | exon | 8326510 | 8326628 | 8326510 | ID=Msa0276100-mRNA-1:exon:3762;Parent=Msa0276100-mRNA-1 |
| chr2_3 | exon | 8326706 | 8327233 | 8326706 | ID=Msa0276100-mRNA-1:exon:3763;Parent=Msa0276100-mRNA-1 |
| chr2_3 | exon | 8327889 | 8327941 | 8327889 | ID=Msa0276100-mRNA-1:exon:3764;Parent=Msa0276100-mRNA-1 |
| chr2_3 | five_prime_UTR | 8324578 | 8324698 | 8324578 | ID=Msa0276100-mRNA-1:five_prime_utr;Parent=Msa0276100-mRNA-1 |
| chr2_3 | five_prime_UTR | 8324791 | 8324821 | 8324791 | ID=Msa0276100-mRNA-1:five_prime_utr;Parent=Msa0276100-mRNA-1 |
| chr2_3 | CDS | 8324822 | 8324858 | 8324822 | ID=Msa0276100-mRNA-1:cds;Parent=Msa0276100-mRNA-1 |
| chr2_3 | CDS | 8325440 | 8325495 | 8325440 | ID=Msa0276100-mRNA-1:cds;Parent=Msa0276100-mRNA-1 |
| chr2_3 | CDS | 8325583 | 8325635 | 8325583 | ID=Msa0276100-mRNA-1:cds;Parent=Msa0276100-mRNA-1 |
| chr2_3 | CDS | 8326510 | 8326628 | 8326510 | ID=Msa0276100-mRNA-1:cds;Parent=Msa0276100-mRNA-1 |
| chr2_3 | CDS | 8326706 | 8326800 | 8326706 | ID=Msa0276100-mRNA-1:cds;Parent=Msa0276100-mRNA-1 |
| chr2_3 | three_prime_UTR | 8326801 | 8327233 | 8326801 | ID=Msa0276100-mRNA-1:three_prime_utr;Parent=Msa0276100-mRNA-1 |
| chr2_3 | three_prime_UTR | 8327889 | 8327941 | 8327889 | ID=Msa0276100-mRNA-1:three_prime_utr;Parent=Msa0276100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
