Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724780 | XP_003613593.2 | 95.442 | 373 | 16 | 1 | 1 | 373 | 1 | 372 | 0.0 | 730 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724780 | G7K9S9 | 95.442 | 373 | 16 | 1 | 1 | 373 | 1 | 372 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081660 | Msa0724780 | 0.801727 | 7.854147e-49 | -8.615850e-47 |
| Msa0657120 | Msa0724780 | 0.806610 | 7.565310e-50 | -8.615850e-47 |
| Msa0724780 | Msa0844830 | 0.913157 | 8.521161e-84 | -8.615850e-47 |
| Msa0724780 | Msa1006710 | 0.802267 | 6.083476e-49 | -8.615850e-47 |
| Msa0724780 | Msa1013070 | 0.806007 | 1.013563e-49 | -8.615850e-47 |
| Msa0127870 | Msa0724780 | 0.816570 | 5.165710e-52 | -8.615850e-47 |
| Msa0174010 | Msa0724780 | 0.812877 | 3.398538e-51 | -8.615850e-47 |
| Msa0203110 | Msa0724780 | 0.844461 | 7.453786e-59 | -8.615850e-47 |
| Msa0390550 | Msa0724780 | 0.814516 | 1.480248e-51 | -8.615850e-47 |
| Msa0246250 | Msa0724780 | 0.840242 | 9.785674e-58 | -8.615850e-47 |
| Msa0246260 | Msa0724780 | 0.812683 | 3.746619e-51 | -8.615850e-47 |
| Msa0547440 | Msa0724780 | 0.846948 | 1.575486e-59 | -8.615850e-47 |
| Msa0564850 | Msa0724780 | 0.813688 | 2.254800e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724780 | MtrunA17_Chr5g0416021 | 94.638 | 373 | 19 | 1 | 1 | 373 | 1 | 372 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724780 | AT1G07040.1 | 65.659 | 364 | 110 | 3 | 21 | 370 | 6 | 368 | 1.40e-172 | 486 |
| Msa0724780 | AT1G27020.1 | 54.515 | 299 | 132 | 3 | 67 | 363 | 8 | 304 | 4.22e-116 | 340 |
| Msa0724780 | AT1G27030.1 | 51.839 | 299 | 140 | 3 | 67 | 363 | 8 | 304 | 4.44e-114 | 335 |
Find 87 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTGCTGATTCACTTTC+TGG | 0.060373 | 5_1:-23862959 | Msa0724780:CDS |
| TGGTACAATATTCCACAATT+TGG | 0.191224 | 5_1:+23865040 | None:intergenic |
| CAGTTATACCATCAGAAAAT+TGG | 0.235125 | 5_1:+23861251 | None:intergenic |
| CATCTTGCATTCAGGACATT+TGG | 0.268203 | 5_1:-23863196 | Msa0724780:CDS |
| TCCTACAGCAAAGGCAATAT+TGG | 0.277872 | 5_1:-23863260 | Msa0724780:CDS |
| CGAGAGGAGCTGAGATTTCC+AGG | 0.292099 | 5_1:-23863010 | Msa0724780:CDS |
| ACCAAACATAATTTGTCTTT+AGG | 0.299263 | 5_1:-23865008 | Msa0724780:CDS |
| TCATGCAGTATACACATTAT+TGG | 0.310652 | 5_1:+23860573 | None:intergenic |
| ACAAGACACAGACATGTTTC+TGG | 0.311157 | 5_1:+23864971 | None:intergenic |
| TGATTATAGGTGAATGGTTA+TGG | 0.311517 | 5_1:-23863079 | Msa0724780:intron |
| AGTTAGCAGAGTAGGCTCTT+AGG | 0.314949 | 5_1:-23860708 | Msa0724780:exon |
| ATCTTGCATTCAGGACATTT+GGG | 0.316643 | 5_1:-23863195 | Msa0724780:CDS |
| GCTATGATCATCTTGCATTC+AGG | 0.323942 | 5_1:-23863204 | Msa0724780:CDS |
| CCAAGCTTCAAGAATACAAT+TGG | 0.326157 | 5_1:+23860609 | None:intergenic |
| CTGCTACAGTTGAACTTTGC+TGG | 0.329869 | 5_1:+23861287 | None:intergenic |
| TGTACGTACTCGTCAGAAAA+TGG | 0.331480 | 5_1:-23864951 | Msa0724780:CDS |
| GGTACAATATTCCACAATTT+GGG | 0.336047 | 5_1:+23865041 | None:intergenic |
| CTTTGCTGGAGAAGGCCATC+AGG | 0.378237 | 5_1:+23861301 | None:intergenic |
| ACCTAAAGACAAATTATGTT+TGG | 0.378724 | 5_1:+23865007 | None:intergenic |
| CTCTCATGGATCAACAATTC+AGG | 0.386057 | 5_1:-23864922 | Msa0724780:intron |
| AACAAGTTTCTTGAGGAGAA+TGG | 0.386155 | 5_1:-23861728 | Msa0724780:CDS |
| ATATTCAGAGTTTCAACAAT+TGG | 0.398259 | 5_1:-23861949 | Msa0724780:CDS |
| TACAGCTCTTGCGAGTTCAT+TGG | 0.400082 | 5_1:-23861997 | Msa0724780:CDS |
| TGTATACTGCATGATTCAAT+TGG | 0.400535 | 5_1:-23860564 | Msa0724780:three_prime_UTR |
| TACTCTGCTAACTTGTTCCT+TGG | 0.408908 | 5_1:+23860718 | None:intergenic |
| TCACTTTCTGGCAGTGGCAG+TGG | 0.415896 | 5_1:-23862947 | Msa0724780:CDS |
| GCTGCGTGGACGCTAGTAAA+TGG | 0.417737 | 5_1:-23861821 | Msa0724780:CDS |
| CCAATTGTATTCTTGAAGCT+TGG | 0.418219 | 5_1:-23860609 | Msa0724780:three_prime_UTR |
| TGCACTTGATTATAGGTGAA+TGG | 0.419496 | 5_1:-23863085 | Msa0724780:intron |
| ACAGCTCTTGCGAGTTCATT+GGG | 0.421750 | 5_1:-23861996 | Msa0724780:CDS |
| CCATTTCCAGTGAGCCCTGA+TGG | 0.447937 | 5_1:-23861316 | Msa0724780:intron |
| CCTCGAAACCATCCCTCCTA+TGG | 0.454597 | 5_1:+23860774 | None:intergenic |
| CACCAACATACCTGAGTTTG+CGG | 0.454845 | 5_1:+23862866 | None:intergenic |
| GCTGATTCACTTTCTGGCAG+TGG | 0.461381 | 5_1:-23862953 | Msa0724780:CDS |
| AGGAAATACACAGAATCATC+TGG | 0.472242 | 5_1:-23862035 | Msa0724780:CDS |
| GGCAGTGGCAGTGGCATGAA+TGG | 0.474158 | 5_1:-23862938 | Msa0724780:CDS |
| TAAAGACAAATTATGTTTGG+TGG | 0.477809 | 5_1:+23865010 | None:intergenic |
| TTGTAGAAAACATGGTTAAG+TGG | 0.479420 | 5_1:+23865126 | None:intergenic |
| TAATGTTGTTTGATGTTTGA+AGG | 0.479644 | 5_1:+23865190 | None:intergenic |
| TCGGCTGAAAACTCATTTGA+AGG | 0.484819 | 5_1:-23861765 | Msa0724780:CDS |
| CTTGGTTGTTGTAGAAAACA+TGG | 0.495107 | 5_1:+23865118 | None:intergenic |
| CAGTTGAACTTTGCTGGAGA+AGG | 0.500485 | 5_1:+23861293 | None:intergenic |
| TGTTGAAACTCTGAATATGA+TGG | 0.503190 | 5_1:+23861954 | None:intergenic |
| TACACAGAATCATCTGGTAA+TGG | 0.505750 | 5_1:-23862029 | Msa0724780:CDS |
| ATGGAATTGACTCCTTGGCT+AGG | 0.510985 | 5_1:-23863060 | Msa0724780:CDS |
| CCATAGGAGGGATGGTTTCG+AGG | 0.513843 | 5_1:-23860774 | Msa0724780:CDS |
| AAGGAACAAGTTAGCAGAGT+AGG | 0.514727 | 5_1:-23860716 | Msa0724780:CDS |
| AGACATGTTTCTGGCTGAAG+TGG | 0.521479 | 5_1:+23864980 | None:intergenic |
| TGCAAGATGATCATAGCATA+AGG | 0.522407 | 5_1:+23863210 | None:intergenic |
| TCCAATATTGCCTTTGCTGT+AGG | 0.524792 | 5_1:+23863259 | None:intergenic |
| AATGTTGTTTGATGTTTGAA+GGG | 0.525073 | 5_1:+23865191 | None:intergenic |
| TCAGATGAGTCCGCAAACTC+AGG | 0.526131 | 5_1:-23862876 | Msa0724780:intron |
| AAACTTGAACAAGTTTCTTG+AGG | 0.535175 | 5_1:-23861735 | Msa0724780:CDS |
| AAAGAGTTCCATAGGAGGGA+TGG | 0.537994 | 5_1:-23860782 | Msa0724780:CDS |
| GGATTCAGATTGAATTCTGA+AGG | 0.537995 | 5_1:-23861707 | Msa0724780:CDS |
| CAAGCTTCAAGAATACAATT+GGG | 0.538882 | 5_1:+23860610 | None:intergenic |
| ACGCTCTGCAAATTCTATGT+AGG | 0.543289 | 5_1:+23861213 | None:intergenic |
| CAGAGTTTCAACAATTGGCA+AGG | 0.544684 | 5_1:-23861944 | Msa0724780:intron |
| GTATACTGCATGATTCAATT+GGG | 0.555924 | 5_1:-23860563 | Msa0724780:three_prime_UTR |
| TGGTTATGGAATTGACTCCT+TGG | 0.557105 | 5_1:-23863065 | Msa0724780:CDS |
| GAAAATGGATCACACTCTCA+TGG | 0.560780 | 5_1:-23864936 | Msa0724780:CDS |
| GTTCATTGGGACATTTAACA+TGG | 0.566621 | 5_1:-23861983 | Msa0724780:CDS |
| TTATGTTTGGTGGAAGATGA+TGG | 0.570831 | 5_1:+23865020 | None:intergenic |
| CTGCCAGAAAGTGAATCAGC+AGG | 0.576143 | 5_1:+23862956 | None:intergenic |
| TTTGCTGGAGAAGGCCATCA+GGG | 0.588970 | 5_1:+23861302 | None:intergenic |
| TGTTCTCGACAGAGTGAACA+AGG | 0.590655 | 5_1:+23863236 | None:intergenic |
| GATTAAAGAGTTCCATAGGA+GGG | 0.598200 | 5_1:-23860786 | Msa0724780:CDS |
| GCAAATTCTATGTAGGAGCA+TGG | 0.600668 | 5_1:+23861220 | None:intergenic |
| TCTGAAGGAGGAGTATTGAA+AGG | 0.600695 | 5_1:-23861692 | Msa0724780:intron |
| AACAGATTAAAGAGTTCCAT+AGG | 0.601674 | 5_1:-23860790 | Msa0724780:intron |
| ATGTCACTATTTCCACTCAT+CGG | 0.604585 | 5_1:-23861784 | Msa0724780:CDS |
| GTTGCGTATAGCCATAGTCC+AGG | 0.608729 | 5_1:+23863032 | None:intergenic |
| GTAGTATATGTACATGATCA+CGG | 0.614950 | 5_1:+23860665 | None:intergenic |
| GATCTTTGAGAGCACATCCA+AGG | 0.618717 | 5_1:-23860735 | Msa0724780:CDS |
| AAAATCAAATACACACACAT+CGG | 0.621101 | 5_1:-23860503 | Msa0724780:three_prime_UTR |
| GAACAGAAATCCTACAGCAA+AGG | 0.626638 | 5_1:-23863269 | Msa0724780:CDS |
| TCTTGCATTCAGGACATTTG+GGG | 0.627700 | 5_1:-23863194 | Msa0724780:intron |
| TTCAGATTGAATTCTGAAGG+AGG | 0.628599 | 5_1:-23861704 | Msa0724780:CDS |
| TTCATTGGGACATTTAACAT+GGG | 0.633802 | 5_1:-23861982 | Msa0724780:CDS |
| AGATTAAAGAGTTCCATAGG+AGG | 0.638002 | 5_1:-23860787 | Msa0724780:CDS |
| GAGAGGAGCTGAGATTTCCA+GGG | 0.649357 | 5_1:-23863009 | Msa0724780:CDS |
| ATGCTGCTTACTTCTGTGTG+AGG | 0.665830 | 5_1:+23861163 | None:intergenic |
| CTATGGCTATACGCAACGAG+AGG | 0.700616 | 5_1:-23863026 | Msa0724780:CDS |
| CCAGAAAGTGAATCAGCAGG+AGG | 0.702797 | 5_1:+23862959 | None:intergenic |
| AGGTGATGAAGTATAAGACT+TGG | 0.705465 | 5_1:+23865100 | None:intergenic |
| GATGAGTGGAAATAGTGACA+TGG | 0.720372 | 5_1:+23861786 | None:intergenic |
| GAGAGAGTGAGTATGCTGCG+TGG | 0.746670 | 5_1:-23861835 | Msa0724780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAACTTTAAATTTAAAA+GGG | + | chr5_1:23864184-23864203 | None:intergenic | 10.0% |
| !!! | CAATATAATGTTTTGTTAAA+AGG | - | chr5_1:23863218-23863237 | Msa0724780:CDS | 15.0% |
| !! | TTATTCCAAAATTTGAAAAT+TGG | + | chr5_1:23863299-23863318 | None:intergenic | 15.0% |
| !! | CTTAGAACTTTAAATTTAAA+AGG | + | chr5_1:23864185-23864204 | None:intergenic | 15.0% |
| !! | TTAGTTAAAATAAGAAGAAT+TGG | + | chr5_1:23864911-23864930 | None:intergenic | 15.0% |
| !! | GAAATTCCTAAAATTATTCA+TGG | - | chr5_1:23860910-23860929 | Msa0724780:intron | 20.0% |
| !!! | ATACATGCAAACAATTTTAT+GGG | + | chr5_1:23861694-23861713 | None:intergenic | 20.0% |
| !!! | TATGGTTTTGAAAAAGAATT+AGG | - | chr5_1:23861711-23861730 | Msa0724780:CDS | 20.0% |
| !!! | TTCTGGATTCTTTTTTTTAA+GGG | - | chr5_1:23862330-23862349 | Msa0724780:intron | 20.0% |
| !!! | AATTTTTATATCAGAGCTAT+TGG | - | chr5_1:23862821-23862840 | Msa0724780:intron | 20.0% |
| !! | ATAACAATCATTGTAATTCT+TGG | + | chr5_1:23862922-23862941 | None:intergenic | 20.0% |
| !! | AAGAATTACAATGATTGTTA+TGG | - | chr5_1:23862921-23862940 | Msa0724780:CDS | 20.0% |
| !!! | GCTTATTTTTATGTTGAAAT+TGG | - | chr5_1:23863020-23863039 | Msa0724780:CDS | 20.0% |
| !!! | TTTTTATGTTGAAATTGGAA+TGG | - | chr5_1:23863025-23863044 | Msa0724780:CDS | 20.0% |
| !!! | AAACACCAATTTTCAAATTT+TGG | - | chr5_1:23863291-23863310 | Msa0724780:CDS | 20.0% |
| !!! | TTTTCATACAGGAAATAATT+AGG | - | chr5_1:23863669-23863688 | Msa0724780:intron | 20.0% |
| !!! | TTTCTTCAAATAGCATTTTT+AGG | + | chr5_1:23863822-23863841 | None:intergenic | 20.0% |
| !!! | ATTGACTTAAATTTACACAT+TGG | + | chr5_1:23864127-23864146 | None:intergenic | 20.0% |
| !!! | GTATTTTGAATAGTTAAAAC+TGG | - | chr5_1:23864204-23864223 | Msa0724780:intron | 20.0% |
| !!! | TAGCATTTAGAATTAAGAAA+AGG | - | chr5_1:23864270-23864289 | Msa0724780:intron | 20.0% |
| !!! | AATTAAGAAAAGGATTTTGT+CGG | - | chr5_1:23864280-23864299 | Msa0724780:intron | 20.0% |
| !! | AATGTTGTTTGATGTTTGAA+GGG | + | chr5_1:23860536-23860555 | None:intergenic | 25.0% |
| !! | TAATGTTGTTTGATGTTTGA+AGG | + | chr5_1:23860537-23860556 | None:intergenic | 25.0% |
| !! | TGCAAAATGAAGAAATTTTG+CGG | + | chr5_1:23860661-23860680 | None:intergenic | 25.0% |
| ! | TAAAGACAAATTATGTTTGG+TGG | + | chr5_1:23860717-23860736 | None:intergenic | 25.0% |
| !! | ACCAAACATAATTTGTCTTT+AGG | - | chr5_1:23860716-23860735 | Msa0724780:CDS | 25.0% |
| ! | ACCTAAAGACAAATTATGTT+TGG | + | chr5_1:23860720-23860739 | None:intergenic | 25.0% |
| ! | TTCCTAAAATTATTCATGGT+TGG | - | chr5_1:23860914-23860933 | Msa0724780:intron | 25.0% |
| !! | ATGCAAACAATTTCTTTTGT+AGG | + | chr5_1:23860984-23861003 | None:intergenic | 25.0% |
| ! | AAAGAAATTGTTTGCATGTA+CGG | - | chr5_1:23860987-23861006 | Msa0724780:intron | 25.0% |
| ! | TTGCTTGTGTTATCAATTAA+TGG | - | chr5_1:23861047-23861066 | Msa0724780:intron | 25.0% |
| ! | TTTGTGAATGTTTGAATTCA+CGG | - | chr5_1:23861099-23861118 | Msa0724780:intron | 25.0% |
| ! | TTCAGTATAATTACAAGTGT+CGG | + | chr5_1:23861392-23861411 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | chr5_1:23861423-23861442 | Msa0724780:intron | 25.0% |
| !! | TACATGCAAACAATTTTATG+GGG | + | chr5_1:23861693-23861712 | None:intergenic | 25.0% |
| !! | CATACATGCAAACAATTTTA+TGG | + | chr5_1:23861695-23861714 | None:intergenic | 25.0% |
| ! | CATAAAATTGTTTGCATGTA+TGG | - | chr5_1:23861693-23861712 | Msa0724780:CDS | 25.0% |
| ! | TATCATGGATAACCATTAAT+CGG | + | chr5_1:23861759-23861778 | None:intergenic | 25.0% |
| ! | GAAATCAAATTGAATGTTTG+TGG | + | chr5_1:23861877-23861896 | None:intergenic | 25.0% |
| !!! | TTTAACTTGAAGCTAGATTT+TGG | + | chr5_1:23862019-23862038 | None:intergenic | 25.0% |
| ! | ATAATGAATCTGAGAATTTG+TGG | - | chr5_1:23862302-23862321 | Msa0724780:intron | 25.0% |
| ! | TAAAAAAAAGAATCCAGAAC+AGG | + | chr5_1:23862329-23862348 | None:intergenic | 25.0% |
| !!! | GTTCTGGATTCTTTTTTTTA+AGG | - | chr5_1:23862329-23862348 | Msa0724780:intron | 25.0% |
| !!! | TCTGGATTCTTTTTTTTAAG+GGG | - | chr5_1:23862331-23862350 | Msa0724780:intron | 25.0% |
| !!! | ATTCTTTTTTTTAAGGGGTT+TGG | - | chr5_1:23862336-23862355 | Msa0724780:intron | 25.0% |
| ! | AATGTGATTTCTATGTATGT+AGG | - | chr5_1:23862380-23862399 | Msa0724780:intron | 25.0% |
| ! | ATGTGATTTCTATGTATGTA+GGG | - | chr5_1:23862381-23862400 | Msa0724780:intron | 25.0% |
| ! | GATATAAAAATTCTTGGCAA+GGG | + | chr5_1:23862813-23862832 | None:intergenic | 25.0% |
| ! | TGATATAAAAATTCTTGGCA+AGG | + | chr5_1:23862814-23862833 | None:intergenic | 25.0% |
| !! | AGCTCTGATATAAAAATTCT+TGG | + | chr5_1:23862819-23862838 | None:intergenic | 25.0% |
| ! | AATTACAATGATTGTTATGG+AGG | - | chr5_1:23862924-23862943 | Msa0724780:CDS | 25.0% |
| ! | CAAAACATTATATTGACGAT+TGG | + | chr5_1:23863213-23863232 | None:intergenic | 25.0% |
| !! | TAGTATGTCTACAATTTTCT+TGG | - | chr5_1:23863333-23863352 | Msa0724780:intron | 25.0% |
| ! | ATTTGAGAAACAAAGAGATA+TGG | - | chr5_1:23863451-23863470 | Msa0724780:intron | 25.0% |
| ! | TTTGAGAAACAAAGAGATAT+GGG | - | chr5_1:23863452-23863471 | Msa0724780:intron | 25.0% |
| ! | ATATTCAGAGTTTCAACAAT+TGG | - | chr5_1:23863775-23863794 | Msa0724780:intron | 25.0% |
| ! | TCTGCAAGTATAAAATATTC+TGG | - | chr5_1:23864075-23864094 | Msa0724780:intron | 25.0% |
| ! | AAAGCTAAAATATGTTACTC+TGG | + | chr5_1:23864594-23864613 | None:intergenic | 25.0% |
| ! | TATCCATAAAAATCAGAGAT+GGG | + | chr5_1:23864642-23864661 | None:intergenic | 25.0% |
| ! | TTATCCATAAAAATCAGAGA+TGG | + | chr5_1:23864643-23864662 | None:intergenic | 25.0% |
| ! | ATCAATCCAAACATTATAAG+CGG | + | chr5_1:23864740-23864759 | None:intergenic | 25.0% |
| ! | AAAATCAAATACACACACAT+CGG | - | chr5_1:23865221-23865240 | Msa0724780:five_prime_UTR | 25.0% |
| TTGTAGAAAACATGGTTAAG+TGG | + | chr5_1:23860601-23860620 | None:intergenic | 30.0% | |
| GGTACAATATTCCACAATTT+GGG | + | chr5_1:23860686-23860705 | None:intergenic | 30.0% | |
| TGGTACAATATTCCACAATT+TGG | + | chr5_1:23860687-23860706 | None:intergenic | 30.0% | |
| ! | CTCCAACCATGAATAATTTT+AGG | + | chr5_1:23860919-23860938 | None:intergenic | 30.0% |
| AAAATTATTCATGGTTGGAG+TGG | - | chr5_1:23860919-23860938 | Msa0724780:intron | 30.0% | |
| GTGGATTTGATTGAATATAG+TGG | - | chr5_1:23861121-23861140 | Msa0724780:intron | 30.0% | |
| !! | GATTGAATATAGTGGATTCA+AGG | - | chr5_1:23861129-23861148 | Msa0724780:intron | 30.0% |
| GCAAATCATACTAAGCTAAT+AGG | + | chr5_1:23861207-23861226 | None:intergenic | 30.0% | |
| TTAGTGTATCTTTGGCATAA+TGG | + | chr5_1:23861284-23861303 | None:intergenic | 30.0% | |
| CACAAACATGAAAGATGTTA+GGG | + | chr5_1:23861631-23861650 | None:intergenic | 30.0% | |
| ! | ACATGCAAACAATTTTATGG+GGG | + | chr5_1:23861692-23861711 | None:intergenic | 30.0% |
| ! | TTGATTGTGTTACCGATTAA+TGG | - | chr5_1:23861744-23861763 | Msa0724780:CDS | 30.0% |
| !! | ATGGATATCCATTTTGAAGA+AGG | + | chr5_1:23861782-23861801 | None:intergenic | 30.0% |
| !!! | CTTAATCACTTTTTGCATCA+TGG | + | chr5_1:23861801-23861820 | None:intergenic | 30.0% |
| AAATTGAATGTTTGTGGTCA+TGG | + | chr5_1:23861871-23861890 | None:intergenic | 30.0% | |
| TTCCACTTGAGAAAATTCAA+AGG | - | chr5_1:23862061-23862080 | Msa0724780:intron | 30.0% | |
| GGAGGAATAATTGATTATAG+AGG | + | chr5_1:23862106-23862125 | None:intergenic | 30.0% | |
| TGTGATTTCTATGTATGTAG+GGG | - | chr5_1:23862382-23862401 | Msa0724780:intron | 30.0% | |
| TGTCTTATGCACTTGATTAT+AGG | - | chr5_1:23862632-23862651 | Msa0724780:intron | 30.0% | |
| TGATTATAGGTGAATGGTTA+TGG | - | chr5_1:23862645-23862664 | Msa0724780:intron | 30.0% | |
| ATTTCCAGGGAAAAAATTGA+GGG | - | chr5_1:23862728-23862747 | Msa0724780:intron | 30.0% | |
| GAAACTAACTGCAAATAAGA+GGG | + | chr5_1:23862962-23862981 | None:intergenic | 30.0% | |
| TGAAACTAACTGCAAATAAG+AGG | + | chr5_1:23862963-23862982 | None:intergenic | 30.0% | |
| AAGTGAATCTACGATTCAAA+TGG | + | chr5_1:23863182-23863201 | None:intergenic | 30.0% | |
| ! | TGTCTACAATTTTCTTGGTA+CGG | - | chr5_1:23863338-23863357 | Msa0724780:intron | 30.0% |
| ATACAACAAATCATGCGATA+CGG | + | chr5_1:23863401-23863420 | None:intergenic | 30.0% | |
| TTGAGAAACAAAGAGATATG+GGG | - | chr5_1:23863453-23863472 | Msa0724780:intron | 30.0% | |
| GACTTAGATATGACAAGTAA+CGG | - | chr5_1:23863495-23863514 | Msa0724780:intron | 30.0% | |
| GTAACGGCATATTAAGATTT+AGG | - | chr5_1:23863511-23863530 | Msa0724780:intron | 30.0% | |
| GCATATTAAGATTTAGGTGT+TGG | - | chr5_1:23863517-23863536 | Msa0724780:intron | 30.0% | |
| TGTTTGTACTAAAAGAAGCT+GGG | - | chr5_1:23863644-23863663 | Msa0724780:intron | 30.0% | |
| TTCATTGGGACATTTAACAT+GGG | - | chr5_1:23863742-23863761 | Msa0724780:intron | 30.0% | |
| TGTTGAAACTCTGAATATGA+TGG | + | chr5_1:23863773-23863792 | None:intergenic | 30.0% | |
| !! | CTTCAAATAGCATTTTTAGG+TGG | + | chr5_1:23863819-23863838 | None:intergenic | 30.0% |
| !! | TTTAAGCACTGTTTAACTTG+TGG | - | chr5_1:23863853-23863872 | Msa0724780:intron | 30.0% |
| AAACTTGAACAAGTTTCTTG+AGG | - | chr5_1:23863989-23864008 | Msa0724780:intron | 30.0% | |
| ! | TAGATTTTCTCATCATTGAC+AGG | - | chr5_1:23864244-23864263 | Msa0724780:intron | 30.0% |
| ! | TGTTTTTCACATTACTGCTA+AGG | - | chr5_1:23864358-23864377 | Msa0724780:intron | 30.0% |
| ! | GTTTCTTTCCAATTTTCTGA+TGG | - | chr5_1:23864465-23864484 | Msa0724780:intron | 30.0% |
| CAGTTATACCATCAGAAAAT+TGG | + | chr5_1:23864476-23864495 | None:intergenic | 30.0% | |
| ! | TGAGGTAAATTTTCATACTG+CGG | + | chr5_1:23864546-23864565 | None:intergenic | 30.0% |
| ! | ATTCCCATCTCTGATTTTTA+TGG | - | chr5_1:23864636-23864655 | Msa0724780:intron | 30.0% |
| TTCTTATAGTAGTCTACACT+TGG | + | chr5_1:23864707-23864726 | None:intergenic | 30.0% | |
| AATGATCCGCTTATAATGTT+TGG | - | chr5_1:23864731-23864750 | Msa0724780:intron | 30.0% | |
| TAGTGAGATTGTCTAAATCA+CGG | - | chr5_1:23864759-23864778 | Msa0724780:intron | 30.0% | |
| ! | TGTAGCTTTTGTCAAAATCA+CGG | + | chr5_1:23864794-23864813 | None:intergenic | 30.0% |
| AACAGATTAAAGAGTTCCAT+AGG | - | chr5_1:23864934-23864953 | Msa0724780:CDS | 30.0% | |
| GTAGTATATGTACATGATCA+CGG | + | chr5_1:23865062-23865081 | None:intergenic | 30.0% | |
| !! | ATATACTACTTTTCCCTTTG+AGG | - | chr5_1:23865073-23865092 | Msa0724780:CDS | 30.0% |
| ! | AATGTTTTCTCTTCCTCAAA+GGG | + | chr5_1:23865089-23865108 | None:intergenic | 30.0% |
| ! | AAATGTTTTCTCTTCCTCAA+AGG | + | chr5_1:23865090-23865109 | None:intergenic | 30.0% |
| CAAGCTTCAAGAATACAATT+GGG | + | chr5_1:23865117-23865136 | None:intergenic | 30.0% | |
| TCATGCAGTATACACATTAT+TGG | + | chr5_1:23865154-23865173 | None:intergenic | 30.0% | |
| TGTATACTGCATGATTCAAT+TGG | - | chr5_1:23865160-23865179 | Msa0724780:five_prime_UTR | 30.0% | |
| GTATACTGCATGATTCAATT+GGG | - | chr5_1:23865161-23865180 | Msa0724780:five_prime_UTR | 30.0% | |
| !! | TGTGTGTGTATTTGATTTTG+AGG | + | chr5_1:23865220-23865239 | None:intergenic | 30.0% |
| CTTGGTTGTTGTAGAAAACA+TGG | + | chr5_1:23860609-23860628 | None:intergenic | 35.0% | |
| AGGTGATGAAGTATAAGACT+TGG | + | chr5_1:23860627-23860646 | None:intergenic | 35.0% | |
| ! | ATGAAGAAATTTTGCGGAGA+GGG | + | chr5_1:23860655-23860674 | None:intergenic | 35.0% |
| ! | AATGAAGAAATTTTGCGGAG+AGG | + | chr5_1:23860656-23860675 | None:intergenic | 35.0% |
| ! | CATTTTGCAAACCCAAATTG+TGG | - | chr5_1:23860672-23860691 | Msa0724780:three_prime_UTR | 35.0% |
| ! | TTATGTTTGGTGGAAGATGA+TGG | + | chr5_1:23860707-23860726 | None:intergenic | 35.0% |
| CTTGATCATTGTTAGCAACT+TGG | + | chr5_1:23861077-23861096 | None:intergenic | 35.0% | |
| TTCCAAGTGCATATTTGGTA+CGG | - | chr5_1:23861155-23861174 | Msa0724780:intron | 35.0% | |
| TGTATCTTTGGCATAATGGT+GGG | + | chr5_1:23861280-23861299 | None:intergenic | 35.0% | |
| TCACACACTTAGTGTATCTT+TGG | + | chr5_1:23861292-23861311 | None:intergenic | 35.0% | |
| AGATACACTAAGTGTGTGAT+TGG | - | chr5_1:23861293-23861312 | Msa0724780:CDS | 35.0% | |
| !! | ATTTTGAGTGAGCCAATGTT+TGG | - | chr5_1:23861514-23861533 | Msa0724780:intron | 35.0% |
| TTATCATTTGAATGTGCAGC+AGG | + | chr5_1:23861571-23861590 | None:intergenic | 35.0% | |
| CCACAAACATGAAAGATGTT+AGG | + | chr5_1:23861632-23861651 | None:intergenic | 35.0% | |
| CCTAACATCTTTCATGTTTG+TGG | - | chr5_1:23861629-23861648 | Msa0724780:intron | 35.0% | |
| AACATCTTTCATGTTTGTGG+CGG | - | chr5_1:23861632-23861651 | Msa0724780:intron | 35.0% | |
| ! | CATGCAAACAATTTTATGGG+GGG | + | chr5_1:23861691-23861710 | None:intergenic | 35.0% |
| !!! | CCATTTTGAAGAAGGTATCA+TGG | + | chr5_1:23861774-23861793 | None:intergenic | 35.0% |
| CCATGATACCTTCTTCAAAA+TGG | - | chr5_1:23861771-23861790 | Msa0724780:CDS | 35.0% | |
| !!! | CATGGTGGGTTTTTCAAATT+CGG | + | chr5_1:23861853-23861872 | None:intergenic | 35.0% |
| GAACAATAAATTCCACGCAA+AGG | - | chr5_1:23861972-23861991 | Msa0724780:CDS | 35.0% | |
| ! | TTCAAGTTAAAACAGTTCCG+AGG | - | chr5_1:23862028-23862047 | Msa0724780:CDS | 35.0% |
| !! | AGTGGAATTGATTTTGTCCT+CGG | + | chr5_1:23862048-23862067 | None:intergenic | 35.0% |
| ! | AGCCTTTGAATTTTCTCAAG+TGG | + | chr5_1:23862066-23862085 | None:intergenic | 35.0% |
| !!! | GAAATTTTTGGGTCCACTTT+CGG | + | chr5_1:23862136-23862155 | None:intergenic | 35.0% |
| !! | ATAGCGTGGTGGAAATTTTT+GGG | + | chr5_1:23862147-23862166 | None:intergenic | 35.0% |
| !! | AATAGCGTGGTGGAAATTTT+TGG | + | chr5_1:23862148-23862167 | None:intergenic | 35.0% |
| AAAATTTCCACCACGCTATT+TGG | - | chr5_1:23862148-23862167 | Msa0724780:intron | 35.0% | |
| AAATTTCCACCACGCTATTT+GGG | - | chr5_1:23862149-23862168 | Msa0724780:intron | 35.0% | |
| !!! | GGTGACGTCGAAATTTTTTA+TGG | - | chr5_1:23862173-23862192 | Msa0724780:intron | 35.0% |
| CAGATTCATTATCACTGTCA+AGG | + | chr5_1:23862294-23862313 | None:intergenic | 35.0% | |
| GTGATTTCTATGTATGTAGG+GGG | - | chr5_1:23862383-23862402 | Msa0724780:intron | 35.0% | |
| TGATTTCTATGTATGTAGGG+GGG | - | chr5_1:23862384-23862403 | Msa0724780:intron | 35.0% | |
| TGCAAGATGATCATAGCATA+AGG | + | chr5_1:23862517-23862536 | None:intergenic | 35.0% | |
| ATCTTGCATTCAGGACATTT+GGG | - | chr5_1:23862529-23862548 | Msa0724780:intron | 35.0% | |
| TGCACTTGATTATAGGTGAA+TGG | - | chr5_1:23862639-23862658 | Msa0724780:intron | 35.0% | |
| GATTTCCAGGGAAAAAATTG+AGG | - | chr5_1:23862727-23862746 | Msa0724780:intron | 35.0% | |
| TACAATGATTGTTATGGAGG+AGG | - | chr5_1:23862927-23862946 | Msa0724780:CDS | 35.0% | |
| TGAGATTCACTTTAGTGTTG+AGG | - | chr5_1:23863114-23863133 | Msa0724780:intron | 35.0% | |
| ACTGGAAATTGTTACTCTCT+TGG | + | chr5_1:23863264-23863283 | None:intergenic | 35.0% | |
| ! | CTTGCCAAACCATGATTTTA+AGG | - | chr5_1:23863363-23863382 | Msa0724780:intron | 35.0% |
| ACTGCCTTAAAATCATGGTT+TGG | + | chr5_1:23863370-23863389 | None:intergenic | 35.0% | |
| !!! | AAACCATGATTTTAAGGCAG+TGG | - | chr5_1:23863369-23863388 | Msa0724780:intron | 35.0% |
| AAACCACTGCCTTAAAATCA+TGG | + | chr5_1:23863375-23863394 | None:intergenic | 35.0% | |
| GAGATTAAAGGATGAACCAT+TGG | + | chr5_1:23863599-23863618 | None:intergenic | 35.0% | |
| TACAATGCAAGGGAGATTAA+AGG | + | chr5_1:23863611-23863630 | None:intergenic | 35.0% | |
| TTCTGAATGCTACAATGCAA+GGG | + | chr5_1:23863621-23863640 | None:intergenic | 35.0% | |
| TTTCTGAATGCTACAATGCA+AGG | + | chr5_1:23863622-23863641 | None:intergenic | 35.0% | |
| ! | CAGCTTCTTTTAGTACAAAC+AGG | + | chr5_1:23863645-23863664 | None:intergenic | 35.0% |
| CTGTTTGTACTAAAAGAAGC+TGG | - | chr5_1:23863643-23863662 | Msa0724780:intron | 35.0% | |
| AGGAAATACACAGAATCATC+TGG | - | chr5_1:23863689-23863708 | Msa0724780:intron | 35.0% | |
| TACACAGAATCATCTGGTAA+TGG | - | chr5_1:23863695-23863714 | Msa0724780:intron | 35.0% | |
| GTTCATTGGGACATTTAACA+TGG | - | chr5_1:23863741-23863760 | Msa0724780:intron | 35.0% | |
| ATGTCACTATTTCCACTCAT+CGG | - | chr5_1:23863940-23863959 | Msa0724780:intron | 35.0% | |
| AACAAGTTTCTTGAGGAGAA+TGG | - | chr5_1:23863996-23864015 | Msa0724780:intron | 35.0% | |
| GGATTCAGATTGAATTCTGA+AGG | - | chr5_1:23864017-23864036 | Msa0724780:intron | 35.0% | |
| ! | TTCAGATTGAATTCTGAAGG+AGG | - | chr5_1:23864020-23864039 | Msa0724780:intron | 35.0% |
| AATCAGAAAGAGACTAGTGA+TGG | + | chr5_1:23864150-23864169 | None:intergenic | 35.0% | |
| ! | CACTAGTCTCTTTCTGATTT+AGG | - | chr5_1:23864151-23864170 | Msa0724780:intron | 35.0% |
| GAAATCCTGCAGAAAATGAA+TGG | + | chr5_1:23864889-23864908 | None:intergenic | 35.0% | |
| AGATTAAAGAGTTCCATAGG+AGG | - | chr5_1:23864937-23864956 | Msa0724780:CDS | 35.0% | |
| GATTAAAGAGTTCCATAGGA+GGG | - | chr5_1:23864938-23864957 | Msa0724780:CDS | 35.0% | |
| CCAAGCTTCAAGAATACAAT+TGG | + | chr5_1:23865118-23865137 | None:intergenic | 35.0% | |
| CCAATTGTATTCTTGAAGCT+TGG | - | chr5_1:23865115-23865134 | Msa0724780:CDS | 35.0% | |
| ACAAGACACAGACATGTTTC+TGG | + | chr5_1:23860756-23860775 | None:intergenic | 40.0% | |
| TGTACGTACTCGTCAGAAAA+TGG | - | chr5_1:23860773-23860792 | Msa0724780:CDS | 40.0% | |
| GAAAATGGATCACACTCTCA+TGG | - | chr5_1:23860788-23860807 | Msa0724780:CDS | 40.0% | |
| CTCTCATGGATCAACAATTC+AGG | - | chr5_1:23860802-23860821 | Msa0724780:intron | 40.0% | |
| GTGAATGTTTGAATTCACGG+TGG | - | chr5_1:23861102-23861121 | Msa0724780:intron | 40.0% | |
| GGTGATTCCAAGTGCATATT+TGG | - | chr5_1:23861150-23861169 | Msa0724780:intron | 40.0% | |
| TGCATATTTGGTACGGAGTT+TGG | - | chr5_1:23861162-23861181 | Msa0724780:intron | 40.0% | |
| GCATATTTGGTACGGAGTTT+GGG | - | chr5_1:23861163-23861182 | Msa0724780:intron | 40.0% | |
| CATATTTGGTACGGAGTTTG+GGG | - | chr5_1:23861164-23861183 | Msa0724780:intron | 40.0% | |
| ATATTTGGTACGGAGTTTGG+GGG | - | chr5_1:23861165-23861184 | Msa0724780:intron | 40.0% | |
| GTGTATCTTTGGCATAATGG+TGG | + | chr5_1:23861281-23861300 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGAGCTATGAAGCA+CGG | - | chr5_1:23861313-23861332 | Msa0724780:intron | 40.0% |
| ATGAAGCACGTATACAGACA+TGG | + | chr5_1:23861471-23861490 | None:intergenic | 40.0% | |
| TGTCTGTATACGTGCTTCAT+AGG | - | chr5_1:23861471-23861490 | Msa0724780:intron | 40.0% | |
| TACACCACAGATCCAAACAT+TGG | + | chr5_1:23861529-23861548 | None:intergenic | 40.0% | |
| TGAATGTTTGTGGTCATGGT+GGG | + | chr5_1:23861867-23861886 | None:intergenic | 40.0% | |
| TTGAATGTTTGTGGTCATGG+TGG | + | chr5_1:23861868-23861887 | None:intergenic | 40.0% | |
| !! | CTCTAGAATTAACCTTTGCG+TGG | + | chr5_1:23861987-23862006 | None:intergenic | 40.0% |
| GAACAGAAATCCTACAGCAA+AGG | - | chr5_1:23862455-23862474 | Msa0724780:intron | 40.0% | |
| TCCTACAGCAAAGGCAATAT+TGG | - | chr5_1:23862464-23862483 | Msa0724780:intron | 40.0% | |
| ! | TCCAATATTGCCTTTGCTGT+AGG | + | chr5_1:23862468-23862487 | None:intergenic | 40.0% |
| GCTATGATCATCTTGCATTC+AGG | - | chr5_1:23862520-23862539 | Msa0724780:intron | 40.0% | |
| CATCTTGCATTCAGGACATT+TGG | - | chr5_1:23862528-23862547 | Msa0724780:intron | 40.0% | |
| TCTTGCATTCAGGACATTTG+GGG | - | chr5_1:23862530-23862549 | Msa0724780:intron | 40.0% | |
| AAAACCATGTATGCGAAGGA+AGG | + | chr5_1:23862574-23862593 | None:intergenic | 40.0% | |
| ! | CTTCGCATACATGGTTTTCT+CGG | - | chr5_1:23862576-23862595 | Msa0724780:intron | 40.0% |
| ! | TGGTTATGGAATTGACTCCT+TGG | - | chr5_1:23862659-23862678 | Msa0724780:intron | 40.0% |
| !! | TTAGTGTTGAGGTTTTGACG+AGG | - | chr5_1:23863125-23863144 | Msa0724780:intron | 40.0% |
| !! | AATTGGTGTTTTCTGTGCAC+TGG | + | chr5_1:23863282-23863301 | None:intergenic | 40.0% |
| CTTCTATCGTATGACACCAA+TGG | - | chr5_1:23863580-23863599 | Msa0724780:intron | 40.0% | |
| ! | GAAGCTGGGAATTTTCATAC+AGG | - | chr5_1:23863658-23863677 | Msa0724780:intron | 40.0% |
| CAGAGTTTCAACAATTGGCA+AGG | - | chr5_1:23863780-23863799 | Msa0724780:intron | 40.0% | |
| GATGAGTGGAAATAGTGACA+TGG | + | chr5_1:23863941-23863960 | None:intergenic | 40.0% | |
| TCGGCTGAAAACTCATTTGA+AGG | - | chr5_1:23863959-23863978 | Msa0724780:intron | 40.0% | |
| !! | TCTGAAGGAGGAGTATTGAA+AGG | - | chr5_1:23864032-23864051 | Msa0724780:intron | 40.0% |
| GCAAATTCTATGTAGGAGCA+TGG | + | chr5_1:23864507-23864526 | None:intergenic | 40.0% | |
| ACGCTCTGCAAATTCTATGT+AGG | + | chr5_1:23864514-23864533 | None:intergenic | 40.0% | |
| GAGATCACTGATCAGTCTTT+AGG | - | chr5_1:23864674-23864693 | Msa0724780:intron | 40.0% | |
| TCGGTGTATGTTTGGATTGA+TGG | + | chr5_1:23864866-23864885 | None:intergenic | 40.0% | |
| ATGAATGGTCGGTGTATGTT+TGG | + | chr5_1:23864874-23864893 | None:intergenic | 40.0% | |
| TCCTGCAGAAAATGAATGGT+CGG | + | chr5_1:23864885-23864904 | None:intergenic | 40.0% | |
| !! | TACTCTGCTAACTTGTTCCT+TGG | + | chr5_1:23865009-23865028 | None:intergenic | 40.0% |
| AAGGAACAAGTTAGCAGAGT+AGG | - | chr5_1:23865008-23865027 | Msa0724780:CDS | 40.0% | |
| ! | ATTTTGCGGAGAGGGATGAA+AGG | + | chr5_1:23860647-23860666 | None:intergenic | 45.0% |
| !! | AGACATGTTTCTGGCTGAAG+TGG | + | chr5_1:23860747-23860766 | None:intergenic | 45.0% |
| CTCCGTACCAAATATGCACT+TGG | + | chr5_1:23861160-23861179 | None:intergenic | 45.0% | |
| !! | TCTTTGGCATAATGGTGGGT+CGG | + | chr5_1:23861276-23861295 | None:intergenic | 45.0% |
| TGAGCCAATGTTTGGATCTG+TGG | - | chr5_1:23861522-23861541 | Msa0724780:intron | 45.0% | |
| ! | TTTGGGTCCACTTTCGGTTT+TGG | + | chr5_1:23862130-23862149 | None:intergenic | 45.0% |
| ACAGCAATTCTCCGCACTAT+CGG | - | chr5_1:23862234-23862253 | Msa0724780:intron | 45.0% | |
| GAGAATTTGTGGTCCTGTTC+TGG | - | chr5_1:23862313-23862332 | Msa0724780:intron | 45.0% | |
| !!! | AGCATTTTTCAGGGGTGTGT+TGG | - | chr5_1:23862410-23862429 | Msa0724780:intron | 45.0% |
| TGTTCTCGACAGAGTGAACA+AGG | + | chr5_1:23862491-23862510 | None:intergenic | 45.0% | |
| ACTTCCTTCCTTCGCATACA+TGG | - | chr5_1:23862567-23862586 | Msa0724780:intron | 45.0% | |
| CGAGAAAACCATGTATGCGA+AGG | + | chr5_1:23862578-23862597 | None:intergenic | 45.0% | |
| ! | ATGGAATTGACTCCTTGGCT+AGG | - | chr5_1:23862664-23862683 | Msa0724780:intron | 45.0% |
| ! | GCTAGGTTTTTCCTGGACTA+TGG | - | chr5_1:23862681-23862700 | Msa0724780:intron | 45.0% |
| !!! | AACGCCCTCAATTTTTTCCC+TGG | + | chr5_1:23862735-23862754 | None:intergenic | 45.0% |
| !! | GGAAAAAATTGAGGGCGTTG+TGG | - | chr5_1:23862736-23862755 | Msa0724780:intron | 45.0% |
| CACCAACATACCTGAGTTTG+CGG | + | chr5_1:23862861-23862880 | None:intergenic | 45.0% | |
| TACAGCTCTTGCGAGTTCAT+TGG | - | chr5_1:23863727-23863746 | Msa0724780:intron | 45.0% | |
| ACAGCTCTTGCGAGTTCATT+GGG | - | chr5_1:23863728-23863747 | Msa0724780:intron | 45.0% | |
| ! | ATGAGTTTTCAGCCGATGAG+TGG | + | chr5_1:23863955-23863974 | None:intergenic | 45.0% |
| CAGTTGAACTTTGCTGGAGA+AGG | + | chr5_1:23864434-23864453 | None:intergenic | 45.0% | |
| CTGCTACAGTTGAACTTTGC+TGG | + | chr5_1:23864440-23864459 | None:intergenic | 45.0% | |
| ! | ATGCTGCTTACTTCTGTGTG+AGG | + | chr5_1:23864564-23864583 | None:intergenic | 45.0% |
| ACAGTGCCACCTTGATTTCT+CGG | - | chr5_1:23864834-23864853 | Msa0724780:intron | 45.0% | |
| ! | ACCGACCATTCATTTTCTGC+AGG | - | chr5_1:23864881-23864900 | Msa0724780:intron | 45.0% |
| AAAGAGTTCCATAGGAGGGA+TGG | - | chr5_1:23864942-23864961 | Msa0724780:CDS | 45.0% | |
| ! | GATCTTTGAGAGCACATCCA+AGG | - | chr5_1:23864989-23865008 | Msa0724780:CDS | 45.0% |
| AGTTAGCAGAGTAGGCTCTT+AGG | - | chr5_1:23865016-23865035 | Msa0724780:CDS | 45.0% | |
| ! | TGGTGGGTCGGACAAAATCA+CGG | + | chr5_1:23861264-23861283 | None:intergenic | 50.0% |
| TATGAAGCACGGACACTCCT+CGG | - | chr5_1:23861324-23861343 | Msa0724780:intron | 50.0% | |
| !! | TACAAGTGTCGGTGTCGTGT+TGG | + | chr5_1:23861381-23861400 | None:intergenic | 50.0% |
| TCCTCCTCCAAAACCGAAAG+TGG | - | chr5_1:23862120-23862139 | Msa0724780:intron | 50.0% | |
| !!! | TCCACTTTCGGTTTTGGAGG+AGG | + | chr5_1:23862124-23862143 | None:intergenic | 50.0% |
| TTTCCACCACGCTATTTGGG+TGG | - | chr5_1:23862152-23862171 | Msa0724780:intron | 50.0% | |
| CAGCAATTCTCCGCACTATC+GGG | - | chr5_1:23862235-23862254 | Msa0724780:intron | 50.0% | |
| AGCAATTCTCCGCACTATCG+GGG | - | chr5_1:23862236-23862255 | Msa0724780:intron | 50.0% | |
| CAACATGATCCCCGATAGTG+CGG | + | chr5_1:23862248-23862267 | None:intergenic | 50.0% | |
| CACTATCGGGGATCATGTTG+TGG | - | chr5_1:23862248-23862267 | Msa0724780:intron | 50.0% | |
| !! | AGGGGGGTGAAGCATTTTTC+AGG | - | chr5_1:23862400-23862419 | Msa0724780:intron | 50.0% |
| !! | GGGGGGTGAAGCATTTTTCA+GGG | - | chr5_1:23862401-23862420 | Msa0724780:intron | 50.0% |
| !! | GGGGGTGAAGCATTTTTCAG+GGG | - | chr5_1:23862402-23862421 | Msa0724780:intron | 50.0% |
| ! | CTCCTTGGCTAGGTTTTTCC+TGG | - | chr5_1:23862674-23862693 | Msa0724780:intron | 50.0% |
| GTCCAGGAAAAACCTAGCCA+AGG | + | chr5_1:23862679-23862698 | None:intergenic | 50.0% | |
| GTTGCGTATAGCCATAGTCC+AGG | + | chr5_1:23862695-23862714 | None:intergenic | 50.0% | |
| CTATGGCTATACGCAACGAG+AGG | - | chr5_1:23862698-23862717 | Msa0724780:intron | 50.0% | |
| GAGAGGAGCTGAGATTTCCA+GGG | - | chr5_1:23862715-23862734 | Msa0724780:intron | 50.0% | |
| CCAGAAAGTGAATCAGCAGG+AGG | + | chr5_1:23862768-23862787 | None:intergenic | 50.0% | |
| !! | CCTCCTGCTGATTCACTTTC+TGG | - | chr5_1:23862765-23862784 | Msa0724780:intron | 50.0% |
| CTGCCAGAAAGTGAATCAGC+AGG | + | chr5_1:23862771-23862790 | None:intergenic | 50.0% | |
| ! | GCTGATTCACTTTCTGGCAG+TGG | - | chr5_1:23862771-23862790 | Msa0724780:intron | 50.0% |
| TCAGATGAGTCCGCAAACTC+AGG | - | chr5_1:23862848-23862867 | Msa0724780:intron | 50.0% | |
| GTCCGCAAACTCAGGTATGT+TGG | - | chr5_1:23862856-23862875 | Msa0724780:intron | 50.0% | |
| TTTGCTGGAGAAGGCCATCA+GGG | + | chr5_1:23864425-23864444 | None:intergenic | 50.0% | |
| CAGTGCCACCTTGATTTCTC+GGG | - | chr5_1:23864835-23864854 | Msa0724780:intron | 50.0% | |
| TGGGTCGGACAAAATCACGG+TGG | + | chr5_1:23861261-23861280 | None:intergenic | 55.0% | |
| TCGTGTTGGACTGTCGGTGT+CGG | + | chr5_1:23861367-23861386 | None:intergenic | 55.0% | |
| !! | TCGGTGTCGTGTTGGACTGT+CGG | + | chr5_1:23861373-23861392 | None:intergenic | 55.0% |
| !! | GGGTCCACTTTCGGTTTTGG+AGG | + | chr5_1:23862127-23862146 | None:intergenic | 55.0% |
| TCACCACCCAAATAGCGTGG+TGG | + | chr5_1:23862158-23862177 | None:intergenic | 55.0% | |
| ACGTCACCACCCAAATAGCG+TGG | + | chr5_1:23862161-23862180 | None:intergenic | 55.0% | |
| GACCATGAGTGAGACTGCGT+TGG | - | chr5_1:23862202-23862221 | Msa0724780:intron | 55.0% | |
| GACCAACGCAGTCTCACTCA+TGG | + | chr5_1:23862207-23862226 | None:intergenic | 55.0% | |
| GGGGATCATGTTGTGGTCTG+CGG | - | chr5_1:23862255-23862274 | Msa0724780:intron | 55.0% | |
| GGGATCATGTTGTGGTCTGC+GGG | - | chr5_1:23862256-23862275 | Msa0724780:intron | 55.0% | |
| CGAGAGGAGCTGAGATTTCC+AGG | - | chr5_1:23862714-23862733 | Msa0724780:intron | 55.0% | |
| ! | TCACTTTCTGGCAGTGGCAG+TGG | - | chr5_1:23862777-23862796 | Msa0724780:intron | 55.0% |
| GAGAGAGTGAGTATGCTGCG+TGG | - | chr5_1:23863889-23863908 | Msa0724780:intron | 55.0% | |
| GCTGCGTGGACGCTAGTAAA+TGG | - | chr5_1:23863903-23863922 | Msa0724780:intron | 55.0% | |
| TCAGGGCTCACTGGAAATGG+AGG | + | chr5_1:23864408-23864427 | None:intergenic | 55.0% | |
| CCATCAGGGCTCACTGGAAA+TGG | + | chr5_1:23864411-23864430 | None:intergenic | 55.0% | |
| CCATTTCCAGTGAGCCCTGA+TGG | - | chr5_1:23864408-23864427 | Msa0724780:intron | 55.0% | |
| CTTTGCTGGAGAAGGCCATC+AGG | + | chr5_1:23864426-23864445 | None:intergenic | 55.0% | |
| CGACTCCCGAGAAATCAAGG+TGG | + | chr5_1:23864843-23864862 | None:intergenic | 55.0% | |
| TGGCGACTCCCGAGAAATCA+AGG | + | chr5_1:23864846-23864865 | None:intergenic | 55.0% | |
| CCTCGAAACCATCCCTCCTA+TGG | + | chr5_1:23864953-23864972 | None:intergenic | 55.0% | |
| CCATAGGAGGGATGGTTTCG+AGG | - | chr5_1:23864950-23864969 | Msa0724780:CDS | 55.0% | |
| GCACGGACACTCCTCGGATT+AGG | - | chr5_1:23861330-23861349 | Msa0724780:intron | 60.0% | |
| TGTCGGACACGCCTAATCCG+AGG | + | chr5_1:23861344-23861363 | None:intergenic | 60.0% | |
| !! | TGGACTGTCGGTGTCGGTGT+CGG | + | chr5_1:23861361-23861380 | None:intergenic | 60.0% |
| GGCAGTGGCAGTGGCATGAA+TGG | - | chr5_1:23862786-23862805 | Msa0724780:intron | 60.0% | |
| AGAAGGCCATCAGGGCTCAC+TGG | + | chr5_1:23864417-23864436 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 23860495 | 23865251 | 23860495 | ID=Msa0724780;Name=Msa0724780 |
| chr5_1 | mRNA | 23860495 | 23865251 | 23860495 | ID=Msa0724780-mRNA-1;Parent=Msa0724780;Name=Msa0724780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=113|1|1|1|1|1|7|214|373 |
| chr5_1 | exon | 23860495 | 23860807 | 23860495 | ID=Msa0724780-mRNA-1:exon:8782;Parent=Msa0724780-mRNA-1 |
| chr5_1 | exon | 23861174 | 23861328 | 23861174 | ID=Msa0724780-mRNA-1:exon:8781;Parent=Msa0724780-mRNA-1 |
| chr5_1 | exon | 23861693 | 23861856 | 23861693 | ID=Msa0724780-mRNA-1:exon:8780;Parent=Msa0724780-mRNA-1 |
| chr5_1 | exon | 23861945 | 23862066 | 23861945 | ID=Msa0724780-mRNA-1:exon:8779;Parent=Msa0724780-mRNA-1 |
| chr5_1 | exon | 23862877 | 23863092 | 23862877 | ID=Msa0724780-mRNA-1:exon:8778;Parent=Msa0724780-mRNA-1 |
| chr5_1 | exon | 23863195 | 23863344 | 23863195 | ID=Msa0724780-mRNA-1:exon:8777;Parent=Msa0724780-mRNA-1 |
| chr5_1 | exon | 23864923 | 23865251 | 23864923 | ID=Msa0724780-mRNA-1:exon:8776;Parent=Msa0724780-mRNA-1 |
| chr5_1 | five_prime_UTR | 23865139 | 23865251 | 23865139 | ID=Msa0724780-mRNA-1:five_prime_utr;Parent=Msa0724780-mRNA-1 |
| chr5_1 | CDS | 23864923 | 23865138 | 23864923 | ID=Msa0724780-mRNA-1:cds;Parent=Msa0724780-mRNA-1 |
| chr5_1 | CDS | 23863195 | 23863344 | 23863195 | ID=Msa0724780-mRNA-1:cds;Parent=Msa0724780-mRNA-1 |
| chr5_1 | CDS | 23862877 | 23863092 | 23862877 | ID=Msa0724780-mRNA-1:cds;Parent=Msa0724780-mRNA-1 |
| chr5_1 | CDS | 23861945 | 23862066 | 23861945 | ID=Msa0724780-mRNA-1:cds;Parent=Msa0724780-mRNA-1 |
| chr5_1 | CDS | 23861693 | 23861856 | 23861693 | ID=Msa0724780-mRNA-1:cds;Parent=Msa0724780-mRNA-1 |
| chr5_1 | CDS | 23861174 | 23861328 | 23861174 | ID=Msa0724780-mRNA-1:cds;Parent=Msa0724780-mRNA-1 |
| chr5_1 | CDS | 23860709 | 23860807 | 23860709 | ID=Msa0724780-mRNA-1:cds;Parent=Msa0724780-mRNA-1 |
| chr5_1 | three_prime_UTR | 23860495 | 23860708 | 23860495 | ID=Msa0724780-mRNA-1:three_prime_utr;Parent=Msa0724780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
