Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547440 | XP_003606450.1 | 99.041 | 417 | 4 | 0 | 1 | 417 | 1 | 417 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547440 | sp|Q75IM9|IVD_ORYSJ | 88.571 | 385 | 44 | 0 | 33 | 417 | 25 | 409 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547440 | G7JQF7 | 99.041 | 417 | 4 | 0 | 1 | 417 | 1 | 417 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081660 | Msa0547440 | 0.840207 | 9.990304e-58 | -8.615850e-47 |
| Msa0127870 | Msa0547440 | 0.842331 | 2.760721e-58 | -8.615850e-47 |
| Msa0174010 | Msa0547440 | 0.843136 | 1.686907e-58 | -8.615850e-47 |
| Msa0203110 | Msa0547440 | 0.817090 | 3.948338e-52 | -8.615850e-47 |
| Msa0390550 | Msa0547440 | 0.841720 | 4.004226e-58 | -8.615850e-47 |
| Msa0481100 | Msa0547440 | 0.801534 | 8.607143e-49 | -8.615850e-47 |
| Msa0547440 | Msa0562800 | 0.800517 | 1.388680e-48 | -8.615850e-47 |
| Msa0547440 | Msa0577370 | 0.803646 | 3.156976e-49 | -8.615850e-47 |
| Msa0547440 | Msa0602180 | 0.892522 | 1.469393e-74 | -8.615850e-47 |
| Msa0547440 | Msa0643520 | 0.833219 | 6.047423e-56 | -8.615850e-47 |
| Msa0547440 | Msa0683000 | 0.863882 | 1.812737e-64 | -8.615850e-47 |
| Msa0547440 | Msa0683030 | 0.851451 | 8.801019e-61 | -8.615850e-47 |
| Msa0547440 | Msa0724780 | 0.846948 | 1.575486e-59 | -8.615850e-47 |
| Msa0547440 | Msa0844830 | 0.856103 | 4.032892e-62 | -8.615850e-47 |
| Msa0547440 | Msa1024710 | 0.803136 | 4.026719e-49 | -8.615850e-47 |
| Msa0547440 | Msa1152430 | 0.839949 | 1.166341e-57 | -8.615850e-47 |
| Msa0547440 | Msa1217950 | 0.807205 | 5.663792e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547440 | MtrunA17_Chr4g0029681 | 99.041 | 417 | 4 | 0 | 1 | 417 | 1 | 417 | 0.0 | 866 |
| Msa0547440 | MtrunA17_Chr7g0242641 | 29.641 | 334 | 228 | 4 | 81 | 413 | 17 | 344 | 1.45e-44 | 158 |
| Msa0547440 | MtrunA17_Chr2g0295521 | 26.736 | 288 | 199 | 6 | 134 | 411 | 519 | 804 | 2.34e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547440 | AT3G45300.1 | 89.153 | 378 | 41 | 0 | 40 | 417 | 32 | 409 | 0.0 | 699 |
| Msa0547440 | AT3G51840.1 | 26.790 | 377 | 267 | 5 | 38 | 413 | 54 | 422 | 7.26e-42 | 153 |
| Msa0547440 | AT3G06810.1 | 26.736 | 288 | 199 | 6 | 134 | 411 | 530 | 815 | 2.28e-21 | 97.4 |
| Msa0547440 | AT5G65110.1 | 24.309 | 362 | 216 | 14 | 109 | 415 | 133 | 491 | 1.35e-11 | 67.0 |
| Msa0547440 | AT5G65110.2 | 23.889 | 360 | 222 | 13 | 109 | 416 | 133 | 492 | 1.44e-11 | 66.6 |
Find 129 sgRNAs with CRISPR-Local
Find 471 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTAGTTTATCCAATTTC+TGG | 0.126605 | 4_1:+40665074 | None:intergenic |
| GGATCTGTTGGTCTTTCTTA+TGG | 0.218631 | 4_1:-40666380 | Msa0547440:CDS |
| ATTCTTGTTCTAATCATCTT+TGG | 0.276096 | 4_1:+40668643 | None:intergenic |
| ATTCAGTACTGCCCAGAAAT+TGG | 0.276268 | 4_1:-40665086 | Msa0547440:CDS |
| TGTTAACTTGTGGAAAAGTA+TGG | 0.285642 | 4_1:-40667275 | Msa0547440:CDS |
| GAGATCAGAAGAATGATTAT+TGG | 0.293324 | 4_1:-40662221 | Msa0547440:CDS |
| TGCTTATTTGCAGAGGAGTA+TGG | 0.296519 | 4_1:-40666464 | Msa0547440:intron |
| GGAGTCTATGTCATGATGTC+TGG | 0.301184 | 4_1:-40664213 | Msa0547440:CDS |
| GGAATCTATTACATTACTTT+TGG | 0.301187 | 4_1:+40661953 | None:intergenic |
| AGCAACACAAGTTGCTTTGC+AGG | 0.308452 | 4_1:-40662342 | Msa0547440:CDS |
| AGGTCTGAGATTCAATAATT+TGG | 0.315835 | 4_1:-40661978 | Msa0547440:three_prime_UTR |
| CATGATGTCTGGGCTGGATT+TGG | 0.319026 | 4_1:-40664202 | Msa0547440:CDS |
| AGCAGTTCGGTCGTCCTATT+GGG | 0.323036 | 4_1:-40664098 | Msa0547440:CDS |
| GAGCAGTTCGGTCGTCCTAT+TGG | 0.326208 | 4_1:-40664099 | Msa0547440:CDS |
| GTTCCGGAGGAAAATGTTCT+TGG | 0.329541 | 4_1:-40664919 | Msa0547440:CDS |
| TGCAAAGCTGATCGCGTAGA+TGG | 0.332506 | 4_1:-40665641 | Msa0547440:CDS |
| TCTGAAAAGAGTTGAGAAAA+TGG | 0.338845 | 4_1:+40668606 | None:intergenic |
| TCTTCTGATCTCACTTGTTC+CGG | 0.339052 | 4_1:+40662232 | None:intergenic |
| CTTCGAGAATTGCTTTGTTC+CGG | 0.341846 | 4_1:-40664935 | Msa0547440:CDS |
| TACTAAATAGTAAACTAATA+TGG | 0.341856 | 4_1:+40668811 | None:intergenic |
| TGGGGATCATGTGGGAGCTT+TGG | 0.343115 | 4_1:-40665791 | Msa0547440:CDS |
| AAGCACATACAGATCTAATA+TGG | 0.347321 | 4_1:+40662070 | None:intergenic |
| ACCTATTGTTGGTACTGTAT+TGG | 0.353949 | 4_1:-40661848 | Msa0547440:three_prime_UTR |
| AACAAGATGTGGTGTACTAA+TGG | 0.357977 | 4_1:-40665599 | Msa0547440:CDS |
| CAGCGCTACTACTAATTTGA+AGG | 0.364024 | 4_1:-40668944 | Msa0547440:five_prime_UTR |
| GAAGAGATTAGCCGAGCTTC+AGG | 0.365845 | 4_1:-40666401 | Msa0547440:CDS |
| CCCTAGTTTATCCAATTTCT+GGG | 0.377085 | 4_1:+40665075 | None:intergenic |
| TCAACTTTGAAGCTTATCTC+TGG | 0.384395 | 4_1:-40665811 | Msa0547440:intron |
| TTGCAGGCGATACAATGTTT+AGG | 0.392157 | 4_1:-40662326 | Msa0547440:CDS |
| CTTCGATGACACTCAGATAC+AGG | 0.395511 | 4_1:-40668524 | Msa0547440:intron |
| TTGAAGCAAATCATTCCTCT+TGG | 0.399533 | 4_1:-40662029 | Msa0547440:three_prime_UTR |
| TATTGTATATGATAAGATAT+CGG | 0.403469 | 4_1:+40668712 | None:intergenic |
| ATGGAATGGGTGTAGTGTTT+TGG | 0.406758 | 4_1:+40668830 | None:intergenic |
| TGGGGAGTTTCAGTTTATAC+AGG | 0.418608 | 4_1:-40664079 | Msa0547440:intron |
| ATGCGAAGCTCTACGAGATC+GGG | 0.423929 | 4_1:-40662256 | Msa0547440:CDS |
| TGCTCTCTTTGTCGAACATA+AGG | 0.427952 | 4_1:+40664117 | None:intergenic |
| GATTGTTGATTACTTAGCTT+GGG | 0.435043 | 4_1:+40668677 | None:intergenic |
| TGATTGTTGATTACTTAGCT+TGG | 0.437150 | 4_1:+40668676 | None:intergenic |
| ATAAACTGAAACTCCCCAAT+AGG | 0.438380 | 4_1:+40664084 | None:intergenic |
| GCAGAGGAGTATGGAGGGCT+TGG | 0.439310 | 4_1:-40666455 | Msa0547440:intron |
| TTCCGGAGGAAAATGTTCTT+GGG | 0.444098 | 4_1:-40664918 | Msa0547440:CDS |
| TGCAGTGCCTTACCTATTGT+TGG | 0.444742 | 4_1:-40661859 | Msa0547440:three_prime_UTR |
| GACGCAACAGCAGGGTCAAA+AGG | 0.449570 | 4_1:-40665379 | Msa0547440:CDS |
| CATACTAATGTTTGAGCAGT+TGG | 0.450831 | 4_1:+40665575 | None:intergenic |
| CAACTTTGAAGCTTATCTCT+GGG | 0.454090 | 4_1:-40665810 | Msa0547440:intron |
| ACAAGATGTGGTGTACTAAT+GGG | 0.455535 | 4_1:-40665598 | Msa0547440:CDS |
| ATCATCGAGAAGGGAATGCC+TGG | 0.460608 | 4_1:-40665343 | Msa0547440:CDS |
| CTATGTCATGATGTCTGGGC+TGG | 0.467392 | 4_1:-40664208 | Msa0547440:CDS |
| TAGCTGAATCAGATAGTAGT+AGG | 0.469758 | 4_1:+40668895 | None:intergenic |
| GGCAGTTGAGATAAGGATGA+AGG | 0.474878 | 4_1:+40668851 | None:intergenic |
| ATAGTAAACTAATATGGAAT+GGG | 0.480097 | 4_1:+40668817 | None:intergenic |
| ATACATCTTTACAGTCTTCA+CGG | 0.482149 | 4_1:-40663939 | Msa0547440:intron |
| AATAGTAAACTAATATGGAA+TGG | 0.482151 | 4_1:+40668816 | None:intergenic |
| GAGTATGGAGGGCTTGGTCT+AGG | 0.483008 | 4_1:-40666449 | Msa0547440:CDS |
| TCCAATACAGTACCAACAAT+AGG | 0.483846 | 4_1:+40661847 | None:intergenic |
| TTACCAGCTGATTGATACAT+AGG | 0.485087 | 4_1:+40666345 | None:intergenic |
| GAAAATGTTCTTGGGAAAGA+AGG | 0.485757 | 4_1:-40664910 | Msa0547440:CDS |
| ATGGGAGAATTTAATCTCCA+TGG | 0.486600 | 4_1:-40667256 | Msa0547440:CDS |
| TTCCTCTTGGAAAATGATGA+TGG | 0.489349 | 4_1:-40662016 | Msa0547440:three_prime_UTR |
| GCAAAGCTGATCGCGTAGAT+GGG | 0.489399 | 4_1:-40665640 | Msa0547440:CDS |
| TATTGGACGTGATCTCTTCA+AGG | 0.497284 | 4_1:-40662204 | Msa0547440:CDS |
| TGATTACTTAGCTTGGGTGT+TGG | 0.500897 | 4_1:+40668683 | None:intergenic |
| GATGCGAAGCTCTACGAGAT+CGG | 0.508301 | 4_1:-40662257 | Msa0547440:CDS |
| CTTGTATCATTGTATAGCAA+TGG | 0.513555 | 4_1:-40666423 | Msa0547440:CDS |
| GAGTCTATGTCATGATGTCT+GGG | 0.517964 | 4_1:-40664212 | Msa0547440:CDS |
| CTCCATGGGATTACTGCACC+AGG | 0.518403 | 4_1:-40667241 | Msa0547440:intron |
| GTTCTAATCATCTTTGGCAA+CGG | 0.520212 | 4_1:+40668649 | None:intergenic |
| GCTTATCTCTGGGGATCATG+TGG | 0.520908 | 4_1:-40665800 | Msa0547440:CDS |
| TACTAATTTCAGGATTGTGC+TGG | 0.524388 | 4_1:-40662389 | Msa0547440:intron |
| AGCCGAGCTTCAGGATCTGT+TGG | 0.526762 | 4_1:-40666392 | Msa0547440:CDS |
| TAACCTATGTATCAATCAGC+TGG | 0.527816 | 4_1:-40666348 | Msa0547440:intron |
| TTATGTGTATTCTGTAGCTC+GGG | 0.527867 | 4_1:-40663834 | Msa0547440:CDS |
| CTACTACTAATTTGAAGGAA+AGG | 0.528150 | 4_1:-40668939 | Msa0547440:five_prime_UTR |
| AAGCTCTACGAGATCGGGGC+CGG | 0.529045 | 4_1:-40662251 | Msa0547440:CDS |
| ATACAATGTTTAGGTGGAAA+CGG | 0.532313 | 4_1:-40662317 | Msa0547440:CDS |
| CTTATGTGTATTCTGTAGCT+CGG | 0.533799 | 4_1:-40663835 | Msa0547440:CDS |
| CACTGCATTTATCATCGAGA+AGG | 0.536640 | 4_1:-40665353 | Msa0547440:CDS |
| TACAGTACCAACAATAGGTA+AGG | 0.541934 | 4_1:+40661852 | None:intergenic |
| CGAGAATTGCTTTGTTCCGG+AGG | 0.542177 | 4_1:-40664932 | Msa0547440:CDS |
| AAAATGTTCTTGGGAAAGAA+GGG | 0.542799 | 4_1:-40664909 | Msa0547440:CDS |
| TTGACTGGAACTGAGCGCCT+CGG | 0.545543 | 4_1:-40662153 | Msa0547440:three_prime_UTR |
| GTTAACTTGTGGAAAAGTAT+GGG | 0.545610 | 4_1:-40667274 | Msa0547440:CDS |
| TAATTTAGGATGTTAACTTG+TGG | 0.547605 | 4_1:-40667285 | Msa0547440:intron |
| CCCAGAAATTGGATAAACTA+GGG | 0.547673 | 4_1:-40665075 | Msa0547440:CDS |
| ATAATTTGTGTGATCAATGT+GGG | 0.552867 | 4_1:+40667785 | None:intergenic |
| TGGGAGAATTTAATCTCCAT+GGG | 0.554351 | 4_1:-40667255 | Msa0547440:CDS |
| TCAGTTCCAGTCAAAATCCA+AGG | 0.562699 | 4_1:+40662162 | None:intergenic |
| GCCCAGAAATTGGATAAACT+AGG | 0.571430 | 4_1:-40665076 | Msa0547440:CDS |
| CTGCATAATACCAAGGGGAC+CGG | 0.575815 | 4_1:+40664161 | None:intergenic |
| AACATAAATAACTGTACTGG+AGG | 0.582553 | 4_1:+40661932 | None:intergenic |
| GTTCGACAAAGAGAGCAGTT+CGG | 0.583442 | 4_1:-40664111 | Msa0547440:CDS |
| CAAAGCTGATCGCGTAGATG+GGG | 0.585017 | 4_1:-40665639 | Msa0547440:CDS |
| TATGTGAACGAGTATCCAAC+CGG | 0.585904 | 4_1:-40662293 | Msa0547440:CDS |
| CAGGCGATACAATGTTTAGG+TGG | 0.587882 | 4_1:-40662323 | Msa0547440:CDS |
| AATAATTTGTGTGATCAATG+TGG | 0.589596 | 4_1:+40667784 | None:intergenic |
| TACTTAACGGGAACAAGATG+TGG | 0.589905 | 4_1:-40665610 | Msa0547440:CDS |
| GACCAACAGATCCTGAAGCT+CGG | 0.593218 | 4_1:+40666390 | None:intergenic |
| AACTTTGAAGCTTATCTCTG+GGG | 0.593388 | 4_1:-40665809 | Msa0547440:intron |
| TCACACAAATTATTTCCCAA+AGG | 0.594666 | 4_1:-40667775 | Msa0547440:intron |
| TACCTGGTGCAGTAATCCCA+TGG | 0.597662 | 4_1:+40667239 | None:intergenic |
| ATCGAAGAGGAATGAAGTAG+TGG | 0.599042 | 4_1:+40668540 | None:intergenic |
| CGCATCTCTGAGGAGACGAC+CGG | 0.599352 | 4_1:+40662274 | None:intergenic |
| CAGTTCCAGTCAAAATCCAA+GGG | 0.600077 | 4_1:+40662163 | None:intergenic |
| GTAGCTCGGGACTGTGACAA+CGG | 0.602533 | 4_1:-40663821 | Msa0547440:CDS |
| TTATTTGCAGAGGAGTATGG+AGG | 0.603677 | 4_1:-40666461 | Msa0547440:intron |
| CTTATCTCTGGGGATCATGT+GGG | 0.603883 | 4_1:-40665799 | Msa0547440:CDS |
| TATTTGCAGAGGAGTATGGA+GGG | 0.604314 | 4_1:-40666460 | Msa0547440:intron |
| TGTCTGGGCTGGATTTGGAA+AGG | 0.605886 | 4_1:-40664197 | Msa0547440:CDS |
| ACTGCATTTATCATCGAGAA+GGG | 0.609190 | 4_1:-40665352 | Msa0547440:CDS |
| ATCAATGTGGGAAGCATGAG+GGG | 0.621018 | 4_1:+40667797 | None:intergenic |
| GTTCTTGGGAAAGAAGGGAA+AGG | 0.623097 | 4_1:-40664904 | Msa0547440:intron |
| ACATGACTGCATAATACCAA+GGG | 0.627108 | 4_1:+40664155 | None:intergenic |
| CTCTTTGTCGAACATAAGGA+AGG | 0.631959 | 4_1:+40664121 | None:intergenic |
| GTATCTGAGTGTCATCGAAG+AGG | 0.631985 | 4_1:+40668527 | None:intergenic |
| TATATGATAAGATATCGGTA+TGG | 0.635782 | 4_1:+40668717 | None:intergenic |
| TTGGATAAACTAGGGATGCG+AGG | 0.637106 | 4_1:-40665067 | Msa0547440:CDS |
| TCTCTGAGGAGACGACCGGT+TGG | 0.638940 | 4_1:+40662278 | None:intergenic |
| TCATCGAGAAGGGAATGCCT+GGG | 0.639355 | 4_1:-40665342 | Msa0547440:intron |
| GACATGACTGCATAATACCA+AGG | 0.639799 | 4_1:+40664154 | None:intergenic |
| GATCAATGTGGGAAGCATGA+GGG | 0.653184 | 4_1:+40667796 | None:intergenic |
| GCAGTTCGGTCGTCCTATTG+GGG | 0.659632 | 4_1:-40664097 | Msa0547440:CDS |
| TGATCAATGTGGGAAGCATG+AGG | 0.662322 | 4_1:+40667795 | None:intergenic |
| AAAGCTGATCGCGTAGATGG+GGG | 0.663546 | 4_1:-40665638 | Msa0547440:CDS |
| CGTAGAGCTTCGCATCTCTG+AGG | 0.668421 | 4_1:+40662264 | None:intergenic |
| TGCGAAGCTCTACGAGATCG+GGG | 0.673463 | 4_1:-40662255 | Msa0547440:CDS |
| CAACGGAAAAGTTGACCCAA+AGG | 0.674588 | 4_1:-40663804 | Msa0547440:intron |
| AGTTCCAGTCAAAATCCAAG+GGG | 0.739919 | 4_1:+40662164 | None:intergenic |
| TTACAAAGGAATCATCTCCG+AGG | 0.747071 | 4_1:+40662136 | None:intergenic |
| CATGACTGCATAATACCAAG+GGG | 0.751632 | 4_1:+40664156 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTAAACTTTTTCATT+TGG | - | chr4_1:40662316-40662335 | Msa0547440:CDS | 10.0% |
| !!! | AAATTTAAACTTTTTCATTT+GGG | - | chr4_1:40662317-40662336 | Msa0547440:CDS | 10.0% |
| !! | TTAAACAAAGAAAATTAAAA+TGG | + | chr4_1:40665738-40665757 | None:intergenic | 10.0% |
| !! | GAAATAATCTTTATATTATT+TGG | - | chr4_1:40665913-40665932 | Msa0547440:intron | 10.0% |
| !! | AATTGAAAAATTCAATTAAA+GGG | + | chr4_1:40667074-40667093 | None:intergenic | 10.0% |
| !! | TAATTGAAAAATTCAATTAA+AGG | + | chr4_1:40667075-40667094 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGAAGAA+TGG | - | chr4_1:40667438-40667457 | Msa0547440:intron | 10.0% |
| !! | AAGATAATAAAAAAAATCAA+AGG | + | chr4_1:40667647-40667666 | None:intergenic | 10.0% |
| !! | TACTAAATAGTAAACTAATA+TGG | + | chr4_1:40661947-40661966 | None:intergenic | 15.0% |
| !! | TATTGTATATGATAAGATAT+CGG | + | chr4_1:40662046-40662065 | None:intergenic | 15.0% |
| !!! | TTTTACAACTAACTAAAAAT+GGG | + | chr4_1:40662299-40662318 | None:intergenic | 15.0% |
| !!! | TTTTTACAACTAACTAAAAA+TGG | + | chr4_1:40662300-40662319 | None:intergenic | 15.0% |
| !!! | TTTTACAAAAACAGAATAAT+GGG | + | chr4_1:40662373-40662392 | None:intergenic | 15.0% |
| !!! | TTTTTACAAAAACAGAATAA+TGG | + | chr4_1:40662374-40662393 | None:intergenic | 15.0% |
| !!! | AAAAATTGAACTTTTTTAGT+TGG | - | chr4_1:40662390-40662409 | Msa0547440:intron | 15.0% |
| !!! | AAAATTGAACTTTTTTAGTT+GGG | - | chr4_1:40662391-40662410 | Msa0547440:intron | 15.0% |
| !!! | TTTTATGAAAACAGATAAAT+GGG | + | chr4_1:40662798-40662817 | None:intergenic | 15.0% |
| !!! | TTTTTATGAAAACAGATAAA+TGG | + | chr4_1:40662799-40662818 | None:intergenic | 15.0% |
| !!! | AATTTGAACTTTTTTTCATT+TGG | - | chr4_1:40662817-40662836 | Msa0547440:intron | 15.0% |
| !!! | ATTTGAACTTTTTTTCATTT+GGG | - | chr4_1:40662818-40662837 | Msa0547440:intron | 15.0% |
| !! | ATTTAATAATACATACCTTT+GGG | + | chr4_1:40662998-40663017 | None:intergenic | 15.0% |
| !!! | ATTTTAGAATACAGAAAATA+CGG | + | chr4_1:40663615-40663634 | None:intergenic | 15.0% |
| !!! | ATTTTATATGTCTTACAATT+TGG | + | chr4_1:40665001-40665020 | None:intergenic | 15.0% |
| !!! | GTTTTATACTATATATATGT+GGG | + | chr4_1:40665263-40665282 | None:intergenic | 15.0% |
| !! | ACATATATATAGTATAAAAC+CGG | - | chr4_1:40665263-40665282 | Msa0547440:intron | 15.0% |
| !! | ACTGTAATAAAATGATTTAT+CGG | + | chr4_1:40665594-40665613 | None:intergenic | 15.0% |
| !!! | TAGTCTTTATTATTTTTGAA+AGG | - | chr4_1:40665891-40665910 | Msa0547440:intron | 15.0% |
| !! | ATAAAATAAACCCTTAATTT+GGG | + | chr4_1:40666122-40666141 | None:intergenic | 15.0% |
| !! | AATAAAATAAACCCTTAATT+TGG | + | chr4_1:40666123-40666142 | None:intergenic | 15.0% |
| !!! | AATTATTAAGAAAGACTTTT+TGG | - | chr4_1:40667618-40667637 | Msa0547440:intron | 15.0% |
| !!! | AATGAAAATTACTTTTACAA+AGG | + | chr4_1:40668636-40668655 | None:intergenic | 15.0% |
| !!! | AACCTTTTTGAATAATAAAA+AGG | - | chr4_1:40668855-40668874 | Msa0547440:five_prime_UTR | 15.0% |
| !!! | ACCTTTTTGAATAATAAAAA+GGG | - | chr4_1:40668856-40668875 | Msa0547440:five_prime_UTR | 15.0% |
| !!! | TAGGATAGTTATTTTATTCA+CGG | + | chr4_1:40661844-40661863 | None:intergenic | 20.0% |
| !! | ATAGTAAACTAATATGGAAT+GGG | + | chr4_1:40661941-40661960 | None:intergenic | 20.0% |
| !! | AATAGTAAACTAATATGGAA+TGG | + | chr4_1:40661942-40661961 | None:intergenic | 20.0% |
| !! | TTTACAACTAACTAAAAATG+GGG | + | chr4_1:40662298-40662317 | None:intergenic | 20.0% |
| !! | TTTACAAAAACAGAATAATG+GGG | + | chr4_1:40662372-40662391 | None:intergenic | 20.0% |
| !! | GTTACAAAAACAGATAAATT+GGG | + | chr4_1:40662443-40662462 | None:intergenic | 20.0% |
| !! | TGTTACAAAAACAGATAAAT+TGG | + | chr4_1:40662444-40662463 | None:intergenic | 20.0% |
| !!! | AATTTGAACTTTTTATACCT+TGG | - | chr4_1:40662463-40662482 | Msa0547440:intron | 20.0% |
| !! | TTTATGAAAACAGATAAATG+GGG | + | chr4_1:40662797-40662816 | None:intergenic | 20.0% |
| !! | CATTTAATAATACATACCTT+TGG | + | chr4_1:40662999-40663018 | None:intergenic | 20.0% |
| !! | TCCTTCATATAAAAACATTA+GGG | - | chr4_1:40663292-40663311 | Msa0547440:intron | 20.0% |
| !!! | TTTTTAGTAAGAGACTAAAT+TGG | - | chr4_1:40663332-40663351 | Msa0547440:intron | 20.0% |
| !!! | TTTTAGTAAGAGACTAAATT+GGG | - | chr4_1:40663333-40663352 | Msa0547440:intron | 20.0% |
| !!! | GAAAATAAAAAAGTATTACC+TGG | + | chr4_1:40663535-40663554 | None:intergenic | 20.0% |
| !!! | TTTTAGAATACAGAAAATAC+GGG | + | chr4_1:40663614-40663633 | None:intergenic | 20.0% |
| !!! | TGTAATTTCTAGAATCATTT+TGG | - | chr4_1:40663801-40663820 | Msa0547440:intron | 20.0% |
| !! | ATTACACAAATTGAATGATA+TGG | - | chr4_1:40664144-40664163 | Msa0547440:CDS | 20.0% |
| !! | AAATTGAATGATATGGAATA+GGG | - | chr4_1:40664151-40664170 | Msa0547440:CDS | 20.0% |
| !! | CTTAAATATTTGATATTCCA+AGG | - | chr4_1:40665034-40665053 | Msa0547440:intron | 20.0% |
| !!! | GGTTTTATACTATATATATG+TGG | + | chr4_1:40665264-40665283 | None:intergenic | 20.0% |
| !!! | ATATCTAAGATCTGTTTTAA+AGG | - | chr4_1:40665973-40665992 | Msa0547440:intron | 20.0% |
| !! | AGTAAAACTTCAAAAATAAG+TGG | + | chr4_1:40666086-40666105 | None:intergenic | 20.0% |
| !!! | TCTGTTTCTTATTGTTAATA+CGG | - | chr4_1:40666986-40667005 | Msa0547440:intron | 20.0% |
| !! | AAAATGTAAACATCATTCTT+GGG | - | chr4_1:40667046-40667065 | Msa0547440:intron | 20.0% |
| !! | ATGAATACAAAGAAAACTAT+AGG | - | chr4_1:40667254-40667273 | Msa0547440:CDS | 20.0% |
| !! | AAAATATCAAATTACAAGAG+TGG | + | chr4_1:40667677-40667696 | None:intergenic | 20.0% |
| !!! | AAGATTTTTAAAGATTGTGT+AGG | + | chr4_1:40667811-40667830 | None:intergenic | 20.0% |
| !! | TGATTTATGATAGAGAATTA+TGG | - | chr4_1:40667913-40667932 | Msa0547440:intron | 20.0% |
| !!! | AATGATGATGGAAAAAAAAA+AGG | - | chr4_1:40668751-40668770 | Msa0547440:five_prime_UTR | 20.0% |
| !! | AAAAACATAAATAACTGTAC+TGG | + | chr4_1:40668829-40668848 | None:intergenic | 20.0% |
| !!! | ACCCTTTTTATTATTCAAAA+AGG | + | chr4_1:40668860-40668879 | None:intergenic | 20.0% |
| ! | TATATGATAAGATATCGGTA+TGG | + | chr4_1:40662041-40662060 | None:intergenic | 25.0% |
| ! | ATTCTTGTTCTAATCATCTT+TGG | + | chr4_1:40662115-40662134 | None:intergenic | 25.0% |
| !! | TCTTCTATTTTCTATCAACT+TGG | - | chr4_1:40662844-40662863 | Msa0547440:intron | 25.0% |
| !! | ATTGCATATCATGCTTTTAA+TGG | - | chr4_1:40662876-40662895 | Msa0547440:intron | 25.0% |
| !! | ATAATTTGTGTGATCAATGT+GGG | + | chr4_1:40662973-40662992 | None:intergenic | 25.0% |
| !! | AATAATTTGTGTGATCAATG+TGG | + | chr4_1:40662974-40662993 | None:intergenic | 25.0% |
| !! | TGGTATTATTTATCTTTTGC+CGG | + | chr4_1:40663095-40663114 | None:intergenic | 25.0% |
| ! | ACAAATTAGTCCATCTATTA+AGG | - | chr4_1:40663144-40663163 | Msa0547440:intron | 25.0% |
| ! | TACGATTAACATACTAACAT+CGG | - | chr4_1:40663217-40663236 | Msa0547440:intron | 25.0% |
| ! | GTCCTTCATATAAAAACATT+AGG | - | chr4_1:40663291-40663310 | Msa0547440:intron | 25.0% |
| ! | CCTTCATATAAAAACATTAG+GGG | - | chr4_1:40663293-40663312 | Msa0547440:intron | 25.0% |
| ! | AAATTAGTAAACACCCAATT+TGG | + | chr4_1:40663380-40663399 | None:intergenic | 25.0% |
| !!! | GTTGTGTTTTGATCTAATTT+AGG | - | chr4_1:40663456-40663475 | Msa0547440:intron | 25.0% |
| !! | TAATTTAGGATGTTAACTTG+TGG | - | chr4_1:40663470-40663489 | Msa0547440:intron | 25.0% |
| ! | GATTATATGTATGTGATTCT+AGG | + | chr4_1:40663642-40663661 | None:intergenic | 25.0% |
| ! | CATTGTCTCTTTAATACAAA+CGG | - | chr4_1:40663755-40663774 | Msa0547440:intron | 25.0% |
| !!! | ATTTTGGAATATTGATAACG+TGG | - | chr4_1:40663817-40663836 | Msa0547440:CDS | 25.0% |
| ! | TACAATTTCAAAGACCAAAT+TGG | - | chr4_1:40663861-40663880 | Msa0547440:intron | 25.0% |
| ! | AATTTGTGTAATACTGCAAA+AGG | + | chr4_1:40664136-40664155 | None:intergenic | 25.0% |
| ! | CAAATTGAATGATATGGAAT+AGG | - | chr4_1:40664150-40664169 | Msa0547440:CDS | 25.0% |
| !!! | CAATTTTTAAACTAGTCTTC+AGG | - | chr4_1:40664466-40664485 | Msa0547440:intron | 25.0% |
| !!! | AGTATTTTTGTTTCTGTTCA+TGG | + | chr4_1:40664530-40664549 | None:intergenic | 25.0% |
| ! | GAATTACACAACATTAAACT+AGG | + | chr4_1:40664579-40664598 | None:intergenic | 25.0% |
| !! | TATTTTCCAGCTATAAACTA+AGG | + | chr4_1:40665526-40665545 | None:intergenic | 25.0% |
| ! | GTAATAAAATGATTTATCGG+TGG | + | chr4_1:40665591-40665610 | None:intergenic | 25.0% |
| ! | AAAATAAGTGGAAGATTAAG+AGG | + | chr4_1:40666074-40666093 | None:intergenic | 25.0% |
| !!! | ATTTTGGAAAATTATGCAAC+TGG | + | chr4_1:40666396-40666415 | None:intergenic | 25.0% |
| ! | CCTGAACAAAAAGAAAATAA+TGG | + | chr4_1:40666524-40666543 | None:intergenic | 25.0% |
| !! | CCATTATTTTCTTTTTGTTC+AGG | - | chr4_1:40666521-40666540 | Msa0547440:intron | 25.0% |
| ! | TTTATACAGGTTCATTTCAT+CGG | - | chr4_1:40666689-40666708 | Msa0547440:intron | 25.0% |
| ! | AGATTCACATACAATACAAA+GGG | + | chr4_1:40666745-40666764 | None:intergenic | 25.0% |
| ! | AAGATTCACATACAATACAA+AGG | + | chr4_1:40666746-40666765 | None:intergenic | 25.0% |
| ! | AACAATAAGAAACAGATTTG+AGG | + | chr4_1:40666982-40667001 | None:intergenic | 25.0% |
| ! | GAAAATGTAAACATCATTCT+TGG | - | chr4_1:40667045-40667064 | Msa0547440:intron | 25.0% |
| ! | AAAAAAGAAGAATGGTAACA+AGG | - | chr4_1:40667446-40667465 | Msa0547440:intron | 25.0% |
| !!! | ATCAGACAATTTTGAGATTA+AGG | - | chr4_1:40667477-40667496 | Msa0547440:intron | 25.0% |
| !!! | AATTGCAATTTTGATAACAC+CGG | - | chr4_1:40667591-40667610 | Msa0547440:intron | 25.0% |
| ! | ATTAACTTTCATGATTTCGA+GGG | + | chr4_1:40667783-40667802 | None:intergenic | 25.0% |
| ! | TATTAACTTTCATGATTTCG+AGG | + | chr4_1:40667784-40667803 | None:intergenic | 25.0% |
| !!! | GGGATTTTAAAAGACTATTT+TGG | + | chr4_1:40667848-40667867 | None:intergenic | 25.0% |
| !!! | TTACAACTTTGTTTTTGTCA+TGG | - | chr4_1:40668158-40668177 | Msa0547440:intron | 25.0% |
| ! | TGAATAGTATGATGCAAAAA+AGG | + | chr4_1:40668323-40668342 | None:intergenic | 25.0% |
| !! | GGAATCTATTACATTACTTT+TGG | + | chr4_1:40668805-40668824 | None:intergenic | 25.0% |
| CTACTACTAATTTGAAGGAA+AGG | - | chr4_1:40661816-40661835 | Msa0547440:three_prime_UTR | 30.0% | |
| ! | GATTGTTGATTACTTAGCTT+GGG | + | chr4_1:40662081-40662100 | None:intergenic | 30.0% |
| ! | TGATTGTTGATTACTTAGCT+TGG | + | chr4_1:40662082-40662101 | None:intergenic | 30.0% |
| TCTGAAAAGAGTTGAGAAAA+TGG | + | chr4_1:40662152-40662171 | None:intergenic | 30.0% | |
| TAAGATGTTAGAGAAAGTAG+TGG | + | chr4_1:40662261-40662280 | None:intergenic | 30.0% | |
| !!! | GTCAATCTTATTTTTGACCA+AGG | + | chr4_1:40662483-40662502 | None:intergenic | 30.0% |
| TTGAAATTCAGTGACTTTCA+TGG | - | chr4_1:40662611-40662630 | Msa0547440:intron | 30.0% | |
| TTTCTCTTTCACTAAGGTTA+TGG | + | chr4_1:40662648-40662667 | None:intergenic | 30.0% | |
| GTATCATTTCTCTTTCACTA+AGG | + | chr4_1:40662654-40662673 | None:intergenic | 30.0% | |
| ! | CTATTTTCTATCAACTTGGT+TGG | - | chr4_1:40662848-40662867 | Msa0547440:intron | 30.0% |
| TCACACAAATTATTTCCCAA+AGG | - | chr4_1:40662980-40662999 | Msa0547440:intron | 30.0% | |
| ! | GTATTATTTATCTTTTGCCG+GGG | + | chr4_1:40663093-40663112 | None:intergenic | 30.0% |
| ! | GGTATTATTTATCTTTTGCC+GGG | + | chr4_1:40663094-40663113 | None:intergenic | 30.0% |
| !!! | AGTCTCTGTCATTTTCAAAT+TGG | - | chr4_1:40663119-40663138 | Msa0547440:intron | 30.0% |
| !!! | GTCTCTGTCATTTTCAAATT+GGG | - | chr4_1:40663120-40663139 | Msa0547440:intron | 30.0% |
| !!! | TCTCTGTCATTTTCAAATTG+GGG | - | chr4_1:40663121-40663140 | Msa0547440:intron | 30.0% |
| TCCATCTATTAAGGAGTTAA+AGG | - | chr4_1:40663153-40663172 | Msa0547440:intron | 30.0% | |
| CCATCTATTAAGGAGTTAAA+GGG | - | chr4_1:40663154-40663173 | Msa0547440:intron | 30.0% | |
| GGATCATTCATTATAACAGA+AGG | + | chr4_1:40663259-40663278 | None:intergenic | 30.0% | |
| TCTGTTATAATGAATGATCC+AGG | - | chr4_1:40663259-40663278 | Msa0547440:intron | 30.0% | |
| CTGTTATAATGAATGATCCA+GGG | - | chr4_1:40663260-40663279 | Msa0547440:intron | 30.0% | |
| !! | CCCCTAATGTTTTTATATGA+AGG | + | chr4_1:40663296-40663315 | None:intergenic | 30.0% |
| AAAACATTAGGGGATTAACT+TGG | - | chr4_1:40663303-40663322 | Msa0547440:intron | 30.0% | |
| AAACATTAGGGGATTAACTT+GGG | - | chr4_1:40663304-40663323 | Msa0547440:intron | 30.0% | |
| !! | TGTTAACTTGTGGAAAAGTA+TGG | - | chr4_1:40663480-40663499 | Msa0547440:intron | 30.0% |
| !! | GTTAACTTGTGGAAAAGTAT+GGG | - | chr4_1:40663481-40663500 | Msa0547440:intron | 30.0% |
| TGATAACATATCCAAACAGA+AGG | + | chr4_1:40663673-40663692 | None:intergenic | 30.0% | |
| AAGAGACAATGACATTATGT+TGG | + | chr4_1:40663746-40663765 | None:intergenic | 30.0% | |
| !! | ATATTGATAACGTGGATGAT+TGG | - | chr4_1:40663825-40663844 | Msa0547440:CDS | 30.0% |
| !! | TATTGATAACGTGGATGATT+GGG | - | chr4_1:40663826-40663845 | Msa0547440:CDS | 30.0% |
| GAGTAACTAACTATCCAATT+TGG | + | chr4_1:40663878-40663897 | None:intergenic | 30.0% | |
| GTTAGTTACTCTACTTTACT+TGG | - | chr4_1:40663887-40663906 | Msa0547440:intron | 30.0% | |
| TTACTCTACTTTACTTGGTT+TGG | - | chr4_1:40663892-40663911 | Msa0547440:intron | 30.0% | |
| AGAATGTAGATACTATTTGC+AGG | - | chr4_1:40664071-40664090 | Msa0547440:intron | 30.0% | |
| ATTTCAAATCGTCCTTCTTT+AGG | - | chr4_1:40664180-40664199 | Msa0547440:CDS | 30.0% | |
| CAAATAAGCAGACATAGAAT+TGG | + | chr4_1:40664281-40664300 | None:intergenic | 30.0% | |
| CTTGTATCATTGTATAGCAA+TGG | - | chr4_1:40664332-40664351 | Msa0547440:intron | 30.0% | |
| !!! | TTTTTTGTTTAGGTGAGGAA+TGG | - | chr4_1:40664501-40664520 | Msa0547440:intron | 30.0% |
| GAAACAAAAATACTTGCCAA+AGG | - | chr4_1:40664536-40664555 | Msa0547440:intron | 30.0% | |
| ! | CAACTAGTTATGAGCATTTT+TGG | + | chr4_1:40664670-40664689 | None:intergenic | 30.0% |
| AAAGGAGTTGAAGGAATTAA+AGG | - | chr4_1:40664736-40664755 | Msa0547440:intron | 30.0% | |
| CTATTAATGAGCACAAGAAA+TGG | + | chr4_1:40664856-40664875 | None:intergenic | 30.0% | |
| CTTAACTGTAGACAAACAAA+TGG | + | chr4_1:40664900-40664919 | None:intergenic | 30.0% | |
| GCAGAAAAGACAAATTTACT+AGG | + | chr4_1:40665066-40665085 | None:intergenic | 30.0% | |
| AAAACCGGATGTAATAATGT+AGG | - | chr4_1:40665278-40665297 | Msa0547440:intron | 30.0% | |
| TATGCCTACATTATTACATC+CGG | + | chr4_1:40665285-40665304 | None:intergenic | 30.0% | |
| !! | TATCACAAAACTTGTTGTCA+AGG | + | chr4_1:40665452-40665471 | None:intergenic | 30.0% |
| TTGATTCCTTAGTTTATAGC+TGG | - | chr4_1:40665517-40665536 | Msa0547440:intron | 30.0% | |
| TAAAATCAAGTGGTTGGAAA+TGG | + | chr4_1:40665762-40665781 | None:intergenic | 30.0% | |
| ATCTTGTCAGTAAAATCAAG+TGG | + | chr4_1:40665772-40665791 | None:intergenic | 30.0% | |
| ! | ACTGACAAGATAGAATTTTG+TGG | - | chr4_1:40665781-40665800 | Msa0547440:CDS | 30.0% |
| ! | CTGACAAGATAGAATTTTGT+GGG | - | chr4_1:40665782-40665801 | Msa0547440:CDS | 30.0% |
| AAAATGTTCTTGGGAAAGAA+GGG | - | chr4_1:40665846-40665865 | Msa0547440:intron | 30.0% | |
| ! | TAAGAGAGTAATTTTGCATC+TGG | - | chr4_1:40666004-40666023 | Msa0547440:intron | 30.0% |
| ! | AAATAAACCCTTAATTTGGG+AGG | + | chr4_1:40666119-40666138 | None:intergenic | 30.0% |
| ! | ATAGTCTCACAACAAACTTT+TGG | + | chr4_1:40666163-40666182 | None:intergenic | 30.0% |
| ! | ATGTGTCAATCTAGTGATTT+TGG | + | chr4_1:40666412-40666431 | None:intergenic | 30.0% |
| ! | TTCATTGTCAATTGACCTTT+TGG | - | chr4_1:40666768-40666787 | Msa0547440:intron | 30.0% |
| ATACATCTTTACAGTCTTCA+CGG | - | chr4_1:40666816-40666835 | Msa0547440:intron | 30.0% | |
| TCGATAATGTTCTTCATTTC+AGG | - | chr4_1:40666896-40666915 | Msa0547440:intron | 30.0% | |
| AATAAGAAACAGATTTGAGG+AGG | + | chr4_1:40666979-40666998 | None:intergenic | 30.0% | |
| TCTTTCCCTATTATTAGACA+AGG | - | chr4_1:40667102-40667121 | Msa0547440:intron | 30.0% | |
| CCTAACCTTGTCTAATAATA+GGG | + | chr4_1:40667110-40667129 | None:intergenic | 30.0% | |
| TCCTAACCTTGTCTAATAAT+AGG | + | chr4_1:40667111-40667130 | None:intergenic | 30.0% | |
| CTTCTTAGTATGGAATCAAA+AGG | + | chr4_1:40667195-40667214 | None:intergenic | 30.0% | |
| !! | GAATGAATGTTTTCAAGATC+AGG | - | chr4_1:40667279-40667298 | Msa0547440:CDS | 30.0% |
| ! | AGGGTATCATGATCATAAAA+AGG | - | chr4_1:40667323-40667342 | Msa0547440:intron | 30.0% |
| ! | TCCCAATTCTAGGTAATTTT+CGG | + | chr4_1:40667364-40667383 | None:intergenic | 30.0% |
| AAAATTACCTAGAATTGGGA+GGG | - | chr4_1:40667364-40667383 | Msa0547440:intron | 30.0% | |
| TAAAACGTAGAATCGTAACA+AGG | - | chr4_1:40667400-40667419 | Msa0547440:intron | 30.0% | |
| !!! | CAATTTTGAGATTAAGGTAC+CGG | - | chr4_1:40667483-40667502 | Msa0547440:intron | 30.0% |
| TAAAAGACTGCAATTGAAAC+CGG | + | chr4_1:40667505-40667524 | None:intergenic | 30.0% | |
| !! | ATTGCAATTTTGATAACACC+GGG | - | chr4_1:40667592-40667611 | Msa0547440:intron | 30.0% |
| TCTTTCTTAATAATTCTCCC+CGG | + | chr4_1:40667613-40667632 | None:intergenic | 30.0% | |
| ! | TTTTTGTGTTTTTCCCCTTT+CGG | - | chr4_1:40668057-40668076 | Msa0547440:intron | 30.0% |
| TTGTGTTACATCATGCAAAT+TGG | + | chr4_1:40668104-40668123 | None:intergenic | 30.0% | |
| TTGGCTCATTATAATTCTAG+TGG | - | chr4_1:40668261-40668280 | Msa0547440:intron | 30.0% | |
| TGGCTCATTATAATTCTAGT+GGG | - | chr4_1:40668262-40668281 | Msa0547440:intron | 30.0% | |
| AAATAGTAGAGTTGTTGCAT+TGG | + | chr4_1:40668299-40668318 | None:intergenic | 30.0% | |
| ATACAATGTTTAGGTGGAAA+CGG | - | chr4_1:40668438-40668457 | Msa0547440:intron | 30.0% | |
| GAGATCAGAAGAATGATTAT+TGG | - | chr4_1:40668534-40668553 | Msa0547440:CDS | 30.0% | |
| AAGCACATACAGATCTAATA+TGG | + | chr4_1:40668688-40668707 | None:intergenic | 30.0% | |
| GATGGAAAAAAAAAAGGTTC+AGG | - | chr4_1:40668757-40668776 | Msa0547440:five_prime_UTR | 30.0% | |
| ! | AGGTCTGAGATTCAATAATT+TGG | - | chr4_1:40668777-40668796 | Msa0547440:five_prime_UTR | 30.0% |
| AACATAAATAACTGTACTGG+AGG | + | chr4_1:40668826-40668845 | None:intergenic | 30.0% | |
| TAGCTGAATCAGATAGTAGT+AGG | + | chr4_1:40661863-40661882 | None:intergenic | 35.0% | |
| GTTCTAATCATCTTTGGCAA+CGG | + | chr4_1:40662109-40662128 | None:intergenic | 35.0% | |
| TGAGTTAAGTCTTACGAACT+GGG | + | chr4_1:40662511-40662530 | None:intergenic | 35.0% | |
| TTGAGTTAAGTCTTACGAAC+TGG | + | chr4_1:40662512-40662531 | None:intergenic | 35.0% | |
| TTCGTAAGACTTAACTCAAC+TGG | - | chr4_1:40662513-40662532 | Msa0547440:intron | 35.0% | |
| AGACTTAACTCAACTGGTTA+AGG | - | chr4_1:40662519-40662538 | Msa0547440:intron | 35.0% | |
| ATCGAGATCCACTACATTTA+AGG | + | chr4_1:40662719-40662738 | None:intergenic | 35.0% | |
| ! | GAAAATGACAGAGACTAGTT+TGG | + | chr4_1:40663115-40663134 | None:intergenic | 35.0% |
| CCCTTTAACTCCTTAATAGA+TGG | + | chr4_1:40663157-40663176 | None:intergenic | 35.0% | |
| ! | TAGTATTTTTCTCCCTTGTC+TGG | + | chr4_1:40663193-40663212 | None:intergenic | 35.0% |
| AAAGTTGTGAGAGACCAAAT+TGG | - | chr4_1:40663363-40663382 | Msa0547440:intron | 35.0% | |
| AAGTTGTGAGAGACCAAATT+GGG | - | chr4_1:40663364-40663383 | Msa0547440:intron | 35.0% | |
| CATAGTGTAACTGAATATGC+TGG | - | chr4_1:40663434-40663453 | Msa0547440:intron | 35.0% | |
| ATGGGAGAATTTAATCTCCA+TGG | - | chr4_1:40663499-40663518 | Msa0547440:intron | 35.0% | |
| TGGGAGAATTTAATCTCCAT+GGG | - | chr4_1:40663500-40663519 | Msa0547440:intron | 35.0% | |
| ATCAAGTTCATCCTTCTGTT+TGG | - | chr4_1:40663659-40663678 | Msa0547440:intron | 35.0% | |
| ACATTATGTTGGCAATGCAT+AGG | + | chr4_1:40663735-40663754 | None:intergenic | 35.0% | |
| CACTATCTCATAGAGTATAC+AGG | + | chr4_1:40664001-40664020 | None:intergenic | 35.0% | |
| ! | TAAATCAGAGCACCTAAAGA+AGG | + | chr4_1:40664195-40664214 | None:intergenic | 35.0% |
| TAACCTATGTATCAATCAGC+TGG | - | chr4_1:40664407-40664426 | Msa0547440:intron | 35.0% | |
| TTACCAGCTGATTGATACAT+AGG | + | chr4_1:40664413-40664432 | None:intergenic | 35.0% | |
| ATCAATCAGCTGGTAATTGA+AGG | - | chr4_1:40664417-40664436 | Msa0547440:intron | 35.0% | |
| TCAATCAGCTGGTAATTGAA+GGG | - | chr4_1:40664418-40664437 | Msa0547440:intron | 35.0% | |
| !!! | TGCTGCCTTCTTTTTTGTTT+AGG | - | chr4_1:40664491-40664510 | Msa0547440:intron | 35.0% |
| CCTCACCTAAACAAAAAAGA+AGG | + | chr4_1:40664499-40664518 | None:intergenic | 35.0% | |
| !!! | CCTTCTTTTTTGTTTAGGTG+AGG | - | chr4_1:40664496-40664515 | Msa0547440:intron | 35.0% |
| CATTGCACATATCAGCAATA+GGG | + | chr4_1:40664634-40664653 | None:intergenic | 35.0% | |
| ACATTGCACATATCAGCAAT+AGG | + | chr4_1:40664635-40664654 | None:intergenic | 35.0% | |
| CATAACTAGTTGTAGCTTTC+AGG | - | chr4_1:40664678-40664697 | Msa0547440:intron | 35.0% | |
| AATGAGCACAAGAAATGGTT+GGG | + | chr4_1:40664851-40664870 | None:intergenic | 35.0% | |
| TAATGAGCACAAGAAATGGT+TGG | + | chr4_1:40664852-40664871 | None:intergenic | 35.0% | |
| !! | TCAACTTTGAAGCTTATCTC+TGG | - | chr4_1:40664944-40664963 | Msa0547440:CDS | 35.0% |
| !! | CAACTTTGAAGCTTATCTCT+GGG | - | chr4_1:40664945-40664964 | Msa0547440:CDS | 35.0% |
| !! | AACTTTGAAGCTTATCTCTG+GGG | - | chr4_1:40664946-40664965 | Msa0547440:CDS | 35.0% |
| AATTTACTAGGCTAAGTCCT+TGG | + | chr4_1:40665054-40665073 | None:intergenic | 35.0% | |
| ! | AAATTTGTCTTTTCTGCAGC+TGG | - | chr4_1:40665069-40665088 | Msa0547440:CDS | 35.0% |
| AACAAGATGTGGTGTACTAA+TGG | - | chr4_1:40665156-40665175 | Msa0547440:intron | 35.0% | |
| ACAAGATGTGGTGTACTAAT+GGG | - | chr4_1:40665157-40665176 | Msa0547440:intron | 35.0% | |
| CATACTAATGTTTGAGCAGT+TGG | + | chr4_1:40665183-40665202 | None:intergenic | 35.0% | |
| AAACATGCTTAGCATGGAAA+TGG | + | chr4_1:40665238-40665257 | None:intergenic | 35.0% | |
| TGATTGTGTTGAATTGCATC+AGG | - | chr4_1:40665336-40665355 | Msa0547440:intron | 35.0% | |
| ACTGCATTTATCATCGAGAA+GGG | - | chr4_1:40665403-40665422 | Msa0547440:intron | 35.0% | |
| AGCTGGAAAATATCCTTCTA+TGG | - | chr4_1:40665534-40665553 | Msa0547440:intron | 35.0% | |
| TTCAAGTACACTTCCATAGA+AGG | + | chr4_1:40665550-40665569 | None:intergenic | 35.0% | |
| ! | GACAAACATCATTGATTGTC+AGG | + | chr4_1:40665644-40665663 | None:intergenic | 35.0% |
| CCCTAGTTTATCCAATTTCT+GGG | + | chr4_1:40665683-40665702 | None:intergenic | 35.0% | |
| CCCAGAAATTGGATAAACTA+GGG | - | chr4_1:40665680-40665699 | Msa0547440:intron | 35.0% | |
| TCCCTAGTTTATCCAATTTC+TGG | + | chr4_1:40665684-40665703 | None:intergenic | 35.0% | |
| TGTCAGTAAAATCAAGTGGT+TGG | + | chr4_1:40665768-40665787 | None:intergenic | 35.0% | |
| GAAAATGTTCTTGGGAAAGA+AGG | - | chr4_1:40665845-40665864 | Msa0547440:intron | 35.0% | |
| !! | ATTATTTGGTAGTGCTCGTT+TGG | - | chr4_1:40665927-40665946 | Msa0547440:intron | 35.0% |
| ! | ACTCTTTTCCTCCCAAATTA+AGG | - | chr4_1:40666108-40666127 | Msa0547440:intron | 35.0% |
| ! | CTCTTTTCCTCCCAAATTAA+GGG | - | chr4_1:40666109-40666128 | Msa0547440:intron | 35.0% |
| ACTAAGAACGTAAGGACATT+TGG | - | chr4_1:40666296-40666315 | Msa0547440:intron | 35.0% | |
| GGAAAATTATGCAACTGGAA+AGG | + | chr4_1:40666391-40666410 | None:intergenic | 35.0% | |
| !! | AAAACCACTTTTGCTTTGTC+AGG | - | chr4_1:40666476-40666495 | Msa0547440:intron | 35.0% |
| ACATGACTGCATAATACCAA+GGG | + | chr4_1:40666603-40666622 | None:intergenic | 35.0% | |
| ATAAACTGAAACTCCCCAAT+AGG | + | chr4_1:40666674-40666693 | None:intergenic | 35.0% | |
| !! | TCCTGCTAAATTAGTTTGCA+CGG | - | chr4_1:40666870-40666889 | Msa0547440:intron | 35.0% |
| CTTATGTGTATTCTGTAGCT+CGG | - | chr4_1:40666920-40666939 | Msa0547440:intron | 35.0% | |
| TTATGTGTATTCTGTAGCTC+GGG | - | chr4_1:40666921-40666940 | Msa0547440:intron | 35.0% | |
| CCCTATTATTAGACAAGGTT+AGG | - | chr4_1:40667107-40667126 | Msa0547440:intron | 35.0% | |
| ATGATAGCATTAGAGAGAGT+TGG | - | chr4_1:40667131-40667150 | Msa0547440:intron | 35.0% | |
| !! | AGTTGGTAGTAGCACAAATT+AGG | - | chr4_1:40667148-40667167 | Msa0547440:intron | 35.0% |
| !! | GTTGGTAGTAGCACAAATTA+GGG | - | chr4_1:40667149-40667168 | Msa0547440:intron | 35.0% |
| CTGATCTACTCTTCTTAGTA+TGG | + | chr4_1:40667205-40667224 | None:intergenic | 35.0% | |
| ACTAAGAAGAGTAGATCAGA+TGG | - | chr4_1:40667206-40667225 | Msa0547440:intron | 35.0% | |
| !!! | ATTCTAGGTAATTTTCGGGT+AGG | + | chr4_1:40667359-40667378 | None:intergenic | 35.0% |
| ACCCGAAAATTACCTAGAAT+TGG | - | chr4_1:40667359-40667378 | Msa0547440:intron | 35.0% | |
| ! | CCCAATTCTAGGTAATTTTC+GGG | + | chr4_1:40667363-40667382 | None:intergenic | 35.0% |
| CCCGAAAATTACCTAGAATT+GGG | - | chr4_1:40667360-40667379 | Msa0547440:intron | 35.0% | |
| GAAAATTACCTAGAATTGGG+AGG | - | chr4_1:40667363-40667382 | Msa0547440:intron | 35.0% | |
| AAATTACCTAGAATTGGGAG+GGG | - | chr4_1:40667365-40667384 | Msa0547440:intron | 35.0% | |
| ! | CGTAAAATCGTGCGATTTTA+CGG | - | chr4_1:40667564-40667583 | Msa0547440:intron | 35.0% |
| !! | TTGCAATTTTGATAACACCG+GGG | - | chr4_1:40667593-40667612 | Msa0547440:intron | 35.0% |
| !! | AAACCATTGATTTCTAAGGG+GGG | + | chr4_1:40667882-40667901 | None:intergenic | 35.0% |
| !! | CAAACCATTGATTTCTAAGG+GGG | + | chr4_1:40667883-40667902 | None:intergenic | 35.0% |
| !! | CCAAACCATTGATTTCTAAG+GGG | + | chr4_1:40667884-40667903 | None:intergenic | 35.0% |
| !! | GCCAAACCATTGATTTCTAA+GGG | + | chr4_1:40667885-40667904 | None:intergenic | 35.0% |
| !! | AGCCAAACCATTGATTTCTA+AGG | + | chr4_1:40667886-40667905 | None:intergenic | 35.0% |
| CACGCAATGCATAAGAAATA+TGG | + | chr4_1:40668013-40668032 | None:intergenic | 35.0% | |
| ACAAAATCAACAAGCCGAAA+GGG | + | chr4_1:40668074-40668093 | None:intergenic | 35.0% | |
| AACAAAATCAACAAGCCGAA+AGG | + | chr4_1:40668075-40668094 | None:intergenic | 35.0% | |
| !!! | CGGCTTGTTGATTTTGTTTT+TGG | - | chr4_1:40668077-40668096 | Msa0547440:intron | 35.0% |
| ATAATGAGCCAACATGATCT+TGG | + | chr4_1:40668253-40668272 | None:intergenic | 35.0% | |
| !! | TTATAATTCTAGTGGGCTAG+TGG | - | chr4_1:40668269-40668288 | Msa0547440:intron | 35.0% |
| ! | TCTCATGTGCTACTAATTTC+AGG | - | chr4_1:40668356-40668375 | Msa0547440:intron | 35.0% |
| TACTAATTTCAGGATTGTGC+TGG | - | chr4_1:40668366-40668385 | Msa0547440:intron | 35.0% | |
| TTGAAGCAAATCATTCCTCT+TGG | - | chr4_1:40668726-40668745 | Msa0547440:five_prime_UTR | 35.0% | |
| TTCCTCTTGGAAAATGATGA+TGG | - | chr4_1:40668739-40668758 | Msa0547440:five_prime_UTR | 35.0% | |
| ! | TTCCATCATCATTTTCCAAG+AGG | + | chr4_1:40668744-40668763 | None:intergenic | 35.0% |
| TACAGTACCAACAATAGGTA+AGG | + | chr4_1:40668906-40668925 | None:intergenic | 35.0% | |
| ACCTATTGTTGGTACTGTAT+TGG | - | chr4_1:40668907-40668926 | Msa0547440:five_prime_UTR | 35.0% | |
| TCCAATACAGTACCAACAAT+AGG | + | chr4_1:40668911-40668930 | None:intergenic | 35.0% | |
| CAGCGCTACTACTAATTTGA+AGG | - | chr4_1:40661811-40661830 | Msa0547440:three_prime_UTR | 40.0% | |
| !!! | GTGTTTTGGCAGTTGAGATA+AGG | + | chr4_1:40661914-40661933 | None:intergenic | 40.0% |
| ! | ATGGAATGGGTGTAGTGTTT+TGG | + | chr4_1:40661928-40661947 | None:intergenic | 40.0% |
| ! | TGATTACTTAGCTTGGGTGT+TGG | + | chr4_1:40662075-40662094 | None:intergenic | 40.0% |
| ATCGAAGAGGAATGAAGTAG+TGG | + | chr4_1:40662218-40662237 | None:intergenic | 40.0% | |
| GAGTTAAGTCTTACGAACTG+GGG | + | chr4_1:40662510-40662529 | None:intergenic | 40.0% | |
| TGGTTAAGGATCGTCAAAGT+TGG | - | chr4_1:40662533-40662552 | Msa0547440:intron | 40.0% | |
| ATCCTTAACCAGTTCGAACT+CGG | + | chr4_1:40662569-40662588 | None:intergenic | 40.0% | |
| AATTCAGTGACTTTCATGGC+AGG | - | chr4_1:40662615-40662634 | Msa0547440:intron | 40.0% | |
| ! | AGATCCACTACATTTAAGGC+GGG | + | chr4_1:40662715-40662734 | None:intergenic | 40.0% |
| GAGATCCACTACATTTAAGG+CGG | + | chr4_1:40662716-40662735 | None:intergenic | 40.0% | |
| ! | TTTTGAGCGAACACCCAATT+TGG | - | chr4_1:40663035-40663054 | Msa0547440:intron | 40.0% |
| AAACTGTCAGGGACCAAATT+GGG | + | chr4_1:40663051-40663070 | None:intergenic | 40.0% | |
| AAAACTGTCAGGGACCAAAT+TGG | + | chr4_1:40663052-40663071 | None:intergenic | 40.0% | |
| ATTAAGGAGTTAAAGGGCCA+AGG | - | chr4_1:40663160-40663179 | Msa0547440:intron | 40.0% | |
| CAAGGTTCAAATCCAGACAA+GGG | - | chr4_1:40663178-40663197 | Msa0547440:intron | 40.0% | |
| ATGAAGGACAAATTAGTCCC+TGG | + | chr4_1:40663280-40663299 | None:intergenic | 40.0% | |
| CTACAATTCCATGACCAACA+TGG | + | chr4_1:40663571-40663590 | None:intergenic | 40.0% | |
| CATGTTGGTCATGGAATTGT+AGG | - | chr4_1:40663569-40663588 | Msa0547440:intron | 40.0% | |
| TACAGAAAATACGGGAGACT+TGG | + | chr4_1:40663606-40663625 | None:intergenic | 40.0% | |
| CTATGTCTGCTTATTTGCAG+AGG | - | chr4_1:40664284-40664303 | Msa0547440:intron | 40.0% | |
| TGCTTATTTGCAGAGGAGTA+TGG | - | chr4_1:40664291-40664310 | Msa0547440:intron | 40.0% | |
| ! | TTATTTGCAGAGGAGTATGG+AGG | - | chr4_1:40664294-40664313 | Msa0547440:intron | 40.0% |
| ! | TATTTGCAGAGGAGTATGGA+GGG | - | chr4_1:40664295-40664314 | Msa0547440:intron | 40.0% |
| !! | GGATCTGTTGGTCTTTCTTA+TGG | - | chr4_1:40664375-40664394 | Msa0547440:intron | 40.0% |
| !! | AAACTAGAGTGTCGAACCTT+TGG | + | chr4_1:40664555-40664574 | None:intergenic | 40.0% |
| AACTAGTTGTAGCTTTCAGG+TGG | - | chr4_1:40664681-40664700 | Msa0547440:intron | 40.0% | |
| !! | AGCTCAATTGGTTTGAGCTA+AGG | - | chr4_1:40664710-40664729 | Msa0547440:intron | 40.0% |
| !! | GCTCAATTGGTTTGAGCTAA+GGG | - | chr4_1:40664711-40664730 | Msa0547440:intron | 40.0% |
| TGGTTTGAGCTAAGGGTTAA+AGG | - | chr4_1:40664718-40664737 | Msa0547440:intron | 40.0% | |
| CTAAGGGTTAAAGGAGTTGA+AGG | - | chr4_1:40664727-40664746 | Msa0547440:intron | 40.0% | |
| AAGGACTAGATTTCAAACCC+TGG | - | chr4_1:40664755-40664774 | Msa0547440:intron | 40.0% | |
| TAGATTTCAAACCCTGGTGA+AGG | - | chr4_1:40664761-40664780 | Msa0547440:intron | 40.0% | |
| ! | CAGTATTTTCTCCTTCACCA+GGG | + | chr4_1:40664775-40664794 | None:intergenic | 40.0% |
| ! | TCAGTATTTTCTCCTTCACC+AGG | + | chr4_1:40664776-40664795 | None:intergenic | 40.0% |
| GATGGGGGATATGTACTTAA+CGG | - | chr4_1:40665132-40665151 | Msa0547440:intron | 40.0% | |
| ATGGGGGATATGTACTTAAC+GGG | - | chr4_1:40665133-40665152 | Msa0547440:intron | 40.0% | |
| TACTTAACGGGAACAAGATG+TGG | - | chr4_1:40665145-40665164 | Msa0547440:intron | 40.0% | |
| CACTGCATTTATCATCGAGA+AGG | - | chr4_1:40665402-40665421 | Msa0547440:intron | 40.0% | |
| AAGGTTCAGTACAATTACCC+AGG | + | chr4_1:40665433-40665452 | None:intergenic | 40.0% | |
| ATTCAGTACTGCCCAGAAAT+TGG | - | chr4_1:40665669-40665688 | Msa0547440:CDS | 40.0% | |
| GCCCAGAAATTGGATAAACT+AGG | - | chr4_1:40665679-40665698 | Msa0547440:intron | 40.0% | |
| ! | CTTCGAGAATTGCTTTGTTC+CGG | - | chr4_1:40665820-40665839 | Msa0547440:intron | 40.0% |
| TTCCGGAGGAAAATGTTCTT+GGG | - | chr4_1:40665837-40665856 | Msa0547440:intron | 40.0% | |
| ! | TTCCCAAGAACATTTTCCTC+CGG | + | chr4_1:40665842-40665861 | None:intergenic | 40.0% |
| AAGCTGATATGATGCAAGAG+AGG | + | chr4_1:40666206-40666225 | None:intergenic | 40.0% | |
| GAGTCTATGTCATGATGTCT+GGG | - | chr4_1:40666543-40666562 | Msa0547440:intron | 40.0% | |
| CATGACTGCATAATACCAAG+GGG | + | chr4_1:40666602-40666621 | None:intergenic | 40.0% | |
| GACATGACTGCATAATACCA+AGG | + | chr4_1:40666604-40666623 | None:intergenic | 40.0% | |
| CTCTTTGTCGAACATAAGGA+AGG | + | chr4_1:40666637-40666656 | None:intergenic | 40.0% | |
| TGCTCTCTTTGTCGAACATA+AGG | + | chr4_1:40666641-40666660 | None:intergenic | 40.0% | |
| TGGGGAGTTTCAGTTTATAC+AGG | - | chr4_1:40666676-40666695 | Msa0547440:intron | 40.0% | |
| GGTATGAGATTCTAATGCCA+TGG | - | chr4_1:40666837-40666856 | Msa0547440:intron | 40.0% | |
| GTAGCACAAATTAGGGAGTT+TGG | - | chr4_1:40667156-40667175 | Msa0547440:intron | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | - | chr4_1:40667209-40667228 | Msa0547440:intron | 40.0% | |
| AGAAGAGTAGATCAGATGGA+GGG | - | chr4_1:40667210-40667229 | Msa0547440:intron | 40.0% | |
| TCAAGATCAGGATCTTGCTT+AGG | - | chr4_1:40667291-40667310 | Msa0547440:intron | 40.0% | |
| ATCAGGATCTTGCTTAGGAT+TGG | - | chr4_1:40667296-40667315 | Msa0547440:intron | 40.0% | |
| AATTACCTAGAATTGGGAGG+GGG | - | chr4_1:40667366-40667385 | Msa0547440:intron | 40.0% | |
| AAACGATCTTACTCGTTCCA+TGG | - | chr4_1:40667532-40667551 | Msa0547440:intron | 40.0% | |
| AACGATCTTACTCGTTCCAT+GGG | - | chr4_1:40667533-40667552 | Msa0547440:intron | 40.0% | |
| CCCCTTAGAAATCAATGGTT+TGG | - | chr4_1:40667881-40667900 | Msa0547440:intron | 40.0% | |
| CAAAATCAACAAGCCGAAAG+GGG | + | chr4_1:40668073-40668092 | None:intergenic | 40.0% | |
| AACACAAGTACAGTGTGTAG+TGG | - | chr4_1:40668117-40668136 | Msa0547440:intron | 40.0% | |
| AACTTGAGCCAAGATCATGT+TGG | - | chr4_1:40668242-40668261 | Msa0547440:intron | 40.0% | |
| TTGCAGGCGATACAATGTTT+AGG | - | chr4_1:40668429-40668448 | Msa0547440:intron | 40.0% | |
| TATGTGAACGAGTATCCAAC+CGG | - | chr4_1:40668462-40668481 | Msa0547440:intron | 40.0% | |
| TCTTCTGATCTCACTTGTTC+CGG | + | chr4_1:40668526-40668545 | None:intergenic | 40.0% | |
| TATTGGACGTGATCTCTTCA+AGG | - | chr4_1:40668551-40668570 | Msa0547440:CDS | 40.0% | |
| !! | TTTTCCCCTTGGATTTTGAC+TGG | - | chr4_1:40668587-40668606 | Msa0547440:CDS | 40.0% |
| AGTTCCAGTCAAAATCCAAG+GGG | + | chr4_1:40668594-40668613 | None:intergenic | 40.0% | |
| CAGTTCCAGTCAAAATCCAA+GGG | + | chr4_1:40668595-40668614 | None:intergenic | 40.0% | |
| TCAGTTCCAGTCAAAATCCA+AGG | + | chr4_1:40668596-40668615 | None:intergenic | 40.0% | |
| TTACAAAGGAATCATCTCCG+AGG | + | chr4_1:40668622-40668641 | None:intergenic | 40.0% | |
| GGCAGTTGAGATAAGGATGA+AGG | + | chr4_1:40661907-40661926 | None:intergenic | 45.0% | |
| GTATCTGAGTGTCATCGAAG+AGG | + | chr4_1:40662231-40662250 | None:intergenic | 45.0% | |
| CTTCGATGACACTCAGATAC+AGG | - | chr4_1:40662231-40662250 | Msa0547440:CDS | 45.0% | |
| TAAGTCTTACGAACTGGGGT+GGG | + | chr4_1:40662506-40662525 | None:intergenic | 45.0% | |
| TTAAGTCTTACGAACTGGGG+TGG | + | chr4_1:40662507-40662526 | None:intergenic | 45.0% | |
| ATCCGAGTTCGAACTGGTTA+AGG | - | chr4_1:40662564-40662583 | Msa0547440:intron | 45.0% | |
| CTTTCCCGCCTTAAATGTAG+TGG | - | chr4_1:40662708-40662727 | Msa0547440:intron | 45.0% | |
| GTGGATCTCGATCTCAGTTT+CGG | - | chr4_1:40662727-40662746 | Msa0547440:intron | 45.0% | |
| ATCTCGATCTCAGTTTCGGA+TGG | - | chr4_1:40662731-40662750 | Msa0547440:intron | 45.0% | |
| ! | ATCAATGTGGGAAGCATGAG+GGG | + | chr4_1:40662961-40662980 | None:intergenic | 45.0% |
| ! | GATCAATGTGGGAAGCATGA+GGG | + | chr4_1:40662962-40662981 | None:intergenic | 45.0% |
| ! | TGATCAATGTGGGAAGCATG+AGG | + | chr4_1:40662963-40662982 | None:intergenic | 45.0% |
| CCTTGTCTGGATTTGAACCT+TGG | + | chr4_1:40663180-40663199 | None:intergenic | 45.0% | |
| CCAAGGTTCAAATCCAGACA+AGG | - | chr4_1:40663177-40663196 | Msa0547440:intron | 45.0% | |
| ATATCAGCAATAGGGCAAGG+CGG | + | chr4_1:40664626-40664645 | None:intergenic | 45.0% | |
| CACATATCAGCAATAGGGCA+AGG | + | chr4_1:40664629-40664648 | None:intergenic | 45.0% | |
| ! | AGTTGTAGCTTTCAGGTGGT+TGG | - | chr4_1:40664685-40664704 | Msa0547440:intron | 45.0% |
| ! | GTTGTAGCTTTCAGGTGGTT+GGG | - | chr4_1:40664686-40664705 | Msa0547440:intron | 45.0% |
| ! | CTTATCTCTGGGGATCATGT+GGG | - | chr4_1:40664956-40664975 | Msa0547440:intron | 45.0% |
| TGCTTAGCATGGAAATGGCA+TGG | + | chr4_1:40665233-40665252 | None:intergenic | 45.0% | |
| TGGGACAAACATGCTTAGCA+TGG | + | chr4_1:40665244-40665263 | None:intergenic | 45.0% | |
| CAAAAACAGACGCAACAGCA+GGG | - | chr4_1:40665368-40665387 | Msa0547440:CDS | 45.0% | |
| TTGGATAAACTAGGGATGCG+AGG | - | chr4_1:40665688-40665707 | Msa0547440:intron | 45.0% | |
| GTTCCGGAGGAAAATGTTCT+TGG | - | chr4_1:40665836-40665855 | Msa0547440:intron | 45.0% | |
| GTTCTTGGGAAAGAAGGGAA+AGG | - | chr4_1:40665851-40665870 | Msa0547440:intron | 45.0% | |
| TTCTTAGTGAGTGGCTGAGT+GGG | + | chr4_1:40666284-40666303 | None:intergenic | 45.0% | |
| AGCCACTCACTAAGAACGTA+AGG | - | chr4_1:40666288-40666307 | Msa0547440:intron | 45.0% | |
| GTCCTTACGTTCTTAGTGAG+TGG | + | chr4_1:40666293-40666312 | None:intergenic | 45.0% | |
| GACACCTGACAAAGCAAAAG+TGG | + | chr4_1:40666483-40666502 | None:intergenic | 45.0% | |
| GGAGTCTATGTCATGATGTC+TGG | - | chr4_1:40666542-40666561 | Msa0547440:intron | 45.0% | |
| !!! | GAAAGGCTTGTTTTAGCAGC+CGG | - | chr4_1:40666575-40666594 | Msa0547440:intron | 45.0% |
| GTTCGACAAAGAGAGCAGTT+CGG | - | chr4_1:40666644-40666663 | Msa0547440:intron | 45.0% | |
| AGCAGGAGAAAATAGCACCA+TGG | + | chr4_1:40666857-40666876 | None:intergenic | 45.0% | |
| GCCGTGCAAACTAATTTAGC+AGG | + | chr4_1:40666874-40666893 | None:intergenic | 45.0% | |
| CAACGGAAAAGTTGACCCAA+AGG | - | chr4_1:40666951-40666970 | Msa0547440:intron | 45.0% | |
| !! | AGATTTGAGGAGGCACCTTT+GGG | + | chr4_1:40666969-40666988 | None:intergenic | 45.0% |
| !! | TGGAGGGTATCCTAATCACT+AGG | - | chr4_1:40667226-40667245 | Msa0547440:intron | 45.0% |
| !! | GGAGGGTATCCTAATCACTA+GGG | - | chr4_1:40667227-40667246 | Msa0547440:intron | 45.0% |
| !! | GAGGGTATCCTAATCACTAG+GGG | - | chr4_1:40667228-40667247 | Msa0547440:intron | 45.0% |
| TTCATCAGCCCCTAGTGATT+AGG | + | chr4_1:40667239-40667258 | None:intergenic | 45.0% | |
| ! | TCTTGCTTAGGATTGGCAAG+AGG | - | chr4_1:40667303-40667322 | Msa0547440:intron | 45.0% |
| ! | CTTGCTTAGGATTGGCAAGA+GGG | - | chr4_1:40667304-40667323 | Msa0547440:intron | 45.0% |
| ! | TAAGGGGGGTGTATTGGATT+GGG | + | chr4_1:40667868-40667887 | None:intergenic | 45.0% |
| ! | GATTTCTAAGGGGGGTGTAT+TGG | + | chr4_1:40667874-40667893 | None:intergenic | 45.0% |
| ACACCCCCCTTAGAAATCAA+TGG | - | chr4_1:40667876-40667895 | Msa0547440:intron | 45.0% | |
| ACTAGGTGGAGTCAGATACA+TGG | + | chr4_1:40667950-40667969 | None:intergenic | 45.0% | |
| ATGTATCTGACTCCACCTAG+TGG | - | chr4_1:40667949-40667968 | Msa0547440:intron | 45.0% | |
| TGTATCTGACTCCACCTAGT+GGG | - | chr4_1:40667950-40667969 | Msa0547440:intron | 45.0% | |
| CAACCAAGATTTGTCCCACT+AGG | + | chr4_1:40667967-40667986 | None:intergenic | 45.0% | |
| GGGACAAATCTTGGTTGTTG+TGG | - | chr4_1:40667970-40667989 | Msa0547440:intron | 45.0% | |
| ! | AGCAACACAAGTTGCTTTGC+AGG | - | chr4_1:40668413-40668432 | Msa0547440:intron | 45.0% |
| CAGGCGATACAATGTTTAGG+TGG | - | chr4_1:40668432-40668451 | Msa0547440:intron | 45.0% | |
| ! | CAATGACATGCTTTTCCCCT+TGG | - | chr4_1:40668576-40668595 | Msa0547440:CDS | 45.0% |
| TGCAGTGCCTTACCTATTGT+TGG | - | chr4_1:40668896-40668915 | Msa0547440:five_prime_UTR | 45.0% | |
| AAGTCTTACGAACTGGGGTG+GGG | + | chr4_1:40662505-40662524 | None:intergenic | 50.0% | |
| ACCTTCATCCGAGTTCGAAC+TGG | - | chr4_1:40662558-40662577 | Msa0547440:intron | 50.0% | |
| ACCAGTTCGAACTCGGATGA+AGG | + | chr4_1:40662562-40662581 | None:intergenic | 50.0% | |
| GAGCAGCGAGAAAACTGTCA+GGG | + | chr4_1:40663062-40663081 | None:intergenic | 50.0% | |
| TGAGCAGCGAGAAAACTGTC+AGG | + | chr4_1:40663063-40663082 | None:intergenic | 50.0% | |
| TCGCTGCTCAATTTAGTCCC+CGG | - | chr4_1:40663073-40663092 | Msa0547440:intron | 50.0% | |
| GGTCTCTCACAACTTTCTCG+CGG | + | chr4_1:40663359-40663378 | None:intergenic | 50.0% | |
| TACCTGGTGCAGTAATCCCA+TGG | + | chr4_1:40663519-40663538 | None:intergenic | 50.0% | |
| CCAACATGGATGCTCACTCA+AGG | + | chr4_1:40663557-40663576 | None:intergenic | 50.0% | |
| CCTTGAGTGAGCATCCATGT+TGG | - | chr4_1:40663554-40663573 | Msa0547440:intron | 50.0% | |
| GTGAGCATCCATGTTGGTCA+TGG | - | chr4_1:40663560-40663579 | Msa0547440:intron | 50.0% | |
| ! | GAAGAGATTAGCCGAGCTTC+AGG | - | chr4_1:40664354-40664373 | Msa0547440:intron | 50.0% |
| GACCAACAGATCCTGAAGCT+CGG | + | chr4_1:40664368-40664387 | None:intergenic | 50.0% | |
| AGGTGGTTGGGTAGCTCAAT+TGG | - | chr4_1:40664698-40664717 | Msa0547440:intron | 50.0% | |
| ! | GCTTATCTCTGGGGATCATG+TGG | - | chr4_1:40664955-40664974 | Msa0547440:intron | 50.0% |
| TGCAAAGCTGATCGCGTAGA+TGG | - | chr4_1:40665114-40665133 | Msa0547440:intron | 50.0% | |
| GCAAAGCTGATCGCGTAGAT+GGG | - | chr4_1:40665115-40665134 | Msa0547440:intron | 50.0% | |
| CAAAGCTGATCGCGTAGATG+GGG | - | chr4_1:40665116-40665135 | Msa0547440:intron | 50.0% | |
| AAAGCTGATCGCGTAGATGG+GGG | - | chr4_1:40665117-40665136 | Msa0547440:intron | 50.0% | |
| GCAAAAACAGACGCAACAGC+AGG | - | chr4_1:40665367-40665386 | Msa0547440:CDS | 50.0% | |
| ATCATCGAGAAGGGAATGCC+TGG | - | chr4_1:40665412-40665431 | Msa0547440:intron | 50.0% | |
| TCATCGAGAAGGGAATGCCT+GGG | - | chr4_1:40665413-40665432 | Msa0547440:intron | 50.0% | |
| ! | CGAGAATTGCTTTGTTCCGG+AGG | - | chr4_1:40665823-40665842 | Msa0547440:intron | 50.0% |
| TCTTAGTGAGTGGCTGAGTG+GGG | + | chr4_1:40666283-40666302 | None:intergenic | 50.0% | |
| GTTCTTAGTGAGTGGCTGAG+TGG | + | chr4_1:40666285-40666304 | None:intergenic | 50.0% | |
| CTATGTCATGATGTCTGGGC+TGG | - | chr4_1:40666547-40666566 | Msa0547440:intron | 50.0% | |
| ! | CATGATGTCTGGGCTGGATT+TGG | - | chr4_1:40666553-40666572 | Msa0547440:intron | 50.0% |
| ! | TGTCTGGGCTGGATTTGGAA+AGG | - | chr4_1:40666558-40666577 | Msa0547440:intron | 50.0% |
| CTGCATAATACCAAGGGGAC+CGG | + | chr4_1:40666597-40666616 | None:intergenic | 50.0% | |
| AGCAGTTCGGTCGTCCTATT+GGG | - | chr4_1:40666657-40666676 | Msa0547440:intron | 50.0% | |
| !! | CAGATTTGAGGAGGCACCTT+TGG | + | chr4_1:40666970-40666989 | None:intergenic | 50.0% |
| TCTTACTCGTTCCATGGGAG+TGG | - | chr4_1:40667538-40667557 | Msa0547440:intron | 50.0% | |
| CTTACTCGTTCCATGGGAGT+GGG | - | chr4_1:40667539-40667558 | Msa0547440:intron | 50.0% | |
| TTACTCGTTCCATGGGAGTG+GGG | - | chr4_1:40667540-40667559 | Msa0547440:intron | 50.0% | |
| ! | ATTTTACGACCCCACTCCCA+TGG | + | chr4_1:40667552-40667571 | None:intergenic | 50.0% |
| ! | CTAAGGGGGGTGTATTGGAT+TGG | + | chr4_1:40667869-40667888 | None:intergenic | 50.0% |
| CCAAGATTTGTCCCACTAGG+TGG | + | chr4_1:40667964-40667983 | None:intergenic | 50.0% | |
| CCACCTAGTGGGACAAATCT+TGG | - | chr4_1:40667961-40667980 | Msa0547440:intron | 50.0% | |
| GATGCGAAGCTCTACGAGAT+CGG | - | chr4_1:40668498-40668517 | Msa0547440:intron | 50.0% | |
| ATGCGAAGCTCTACGAGATC+GGG | - | chr4_1:40668499-40668518 | Msa0547440:intron | 50.0% | |
| CTCCATGGGATTACTGCACC+AGG | - | chr4_1:40663514-40663533 | Msa0547440:intron | 55.0% | |
| ! | GAGTATGGAGGGCTTGGTCT+AGG | - | chr4_1:40664306-40664325 | Msa0547440:intron | 55.0% |
| AGCCGAGCTTCAGGATCTGT+TGG | - | chr4_1:40664363-40664382 | Msa0547440:intron | 55.0% | |
| TGGGGATCATGTGGGAGCTT+TGG | - | chr4_1:40664964-40664983 | Msa0547440:intron | 55.0% | |
| GACGCAACAGCAGGGTCAAA+AGG | - | chr4_1:40665376-40665395 | Msa0547440:CDS | 55.0% | |
| GAGCAGTTCGGTCGTCCTAT+TGG | - | chr4_1:40666656-40666675 | Msa0547440:intron | 55.0% | |
| GCAGTTCGGTCGTCCTATTG+GGG | - | chr4_1:40666658-40666677 | Msa0547440:intron | 55.0% | |
| GTAGCTCGGGACTGTGACAA+CGG | - | chr4_1:40666934-40666953 | Msa0547440:intron | 55.0% | |
| TGCAACCCCCTCCCAATTCT+AGG | + | chr4_1:40667374-40667393 | None:intergenic | 55.0% | |
| CGTAGAGCTTCGCATCTCTG+AGG | + | chr4_1:40668494-40668513 | None:intergenic | 55.0% | |
| TGCGAAGCTCTACGAGATCG+GGG | - | chr4_1:40668500-40668519 | Msa0547440:intron | 55.0% | |
| TTGACTGGAACTGAGCGCCT+CGG | - | chr4_1:40668602-40668621 | Msa0547440:CDS | 55.0% | |
| ! | GCAGAGGAGTATGGAGGGCT+TGG | - | chr4_1:40664300-40664319 | Msa0547440:intron | 60.0% |
| !! | GTTTTAGCAGCCGGTCCCCT+TGG | - | chr4_1:40666584-40666603 | Msa0547440:intron | 60.0% |
| ! | TCTCTGAGGAGACGACCGGT+TGG | + | chr4_1:40668480-40668499 | None:intergenic | 60.0% |
| ! | CGCATCTCTGAGGAGACGAC+CGG | + | chr4_1:40668484-40668503 | None:intergenic | 60.0% |
| AAGCTCTACGAGATCGGGGC+CGG | - | chr4_1:40668504-40668523 | Msa0547440:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 40661796 | 40668981 | 40661796 | ID=Msa0547440;Name=Msa0547440 |
| chr4_1 | mRNA | 40661796 | 40668981 | 40661796 | ID=Msa0547440-mRNA-1;Parent=Msa0547440;Name=Msa0547440-mRNA-1;_AED=0.09;_eAED=0.09;_QI=322|1|1|1|1|1|14|400|417 |
| chr4_1 | exon | 40661796 | 40662399 | 40661796 | ID=Msa0547440-mRNA-1:exon:10392;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40663805 | 40663859 | 40663805 | ID=Msa0547440-mRNA-1:exon:10391;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40663940 | 40663980 | 40663940 | ID=Msa0547440-mRNA-1:exon:10390;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40664080 | 40664234 | 40664080 | ID=Msa0547440-mRNA-1:exon:10389;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40664905 | 40664969 | 40664905 | ID=Msa0547440-mRNA-1:exon:10388;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40665058 | 40665108 | 40665058 | ID=Msa0547440-mRNA-1:exon:10387;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40665343 | 40665419 | 40665343 | ID=Msa0547440-mRNA-1:exon:10386;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40665580 | 40665689 | 40665580 | ID=Msa0547440-mRNA-1:exon:10385;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40665773 | 40665821 | 40665773 | ID=Msa0547440-mRNA-1:exon:10384;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40666220 | 40666264 | 40666220 | ID=Msa0547440-mRNA-1:exon:10383;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40666349 | 40666473 | 40666349 | ID=Msa0547440-mRNA-1:exon:10382;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40667242 | 40667299 | 40667242 | ID=Msa0547440-mRNA-1:exon:10381;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40667776 | 40667859 | 40667776 | ID=Msa0547440-mRNA-1:exon:10380;Parent=Msa0547440-mRNA-1 |
| chr4_1 | exon | 40668525 | 40668981 | 40668525 | ID=Msa0547440-mRNA-1:exon:10379;Parent=Msa0547440-mRNA-1 |
| chr4_1 | five_prime_UTR | 40668660 | 40668981 | 40668660 | ID=Msa0547440-mRNA-1:five_prime_utr;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40668525 | 40668659 | 40668525 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40667776 | 40667859 | 40667776 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40667242 | 40667299 | 40667242 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40666349 | 40666473 | 40666349 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40666220 | 40666264 | 40666220 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40665773 | 40665821 | 40665773 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40665580 | 40665689 | 40665580 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40665343 | 40665419 | 40665343 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40665058 | 40665108 | 40665058 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40664905 | 40664969 | 40664905 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40664080 | 40664234 | 40664080 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40663940 | 40663980 | 40663940 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40663805 | 40663859 | 40663805 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | CDS | 40662196 | 40662399 | 40662196 | ID=Msa0547440-mRNA-1:cds;Parent=Msa0547440-mRNA-1 |
| chr4_1 | three_prime_UTR | 40661796 | 40662195 | 40661796 | ID=Msa0547440-mRNA-1:three_prime_utr;Parent=Msa0547440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
