AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0349450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0349450 MtrunA17_Chr3g0113311 99.281 278 2 0 1 278 1 278 0.0 567
Msa0349450 MtrunA17_Chr4g0006181 70.943 265 73 1 11 275 70 330 1.43e-132 379
Msa0349450 MtrunA17_Chr6g0462031 34.545 220 96 5 60 275 49 224 9.05e-31 115
Msa0349450 MtrunA17_Chr2g0279001 32.800 250 78 7 60 271 60 257 1.23e-29 112
Msa0349450 MtrunA17_Chr8g0345631 31.206 282 107 9 20 270 21 246 4.12e-27 106
Msa0349450 MtrunA17_Chr2g0301081 29.097 299 129 9 1 270 1 245 3.64e-25 100
Msa0349450 MtrunA17_Chr3g0133901 29.435 248 106 5 42 270 46 243 1.62e-23 96.7
Msa0349450 MtrunA17_Chr3g0092091 33.610 241 78 8 52 269 48 229 2.31e-23 95.9
Msa0349450 MtrunA17_Chr6g0476641 33.486 218 91 5 67 274 91 264 5.66e-23 95.5
Msa0349450 MtrunA17_Chr2g0318521 42.177 147 70 5 139 270 92 238 2.28e-22 93.6
Msa0349450 MtrunA17_Chr6g0453151 45.752 153 62 8 139 274 162 310 4.12e-22 94.0
Msa0349450 MtrunA17_Chr6g0453141 46.309 149 59 8 139 270 95 239 5.47e-22 92.4
Msa0349450 MtrunA17_Chr4g0051941 33.992 253 93 11 45 270 35 240 8.30e-22 92.0
Msa0349450 MtrunA17_Chr6g0453181 45.638 149 60 8 139 270 95 239 1.47e-21 91.3
Msa0349450 MtrunA17_Chr6g0453161 44.872 156 65 8 136 274 94 245 3.22e-21 93.2
Msa0349450 MtrunA17_Chr6g0453161 45.098 153 63 8 139 274 362 510 8.03e-21 92.0
Msa0349450 MtrunA17_Chr5g0447531 44.371 151 63 8 137 270 93 239 3.23e-21 90.1
Msa0349450 MtrunA17_Chr5g0448411 29.811 265 115 7 33 269 31 252 2.55e-20 88.2
Msa0349450 MtrunA17_Chr5g0448421 27.946 297 143 7 1 269 1 254 1.39e-19 85.9
Msa0349450 MtrunA17_Chr1g0157481 28.517 263 103 8 44 270 95 308 2.06e-18 83.6
Msa0349450 MtrunA17_Chr6g0464511 48.810 84 32 4 194 270 107 186 1.51e-12 65.5
Msa0349450 MtrunA17_Chr6g0453171 47.368 76 30 3 201 270 1 72 9.22e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0349450 AT2G40100.1 70.522 268 78 1 11 278 10 276 4.86e-138 390
Msa0349450 AT3G08940.2 71.260 254 67 1 22 275 23 270 1.65e-128 367
Msa0349450 AT5G01530.1 76.923 221 51 0 55 275 53 273 7.35e-126 360
Msa0349450 AT2G40100.2 62.286 175 66 0 11 185 10 184 3.18e-75 228
Msa0349450 AT3G08940.1 60.479 167 60 1 22 188 23 183 4.49e-66 206
Msa0349450 AT3G54890.1 34.583 240 105 7 40 275 32 223 4.00e-34 124
Msa0349450 AT1G15820.1 34.454 238 70 7 67 271 70 254 6.72e-31 116
Msa0349450 AT3G54890.4 33.333 213 91 6 40 249 32 196 2.48e-27 105
Msa0349450 AT3G47470.1 31.879 298 106 12 1 269 1 230 8.91e-27 105
Msa0349450 AT3G61470.1 32.780 241 84 8 54 270 49 235 7.84e-26 102
Msa0349450 AT4G10340.1 35.616 219 85 7 67 274 82 255 1.57e-24 100
Msa0349450 AT1G45474.2 30.802 237 85 6 60 270 49 232 2.98e-23 95.9
Msa0349450 AT1G45474.1 30.802 237 85 6 60 270 49 232 2.98e-23 95.9
Msa0349450 AT1G29920.1 46.309 149 64 7 137 270 94 241 5.86e-23 95.5
Msa0349450 AT1G29910.1 46.309 149 64 7 137 270 94 241 5.86e-23 95.5
Msa0349450 AT1G29930.1 46.309 149 64 7 137 270 94 241 6.50e-23 95.1
Msa0349450 AT5G54270.1 42.177 147 70 4 139 270 93 239 1.08e-22 94.7
Msa0349450 AT2G34430.1 45.638 149 65 7 137 270 93 240 1.49e-22 94.4
Msa0349450 AT2G34420.1 45.638 149 65 7 137 270 92 239 1.55e-22 94.4
Msa0349450 AT3G27690.1 32.660 297 116 14 1 270 1 240 7.69e-22 92.4
Msa0349450 AT3G27690.2 32.095 296 119 13 2 270 32 272 1.13e-21 92.4
Msa0349450 AT1G19150.1 31.873 251 92 9 45 270 52 248 1.67e-21 91.7
Msa0349450 AT2G05100.1 45.638 149 60 8 139 270 95 239 2.21e-21 91.3
Msa0349450 AT2G05070.1 45.638 149 60 8 139 270 95 239 2.85e-21 90.9
Msa0349450 AT1G61520.3 30.894 246 99 7 52 269 48 250 1.83e-20 89.0
Msa0349450 AT1G61520.1 30.894 246 99 7 52 269 48 250 1.83e-20 89.0
Msa0349450 AT2G05100.2 43.537 147 62 8 139 268 95 237 1.04e-17 82.0
Msa0349450 AT1G76570.1 31.140 228 89 7 67 270 123 306 4.19e-17 80.1
Msa0349450 AT1G61520.2 30.222 225 86 7 73 269 14 195 5.17e-15 72.8

Find 112 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGCTTTGTTTGGATTT+AGG 0.211139 3_1:-13032791 None:intergenic
TGACTCACTTGACCAGAATT+TGG 0.222195 3_1:+13033100 Msa0349450:CDS
CTTATCTGCATGGGTGAAAT+TGG 0.227572 3_1:-13032667 None:intergenic
GCAATTCAAGCTGCTGTTAC+AGG 0.243141 3_1:+13036155 Msa0349450:CDS
TGAAGTCTTTCTTTCTCTTC+AGG 0.258306 3_1:-13036080 None:intergenic
AGACGATCATTGAGCTAAAA+AGG 0.258510 3_1:-13036233 None:intergenic
AACCTTGCAGGTGATATTAT+TGG 0.266583 3_1:+13033128 Msa0349450:CDS
TCTCAATTAGCACATTGATA+TGG 0.271043 3_1:+13035943 Msa0349450:CDS
AAAGCCAGCACCTAAGAAAA+AGG 0.307836 3_1:+13032926 Msa0349450:CDS
CAAGGTTCTTAGCCAAATTC+TGG 0.307978 3_1:-13033112 None:intergenic
ATAAGAAAATAATTAAATAT+AGG 0.309444 3_1:+13036450 Msa0349450:three_prime_UTR
GCTTGGTGCTCTTGGTGCTT+TGG 0.323196 3_1:+13033262 Msa0349450:CDS
TGGATTGAAGTACTAGTAAT+TGG 0.328487 3_1:+13035963 Msa0349450:CDS
TAAGAAAATAATTAAATATA+GGG 0.341895 3_1:+13036451 Msa0349450:three_prime_UTR
GTTGCCATGGTGGCTTTGTT+TGG 0.346919 3_1:-13032798 None:intergenic
ACCTTGCAGGTGATATTATT+GGG 0.350683 3_1:+13033129 Msa0349450:CDS
AGAGTACAAACATACATAAA+TGG 0.356303 3_1:-13036338 None:intergenic
CGTGAGTGTGAGGTTATTCA+TGG 0.369098 3_1:+13033227 Msa0349450:CDS
AATTTGGCTAAGAACCTTGC+AGG 0.371981 3_1:+13033116 Msa0349450:CDS
GGAAAATTCTTTGATCCTCT+TGG 0.373277 3_1:+13036044 Msa0349450:CDS
TTCTTTCTCTTCAGGATCAC+TGG 0.375610 3_1:-13036072 None:intergenic
ATTCTTTGATCCTCTTGGTT+TGG 0.379922 3_1:+13036049 Msa0349450:CDS
GTTACAGGAAAAGGACCTAT+TGG 0.390427 3_1:+13036170 Msa0349450:CDS
CGACATGGTGGCGGCGGTTG+CGG 0.399441 3_1:-13032823 None:intergenic
ACCTCCGTGTACGGCTGAAA+CGG 0.403781 3_1:-13033185 None:intergenic
TGGCTCGATGGGACGATGAT+AGG 0.411338 3_1:+13033017 Msa0349450:CDS
TGGGCTATGCTTGGTGCTCT+TGG 0.414754 3_1:+13033254 Msa0349450:CDS
AGAGATTAAGCATTCTCGTT+TGG 0.426448 3_1:+13036109 Msa0349450:CDS
TTGGCTGTTGAAGCTTTCAC+TGG 0.429779 3_1:+13033281 Msa0349450:CDS
GATGGGCTAGTGTGGTTTCC+CGG 0.431647 3_1:+13032978 Msa0349450:CDS
CAAGCTGCTGTTACAGGAAA+AGG 0.433317 3_1:+13036161 Msa0349450:CDS
TATCTTGCTTCTTATCTGCA+TGG 0.438077 3_1:-13032677 None:intergenic
CAGGTGATATTATTGGGACT+AGG 0.438244 3_1:+13033135 Msa0349450:CDS
ATCTTGCTTCTTATCTGCAT+GGG 0.445699 3_1:-13032676 None:intergenic
TCAAATTGCAGATACTCAAC+AGG 0.446897 3_1:-13033074 None:intergenic
GTGGAAGGATCATCCTACTT+TGG 0.447717 3_1:+13035906 Msa0349450:CDS
ACGAACTCTTCCCATGTTTG+AGG 0.451082 3_1:-13032877 None:intergenic
TTGCAGATACTCAACAGGTT+TGG 0.454427 3_1:-13033069 None:intergenic
GTGAGGTTATTCATGGAAGA+TGG 0.455594 3_1:+13033234 Msa0349450:CDS
AAGGTAGCAATGAAACCAAT+AGG 0.458304 3_1:-13036185 None:intergenic
ATCGTCCCATCGAGCCATTC+CGG 0.467484 3_1:-13033011 None:intergenic
ATCAATGTGCTAATTGAGAA+TGG 0.470549 3_1:-13035939 None:intergenic
CATGGGTGAAATTGGATGGT+TGG 0.470670 3_1:-13032659 None:intergenic
AGCCACCGGAATGGCTCGAT+GGG 0.472591 3_1:+13033006 Msa0349450:CDS
GGCGGTTGCGGTGGTTGCCA+TGG 0.475490 3_1:-13032811 None:intergenic
AGTGTGTGACTGTGAGGAGA+AGG 0.478642 3_1:-13032708 None:intergenic
CATTCCGGTGGCTGAGCACC+GGG 0.479699 3_1:-13032996 None:intergenic
CTGCAAACCAACCTCAAACA+TGG 0.480790 3_1:+13032866 Msa0349450:CDS
TAAGCATTCTCGTTTGGCTA+TGG 0.486266 3_1:+13036115 Msa0349450:CDS
CTTAGTACCTAGGTTGAAGA+AGG 0.490118 3_1:-13032901 None:intergenic
CTATGTTCAGGTAGAGTTGG+TGG 0.493133 3_1:+13035887 Msa0349450:intron
CCATTCCGGTGGCTGAGCAC+CGG 0.494422 3_1:-13032997 None:intergenic
CTGGCTTTAACTTAGTACCT+AGG 0.494679 3_1:-13032911 None:intergenic
GGCTTCACATGTTATGTCAC+TGG 0.497566 3_1:-13036211 None:intergenic
TTGGCTACATTGAGTTTCAA+AGG 0.497966 3_1:+13035982 Msa0349450:CDS
GAAATGTTAACGAGTGCCCC+CGG 0.503988 3_1:+13036473 Msa0349450:three_prime_UTR
GTTTCCCGGTGCTCAGCCAC+CGG 0.511424 3_1:+13032992 Msa0349450:CDS
GTTCGTGCCTTCTTCAACCT+AGG 0.511545 3_1:+13032894 Msa0349450:CDS
GCATTCTCGTTTGGCTATGG+TGG 0.512452 3_1:+13036118 Msa0349450:CDS
TAACTATGTTCAGGTAGAGT+TGG 0.512557 3_1:+13035884 Msa0349450:intron
CATGGTGGCGGCGGTTGCGG+TGG 0.515542 3_1:-13032820 None:intergenic
CAGCCACCGGAATGGCTCGA+TGG 0.522740 3_1:+13033005 Msa0349450:CDS
GTGTGTGACTGTGAGGAGAA+GGG 0.522971 3_1:-13032707 None:intergenic
CAGAGCTTGACCCAGAGAAA+AGG 0.527322 3_1:+13036009 Msa0349450:CDS
AAGGGCTTAAAGAGTGCCCC+GGG 0.529221 3_1:-13036491 None:intergenic
GATTTAGGAACAAGGTGTGT+CGG 0.531693 3_1:-13032776 None:intergenic
AGGTGATATTATTGGGACTA+GGG 0.538036 3_1:+13033136 Msa0349450:CDS
ACTCTTCCCATGTTTGAGGT+TGG 0.539963 3_1:-13032873 None:intergenic
TAAGAAAACAAGAAAGTGAT+GGG 0.544667 3_1:+13032961 Msa0349450:CDS
CATGTTATGTCACTGGTTGA+AGG 0.546151 3_1:-13036204 None:intergenic
GGTGTCGCATGGCAAGATGC+TGG 0.547425 3_1:+13033302 Msa0349450:CDS
GTGTACGGCTGAAACGGTGT+AGG 0.555155 3_1:-13033179 None:intergenic
TGCAAACCAACCTCAAACAT+GGG 0.555282 3_1:+13032867 Msa0349450:CDS
TGGAAGAGAAAATCCAAAGT+AGG 0.556136 3_1:-13035919 None:intergenic
CCGGTGCTCAGCCACCGGAA+TGG 0.556686 3_1:+13032997 Msa0349450:CDS
TGAGGTTATTCATGGAAGAT+GGG 0.560063 3_1:+13033235 Msa0349450:CDS
AAGCTTTCACTGGTGTCGCA+TGG 0.563145 3_1:+13033291 Msa0349450:CDS
TAAGGGCTTAAAGAGTGCCC+CGG 0.563217 3_1:-13036492 None:intergenic
CATGGAAGATGGGCTATGCT+TGG 0.567622 3_1:+13033245 Msa0349450:CDS
GTAAGAAAACAAGAAAGTGA+TGG 0.567972 3_1:+13032960 Msa0349450:CDS
ACAGGTTTGGCTAATCCCAA+TGG 0.582632 3_1:-13033056 None:intergenic
CGCATGGCAAGATGCTGGAA+AGG 0.585268 3_1:+13033307 Msa0349450:CDS
AAGAAAGTGATGGGCTAGTG+TGG 0.588770 3_1:+13032970 Msa0349450:CDS
GGTTGCGGTGGTTGCCATGG+TGG 0.595634 3_1:-13032808 None:intergenic
TCAGAGGTTTCGTGAGTGTG+AGG 0.596859 3_1:+13033217 Msa0349450:CDS
AAAATGCGACATGGTGGCGG+CGG 0.597180 3_1:-13032829 None:intergenic
CAGCTTGAATTGCAAAGATG+AGG 0.604000 3_1:-13036145 None:intergenic
TCCCAATAATATCACCTGCA+AGG 0.604262 3_1:-13033130 None:intergenic
ATGCTGCTTGTAGCAACTCA+CGG 0.618488 3_1:+13036379 Msa0349450:three_prime_UTR
TCTGCATGGGTGAAATTGGA+TGG 0.618783 3_1:-13032663 None:intergenic
TGATATTATTGGGACTAGGG+TGG 0.619050 3_1:+13033139 Msa0349450:CDS
GGTGTGTCGGAGGGACAAAG+TGG 0.627622 3_1:-13032763 None:intergenic
TGTACGGCTGAAACGGTGTA+GGG 0.629672 3_1:-13033178 None:intergenic
TTAGGAACAAGGTGTGTCGG+AGG 0.634868 3_1:-13032773 None:intergenic
GTTCAGGTAGAGTTGGTGGA+AGG 0.634996 3_1:+13035891 Msa0349450:intron
AAATCCAAACAAAGCCACCA+TGG 0.639928 3_1:+13032794 Msa0349450:exon
TAGGAACAAGGTGTGTCGGA+GGG 0.644266 3_1:-13032772 None:intergenic
TACACCGTTTCAGCCGTACA+CGG 0.655431 3_1:+13033181 Msa0349450:CDS
GTCCCATCGAGCCATTCCGG+TGG 0.656729 3_1:-13033008 None:intergenic
TTTGTTTGGATTTAGGAACA+AGG 0.661674 3_1:-13032784 None:intergenic
TGACTGTGAGGAGAAGGGAG+TGG 0.671188 3_1:-13032702 None:intergenic
GTGTGTCGGAGGGACAAAGT+GGG 0.677501 3_1:-13032762 None:intergenic
GGATCACTGGCCAAACCAAG+AGG 0.688433 3_1:-13036059 None:intergenic
ATCCCAATGGATCAAAACCA+CGG 0.689660 3_1:-13033043 None:intergenic
GAGAAAAGGTTATACCCAGG+TGG 0.695158 3_1:+13036023 Msa0349450:CDS
TCATAGAGTGTGTGACTGTG+AGG 0.695412 3_1:-13032714 None:intergenic
ACCGTTTCAGCCGTACACGG+AGG 0.695892 3_1:+13033184 Msa0349450:CDS
CCAGAGAAAAGGTTATACCC+AGG 0.700487 3_1:+13036020 Msa0349450:CDS
GGGCTTAAAGAGTGCCCCGG+GGG 0.723359 3_1:-13036489 None:intergenic
GGGACGATGATAGGTGACCG+TGG 0.736281 3_1:+13033026 Msa0349450:CDS
AGGGCTTAAAGAGTGCCCCG+GGG 0.749459 3_1:-13036490 None:intergenic
GACTAGGGTGGAGAGTACAG+AGG 0.768033 3_1:+13033151 Msa0349450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCGATAAAAATTTATA+TGG - chr3_1:13033705-13033724 None:intergenic 10.0%
!! AAAAAAAAAATTATTCAATG+CGG - chr3_1:13035014-13035033 None:intergenic 10.0%
!!! ATTAAAAAATAGAAGTTTTT+TGG + chr3_1:13035034-13035053 Msa0349450:intron 10.0%
!!! ATAAAGTAATTTTTTACATT+TGG + chr3_1:13035205-13035224 Msa0349450:intron 10.0%
!!! TAAAGTAATTTTTTACATTT+GGG + chr3_1:13035206-13035225 Msa0349450:intron 10.0%
!! TGAAAAAAAAAAAAAAACAA+CGG - chr3_1:13035772-13035791 None:intergenic 10.0%
!!! AAATTAACTAAATTTTAAGA+TGG - chr3_1:13036281-13036300 None:intergenic 10.0%
!! TAAAAACATACCAATTTATA+TGG + chr3_1:13033593-13033612 Msa0349450:intron 15.0%
!! ATTCAAATATTGGATTAATT+TGG + chr3_1:13033624-13033643 Msa0349450:intron 15.0%
!! TAAATAGTTAAGGTTATAAT+AGG - chr3_1:13034038-13034057 None:intergenic 15.0%
!! AAAAGAGTAATAAATAGTTA+AGG - chr3_1:13034048-13034067 None:intergenic 15.0%
!! TTGTCCTTAATAAATAATAT+GGG - chr3_1:13034095-13034114 None:intergenic 15.0%
!! ATTGTCCTTAATAAATAATA+TGG - chr3_1:13034096-13034115 None:intergenic 15.0%
!! AAAAAAAAATTATTCAATGC+GGG - chr3_1:13035013-13035032 None:intergenic 15.0%
!!! ATTTTTAATTAAGATTGCAA+GGG - chr3_1:13035604-13035623 None:intergenic 15.0%
!!! TATTTTTAATTAAGATTGCA+AGG - chr3_1:13035605-13035624 None:intergenic 15.0%
!! TTTACAAACACCAATTTATA+TGG + chr3_1:13033460-13033479 Msa0349450:intron 20.0%
!! ATTACGTTATCCATATAAAT+TGG - chr3_1:13033606-13033625 None:intergenic 20.0%
!!! TGTTACTTGACAAAAAAAAA+AGG - chr3_1:13033788-13033807 None:intergenic 20.0%
!! TGTAAAGTGACATATAATTT+GGG - chr3_1:13033987-13034006 None:intergenic 20.0%
!! TTGTAAAGTGACATATAATT+TGG - chr3_1:13033988-13034007 None:intergenic 20.0%
!! CTTTCCCATATTATTTATTA+AGG + chr3_1:13034088-13034107 Msa0349450:intron 20.0%
!! TAATAATAATTCCTAACTCA+AGG - chr3_1:13034672-13034691 None:intergenic 20.0%
!!! AAGTTCAAGTTGATAAAAAA+TGG - chr3_1:13034759-13034778 None:intergenic 20.0%
!!! TTTGACTTTGTAATTTCATA+AGG - chr3_1:13034784-13034803 None:intergenic 20.0%
!! AAAAAAAATTATTCAATGCG+GGG - chr3_1:13035012-13035031 None:intergenic 20.0%
!! TCACTTTAACATTTATTAGA+CGG + chr3_1:13035100-13035119 Msa0349450:intron 20.0%
!! AGTTGATCTTTAAATATCAA+TGG + chr3_1:13035131-13035150 Msa0349450:intron 20.0%
!! AGACAAAAAAAATGAGTTTA+AGG + chr3_1:13035413-13035432 Msa0349450:intron 20.0%
!! TAGTAGTTATCAAAACAAAA+TGG - chr3_1:13035862-13035881 None:intergenic 20.0%
!! TTTTTCACTTCCTTTTTCTT+AGG - chr3_1:13032939-13032958 None:intergenic 25.0%
! TAAGAAAACAAGAAAGTGAT+GGG + chr3_1:13032961-13032980 Msa0349450:CDS 25.0%
!!! GCAAATTTTTTTAGATGAGT+TGG + chr3_1:13033390-13033409 Msa0349450:intron 25.0%
!!! TTTTTAGATGAGTTGGATTT+TGG + chr3_1:13033397-13033416 Msa0349450:intron 25.0%
! GGATAACGTAATTCAAATAT+TGG + chr3_1:13033614-13033633 Msa0349450:intron 25.0%
!!! TTTTTTGTCAAGTAACATAG+TGG + chr3_1:13033791-13033810 Msa0349450:intron 25.0%
!! TATCATTTAAGACGAATAAG+TGG + chr3_1:13033819-13033838 Msa0349450:intron 25.0%
! TAAATATAACCGGTTATATC+TGG - chr3_1:13033918-13033937 None:intergenic 25.0%
! AAGTAACATTAATGTTGCAT+TGG - chr3_1:13034013-13034032 None:intergenic 25.0%
! TGAAAGATCAATTGAACAAA+TGG - chr3_1:13034278-13034297 None:intergenic 25.0%
! TGATCTTTCATTAACATCAT+TGG + chr3_1:13034288-13034307 Msa0349450:intron 25.0%
! GATCTTTCATTAACATCATT+GGG + chr3_1:13034289-13034308 Msa0349450:intron 25.0%
!! GATTTTATGTGTATTAGCTA+CGG + chr3_1:13034384-13034403 Msa0349450:intron 25.0%
!! TTAAGCTTTTTGTATTAGTG+TGG + chr3_1:13034462-13034481 Msa0349450:intron 25.0%
!! TTTTCTTTTAACCTTGAGTT+AGG + chr3_1:13034658-13034677 Msa0349450:intron 25.0%
! TATATTACAACATTGCTCTT+GGG - chr3_1:13035064-13035083 None:intergenic 25.0%
! ATATATTACAACATTGCTCT+TGG - chr3_1:13035065-13035084 None:intergenic 25.0%
!!! GTAATTTTTTACATTTGGGA+CGG + chr3_1:13035210-13035229 Msa0349450:intron 25.0%
!!! TAATTTTTTACATTTGGGAC+GGG + chr3_1:13035211-13035230 Msa0349450:intron 25.0%
! AAGATTAAAAAAGACTCGTT+TGG + chr3_1:13035456-13035475 Msa0349450:intron 25.0%
!! TTATTTTCATGAGCTTATAG+TGG + chr3_1:13035508-13035527 Msa0349450:intron 25.0%
! GTTTATAGCTTAAAGCTTAT+AGG + chr3_1:13035554-13035573 Msa0349450:intron 25.0%
! AACAGAACCAAAATTAAAGA+TGG + chr3_1:13035793-13035812 Msa0349450:intron 25.0%
!!! TCTTTGTCCATCTTTAATTT+TGG - chr3_1:13035803-13035822 None:intergenic 25.0%
! AGAGTACAAACATACATAAA+TGG - chr3_1:13036341-13036360 None:intergenic 25.0%
TTTGTTTGGATTTAGGAACA+AGG - chr3_1:13032787-13032806 None:intergenic 30.0%
GTAAGAAAACAAGAAAGTGA+TGG + chr3_1:13032960-13032979 Msa0349450:CDS 30.0%
TCATAGTCATTGTTCAATTG+AGG + chr3_1:13033338-13033357 Msa0349450:intron 30.0%
! GTTGGATTTTGGATTCATTA+AGG + chr3_1:13033408-13033427 Msa0349450:intron 30.0%
TGCTCTTTCAATCTTAATGT+TGG - chr3_1:13033440-13033459 None:intergenic 30.0%
ACCAATTTATATGGATAACG+CGG + chr3_1:13033469-13033488 Msa0349450:intron 30.0%
GAGTCAACTCTTTATCAATT+AGG + chr3_1:13033517-13033536 Msa0349450:intron 30.0%
ATCAATTAGGCTAACATACT+TGG + chr3_1:13033530-13033549 Msa0349450:intron 30.0%
! CAAAATTGTTGTTCGTGTTT+AGG - chr3_1:13033678-13033697 None:intergenic 30.0%
AAAAGCTTAACCAGGAATAT+TGG - chr3_1:13034452-13034471 None:intergenic 30.0%
CTAATACAAAAAGCTTAACC+AGG - chr3_1:13034460-13034479 None:intergenic 30.0%
! ATTTTTGTCTTCATCGTTCT+TGG - chr3_1:13034515-13034534 None:intergenic 30.0%
! TCTTTTGTTCAAATTCCAAC+AGG + chr3_1:13034578-13034597 Msa0349450:intron 30.0%
ATATTACAACATTGCTCTTG+GGG - chr3_1:13035063-13035082 None:intergenic 30.0%
! TTTTCCTCGATTTCAAAACA+CGG - chr3_1:13035289-13035308 None:intergenic 30.0%
!!! TTTTTTGTCTTACCTAGACA+TGG - chr3_1:13035403-13035422 None:intergenic 30.0%
CTGATTGAATTTGTAGTGTT+CGG - chr3_1:13035704-13035723 None:intergenic 30.0%
TAGTTTATAGCAGATGACTA+CGG - chr3_1:13035736-13035755 None:intergenic 30.0%
ACTACTATCTAACTATGTTC+AGG + chr3_1:13035875-13035894 Msa0349450:intron 30.0%
ATCAATGTGCTAATTGAGAA+TGG - chr3_1:13035942-13035961 None:intergenic 30.0%
TCTCAATTAGCACATTGATA+TGG + chr3_1:13035943-13035962 Msa0349450:CDS 30.0%
! TGGATTGAAGTACTAGTAAT+TGG + chr3_1:13035963-13035982 Msa0349450:CDS 30.0%
ATCTTGCTTCTTATCTGCAT+GGG - chr3_1:13032679-13032698 None:intergenic 35.0%
TATCTTGCTTCTTATCTGCA+TGG - chr3_1:13032680-13032699 None:intergenic 35.0%
TCAAATTGCAGATACTCAAC+AGG - chr3_1:13033077-13033096 None:intergenic 35.0%
AACCTTGCAGGTGATATTAT+TGG + chr3_1:13033128-13033147 Msa0349450:CDS 35.0%
ACCTTGCAGGTGATATTATT+GGG + chr3_1:13033129-13033148 Msa0349450:CDS 35.0%
AGGTGATATTATTGGGACTA+GGG + chr3_1:13033136-13033155 Msa0349450:CDS 35.0%
TGAGGTTATTCATGGAAGAT+GGG + chr3_1:13033235-13033254 Msa0349450:CDS 35.0%
ACCGCGTTATCCATATAAAT+TGG - chr3_1:13033473-13033492 None:intergenic 35.0%
CCTAAAGCGACATACAATTT+GGG - chr3_1:13033951-13033970 None:intergenic 35.0%
!! CCAAATTGTATGTCGCTTTA+GGG + chr3_1:13033949-13033968 Msa0349450:intron 35.0%
! CCCAAATTGTATGACGTTTT+GGG - chr3_1:13034188-13034207 None:intergenic 35.0%
CCCAAAACGTCATACAATTT+GGG + chr3_1:13034185-13034204 Msa0349450:intron 35.0%
! TCCCAAATTGTATGACGTTT+TGG - chr3_1:13034189-13034208 None:intergenic 35.0%
TAGCTACGGACAATGTAATA+TGG + chr3_1:13034398-13034417 Msa0349450:intron 35.0%
AGAATCACATACATGACCTA+GGG - chr3_1:13034425-13034444 None:intergenic 35.0%
!!! CTTTTTCAAAACAAGCTGTG+TGG - chr3_1:13034604-13034623 None:intergenic 35.0%
AAGTATATGAGAATCGGGTA+TGG - chr3_1:13034899-13034918 None:intergenic 35.0%
ACGGGTAAGTATATGAGAAT+CGG - chr3_1:13034905-13034924 None:intergenic 35.0%
AAATTATTCAATGCGGGGAT+GGG - chr3_1:13035007-13035026 None:intergenic 35.0%
AAAATTATTCAATGCGGGGA+TGG - chr3_1:13035008-13035027 None:intergenic 35.0%
TTTCCTCGATTTCAAAACAC+GGG - chr3_1:13035288-13035307 None:intergenic 35.0%
TAACTATGTTCAGGTAGAGT+TGG + chr3_1:13035884-13035903 Msa0349450:intron 35.0%
TGGAAGAGAAAATCCAAAGT+AGG - chr3_1:13035922-13035941 None:intergenic 35.0%
TTGGCTACATTGAGTTTCAA+AGG + chr3_1:13035982-13036001 Msa0349450:CDS 35.0%
! GATCAAAGAATTTTCCACCT+GGG - chr3_1:13036040-13036059 None:intergenic 35.0%
GGAAAATTCTTTGATCCTCT+TGG + chr3_1:13036044-13036063 Msa0349450:CDS 35.0%
ATTCTTTGATCCTCTTGGTT+TGG + chr3_1:13036049-13036068 Msa0349450:CDS 35.0%
TGAAGTCTTTCTTTCTCTTC+AGG - chr3_1:13036083-13036102 None:intergenic 35.0%
AGAGATTAAGCATTCTCGTT+TGG + chr3_1:13036109-13036128 Msa0349450:CDS 35.0%
AAGGTAGCAATGAAACCAAT+AGG - chr3_1:13036188-13036207 None:intergenic 35.0%
GACGATCATTGAGCTAAAAA+GGG - chr3_1:13036235-13036254 None:intergenic 35.0%
AGACGATCATTGAGCTAAAA+AGG - chr3_1:13036236-13036255 None:intergenic 35.0%
CTTATCTGCATGGGTGAAAT+TGG - chr3_1:13032670-13032689 None:intergenic 40.0%
GATTTAGGAACAAGGTGTGT+CGG - chr3_1:13032779-13032798 None:intergenic 40.0%
!! TGGTGGCTTTGTTTGGATTT+AGG - chr3_1:13032794-13032813 None:intergenic 40.0%
AAATCCAAACAAAGCCACCA+TGG + chr3_1:13032794-13032813 Msa0349450:exon 40.0%
TGCAAACCAACCTCAAACAT+GGG + chr3_1:13032867-13032886 Msa0349450:CDS 40.0%
! CTTAGTACCTAGGTTGAAGA+AGG - chr3_1:13032904-13032923 None:intergenic 40.0%
!! CTGGCTTTAACTTAGTACCT+AGG - chr3_1:13032914-13032933 None:intergenic 40.0%
AAAGCCAGCACCTAAGAAAA+AGG + chr3_1:13032926-13032945 Msa0349450:CDS 40.0%
! ACTTCCTTTTTCTTAGGTGC+TGG - chr3_1:13032933-13032952 None:intergenic 40.0%
ATCCCAATGGATCAAAACCA+CGG - chr3_1:13033046-13033065 None:intergenic 40.0%
TTGCAGATACTCAACAGGTT+TGG - chr3_1:13033072-13033091 None:intergenic 40.0%
TGACTCACTTGACCAGAATT+TGG + chr3_1:13033100-13033119 Msa0349450:CDS 40.0%
CAAGGTTCTTAGCCAAATTC+TGG - chr3_1:13033115-13033134 None:intergenic 40.0%
AATTTGGCTAAGAACCTTGC+AGG + chr3_1:13033116-13033135 Msa0349450:CDS 40.0%
TCCCAATAATATCACCTGCA+AGG - chr3_1:13033133-13033152 None:intergenic 40.0%
CAGGTGATATTATTGGGACT+AGG + chr3_1:13033135-13033154 Msa0349450:CDS 40.0%
TGATATTATTGGGACTAGGG+TGG + chr3_1:13033139-13033158 Msa0349450:CDS 40.0%
GTGAGGTTATTCATGGAAGA+TGG + chr3_1:13033234-13033253 Msa0349450:CDS 40.0%
ACAAGAACCGAGTTTGAACT+CGG - chr3_1:13033850-13033869 None:intergenic 40.0%
ACGGAGGGAGTAAATATAAC+CGG - chr3_1:13033928-13033947 None:intergenic 40.0%
AAGCGACATACAATTTGGGA+CGG - chr3_1:13033947-13033966 None:intergenic 40.0%
!! CCCAAATTGTATGTCGCTTT+AGG + chr3_1:13033948-13033967 Msa0349450:intron 40.0%
CCCTAAAGCGACATACAATT+TGG - chr3_1:13033952-13033971 None:intergenic 40.0%
GCCCAAAACGTCATACAATT+TGG + chr3_1:13034184-13034203 Msa0349450:intron 40.0%
! GTCATACAATTTGGGACGAA+GGG + chr3_1:13034193-13034212 Msa0349450:intron 40.0%
ATGAAACCGACACATCATCA+CGG - chr3_1:13034241-13034260 None:intergenic 40.0%
!! TGATGATGTGTCGGTTTCAT+AGG + chr3_1:13034241-13034260 Msa0349450:intron 40.0%
!! GATGATGTGTCGGTTTCATA+GGG + chr3_1:13034242-13034261 Msa0349450:intron 40.0%
TAGCGTGTGTGGAAATTAGA+AGG + chr3_1:13034321-13034340 Msa0349450:intron 40.0%
AGCGTGTGTGGAAATTAGAA+GGG + chr3_1:13034322-13034341 Msa0349450:intron 40.0%
GGAAACTATGTGACAAACAG+AGG + chr3_1:13034344-13034363 Msa0349450:intron 40.0%
GACAATGTAATATGGTCCCT+AGG + chr3_1:13034406-13034425 Msa0349450:intron 40.0%
CAGAATCACATACATGACCT+AGG - chr3_1:13034426-13034445 None:intergenic 40.0%
CGGGTAAGTATATGAGAATC+GGG - chr3_1:13034904-13034923 None:intergenic 40.0%
TTCAATTTCTCATCCCCGTT+GGG - chr3_1:13034941-13034960 None:intergenic 40.0%
ATTCAATTTCTCATCCCCGT+TGG - chr3_1:13034942-13034961 None:intergenic 40.0%
AATTATTCAATGCGGGGATG+GGG - chr3_1:13035006-13035025 None:intergenic 40.0%
TGTTAAAGTGAGCGCATTGT+TGG - chr3_1:13035091-13035110 None:intergenic 40.0%
!! TTTTACATTTGGGACGGGTT+TGG + chr3_1:13035216-13035235 Msa0349450:intron 40.0%
! TTTACATTTGGGACGGGTTT+GGG + chr3_1:13035217-13035236 Msa0349450:intron 40.0%
TCAAAACACGGGTATGGAAT+GGG - chr3_1:13035277-13035296 None:intergenic 40.0%
TTCAAAACACGGGTATGGAA+TGG - chr3_1:13035278-13035297 None:intergenic 40.0%
TCGATTTCAAAACACGGGTA+TGG - chr3_1:13035283-13035302 None:intergenic 40.0%
!!! ATACCCGTGTTTTGAAATCG+AGG + chr3_1:13035282-13035301 Msa0349450:intron 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG - chr3_1:13035318-13035337 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG + chr3_1:13035318-13035337 Msa0349450:intron 40.0%
AAAACCCGTCAAATTGGGTT+TGG + chr3_1:13035343-13035362 Msa0349450:intron 40.0%
TCGAACCAAACCCAATTTGA+CGG - chr3_1:13035351-13035370 None:intergenic 40.0%
! CTGGGTATAACCTTTTCTCT+GGG - chr3_1:13036022-13036041 None:intergenic 40.0%
! GGATCAAAGAATTTTCCACC+TGG - chr3_1:13036041-13036060 None:intergenic 40.0%
TTCTTTCTCTTCAGGATCAC+TGG - chr3_1:13036075-13036094 None:intergenic 40.0%
TAAGCATTCTCGTTTGGCTA+TGG + chr3_1:13036115-13036134 Msa0349450:CDS 40.0%
CAGCTTGAATTGCAAAGATG+AGG - chr3_1:13036148-13036167 None:intergenic 40.0%
GTTACAGGAAAAGGACCTAT+TGG + chr3_1:13036170-13036189 Msa0349450:CDS 40.0%
! CATGTTATGTCACTGGTTGA+AGG - chr3_1:13036207-13036226 None:intergenic 40.0%
CATGGGTGAAATTGGATGGT+TGG - chr3_1:13032662-13032681 None:intergenic 45.0%
TCTGCATGGGTGAAATTGGA+TGG - chr3_1:13032666-13032685 None:intergenic 45.0%
TCATAGAGTGTGTGACTGTG+AGG - chr3_1:13032717-13032736 None:intergenic 45.0%
GAAAAAATGCGACATGGTGG+CGG - chr3_1:13032835-13032854 None:intergenic 45.0%
!!! GCCACCATGTCGCATTTTTT+CGG + chr3_1:13032834-13032853 Msa0349450:CDS 45.0%
! AGTGCCGAAAAAATGCGACA+TGG - chr3_1:13032841-13032860 None:intergenic 45.0%
CTGCAAACCAACCTCAAACA+TGG + chr3_1:13032866-13032885 Msa0349450:CDS 45.0%
! ACTCTTCCCATGTTTGAGGT+TGG - chr3_1:13032876-13032895 None:intergenic 45.0%
ACGAACTCTTCCCATGTTTG+AGG - chr3_1:13032880-13032899 None:intergenic 45.0%
!! AAGAAAGTGATGGGCTAGTG+TGG + chr3_1:13032970-13032989 Msa0349450:CDS 45.0%
!!! TGACCGTGGTTTTGATCCAT+TGG + chr3_1:13033040-13033059 Msa0349450:CDS 45.0%
!!! GACCGTGGTTTTGATCCATT+GGG + chr3_1:13033041-13033060 Msa0349450:CDS 45.0%
ACAGGTTTGGCTAATCCCAA+TGG - chr3_1:13033059-13033078 None:intergenic 45.0%
ATCCCAAAAACCTCCGTGTA+CGG - chr3_1:13033197-13033216 None:intergenic 45.0%
CGTGAGTGTGAGGTTATTCA+TGG + chr3_1:13033227-13033246 Msa0349450:CDS 45.0%
TTGGCTGTTGAAGCTTTCAC+TGG + chr3_1:13033281-13033300 Msa0349450:CDS 45.0%
TACCAAGTGAGCTACGTTCA+CGG + chr3_1:13033889-13033908 Msa0349450:intron 45.0%
TCACGGAGACCAGATATAAC+CGG + chr3_1:13033906-13033925 Msa0349450:intron 45.0%
! GACATACAATTTGGGACGGA+GGG - chr3_1:13033943-13033962 None:intergenic 45.0%
! CGTCATACAATTTGGGACGA+AGG + chr3_1:13034192-13034211 Msa0349450:intron 45.0%
! ATGTTCCCGTGATGATGTGT+CGG + chr3_1:13034232-13034251 Msa0349450:intron 45.0%
TGAAACCGACACATCATCAC+GGG - chr3_1:13034240-13034259 None:intergenic 45.0%
GGATCAGATATTAGCGTGTG+TGG + chr3_1:13034310-13034329 Msa0349450:intron 45.0%
GCGTGTGTGGAAATTAGAAG+GGG + chr3_1:13034323-13034342 Msa0349450:intron 45.0%
GATTCTGTCGCCAATATTCC+TGG + chr3_1:13034439-13034458 Msa0349450:intron 45.0%
TGCGTGTGTTTGGTAAGACT+AGG + chr3_1:13034828-13034847 Msa0349450:intron 45.0%
GTGTTTGGTAAGACTAGGCA+TGG + chr3_1:13034833-13034852 Msa0349450:intron 45.0%
GTAAGACTAGGCATGGCAAT+GGG + chr3_1:13034840-13034859 Msa0349450:intron 45.0%
TAAGACTAGGCATGGCAATG+GGG + chr3_1:13034841-13034860 Msa0349450:intron 45.0%
ATGAGAATCGGGTATGGAGA+CGG - chr3_1:13034893-13034912 None:intergenic 45.0%
!! GGAATGGGTAACGGGTATAT+AGG - chr3_1:13035262-13035281 None:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG - chr3_1:13035319-13035338 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG + chr3_1:13035319-13035338 Msa0349450:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG - chr3_1:13035350-13035369 None:intergenic 45.0%
! CAAATTGGGTTTGGTTCGAG+CGG + chr3_1:13035352-13035371 Msa0349450:intron 45.0%
! AAATTGGGTTTGGTTCGAGC+GGG + chr3_1:13035353-13035372 Msa0349450:intron 45.0%
!!! TGGGTTTTGTTGCCATGTCT+AGG + chr3_1:13035388-13035407 Msa0349450:intron 45.0%
CTATGTTCAGGTAGAGTTGG+TGG + chr3_1:13035887-13035906 Msa0349450:intron 45.0%
GTGGAAGGATCATCCTACTT+TGG + chr3_1:13035906-13035925 Msa0349450:CDS 45.0%
! CCTGGGTATAACCTTTTCTC+TGG - chr3_1:13036023-13036042 None:intergenic 45.0%
CCAGAGAAAAGGTTATACCC+AGG + chr3_1:13036020-13036039 Msa0349450:CDS 45.0%
GAGAAAAGGTTATACCCAGG+TGG + chr3_1:13036023-13036042 Msa0349450:CDS 45.0%
GCAATTCAAGCTGCTGTTAC+AGG + chr3_1:13036155-13036174 Msa0349450:CDS 45.0%
CAAGCTGCTGTTACAGGAAA+AGG + chr3_1:13036161-13036180 Msa0349450:CDS 45.0%
GGCTTCACATGTTATGTCAC+TGG - chr3_1:13036214-13036233 None:intergenic 45.0%
! ATGCTGCTTGTAGCAACTCA+CGG + chr3_1:13036379-13036398 Msa0349450:three_prime_UTR 45.0%
!! ATAAGAAAATAATTAAATAT+AGG + chr3_1:13036450-13036469 Msa0349450:three_prime_UTR 5.0%
!! TAAGAAAATAATTAAATATA+GGG + chr3_1:13036451-13036470 Msa0349450:three_prime_UTR 5.0%
GTGTGTGACTGTGAGGAGAA+GGG - chr3_1:13032710-13032729 None:intergenic 50.0%
AGTGTGTGACTGTGAGGAGA+AGG - chr3_1:13032711-13032730 None:intergenic 50.0%
TAGGAACAAGGTGTGTCGGA+GGG - chr3_1:13032775-13032794 None:intergenic 50.0%
TTAGGAACAAGGTGTGTCGG+AGG - chr3_1:13032776-13032795 None:intergenic 50.0%
!! GTTGCCATGGTGGCTTTGTT+TGG - chr3_1:13032801-13032820 None:intergenic 50.0%
GCCGAAAAAATGCGACATGG+TGG - chr3_1:13032838-13032857 None:intergenic 50.0%
GTTCGTGCCTTCTTCAACCT+AGG + chr3_1:13032894-13032913 Msa0349450:CDS 50.0%
TGTACGGCTGAAACGGTGTA+GGG - chr3_1:13033181-13033200 None:intergenic 50.0%
TACACCGTTTCAGCCGTACA+CGG + chr3_1:13033181-13033200 Msa0349450:CDS 50.0%
! AGCCGTACACGGAGGTTTTT+GGG + chr3_1:13033192-13033211 Msa0349450:CDS 50.0%
!!! CGGAGGTTTTTGGGATTCAG+AGG + chr3_1:13033201-13033220 Msa0349450:CDS 50.0%
TCAGAGGTTTCGTGAGTGTG+AGG + chr3_1:13033217-13033236 Msa0349450:CDS 50.0%
!! CATGGAAGATGGGCTATGCT+TGG + chr3_1:13033245-13033264 Msa0349450:CDS 50.0%
!! AAGCTTTCACTGGTGTCGCA+TGG + chr3_1:13033291-13033310 Msa0349450:CDS 50.0%
! GGAGTGTCCGAGTTCAAACT+CGG + chr3_1:13033840-13033859 Msa0349450:intron 50.0%
! CGACATACAATTTGGGACGG+AGG - chr3_1:13033944-13033963 None:intergenic 50.0%
AAACAAGCTGTGTGGCCTGT+TGG - chr3_1:13034596-13034615 None:intergenic 50.0%
ACGCATTGTCGTCAGCTTAG+TGG - chr3_1:13034813-13034832 None:intergenic 50.0%
CTGACGACAATGCGTGTGTT+TGG + chr3_1:13034818-13034837 Msa0349450:intron 50.0%
GGTAAGACTAGGCATGGCAA+TGG + chr3_1:13034839-13034858 Msa0349450:intron 50.0%
TGAGAATCGGGTATGGAGAC+GGG - chr3_1:13034892-13034911 None:intergenic 50.0%
TTGGGTATGGGTAGGGTAAC+GGG - chr3_1:13034923-13034942 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAA+CGG - chr3_1:13034924-13034943 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG + chr3_1:13034923-13034942 Msa0349450:intron 50.0%
TTACCCTACCCATACCCAAC+GGG + chr3_1:13034924-13034943 Msa0349450:intron 50.0%
TTCTCATCCCCGTTGGGTAT+GGG - chr3_1:13034935-13034954 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG - chr3_1:13034936-13034955 None:intergenic 50.0%
! ATTTGGGACGGGTTTGGGTA+TGG + chr3_1:13035222-13035241 Msa0349450:intron 50.0%
! TTTGGGACGGGTTTGGGTAT+GGG + chr3_1:13035223-13035242 Msa0349450:intron 50.0%
ACGGGTATGGAATGGGTAAC+GGG - chr3_1:13035270-13035289 None:intergenic 50.0%
CACGGGTATGGAATGGGTAA+CGG - chr3_1:13035271-13035290 None:intergenic 50.0%
CTGGGTTTGGGTATGGGTAT+GGG - chr3_1:13035312-13035331 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTA+TGG - chr3_1:13035313-13035332 None:intergenic 50.0%
ACCCAAACCCAGTCAAAACG+GGG + chr3_1:13035320-13035339 Msa0349450:intron 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG - chr3_1:13035324-13035343 None:intergenic 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG - chr3_1:13035325-13035344 None:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG - chr3_1:13035330-13035349 None:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG + chr3_1:13035337-13035356 Msa0349450:intron 50.0%
CGGGGAAAACCCGTCAAATT+GGG + chr3_1:13035338-13035357 Msa0349450:intron 50.0%
!! GTTCAGGTAGAGTTGGTGGA+AGG + chr3_1:13035891-13035910 Msa0349450:intron 50.0%
CAGAGCTTGACCCAGAGAAA+AGG + chr3_1:13036009-13036028 Msa0349450:CDS 50.0%
GCATTCTCGTTTGGCTATGG+TGG + chr3_1:13036118-13036137 Msa0349450:CDS 50.0%
GAAATGTTAACGAGTGCCCC+CGG + chr3_1:13036473-13036492 Msa0349450:three_prime_UTR 50.0%
AAATGTTAACGAGTGCCCCC+GGG + chr3_1:13036474-13036493 Msa0349450:three_prime_UTR 50.0%
!! TAAGGGCTTAAAGAGTGCCC+CGG - chr3_1:13036495-13036514 None:intergenic 50.0%
TGACTGTGAGGAGAAGGGAG+TGG - chr3_1:13032705-13032724 None:intergenic 55.0%
GTGTGTCGGAGGGACAAAGT+GGG - chr3_1:13032765-13032784 None:intergenic 55.0%
!! AAAATGCGACATGGTGGCGG+CGG - chr3_1:13032832-13032851 None:intergenic 55.0%
!! GATGGGCTAGTGTGGTTTCC+CGG + chr3_1:13032978-13032997 Msa0349450:CDS 55.0%
ATCGTCCCATCGAGCCATTC+CGG - chr3_1:13033014-13033033 None:intergenic 55.0%
TGGCTCGATGGGACGATGAT+AGG + chr3_1:13033017-13033036 Msa0349450:CDS 55.0%
! GACTAGGGTGGAGAGTACAG+AGG + chr3_1:13033151-13033170 Msa0349450:CDS 55.0%
GTGTACGGCTGAAACGGTGT+AGG - chr3_1:13033182-13033201 None:intergenic 55.0%
ACCTCCGTGTACGGCTGAAA+CGG - chr3_1:13033188-13033207 None:intergenic 55.0%
! CAGCCGTACACGGAGGTTTT+TGG + chr3_1:13033191-13033210 Msa0349450:CDS 55.0%
!! TGGGCTATGCTTGGTGCTCT+TGG + chr3_1:13033254-13033273 Msa0349450:CDS 55.0%
!! GCTTGGTGCTCTTGGTGCTT+TGG + chr3_1:13033262-13033281 Msa0349450:CDS 55.0%
CGCATGGCAAGATGCTGGAA+AGG + chr3_1:13033307-13033326 Msa0349450:CDS 55.0%
CTCCGTGAACGTAGCTCACT+TGG - chr3_1:13033894-13033913 None:intergenic 55.0%
GAGAATCGGGTATGGAGACG+GGG - chr3_1:13034891-13034910 None:intergenic 55.0%
TACCCTACCCATACCCAACG+GGG + chr3_1:13034925-13034944 Msa0349450:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG - chr3_1:13034930-13034949 None:intergenic 55.0%
TTCAATGCGGGGATGGGGAT+GGG - chr3_1:13035001-13035020 None:intergenic 55.0%
ATTCAATGCGGGGATGGGGA+TGG - chr3_1:13035002-13035021 None:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+CGG + chr3_1:13035228-13035247 Msa0349450:intron 55.0%
ACGGGTTTGGGTATGGGTTC+GGG + chr3_1:13035229-13035248 Msa0349450:intron 55.0%
TTTGGGTATGGGTTCGGGGT+GGG + chr3_1:13035234-13035253 Msa0349450:intron 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG - chr3_1:13035331-13035350 None:intergenic 55.0%
GGCAACAAAACCCATACCCG+CGG - chr3_1:13035382-13035401 None:intergenic 55.0%
GGATCACTGGCCAAACCAAG+AGG - chr3_1:13036062-13036081 None:intergenic 55.0%
AATGTTAACGAGTGCCCCCG+GGG + chr3_1:13036475-13036494 Msa0349450:three_prime_UTR 55.0%
!! AAGGGCTTAAAGAGTGCCCC+GGG - chr3_1:13036494-13036513 None:intergenic 55.0%
GGTGTGTCGGAGGGACAAAG+TGG - chr3_1:13032766-13032785 None:intergenic 60.0%
AGCCACCGGAATGGCTCGAT+GGG + chr3_1:13033006-13033025 Msa0349450:CDS 60.0%
GGGACGATGATAGGTGACCG+TGG + chr3_1:13033026-13033045 Msa0349450:CDS 60.0%
ACCGTTTCAGCCGTACACGG+AGG + chr3_1:13033184-13033203 Msa0349450:CDS 60.0%
! GGTGTCGCATGGCAAGATGC+TGG + chr3_1:13033302-13033321 Msa0349450:CDS 60.0%
GACTAGGCATGGCAATGGGG+CGG + chr3_1:13034844-13034863 Msa0349450:intron 60.0%
ACTAGGCATGGCAATGGGGC+GGG + chr3_1:13034845-13034864 Msa0349450:intron 60.0%
ATCGGGTATGGAGACGGGGA+AGG - chr3_1:13034887-13034906 None:intergenic 60.0%
CATCCCCGTTGGGTATGGGT+AGG - chr3_1:13034931-13034950 None:intergenic 60.0%
AATCTCATCCCCGTCCCCGA+CGG + chr3_1:13034959-13034978 Msa0349450:intron 60.0%
TCAATGCGGGGATGGGGATG+GGG - chr3_1:13035000-13035019 None:intergenic 60.0%
CGGGTTTGGGTATGGGTTCG+GGG + chr3_1:13035230-13035249 Msa0349450:intron 60.0%
GTTTGGGTATGGGTTCGGGG+TGG + chr3_1:13035233-13035252 Msa0349450:intron 60.0%
! TTGGTTCGAGCGGGTAACCG+CGG + chr3_1:13035362-13035381 Msa0349450:intron 60.0%
!! AGGGCTTAAAGAGTGCCCCG+GGG - chr3_1:13036493-13036512 None:intergenic 60.0%
GGTTGCGGTGGTTGCCATGG+TGG - chr3_1:13032811-13032830 None:intergenic 65.0%
GTTTCCCGGTGCTCAGCCAC+CGG + chr3_1:13032992-13033011 Msa0349450:CDS 65.0%
CATTCCGGTGGCTGAGCACC+GGG - chr3_1:13032999-13033018 None:intergenic 65.0%
CCATTCCGGTGGCTGAGCAC+CGG - chr3_1:13033000-13033019 None:intergenic 65.0%
CAGCCACCGGAATGGCTCGA+TGG + chr3_1:13033005-13033024 Msa0349450:CDS 65.0%
GTCCCATCGAGCCATTCCGG+TGG - chr3_1:13033011-13033030 None:intergenic 65.0%
CTAGGCATGGCAATGGGGCG+GGG + chr3_1:13034846-13034865 Msa0349450:intron 65.0%
ATCTCATCCCCGTCCCCGAC+GGG + chr3_1:13034960-13034979 Msa0349450:intron 65.0%
ATACCCGAACCCGTCGGGGA+CGG - chr3_1:13034972-13034991 None:intergenic 65.0%
TGGTTCGAGCGGGTAACCGC+GGG + chr3_1:13035363-13035382 Msa0349450:intron 65.0%
GAGCGGGTAACCGCGGGTAT+GGG + chr3_1:13035369-13035388 Msa0349450:intron 65.0%
!! GGGCTTAAAGAGTGCCCCGG+GGG - chr3_1:13036492-13036511 None:intergenic 65.0%
GGCGGTTGCGGTGGTTGCCA+TGG - chr3_1:13032814-13032833 None:intergenic 70.0%
!! CGACATGGTGGCGGCGGTTG+CGG - chr3_1:13032826-13032845 None:intergenic 70.0%
CCGGTGCTCAGCCACCGGAA+TGG + chr3_1:13032997-13033016 Msa0349450:CDS 70.0%
GCATGGCAATGGGGCGGGGT+GGG + chr3_1:13034850-13034869 Msa0349450:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG + chr3_1:13034851-13034870 Msa0349450:intron 70.0%
! ATCCCCGTCCCCGACGGGTT+CGG + chr3_1:13034965-13034984 Msa0349450:intron 70.0%
TACCCGAACCCGTCGGGGAC+GGG - chr3_1:13034971-13034990 None:intergenic 70.0%
GGGGATACCCGAACCCGTCG+GGG - chr3_1:13034976-13034995 None:intergenic 70.0%
CGGGGATACCCGAACCCGTC+GGG - chr3_1:13034977-13034996 None:intergenic 70.0%
GCGGGGATACCCGAACCCGT+CGG - chr3_1:13034978-13034997 None:intergenic 70.0%
ATGCGGGGATGGGGATGGGG+CGG - chr3_1:13034997-13035016 None:intergenic 70.0%
CGAGCGGGTAACCGCGGGTA+TGG + chr3_1:13035368-13035387 Msa0349450:intron 70.0%
!! CATGGTGGCGGCGGTTGCGG+TGG - chr3_1:13032823-13032842 None:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG + chr3_1:13034849-13034868 Msa0349450:intron 75.0%
GCAATGGGGCGGGGTGGGGA+CGG + chr3_1:13034855-13034874 Msa0349450:intron 75.0%
CAATGGGGCGGGGTGGGGAC+GGG + chr3_1:13034856-13034875 Msa0349450:intron 75.0%
! TCCCCGTCCCCGACGGGTTC+GGG + chr3_1:13034966-13034985 Msa0349450:intron 75.0%
ACCCGAACCCGTCGGGGACG+GGG - chr3_1:13034970-13034989 None:intergenic 75.0%
TGCGGGGATGGGGATGGGGC+GGG - chr3_1:13034996-13035015 None:intergenic 75.0%
! GCGGGGATGGGGATGGGGCG+GGG - chr3_1:13034995-13035014 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 13032653 13036523 13032653 ID=Msa0349450;Name=Msa0349450
chr3_1 mRNA 13032653 13036523 13032653 ID=Msa0349450-mRNA-1;Parent=Msa0349450;Name=Msa0349450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=160|1|1|1|1|1|2|306|278
chr3_1 exon 13032653 13033328 13032653 ID=Msa0349450-mRNA-1:exon:3322;Parent=Msa0349450-mRNA-1
chr3_1 exon 13035897 13036523 13035897 ID=Msa0349450-mRNA-1:exon:3323;Parent=Msa0349450-mRNA-1
chr3_1 five_prime_UTR 13032653 13032812 13032653 ID=Msa0349450-mRNA-1:five_prime_utr;Parent=Msa0349450-mRNA-1
chr3_1 CDS 13032813 13033328 13032813 ID=Msa0349450-mRNA-1:cds;Parent=Msa0349450-mRNA-1
chr3_1 CDS 13035897 13036217 13035897 ID=Msa0349450-mRNA-1:cds;Parent=Msa0349450-mRNA-1
chr3_1 three_prime_UTR 13036218 13036523 13036218 ID=Msa0349450-mRNA-1:three_prime_utr;Parent=Msa0349450-mRNA-1
Gene Sequence

>Msa0349450

ATGGCAACCACCGCAACCGCCGCCACCATGTCGCATTTTTTCGGCACTAGTCTCTGCAAACCAACCTCAAACATGGGAAGAGTTCGTGCCTTCTTCAACCTAGGTACTAAGTTAAAGCCAGCACCTAAGAAAAAGGAAGTGAAAAAAGTAAGAAAACAAGAAAGTGATGGGCTAGTGTGGTTTCCCGGTGCTCAGCCACCGGAATGGCTCGATGGGACGATGATAGGTGACCGTGGTTTTGATCCATTGGGATTAGCCAAACCTGTTGAGTATCTGCAATTTGATCTTGACTCACTTGACCAGAATTTGGCTAAGAACCTTGCAGGTGATATTATTGGGACTAGGGTGGAGAGTACAGAGGTTAACCCTACACCGTTTCAGCCGTACACGGAGGTTTTTGGGATTCAGAGGTTTCGTGAGTGTGAGGTTATTCATGGAAGATGGGCTATGCTTGGTGCTCTTGGTGCTTTGGCTGTTGAAGCTTTCACTGGTGTCGCATGGCAAGATGCTGGAAAGGTAGAGTTGGTGGAAGGATCATCCTACTTTGGATTTTCTCTTCCATTCTCAATTAGCACATTGATATGGATTGAAGTACTAGTAATTGGCTACATTGAGTTTCAAAGGAATGCAGAGCTTGACCCAGAGAAAAGGTTATACCCAGGTGGAAAATTCTTTGATCCTCTTGGTTTGGCCAGTGATCCTGAAGAGAAAGAAAGACTTCAACTTGCAGAGATTAAGCATTCTCGTTTGGCTATGGTGGTTTTCCTCATCTTTGCAATTCAAGCTGCTGTTACAGGAAAAGGACCTATTGGTTTCATTGCTACCTTCAACCAGTGA

Protein sequence

>Msa0349450

MATTATAATMSHFFGTSLCKPTSNMGRVRAFFNLGTKLKPAPKKKEVKKVRKQESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVESTEVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGFSLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPIGFIATFNQ*