AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0631350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631350 MtrunA17_Chr4g0008801 94.479 163 3 1 1 157 1 163 2.83e-110 310
Msa0631350 MtrunA17_Chr7g0240701 67.516 157 45 1 1 151 1 157 3.36e-77 227
Msa0631350 MtrunA17_Chr4g0032261 60.123 163 59 1 1 157 1 163 9.79e-68 202
Msa0631350 MtrunA17_Chr5g0433951 53.086 162 70 1 1 156 1 162 2.83e-54 169
Msa0631350 MtrunA17_Chr2g0294421 44.375 160 83 1 1 154 1 160 2.20e-42 138
Msa0631350 MtrunA17_Chr5g0427291 36.207 174 79 7 9 158 12 177 3.86e-21 84.7
Msa0631350 MtrunA17_Chr1g0194801 35.404 161 84 6 3 151 4 156 2.77e-18 76.6
Msa0631350 MtrunA17_Chr1g0192651 33.333 159 94 4 5 157 9 161 2.20e-17 74.7
Msa0631350 MtrunA17_Chr4g0001641 47.692 65 34 0 94 158 8 72 2.64e-16 69.3
Msa0631350 MtrunA17_Chr1g0176321 30.178 169 99 4 9 158 7 175 3.74e-16 71.6
Msa0631350 MtrunA17_Chr6g0464761 73.171 41 11 0 89 129 12 52 1.04e-15 68.2
Msa0631350 MtrunA17_Chr1g0176311 29.091 165 100 3 9 158 26 188 2.17e-15 70.1
Msa0631350 MtrunA17_Chr6g0450171 27.211 147 102 3 14 157 24 168 3.13e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631350 AT3G53990.1 71.698 159 39 1 1 153 1 159 1.50e-81 238
Msa0631350 AT3G03270.2 56.604 159 63 1 1 153 1 159 7.13e-56 173
Msa0631350 AT3G17020.1 47.403 154 74 2 5 151 7 160 2.44e-48 154
Msa0631350 AT3G53990.2 68.367 98 25 1 1 92 1 98 1.37e-40 133
Msa0631350 AT3G03270.1 52.593 135 58 1 1 129 1 135 1.21e-39 133
Msa0631350 AT1G09740.2 33.333 159 96 3 9 157 12 170 6.21e-20 81.6
Msa0631350 AT1G09740.1 33.333 159 96 3 9 157 12 170 6.21e-20 81.6
Msa0631350 AT3G17020.2 42.857 91 45 2 5 88 7 97 1.75e-18 76.6
Msa0631350 AT3G58450.2 32.075 159 93 2 9 157 34 187 2.78e-18 78.2
Msa0631350 AT3G62550.1 34.839 155 98 2 3 154 5 159 1.44e-17 75.5
Msa0631350 AT3G58450.1 30.909 165 94 3 9 157 34 194 3.02e-17 75.5
Msa0631350 AT3G11930.1 29.448 163 102 2 9 158 37 199 6.79e-15 69.3
Msa0631350 AT3G11930.4 29.091 165 102 2 9 158 37 201 1.23e-14 68.6
Msa0631350 AT1G68300.1 29.730 148 103 1 5 151 10 157 1.43e-14 67.4
Msa0631350 AT3G11930.2 29.878 164 101 2 9 158 37 200 1.66e-14 68.2
Msa0631350 AT1G11360.2 29.448 163 92 6 5 151 38 193 1.88e-12 63.2
Msa0631350 AT1G11360.1 29.448 163 92 6 5 151 38 193 1.88e-12 63.2
Msa0631350 AT1G11360.4 29.448 163 92 6 5 151 38 193 1.88e-12 63.2
Msa0631350 AT1G11360.3 29.448 163 92 6 5 151 38 193 1.88e-12 63.2
Msa0631350 AT3G01520.1 27.632 152 95 4 14 157 24 168 2.80e-11 58.9
Msa0631350 AT5G14680.1 27.742 155 91 4 14 157 24 168 3.70e-11 58.9

Find 37 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGATGAGTAATAAATTT+TGG 0.148958 4_3:+14261699 None:intergenic
TCTCATGAACAGGATATTAT+TGG 0.270931 4_3:-14261988 Msa0631350:intron
TTTGTGATAGCATTTAAATT+TGG 0.273144 4_3:-14261863 Msa0631350:three_prime_UTR
GATTATAAATTCTGACTATC+TGG 0.277037 4_3:-14261776 Msa0631350:three_prime_UTR
CAGAGCATTCTTGCTGCTCT+TGG 0.307367 4_3:+14263992 None:intergenic
GTTGAGAAAAGAAAAGAATA+AGG 0.307419 4_3:+14264082 None:intergenic
GAAGCTGGATTCTCTTGTTA+TGG 0.310746 4_3:-14263215 Msa0631350:CDS
TATTGTTACAAAAGTGTATT+GGG 0.331126 4_3:-14263278 Msa0631350:CDS
TAGAACAATTGGTGTGGCTT+TGG 0.333421 4_3:-14264021 Msa0631350:CDS
CTTGAGAATTTAGCTGATAA+AGG 0.345536 4_3:-14263960 Msa0631350:CDS
AAGCTGGATTCTCTTGTTAT+GGG 0.360643 4_3:-14263214 Msa0631350:CDS
GCAGCAAGAATGCTCTGAAA+TGG 0.370068 4_3:-14263986 Msa0631350:CDS
ATTCTCTTGTTATGGGTAGC+AGG 0.383547 4_3:-14263207 Msa0631350:CDS
CCATACTTCTTCATTATCTC+TGG 0.389368 4_3:+14263444 None:intergenic
ATGGCAAAAGATAGAACAAT+TGG 0.405644 4_3:-14264032 Msa0631350:CDS
GTACTTACGAGAACCATCTT+TGG 0.412789 4_3:+14263872 None:intergenic
ATGAAGCTCGTAATCAGTTA+TGG 0.420885 4_3:-14263896 Msa0631350:CDS
TTCTCTTGTTATGGGTAGCA+GGG 0.424515 4_3:-14263206 Msa0631350:CDS
CTCATGAACAGGATATTATT+GGG 0.428627 4_3:-14261987 Msa0631350:intron
ATATTGTTACAAAAGTGTAT+TGG 0.434652 4_3:-14263279 Msa0631350:CDS
CCAGAGATAATGAAGAAGTA+TGG 0.442632 4_3:-14263444 Msa0631350:CDS
CAGCAAGAATGCTCTGAAAT+GGG 0.466495 4_3:-14263985 Msa0631350:CDS
TGAAGCTCGTAATCAGTTAT+GGG 0.466658 4_3:-14263895 Msa0631350:CDS
TGATGCAAGAGAGAAACTTA+TGG 0.472999 4_3:-14263254 Msa0631350:CDS
TGCTGTTGAAGATCTGAAGC+TGG 0.501707 4_3:-14263230 Msa0631350:CDS
AGTCACTGGGCAAGGAGCAT+TGG 0.516295 4_3:+14261941 None:intergenic
TTATCCTTGACAATAGTCAC+TGG 0.518152 4_3:+14261927 None:intergenic
GGGGTCTCAGCACAATTCAA+AGG 0.550843 4_3:-14263186 Msa0631350:intron
TTGACAATAGTCACTGGGCA+AGG 0.566118 4_3:+14261933 None:intergenic
AATCAGTTATGGGCCAAAGA+TGG 0.569005 4_3:-14263885 Msa0631350:CDS
TCTCTTGTTATGGGTAGCAG+GGG 0.589338 4_3:-14263205 Msa0631350:CDS
TGGTGTTCAGATTGATATCG+AGG 0.609478 4_3:-14263424 Msa0631350:CDS
TTGCCCAGTGACTATTGTCA+AGG 0.614312 4_3:-14261931 Msa0631350:CDS
CAAGAGAATCATGACTGATG+TGG 0.615035 4_3:+14263919 None:intergenic
ATTGTTACAAAAGTGTATTG+GGG 0.627971 4_3:-14263277 Msa0631350:CDS
TATCCTTGACAATAGTCACT+GGG 0.636411 4_3:+14261928 None:intergenic
AAAAGATAGAACAATTGGTG+TGG 0.650098 4_3:-14264027 Msa0631350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAATAATTATTGATTTTT+AGG - chr4_3:14262510-14262529 Msa0631350:intron 10.0%
!!! TGTAATAATTATTGATTTTT+AGG - chr4_3:14262510-14262529 Msa0631350:intron 10.0%
!! AAAAATTAACGAAAAATGAA+TGG + chr4_3:14261968-14261987 None:intergenic 15.0%
!! TCAAATTAACAATATAAGAT+CGG + chr4_3:14262022-14262041 None:intergenic 15.0%
!! AAAACATTAAACACAAAATT+AGG + chr4_3:14262681-14262700 None:intergenic 15.0%
!!! AATTTTGTGTTTAATGTTTT+TGG - chr4_3:14262681-14262700 Msa0631350:intron 15.0%
!!! ATTTTGTGTTTAATGTTTTT+GGG - chr4_3:14262682-14262701 Msa0631350:intron 15.0%
!!! TTCTCAAATTAATGTTATTT+TGG - chr4_3:14263351-14263370 Msa0631350:intron 15.0%
!!! GATATTTGTAAAATTGATTT+TGG + chr4_3:14263540-14263559 None:intergenic 15.0%
!! AAAAATTAACGAAAAATGAA+TGG + chr4_3:14261968-14261987 None:intergenic 15.0%
!! TCAAATTAACAATATAAGAT+CGG + chr4_3:14262022-14262041 None:intergenic 15.0%
!! AAAACATTAAACACAAAATT+AGG + chr4_3:14262681-14262700 None:intergenic 15.0%
!!! AATTTTGTGTTTAATGTTTT+TGG - chr4_3:14262681-14262700 Msa0631350:intron 15.0%
!!! ATTTTGTGTTTAATGTTTTT+GGG - chr4_3:14262682-14262701 Msa0631350:intron 15.0%
!!! TTCTCAAATTAATGTTATTT+TGG - chr4_3:14263351-14263370 Msa0631350:intron 15.0%
!!! GATATTTGTAAAATTGATTT+TGG + chr4_3:14263540-14263559 None:intergenic 15.0%
!! AATGTAATTCTTAGAAATCA+TGG - chr4_3:14262128-14262147 Msa0631350:intron 20.0%
!!! ATATTGTTACAAAAGTGTAT+TGG - chr4_3:14262536-14262555 Msa0631350:intron 20.0%
!!! TATTGTTACAAAAGTGTATT+GGG - chr4_3:14262537-14262556 Msa0631350:intron 20.0%
!!! TTTATAGCTTTACAAAATCA+GGG - chr4_3:14262984-14263003 Msa0631350:intron 20.0%
!! TAGATAGAAACTACAATTTA+TGG + chr4_3:14263184-14263203 None:intergenic 20.0%
!! ATTAAGATAAATTGAGTTTG+GGG + chr4_3:14263294-14263313 None:intergenic 20.0%
!! CATTAAGATAAATTGAGTTT+GGG + chr4_3:14263295-14263314 None:intergenic 20.0%
!! ACATTAAGATAAATTGAGTT+TGG + chr4_3:14263296-14263315 None:intergenic 20.0%
!!! TGAATTGATAATGTATTCAT+AGG + chr4_3:14263754-14263773 None:intergenic 20.0%
!! TTTGTGATAGCATTTAAATT+TGG - chr4_3:14263952-14263971 Msa0631350:CDS 20.0%
!! AATGTAATTCTTAGAAATCA+TGG - chr4_3:14262128-14262147 Msa0631350:intron 20.0%
!!! ATATTGTTACAAAAGTGTAT+TGG - chr4_3:14262536-14262555 Msa0631350:intron 20.0%
!!! TATTGTTACAAAAGTGTATT+GGG - chr4_3:14262537-14262556 Msa0631350:intron 20.0%
!!! TTTATAGCTTTACAAAATCA+GGG - chr4_3:14262984-14263003 Msa0631350:intron 20.0%
!! TAGATAGAAACTACAATTTA+TGG + chr4_3:14263184-14263203 None:intergenic 20.0%
!! ATTAAGATAAATTGAGTTTG+GGG + chr4_3:14263294-14263313 None:intergenic 20.0%
!! CATTAAGATAAATTGAGTTT+GGG + chr4_3:14263295-14263314 None:intergenic 20.0%
!! ACATTAAGATAAATTGAGTT+TGG + chr4_3:14263296-14263315 None:intergenic 20.0%
!!! TGAATTGATAATGTATTCAT+AGG + chr4_3:14263754-14263773 None:intergenic 20.0%
!! TTTGTGATAGCATTTAAATT+TGG - chr4_3:14263952-14263971 Msa0631350:CDS 20.0%
! GTTGAGAAAAGAAAAGAATA+AGG + chr4_3:14261736-14261755 None:intergenic 25.0%
! TCATCATTCACAAACAAAAA+TGG - chr4_3:14261764-14261783 Msa0631350:three_prime_UTR 25.0%
! TAATTCTTAGAAATCATGGT+TGG - chr4_3:14262132-14262151 Msa0631350:intron 25.0%
! AATTCTTAGAAATCATGGTT+GGG - chr4_3:14262133-14262152 Msa0631350:intron 25.0%
!!! TCTGCATTTTAATTTAGACA+AGG - chr4_3:14262466-14262485 Msa0631350:intron 25.0%
!! AATTTAGACAAGGATGTTTT+AGG - chr4_3:14262476-14262495 Msa0631350:intron 25.0%
!! ATTGTTACAAAAGTGTATTG+GGG - chr4_3:14262538-14262557 Msa0631350:intron 25.0%
! AACACAAAATTAGGAAGTTA+AGG + chr4_3:14262672-14262691 None:intergenic 25.0%
!!! TATGATTGATTGATGATGAA+AGG + chr4_3:14262710-14262729 None:intergenic 25.0%
! AGAAAATGAATTACATCATG+TGG - chr4_3:14262741-14262760 Msa0631350:intron 25.0%
! GAAAATGAATTACATCATGT+GGG - chr4_3:14262742-14262761 Msa0631350:intron 25.0%
! AAAATGAATTACATCATGTG+GGG - chr4_3:14262743-14262762 Msa0631350:intron 25.0%
! AATTCTACAAACTTAAGCTT+TGG + chr4_3:14262802-14262821 None:intergenic 25.0%
! TTACATGATAGATATACGAT+TGG - chr4_3:14262842-14262861 Msa0631350:intron 25.0%
!! GTTTATAGCTTTACAAAATC+AGG - chr4_3:14262983-14263002 Msa0631350:intron 25.0%
! AACTTATTGCTTGTTTGATT+TGG - chr4_3:14263105-14263124 Msa0631350:intron 25.0%
!! ACTTATTGCTTGTTTGATTT+GGG - chr4_3:14263106-14263125 Msa0631350:intron 25.0%
! ATTAAGATCTTGTAGTGAAA+GGG + chr4_3:14263731-14263750 None:intergenic 25.0%
!!! CATCAAAATATTTGTTGTGA+TGG - chr4_3:14263772-14263791 Msa0631350:intron 25.0%
! GATTATAAATTCTGACTATC+TGG - chr4_3:14264039-14264058 Msa0631350:exon 25.0%
! GTTGAGAAAAGAAAAGAATA+AGG + chr4_3:14261736-14261755 None:intergenic 25.0%
! TCATCATTCACAAACAAAAA+TGG - chr4_3:14261764-14261783 Msa0631350:three_prime_UTR 25.0%
! TAATTCTTAGAAATCATGGT+TGG - chr4_3:14262132-14262151 Msa0631350:intron 25.0%
! AATTCTTAGAAATCATGGTT+GGG - chr4_3:14262133-14262152 Msa0631350:intron 25.0%
!!! TCTGCATTTTAATTTAGACA+AGG - chr4_3:14262466-14262485 Msa0631350:intron 25.0%
!! AATTTAGACAAGGATGTTTT+AGG - chr4_3:14262476-14262495 Msa0631350:intron 25.0%
!! ATTGTTACAAAAGTGTATTG+GGG - chr4_3:14262538-14262557 Msa0631350:intron 25.0%
! AACACAAAATTAGGAAGTTA+AGG + chr4_3:14262672-14262691 None:intergenic 25.0%
!!! TATGATTGATTGATGATGAA+AGG + chr4_3:14262710-14262729 None:intergenic 25.0%
! AGAAAATGAATTACATCATG+TGG - chr4_3:14262741-14262760 Msa0631350:intron 25.0%
! GAAAATGAATTACATCATGT+GGG - chr4_3:14262742-14262761 Msa0631350:intron 25.0%
! AAAATGAATTACATCATGTG+GGG - chr4_3:14262743-14262762 Msa0631350:intron 25.0%
! AATTCTACAAACTTAAGCTT+TGG + chr4_3:14262802-14262821 None:intergenic 25.0%
! TTACATGATAGATATACGAT+TGG - chr4_3:14262842-14262861 Msa0631350:intron 25.0%
!! GTTTATAGCTTTACAAAATC+AGG - chr4_3:14262983-14263002 Msa0631350:intron 25.0%
! AACTTATTGCTTGTTTGATT+TGG - chr4_3:14263105-14263124 Msa0631350:intron 25.0%
!! ACTTATTGCTTGTTTGATTT+GGG - chr4_3:14263106-14263125 Msa0631350:intron 25.0%
! ATTAAGATCTTGTAGTGAAA+GGG + chr4_3:14263731-14263750 None:intergenic 25.0%
!!! CATCAAAATATTTGTTGTGA+TGG - chr4_3:14263772-14263791 Msa0631350:intron 25.0%
! GATTATAAATTCTGACTATC+TGG - chr4_3:14264039-14264058 Msa0631350:exon 25.0%
ATGGCAAAAGATAGAACAAT+TGG - chr4_3:14261783-14261802 Msa0631350:three_prime_UTR 30.0%
AAAAGATAGAACAATTGGTG+TGG - chr4_3:14261788-14261807 Msa0631350:three_prime_UTR 30.0%
CTTGAGAATTTAGCTGATAA+AGG - chr4_3:14261855-14261874 Msa0631350:three_prime_UTR 30.0%
!! ACTCATAAACCGATTTTGTA+GGG + chr4_3:14262169-14262188 None:intergenic 30.0%
!! AACTCATAAACCGATTTTGT+AGG + chr4_3:14262170-14262189 None:intergenic 30.0%
!!! CACTTTTTCAAGACAAAAAG+AGG - chr4_3:14262430-14262449 Msa0631350:intron 30.0%
!!! TAAATGTGATTTTTAGGTGG+TGG + chr4_3:14263060-14263079 None:intergenic 30.0%
!! ACGTAAATGTGATTTTTAGG+TGG + chr4_3:14263063-14263082 None:intergenic 30.0%
! CCAACGTAAATGTGATTTTT+AGG + chr4_3:14263066-14263085 None:intergenic 30.0%
CCTAAAAATCACATTTACGT+TGG - chr4_3:14263063-14263082 Msa0631350:intron 30.0%
!! CTTATTGCTTGTTTGATTTG+GGG - chr4_3:14263107-14263126 Msa0631350:intron 30.0%
! TGATTTTATGTCACTGCAAA+AGG + chr4_3:14263330-14263349 None:intergenic 30.0%
!! AATATCTATCTGAGTACTGA+AGG - chr4_3:14263691-14263710 Msa0631350:intron 30.0%
GATTAAGATCTTGTAGTGAA+AGG + chr4_3:14263732-14263751 None:intergenic 30.0%
AAAATTTGAGTCTCATGAAC+AGG - chr4_3:14263817-14263836 Msa0631350:intron 30.0%
TCTCATGAACAGGATATTAT+TGG - chr4_3:14263827-14263846 Msa0631350:intron 30.0%
CTCATGAACAGGATATTATT+GGG - chr4_3:14263828-14263847 Msa0631350:intron 30.0%
ATGGCAAAAGATAGAACAAT+TGG - chr4_3:14261783-14261802 Msa0631350:three_prime_UTR 30.0%
AAAAGATAGAACAATTGGTG+TGG - chr4_3:14261788-14261807 Msa0631350:three_prime_UTR 30.0%
CTTGAGAATTTAGCTGATAA+AGG - chr4_3:14261855-14261874 Msa0631350:three_prime_UTR 30.0%
!! ACTCATAAACCGATTTTGTA+GGG + chr4_3:14262169-14262188 None:intergenic 30.0%
!! AACTCATAAACCGATTTTGT+AGG + chr4_3:14262170-14262189 None:intergenic 30.0%
!!! CACTTTTTCAAGACAAAAAG+AGG - chr4_3:14262430-14262449 Msa0631350:intron 30.0%
!!! TAAATGTGATTTTTAGGTGG+TGG + chr4_3:14263060-14263079 None:intergenic 30.0%
!! ACGTAAATGTGATTTTTAGG+TGG + chr4_3:14263063-14263082 None:intergenic 30.0%
! CCAACGTAAATGTGATTTTT+AGG + chr4_3:14263066-14263085 None:intergenic 30.0%
CCTAAAAATCACATTTACGT+TGG - chr4_3:14263063-14263082 Msa0631350:intron 30.0%
!! CTTATTGCTTGTTTGATTTG+GGG - chr4_3:14263107-14263126 Msa0631350:intron 30.0%
! TGATTTTATGTCACTGCAAA+AGG + chr4_3:14263330-14263349 None:intergenic 30.0%
!! AATATCTATCTGAGTACTGA+AGG - chr4_3:14263691-14263710 Msa0631350:intron 30.0%
GATTAAGATCTTGTAGTGAA+AGG + chr4_3:14263732-14263751 None:intergenic 30.0%
AAAATTTGAGTCTCATGAAC+AGG - chr4_3:14263817-14263836 Msa0631350:intron 30.0%
TCTCATGAACAGGATATTAT+TGG - chr4_3:14263827-14263846 Msa0631350:intron 30.0%
CTCATGAACAGGATATTATT+GGG - chr4_3:14263828-14263847 Msa0631350:intron 30.0%
ATGAAGCTCGTAATCAGTTA+TGG - chr4_3:14261919-14261938 Msa0631350:CDS 35.0%
TGAAGCTCGTAATCAGTTAT+GGG - chr4_3:14261920-14261939 Msa0631350:CDS 35.0%
CTAACACAACCCTACAAAAT+CGG - chr4_3:14262157-14262176 Msa0631350:intron 35.0%
GCTATCAGATTTCTGTTATC+AGG + chr4_3:14262231-14262250 None:intergenic 35.0%
GATAACAGAAATCTGATAGC+AGG - chr4_3:14262231-14262250 Msa0631350:intron 35.0%
CCATACTTCTTCATTATCTC+TGG + chr4_3:14262374-14262393 None:intergenic 35.0%
CCAGAGATAATGAAGAAGTA+TGG - chr4_3:14262371-14262390 Msa0631350:intron 35.0%
TGATGCAAGAGAGAAACTTA+TGG - chr4_3:14262561-14262580 Msa0631350:intron 35.0%
! AAGCTGGATTCTCTTGTTAT+GGG - chr4_3:14262601-14262620 Msa0631350:intron 35.0%
!!! GTTTGTTTTGGAGTGTAAGT+TGG - chr4_3:14262765-14262784 Msa0631350:intron 35.0%
TGGTGAGATTGACAAAATCA+CGG - chr4_3:14262896-14262915 Msa0631350:intron 35.0%
! ATAGCTTTACAAAATCAGGG+TGG - chr4_3:14262987-14263006 Msa0631350:intron 35.0%
ATAGTGAGATCGAACAATCA+CGG + chr4_3:14263017-14263036 None:intergenic 35.0%
TTCATAAGTTCACAGCAGAA+TGG + chr4_3:14263160-14263179 None:intergenic 35.0%
GCTAGAATCAATTATAGGAC+TGG + chr4_3:14263272-14263291 None:intergenic 35.0%
TTGGGGCTAGAATCAATTAT+AGG + chr4_3:14263277-14263296 None:intergenic 35.0%
!! TGGATTGAAAGTGTAGCTTT+TGG - chr4_3:14263391-14263410 Msa0631350:CDS 35.0%
! TGTCGTTAAATCTGATGATG+AGG - chr4_3:14263599-14263618 Msa0631350:intron 35.0%
! GTCGTTAAATCTGATGATGA+GGG - chr4_3:14263600-14263619 Msa0631350:intron 35.0%
!!! CATATAGAAGAGCGTCTTTT+AGG - chr4_3:14263642-14263661 Msa0631350:intron 35.0%
TATCCTTGACAATAGTCACT+GGG + chr4_3:14263890-14263909 None:intergenic 35.0%
TTATCCTTGACAATAGTCAC+TGG + chr4_3:14263891-14263910 None:intergenic 35.0%
ATGAAGCTCGTAATCAGTTA+TGG - chr4_3:14261919-14261938 Msa0631350:CDS 35.0%
TGAAGCTCGTAATCAGTTAT+GGG - chr4_3:14261920-14261939 Msa0631350:CDS 35.0%
CTAACACAACCCTACAAAAT+CGG - chr4_3:14262157-14262176 Msa0631350:intron 35.0%
GCTATCAGATTTCTGTTATC+AGG + chr4_3:14262231-14262250 None:intergenic 35.0%
GATAACAGAAATCTGATAGC+AGG - chr4_3:14262231-14262250 Msa0631350:intron 35.0%
CCATACTTCTTCATTATCTC+TGG + chr4_3:14262374-14262393 None:intergenic 35.0%
CCAGAGATAATGAAGAAGTA+TGG - chr4_3:14262371-14262390 Msa0631350:intron 35.0%
TGATGCAAGAGAGAAACTTA+TGG - chr4_3:14262561-14262580 Msa0631350:intron 35.0%
! AAGCTGGATTCTCTTGTTAT+GGG - chr4_3:14262601-14262620 Msa0631350:intron 35.0%
!!! GTTTGTTTTGGAGTGTAAGT+TGG - chr4_3:14262765-14262784 Msa0631350:intron 35.0%
TGGTGAGATTGACAAAATCA+CGG - chr4_3:14262896-14262915 Msa0631350:intron 35.0%
! ATAGCTTTACAAAATCAGGG+TGG - chr4_3:14262987-14263006 Msa0631350:intron 35.0%
ATAGTGAGATCGAACAATCA+CGG + chr4_3:14263017-14263036 None:intergenic 35.0%
TTCATAAGTTCACAGCAGAA+TGG + chr4_3:14263160-14263179 None:intergenic 35.0%
GCTAGAATCAATTATAGGAC+TGG + chr4_3:14263272-14263291 None:intergenic 35.0%
TTGGGGCTAGAATCAATTAT+AGG + chr4_3:14263277-14263296 None:intergenic 35.0%
!! TGGATTGAAAGTGTAGCTTT+TGG - chr4_3:14263391-14263410 Msa0631350:CDS 35.0%
! TGTCGTTAAATCTGATGATG+AGG - chr4_3:14263599-14263618 Msa0631350:intron 35.0%
! GTCGTTAAATCTGATGATGA+GGG - chr4_3:14263600-14263619 Msa0631350:intron 35.0%
!!! CATATAGAAGAGCGTCTTTT+AGG - chr4_3:14263642-14263661 Msa0631350:intron 35.0%
TATCCTTGACAATAGTCACT+GGG + chr4_3:14263890-14263909 None:intergenic 35.0%
TTATCCTTGACAATAGTCAC+TGG + chr4_3:14263891-14263910 None:intergenic 35.0%
TAGAACAATTGGTGTGGCTT+TGG - chr4_3:14261794-14261813 Msa0631350:three_prime_UTR 40.0%
!! CAGCAAGAATGCTCTGAAAT+GGG - chr4_3:14261830-14261849 Msa0631350:three_prime_UTR 40.0%
CAAGAGAATCATGACTGATG+TGG + chr4_3:14261899-14261918 None:intergenic 40.0%
AATCAGTTATGGGCCAAAGA+TGG - chr4_3:14261930-14261949 Msa0631350:CDS 40.0%
GTACTTACGAGAACCATCTT+TGG + chr4_3:14261946-14261965 None:intergenic 40.0%
TTGCCTCCACTTATAAATCG+TGG - chr4_3:14262198-14262217 Msa0631350:intron 40.0%
CTCCACTTATAAATCGTGGT+GGG - chr4_3:14262202-14262221 Msa0631350:intron 40.0%
AACAGAAATCTGATAGCAGG+TGG - chr4_3:14262234-14262253 Msa0631350:intron 40.0%
GGTTCTCTGAACTCTTTCAA+AGG + chr4_3:14262353-14262372 None:intergenic 40.0%
TGGTGTTCAGATTGATATCG+AGG - chr4_3:14262391-14262410 Msa0631350:intron 40.0%
GAAGCTGGATTCTCTTGTTA+TGG - chr4_3:14262600-14262619 Msa0631350:intron 40.0%
! ATTCTCTTGTTATGGGTAGC+AGG - chr4_3:14262608-14262627 Msa0631350:intron 40.0%
! TTCTCTTGTTATGGGTAGCA+GGG - chr4_3:14262609-14262628 Msa0631350:intron 40.0%
!! ACATCATGTGGGGTTTGTTT+TGG - chr4_3:14262753-14262772 Msa0631350:intron 40.0%
ATACTCAAGTCGCTCATGTT+TGG - chr4_3:14262868-14262887 Msa0631350:intron 40.0%
! ACATTTACGTTGGTGAAACG+TGG - chr4_3:14263073-14263092 Msa0631350:intron 40.0%
GTTTGTTTCCACTGCAGAAT+GGG + chr4_3:14263226-14263245 None:intergenic 40.0%
TGTTTGTTTCCACTGCAGAA+TGG + chr4_3:14263227-14263246 None:intergenic 40.0%
TGGCAAAAGCTACACTTTGT+TGG - chr4_3:14262935-14262954 Msa0631350:intron 40.0%
AGACGCTCTTCTATATGCAT+TGG + chr4_3:14263639-14263658 None:intergenic 40.0%
TAGAACAATTGGTGTGGCTT+TGG - chr4_3:14261794-14261813 Msa0631350:three_prime_UTR 40.0%
!! CAGCAAGAATGCTCTGAAAT+GGG - chr4_3:14261830-14261849 Msa0631350:three_prime_UTR 40.0%
CAAGAGAATCATGACTGATG+TGG + chr4_3:14261899-14261918 None:intergenic 40.0%
AATCAGTTATGGGCCAAAGA+TGG - chr4_3:14261930-14261949 Msa0631350:CDS 40.0%
GTACTTACGAGAACCATCTT+TGG + chr4_3:14261946-14261965 None:intergenic 40.0%
TTGCCTCCACTTATAAATCG+TGG - chr4_3:14262198-14262217 Msa0631350:intron 40.0%
CTCCACTTATAAATCGTGGT+GGG - chr4_3:14262202-14262221 Msa0631350:intron 40.0%
AACAGAAATCTGATAGCAGG+TGG - chr4_3:14262234-14262253 Msa0631350:intron 40.0%
GGTTCTCTGAACTCTTTCAA+AGG + chr4_3:14262353-14262372 None:intergenic 40.0%
TGGTGTTCAGATTGATATCG+AGG - chr4_3:14262391-14262410 Msa0631350:intron 40.0%
GAAGCTGGATTCTCTTGTTA+TGG - chr4_3:14262600-14262619 Msa0631350:intron 40.0%
! ATTCTCTTGTTATGGGTAGC+AGG - chr4_3:14262608-14262627 Msa0631350:intron 40.0%
! TTCTCTTGTTATGGGTAGCA+GGG - chr4_3:14262609-14262628 Msa0631350:intron 40.0%
!! ACATCATGTGGGGTTTGTTT+TGG - chr4_3:14262753-14262772 Msa0631350:intron 40.0%
ATACTCAAGTCGCTCATGTT+TGG - chr4_3:14262868-14262887 Msa0631350:intron 40.0%
! ACATTTACGTTGGTGAAACG+TGG - chr4_3:14263073-14263092 Msa0631350:intron 40.0%
GTTTGTTTCCACTGCAGAAT+GGG + chr4_3:14263226-14263245 None:intergenic 40.0%
TGTTTGTTTCCACTGCAGAA+TGG + chr4_3:14263227-14263246 None:intergenic 40.0%
TGGCAAAAGCTACACTTTGT+TGG - chr4_3:14262935-14262954 Msa0631350:intron 40.0%
AGACGCTCTTCTATATGCAT+TGG + chr4_3:14263639-14263658 None:intergenic 40.0%
!! GCAGCAAGAATGCTCTGAAA+TGG - chr4_3:14261829-14261848 Msa0631350:three_prime_UTR 45.0%
CCACCACGATTTATAAGTGG+AGG + chr4_3:14262204-14262223 None:intergenic 45.0%
CCTCCACTTATAAATCGTGG+TGG - chr4_3:14262201-14262220 Msa0631350:intron 45.0%
CACCCACCACGATTTATAAG+TGG + chr4_3:14262207-14262226 None:intergenic 45.0%
! CACTTATAAATCGTGGTGGG+TGG - chr4_3:14262205-14262224 Msa0631350:intron 45.0%
! TGCTGTTGAAGATCTGAAGC+TGG - chr4_3:14262585-14262604 Msa0631350:intron 45.0%
! TCTCTTGTTATGGGTAGCAG+GGG - chr4_3:14262610-14262629 Msa0631350:intron 45.0%
! ACGGTGAGTCAACGTGATTT+TGG - chr4_3:14262915-14262934 Msa0631350:intron 45.0%
ACTATCCAAGCATGTACGTC+TGG - chr4_3:14263032-14263051 Msa0631350:intron 45.0%
ACAATGATAGATGCGCGTCT+AGG - chr4_3:14263133-14263152 Msa0631350:intron 45.0%
CACTGCAGAATGGGTATAAG+AGG + chr4_3:14263217-14263236 None:intergenic 45.0%
CTCTTATACCCATTCTGCAG+TGG - chr4_3:14263215-14263234 Msa0631350:CDS 45.0%
TTGACAATAGTCACTGGGCA+AGG + chr4_3:14263885-14263904 None:intergenic 45.0%
TTGCCCAGTGACTATTGTCA+AGG - chr4_3:14263884-14263903 Msa0631350:CDS 45.0%
!! GCAGCAAGAATGCTCTGAAA+TGG - chr4_3:14261829-14261848 Msa0631350:three_prime_UTR 45.0%
CCACCACGATTTATAAGTGG+AGG + chr4_3:14262204-14262223 None:intergenic 45.0%
CCTCCACTTATAAATCGTGG+TGG - chr4_3:14262201-14262220 Msa0631350:intron 45.0%
CACCCACCACGATTTATAAG+TGG + chr4_3:14262207-14262226 None:intergenic 45.0%
! CACTTATAAATCGTGGTGGG+TGG - chr4_3:14262205-14262224 Msa0631350:intron 45.0%
! TGCTGTTGAAGATCTGAAGC+TGG - chr4_3:14262585-14262604 Msa0631350:intron 45.0%
! TCTCTTGTTATGGGTAGCAG+GGG - chr4_3:14262610-14262629 Msa0631350:intron 45.0%
! ACGGTGAGTCAACGTGATTT+TGG - chr4_3:14262915-14262934 Msa0631350:intron 45.0%
ACTATCCAAGCATGTACGTC+TGG - chr4_3:14263032-14263051 Msa0631350:intron 45.0%
ACAATGATAGATGCGCGTCT+AGG - chr4_3:14263133-14263152 Msa0631350:intron 45.0%
CACTGCAGAATGGGTATAAG+AGG + chr4_3:14263217-14263236 None:intergenic 45.0%
CTCTTATACCCATTCTGCAG+TGG - chr4_3:14263215-14263234 Msa0631350:CDS 45.0%
TTGACAATAGTCACTGGGCA+AGG + chr4_3:14263885-14263904 None:intergenic 45.0%
TTGCCCAGTGACTATTGTCA+AGG - chr4_3:14263884-14263903 Msa0631350:CDS 45.0%
! CAGAGCATTCTTGCTGCTCT+TGG + chr4_3:14261826-14261845 None:intergenic 50.0%
AGAGCCTCTCAAGATCCACT+AGG + chr4_3:14262260-14262279 None:intergenic 50.0%
! GAGAGGCTCTGATAGCATTC+TGG - chr4_3:14262270-14262289 Msa0631350:intron 50.0%
GGGGTCTCAGCACAATTCAA+AGG - chr4_3:14262629-14262648 Msa0631350:intron 50.0%
GTCGCTCATGTTTGGATGAG+TGG - chr4_3:14262876-14262895 Msa0631350:intron 50.0%
TGGAACCAGACGTACATGCT+TGG + chr4_3:14263040-14263059 None:intergenic 50.0%
! CAGAGCATTCTTGCTGCTCT+TGG + chr4_3:14261826-14261845 None:intergenic 50.0%
AGAGCCTCTCAAGATCCACT+AGG + chr4_3:14262260-14262279 None:intergenic 50.0%
! GAGAGGCTCTGATAGCATTC+TGG - chr4_3:14262270-14262289 Msa0631350:intron 50.0%
GGGGTCTCAGCACAATTCAA+AGG - chr4_3:14262629-14262648 Msa0631350:intron 50.0%
GTCGCTCATGTTTGGATGAG+TGG - chr4_3:14262876-14262895 Msa0631350:intron 50.0%
TGGAACCAGACGTACATGCT+TGG + chr4_3:14263040-14263059 None:intergenic 50.0%
TCTGATAGCAGGTGGCCTAG+TGG - chr4_3:14262242-14262261 Msa0631350:intron 55.0%
! GTGGCCTAGTGGATCTTGAG+AGG - chr4_3:14262253-14262272 Msa0631350:intron 55.0%
! AGTCACTGGGCAAGGAGCAT+TGG + chr4_3:14263877-14263896 None:intergenic 55.0%
TCTGATAGCAGGTGGCCTAG+TGG - chr4_3:14262242-14262261 Msa0631350:intron 55.0%
! GTGGCCTAGTGGATCTTGAG+AGG - chr4_3:14262253-14262272 Msa0631350:intron 55.0%
! AGTCACTGGGCAAGGAGCAT+TGG + chr4_3:14263877-14263896 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 14261711 14264126 14261711 ID=Msa0631350;Name=Msa0631350
chr4_3 mRNA 14261711 14264126 14261711 ID=Msa0631350-mRNA-1;Parent=Msa0631350;Name=Msa0631350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=72|0.66|0.75|1|1|1|4|197|158
chr4_3 exon 14261711 14261998 14261711 ID=Msa0631350-mRNA-1:exon:3953;Parent=Msa0631350-mRNA-1
chr4_3 exon 14263187 14263305 14263187 ID=Msa0631350-mRNA-1:exon:3952;Parent=Msa0631350-mRNA-1
chr4_3 exon 14263386 14263477 14263386 ID=Msa0631350-mRNA-1:exon:3951;Parent=Msa0631350-mRNA-1
chr4_3 exon 14263880 14264126 14263880 ID=Msa0631350-mRNA-1:exon:3950;Parent=Msa0631350-mRNA-1
chr4_3 five_prime_UTR 14264055 14264126 14264055 ID=Msa0631350-mRNA-1:five_prime_utr;Parent=Msa0631350-mRNA-1
chr4_3 CDS 14263880 14264054 14263880 ID=Msa0631350-mRNA-1:cds;Parent=Msa0631350-mRNA-1
chr4_3 CDS 14263386 14263477 14263386 ID=Msa0631350-mRNA-1:cds;Parent=Msa0631350-mRNA-1
chr4_3 CDS 14263187 14263305 14263187 ID=Msa0631350-mRNA-1:cds;Parent=Msa0631350-mRNA-1
chr4_3 CDS 14261908 14261998 14261908 ID=Msa0631350-mRNA-1:cds;Parent=Msa0631350-mRNA-1
chr4_3 three_prime_UTR 14261711 14261907 14261711 ID=Msa0631350-mRNA-1:three_prime_utr;Parent=Msa0631350-mRNA-1
Gene Sequence

>Msa0631350

ATGGCAAAAGATAGAACAATTGGTGTGGCTTTGGATTTCTCCAAGAGCAGCAAGAATGCTCTGAAATGGGCACTTGAGAATTTAGCTGATAAAGGTGACAACATTTACATCATCCACATCAGTCATGATTCTCTTGATGAAGCTCGTAATCAGTTATGGGCCAAAGATGGTTCTCAGTTCAGAGAACCAGAGATAATGAAGAAGTATGGTGTTCAGATTGATATCGAGGTTCTTGATTTGCTTGACACTTTTTCAAGACAAAAAGAGGTGAATATTGTTACAAAAGTGTATTGGGGTGATGCAAGAGAGAAACTTATGGATGCTGTTGAAGATCTGAAGCTGGATTCTCTTGTTATGGGTAGCAGGGGTCTCAGCACAATTCAAAGGATATTATTGGGAAGTGTAAGCAACTTTGTGATGACCAATGCTCCTTGCCCAGTGACTATTGTCAAGGATAATAGCAGCAGCAGCAAGTAA

Protein sequence

>Msa0631350

MAKDRTIGVALDFSKSSKNALKWALENLADKGDNIYIIHISHDSLDEARNQLWAKDGSQFREPEIMKKYGVQIDIEVLDLLDTFSRQKEVNIVTKVYWGDAREKLMDAVEDLKLDSLVMGSRGLSTIQRILLGSVSNFVMTNAPCPVTIVKDNSSSSK*