AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376690 MtrunA17_Chr3g0127251 97.484 159 4 0 1 159 1 159 3.15e-113 321
Msa0376690 MtrunA17_Chr4g0013601 27.044 159 108 6 1 154 1 156 4.38e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376690 AT1G09150.1 83.019 159 27 0 1 159 1 159 1.60e-95 276

Find 59 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATTTCTTCATTATATC+TGG 0.192913 3_1:+76806818 None:intergenic
CACCTCTTATAGTTGCTAAA+TGG 0.288298 3_1:-76808118 Msa0376690:intron
AAAGCAATCAACAAGGGAAT+TGG 0.322873 3_1:-76806083 Msa0376690:CDS
ATTATCTCAATGATGGTCTT+TGG 0.327245 3_1:-76806046 Msa0376690:CDS
TGTCCTGGTCTTACATCTCC+TGG 0.329472 3_1:-76806746 Msa0376690:CDS
AAATATGAACTTTACATTGA+TGG 0.334633 3_1:+76807903 None:intergenic
GGGTGTTCTGGATGAGGAAG+TGG 0.336037 3_1:-76806723 Msa0376690:CDS
AACTATAAGAGGTGACTTCT+TGG 0.338003 3_1:+76808127 None:intergenic
AAAATTTCTAGTATTGTGTT+AGG 0.350915 3_1:-76805380 Msa0376690:three_prime_UTR
TGGTGCAATAAGATTTGTTT+TGG 0.351364 3_1:-76806786 Msa0376690:CDS
AAGCAATCAACAAGGGAATT+GGG 0.354037 3_1:-76806082 Msa0376690:CDS
CGCTTATGATCCCTAAAATC+TGG 0.363912 3_1:+76805705 None:intergenic
GTGTTCTGGATGAGGAAGTG+GGG 0.404683 3_1:-76806721 Msa0376690:CDS
TGGATCAAGTTCCAGAAAAC+AGG 0.408316 3_1:+76805725 None:intergenic
GAGAGCCGCGATGCCAACTT+AGG 0.431618 3_1:-76805756 Msa0376690:CDS
AACCATTTAGCAACTATAAG+AGG 0.435947 3_1:+76808116 None:intergenic
GGTGTTCTGGATGAGGAAGT+GGG 0.436303 3_1:-76806722 Msa0376690:CDS
GTCCTGGTCTTACATCTCCT+GGG 0.439119 3_1:-76806745 Msa0376690:CDS
TCCAACACTGGTTCAAGTCC+TGG 0.460743 3_1:+76808161 None:intergenic
CAAACAAAATAAAGATCAAA+TGG 0.460987 3_1:+76805478 None:intergenic
AAGAAGTTCAACTACTTTCG+TGG 0.462951 3_1:-76806113 Msa0376690:CDS
ACTATAAGAGGTGACTTCTT+GGG 0.475825 3_1:+76808128 None:intergenic
GCGTGGTTCAGCCACTCAAT+AGG 0.477544 3_1:+76805528 None:intergenic
CACACAAGTTTATTCAAAGA+TGG 0.478881 3_1:-76805506 Msa0376690:three_prime_UTR
CTTATGGTGCGTTGAGTTGA+AGG 0.481791 3_1:+76808872 None:intergenic
AAACAGCATGCCCTTGCCAT+TGG 0.482054 3_1:-76806560 Msa0376690:CDS
TTTCTCATTTCAGGCCATCA+TGG 0.485619 3_1:-76806591 Msa0376690:intron
TAGTCAGAACCATCTCAATC+TGG 0.488658 3_1:-76807996 Msa0376690:CDS
TGTTCTGGATGAGGAAGTGG+GGG 0.494533 3_1:-76806720 Msa0376690:CDS
AGTCGCAAGGTAGGCATGTA+CGG 0.512614 3_1:+76807929 None:intergenic
AGAGCCGCGATGCCAACTTA+GGG 0.516621 3_1:-76805755 Msa0376690:CDS
AACTTGCATTATCTCAATGA+TGG 0.525811 3_1:-76806053 Msa0376690:CDS
ATTACTAAACTGCAGTATCC+AGG 0.527390 3_1:-76808179 Msa0376690:intron
CAAAATAAAGATCAAATGGC+AGG 0.532151 3_1:+76805482 None:intergenic
ACAGGACTGCATCCCTAAGT+TGG 0.534258 3_1:+76805743 None:intergenic
CTCATGTAAACAGTAAAGAA+AGG 0.535169 3_1:-76805658 Msa0376690:three_prime_UTR
GAACCATCTCAATCTGGTTG+TGG 0.552638 3_1:-76807990 Msa0376690:CDS
ATGTAACTTGTGGAATACAC+TGG 0.559241 3_1:-76805589 Msa0376690:three_prime_UTR
GGTGCAAACATAATGTGTCC+TGG 0.560571 3_1:-76806761 Msa0376690:CDS
GTATAATAAAACAAACTAGC+AGG 0.560702 3_1:+76805680 None:intergenic
TCCTGGTCTTACATCTCCTG+GGG 0.566559 3_1:-76806744 Msa0376690:CDS
TCCAGGACTTGAACCAGTGT+TGG 0.569000 3_1:-76808162 Msa0376690:CDS
TCTCAATGATGGTCTTTGGA+AGG 0.575361 3_1:-76806042 Msa0376690:intron
AGCAATCAACAAGGGAATTG+GGG 0.580148 3_1:-76806081 Msa0376690:CDS
ACGTCAAAGTATTGCAGATG+AGG 0.585598 3_1:-76808443 Msa0376690:intron
AGTTCTGTACTCCTATTGAG+TGG 0.595563 3_1:-76805539 Msa0376690:three_prime_UTR
TGATGGAGAAGTCGCAAGGT+AGG 0.596779 3_1:+76807920 None:intergenic
TTTCAGGCCATCATGGCTGA+AGG 0.607923 3_1:-76806584 Msa0376690:intron
TCACCACAACCAGATTGAGA+TGG 0.615908 3_1:+76807987 None:intergenic
ACATTGATGGAGAAGTCGCA+AGG 0.629589 3_1:+76807916 None:intergenic
TTTGAATAAACTTGTGTGCG+TGG 0.643292 3_1:+76805511 None:intergenic
TTCAGAAAAGCAATCAACAA+GGG 0.652972 3_1:-76806089 Msa0376690:CDS
GGAAGTATATCATCCAACAC+TGG 0.658326 3_1:+76808149 None:intergenic
TGTAACTTGTGGAATACACT+GGG 0.662827 3_1:-76805588 Msa0376690:three_prime_UTR
TTTCAGAAAAGCAATCAACA+AGG 0.684568 3_1:-76806090 Msa0376690:CDS
CCTGGTCTTACATCTCCTGG+GGG 0.695202 3_1:-76806743 Msa0376690:CDS
AAACAAATCTTATTGCACCA+CGG 0.718835 3_1:+76806789 None:intergenic
GCATCCCTAAGTTGGCATCG+CGG 0.749002 3_1:+76805751 None:intergenic
AAGAAATTACAAGTTGACCG+TGG 0.749697 3_1:-76806806 Msa0376690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTAATTTATTTTT+CGG - chr3_1:76805548-76805567 Msa0376690:three_prime_UTR 0.0%
!!! GAAATTAAATCATTTTTTTA+GGG + chr3_1:76805621-76805640 None:intergenic 10.0%
!! AAATGATAATTGATAAATTA+CGG + chr3_1:76807344-76807363 None:intergenic 10.0%
!! TATAATATATTAAAAATCAG+CGG + chr3_1:76808472-76808491 None:intergenic 10.0%
!! AAAACTAATATAGAAGAAAA+TGG + chr3_1:76805525-76805544 None:intergenic 15.0%
!!! CGAAATTAAATCATTTTTTT+AGG + chr3_1:76805622-76805641 None:intergenic 15.0%
!! TTTGTAATATTCTTTCATTT+GGG - chr3_1:76806453-76806472 Msa0376690:intron 15.0%
!! CATATATTATCTTGATTAAA+AGG + chr3_1:76807098-76807117 None:intergenic 15.0%
!! CATATATTATCTTGATTAAA+AGG + chr3_1:76807098-76807117 None:intergenic 15.0%
!! AGAATAAAATAAAGATTGTT+AGG + chr3_1:76808496-76808515 None:intergenic 15.0%
!!! ATTTTATTCTATATTGTAGA+TGG - chr3_1:76808506-76808525 Msa0376690:CDS 15.0%
!!! TACTAGAAATTTTAAGTAAA+TGG + chr3_1:76808928-76808947 None:intergenic 15.0%
!!! AATCATTTTTTTAGGGTTTA+GGG + chr3_1:76805614-76805633 None:intergenic 20.0%
!!! AAATCATTTTTTTAGGGTTT+AGG + chr3_1:76805615-76805634 None:intergenic 20.0%
!! ACCAACACAAAAAAAAAAAA+AGG + chr3_1:76805906-76805925 None:intergenic 20.0%
!! AATAAAAAAGATGCATAGTT+TGG + chr3_1:76806073-76806092 None:intergenic 20.0%
!! AAATATGAACTTTACATTGA+TGG + chr3_1:76806415-76806434 None:intergenic 20.0%
!! GTTTGTAATATTCTTTCATT+TGG - chr3_1:76806452-76806471 Msa0376690:intron 20.0%
!!! TTTTTTGAGTAATGCATATA+TGG - chr3_1:76806512-76806531 Msa0376690:intron 20.0%
!! TATGGATATAAACTACTTAT+AGG - chr3_1:76806530-76806549 Msa0376690:intron 20.0%
!! ATGCATATATAAAGTAAAAG+AGG + chr3_1:76806803-76806822 None:intergenic 20.0%
!! TGTAATTTCTTCATTATATC+TGG + chr3_1:76807500-76807519 None:intergenic 20.0%
!! CCATTAAAATTTATACTACA+TGG + chr3_1:76808084-76808103 None:intergenic 20.0%
!!! CCATGTAGTATAAATTTTAA+TGG - chr3_1:76808081-76808100 Msa0376690:intron 20.0%
!! TAATAAGTACATGAATACAA+AGG + chr3_1:76808319-76808338 None:intergenic 20.0%
!! AAATAAGTATACATACATAG+TGG - chr3_1:76808338-76808357 Msa0376690:intron 20.0%
!!! TCTTATCTCTTTTGTTTATT+TGG - chr3_1:76808408-76808427 Msa0376690:intron 20.0%
!!! CTTTTGTTTATTTGGAATTT+TGG - chr3_1:76808416-76808435 Msa0376690:intron 20.0%
!! TTTGGATAGTATAACTTAAT+TGG - chr3_1:76808434-76808453 Msa0376690:intron 20.0%
!! TTGGATAGTATAACTTAATT+GGG - chr3_1:76808435-76808454 Msa0376690:intron 20.0%
!! CAAACAAAATAAAGATCAAA+TGG + chr3_1:76808840-76808859 None:intergenic 20.0%
!!! CATTTGATCTTTATTTTGTT+TGG - chr3_1:76808838-76808857 Msa0376690:intron 20.0%
!!! AAAATTTCTAGTATTGTGTT+AGG - chr3_1:76808935-76808954 Msa0376690:five_prime_UTR 20.0%
!!! TGTACTTTTTGAACATCTTA+TGG + chr3_1:76805462-76805481 None:intergenic 25.0%
!!! AGAGGTACTAAAAAAAAAGT+GGG + chr3_1:76805662-76805681 None:intergenic 25.0%
!!! AAGAGGTACTAAAAAAAAAG+TGG + chr3_1:76805663-76805682 None:intergenic 25.0%
! TAATGAACAATTGTGTAAAG+AGG + chr3_1:76805680-76805699 None:intergenic 25.0%
!!! GCCTTTTTTTTTTTTTGTGT+TGG - chr3_1:76805902-76805921 Msa0376690:intron 25.0%
! CATACAATTAGTGATATCTA+AGG + chr3_1:76805938-76805957 None:intergenic 25.0%
! TAGATATCACTAATTGTATG+TGG - chr3_1:76805938-76805957 Msa0376690:intron 25.0%
! AGATATCACTAATTGTATGT+GGG - chr3_1:76805939-76805958 Msa0376690:intron 25.0%
!! TCGTGATTCTGATAATTTTA+TGG - chr3_1:76806023-76806042 Msa0376690:intron 25.0%
! TAGGTTAATTAATAGTCACA+TGG + chr3_1:76806115-76806134 None:intergenic 25.0%
! ATACTGCAGTTTAGTAATTT+AGG + chr3_1:76806134-76806153 None:intergenic 25.0%
! TAATATTCTTTCATTTGGGA+GGG - chr3_1:76806457-76806476 Msa0376690:intron 25.0%
!! GAATACATGATAATGTTGAT+TGG - chr3_1:76806670-76806689 Msa0376690:intron 25.0%
! TATGTGTTGAAGATATTATC+TGG + chr3_1:76806852-76806871 None:intergenic 25.0%
! ACTACCATTCAATAATAAGA+CGG + chr3_1:76806897-76806916 None:intergenic 25.0%
! ATTAAAACTAGCAAAACTCT+TGG + chr3_1:76806945-76806964 None:intergenic 25.0%
! TATCTTGATTAAAAGGTTTG+AGG + chr3_1:76807091-76807110 None:intergenic 25.0%
! TATCTTGATTAAAAGGTTTG+AGG + chr3_1:76807091-76807110 None:intergenic 25.0%
!!! CTTCCTACATTTTAAAAAAG+AGG + chr3_1:76807317-76807336 None:intergenic 25.0%
! AAACAATCTACAAAACACAA+TGG + chr3_1:76807641-76807660 None:intergenic 25.0%
! TGAGAAAAATACATGATATG+AGG + chr3_1:76807711-76807730 None:intergenic 25.0%
!! TCATGTATTTTTCTCATTTC+AGG - chr3_1:76807715-76807734 Msa0376690:intron 25.0%
!! TGACATTTTTGTAAATCCAA+TGG + chr3_1:76807774-76807793 None:intergenic 25.0%
! TAGAGATTAGAGATAAGATA+TGG - chr3_1:76808141-76808160 Msa0376690:CDS 25.0%
! GTATAATAAAACAAACTAGC+AGG + chr3_1:76808638-76808657 None:intergenic 25.0%
!! TGTAGATTTTATGTAACTTG+TGG - chr3_1:76808716-76808735 Msa0376690:intron 25.0%
!!! TGATCTTTATTTTGTTTGGT+AGG - chr3_1:76808842-76808861 Msa0376690:intron 25.0%
ACTAAAAAAAAAGTGGGCAT+TGG + chr3_1:76805656-76805675 None:intergenic 30.0%
! TTTCAGATTTTCATCTGAAG+AGG - chr3_1:76805806-76805825 Msa0376690:intron 30.0%
TTGAAGCTTAAACAGAATCA+CGG + chr3_1:76805972-76805991 None:intergenic 30.0%
TTGGTGAATTAATGCATGTT+TGG + chr3_1:76806054-76806073 None:intergenic 30.0%
AACCATTTAGCAACTATAAG+AGG + chr3_1:76806202-76806221 None:intergenic 30.0%
! TTGTAGTTCTATTTGCTTTG+AGG - chr3_1:76806232-76806251 Msa0376690:intron 30.0%
TCACGAACACTAAAAAACAA+AGG + chr3_1:76806362-76806381 None:intergenic 30.0%
!!! TTGTTTTTTAGTGTTCGTGA+TGG - chr3_1:76806362-76806381 Msa0376690:intron 30.0%
GTAATATTCTTTCATTTGGG+AGG - chr3_1:76806456-76806475 Msa0376690:intron 30.0%
AATATTCTTTCATTTGGGAG+GGG - chr3_1:76806458-76806477 Msa0376690:intron 30.0%
ACATATGGTGAATACTGAAT+AGG - chr3_1:76806575-76806594 Msa0376690:CDS 30.0%
AGAGAAAAACAATAGCTGTT+TGG - chr3_1:76806622-76806641 Msa0376690:intron 30.0%
CTCTATACTAGAAAGTTTCT+CGG + chr3_1:76806651-76806670 None:intergenic 30.0%
! ACATGATAATGTTGATTGGT+TGG - chr3_1:76806674-76806693 Msa0376690:intron 30.0%
GAGAGAACATAAAGATCATA+CGG - chr3_1:76806971-76806990 Msa0376690:intron 30.0%
! AAAGTTTTCTCAGTTCTCAA+AGG + chr3_1:76807045-76807064 None:intergenic 30.0%
! AGGTTTGAGGAGTATAAATA+GGG + chr3_1:76807078-76807097 None:intergenic 30.0%
! AAGGTTTGAGGAGTATAAAT+AGG + chr3_1:76807079-76807098 None:intergenic 30.0%
TCTCAAGGTTATCTAAATGT+GGG + chr3_1:76807183-76807202 None:intergenic 30.0%
ACATTTAGATAACCTTGAGA+CGG - chr3_1:76807183-76807202 Msa0376690:intron 30.0%
! AAACAAACCATTCTAGGAAA+TGG - chr3_1:76807217-76807236 Msa0376690:intron 30.0%
TAATGACCAAAGTGAGAAAA+TGG + chr3_1:76807280-76807299 None:intergenic 30.0%
TTTAAAAAAGAGGACGAATG+CGG + chr3_1:76807307-76807326 None:intergenic 30.0%
!!! CGTCCTCTTTTTTAAAATGT+AGG - chr3_1:76807311-76807330 Msa0376690:intron 30.0%
! GAAACTCTTCCATGTTTTAT+AGG + chr3_1:76807392-76807411 None:intergenic 30.0%
TAAAACATGGAAGAGTTTCT+AGG - chr3_1:76807393-76807412 Msa0376690:intron 30.0%
AAACAAATCTTATTGCACCA+CGG + chr3_1:76807529-76807548 None:intergenic 30.0%
!! TGGTGCAATAAGATTTGTTT+TGG - chr3_1:76807529-76807548 Msa0376690:intron 30.0%
!!! TGCAATAAGATTTGTTTTGG+CGG - chr3_1:76807532-76807551 Msa0376690:intron 30.0%
! TTTTGTAAATCCAATGGCAA+GGG + chr3_1:76807768-76807787 None:intergenic 30.0%
! TTTTTGTAAATCCAATGGCA+AGG + chr3_1:76807769-76807788 None:intergenic 30.0%
AAGAGGCTCTTCATTTATTT+GGG + chr3_1:76807875-76807894 None:intergenic 30.0%
AAAGAGGCTCTTCATTTATT+TGG + chr3_1:76807876-76807895 None:intergenic 30.0%
! TAAAGTGGAAAACTTGTTTG+TGG + chr3_1:76808058-76808077 None:intergenic 30.0%
TATACTACATGGCAATAAAG+TGG + chr3_1:76808073-76808092 None:intergenic 30.0%
!!! TAGCCCTATGTTTTATTTGA+GGG + chr3_1:76808112-76808131 None:intergenic 30.0%
!!! TTAGCCCTATGTTTTATTTG+AGG + chr3_1:76808113-76808132 None:intergenic 30.0%
AATAAAACATAGGGCTAATG+TGG - chr3_1:76808115-76808134 Msa0376690:intron 30.0%
TTTCAGAAAAGCAATCAACA+AGG - chr3_1:76808225-76808244 Msa0376690:intron 30.0%
TTCAGAAAAGCAATCAACAA+GGG - chr3_1:76808226-76808245 Msa0376690:intron 30.0%
AACTTGCATTATCTCAATGA+TGG - chr3_1:76808262-76808281 Msa0376690:intron 30.0%
ATTATCTCAATGATGGTCTT+TGG - chr3_1:76808269-76808288 Msa0376690:intron 30.0%
TATTAAAAATCAGCGGTAAC+TGG + chr3_1:76808465-76808484 None:intergenic 30.0%
CTCATGTAAACAGTAAAGAA+AGG - chr3_1:76808657-76808676 Msa0376690:intron 30.0%
CACACAAGTTTATTCAAAGA+TGG - chr3_1:76808809-76808828 Msa0376690:intron 30.0%
CAAAATAAAGATCAAATGGC+AGG + chr3_1:76808836-76808855 None:intergenic 30.0%
!!! TCTTTATTTTGTTTGGTAGG+AGG - chr3_1:76808845-76808864 Msa0376690:intron 30.0%
TCACTAATTGTATGTGGGTT+TGG - chr3_1:76805944-76805963 Msa0376690:intron 35.0%
!!! ATGTTGTTTTTGCCTAACCA+CGG - chr3_1:76805993-76806012 Msa0376690:intron 35.0%
ATTACTAAACTGCAGTATCC+AGG - chr3_1:76806136-76806155 Msa0376690:intron 35.0%
ACTATAAGAGGTGACTTCTT+GGG + chr3_1:76806190-76806209 None:intergenic 35.0%
AACTATAAGAGGTGACTTCT+TGG + chr3_1:76806191-76806210 None:intergenic 35.0%
CACCTCTTATAGTTGCTAAA+TGG - chr3_1:76806197-76806216 Msa0376690:intron 35.0%
TTCACCATATGTGTTGAACA+CGG + chr3_1:76806567-76806586 None:intergenic 35.0%
AACTGTACTGTTCATACCAA+AGG - chr3_1:76806710-76806729 Msa0376690:CDS 35.0%
ACTGTACTGTTCATACCAAA+GGG - chr3_1:76806711-76806730 Msa0376690:CDS 35.0%
AGCAACATCAATGTTCTGAT+TGG - chr3_1:76806745-76806764 Msa0376690:CDS 35.0%
! TCTGCCGTCTTATTATTGAA+TGG - chr3_1:76806890-76806909 Msa0376690:intron 35.0%
! GGTTTGAGGAGTATAAATAG+GGG + chr3_1:76807077-76807096 None:intergenic 35.0%
CTCAAGGTTATCTAAATGTG+GGG + chr3_1:76807182-76807201 None:intergenic 35.0%
GTCTCAAGGTTATCTAAATG+TGG + chr3_1:76807184-76807203 None:intergenic 35.0%
! AAACCATTCTAGGAAATGGA+GGG - chr3_1:76807221-76807240 Msa0376690:intron 35.0%
! GTGCTTTTGGTCAAAGTATA+GGG + chr3_1:76807370-76807389 None:intergenic 35.0%
! CCATGTTTTATAGGTGCTTT+TGG + chr3_1:76807383-76807402 None:intergenic 35.0%
!! CCAAAAGCACCTATAAAACA+TGG - chr3_1:76807380-76807399 Msa0376690:intron 35.0%
! AAGAAATTACAAGTTGACCG+TGG - chr3_1:76807509-76807528 Msa0376690:intron 35.0%
!!! GCAATAAGATTTGTTTTGGC+GGG - chr3_1:76807533-76807552 Msa0376690:intron 35.0%
! ATGTCAACCAGAGAGTATAA+TGG + chr3_1:76807917-76807936 None:intergenic 35.0%
AGCTCCCTCAAATAAAACAT+AGG - chr3_1:76808105-76808124 Msa0376690:intron 35.0%
GCTCCCTCAAATAAAACATA+GGG - chr3_1:76808106-76808125 Msa0376690:intron 35.0%
CAATCATCGAAACTGAAACT+AGG + chr3_1:76808171-76808190 None:intergenic 35.0%
AAGAAGTTCAACTACTTTCG+TGG - chr3_1:76808202-76808221 Msa0376690:intron 35.0%
AAAGCAATCAACAAGGGAAT+TGG - chr3_1:76808232-76808251 Msa0376690:intron 35.0%
AAGCAATCAACAAGGGAATT+GGG - chr3_1:76808233-76808252 Msa0376690:intron 35.0%
! TGGAACTTGATCCAGATTTT+AGG - chr3_1:76808599-76808618 Msa0376690:intron 35.0%
! GGAACTTGATCCAGATTTTA+GGG - chr3_1:76808600-76808619 Msa0376690:intron 35.0%
! ATGTAACTTGTGGAATACAC+TGG - chr3_1:76808726-76808745 Msa0376690:intron 35.0%
! TGTAACTTGTGGAATACACT+GGG - chr3_1:76808727-76808746 Msa0376690:intron 35.0%
TTTGAATAAACTTGTGTGCG+TGG + chr3_1:76808807-76808826 None:intergenic 35.0%
!! ACGTCAAAGTATTGCAGATG+AGG - chr3_1:76805872-76805891 Msa0376690:intron 40.0%
! GGAAGTATATCATCCAACAC+TGG + chr3_1:76806169-76806188 None:intergenic 40.0%
! GGTTCTGACTACAAGAACAA+CGG + chr3_1:76806310-76806329 None:intergenic 40.0%
TAGTCAGAACCATCTCAATC+TGG - chr3_1:76806319-76806338 Msa0376690:intron 40.0%
TGATCCGTGTTCAACACATA+TGG - chr3_1:76806560-76806579 Msa0376690:CDS 40.0%
GTTCATACCAAAGGGCTATA+AGG - chr3_1:76806719-76806738 Msa0376690:CDS 40.0%
CTTTCTCTCAAGCATAGTGA+TGG - chr3_1:76806823-76806842 Msa0376690:CDS 40.0%
TTCTCAGTTCTCAAAGGTTC+AGG + chr3_1:76807039-76807058 None:intergenic 40.0%
TTTAGATAACCTTGAGACGG+AGG - chr3_1:76807186-76807205 Msa0376690:intron 40.0%
TTAGATAACCTTGAGACGGA+GGG - chr3_1:76807187-76807206 Msa0376690:intron 40.0%
! CAAACCATTCTAGGAAATGG+AGG - chr3_1:76807220-76807239 Msa0376690:intron 40.0%
! AACCATTCTAGGAAATGGAG+GGG - chr3_1:76807222-76807241 Msa0376690:intron 40.0%
! ACAAGCCATTGTTATTGCCT+TGG - chr3_1:76807249-76807268 Msa0376690:intron 40.0%
AACCACCAAGGCAATAACAA+TGG + chr3_1:76807257-76807276 None:intergenic 40.0%
! GTGGTTCCATTTTCTCACTT+TGG - chr3_1:76807271-76807290 Msa0376690:intron 40.0%
! CTTTTGGTCAAAGTATAGGG+AGG + chr3_1:76807367-76807386 None:intergenic 40.0%
! GGTGCTTTTGGTCAAAGTAT+AGG + chr3_1:76807371-76807390 None:intergenic 40.0%
TTTCTCATTTCAGGCCATCA+TGG - chr3_1:76807724-76807743 Msa0376690:intron 40.0%
! CCAGAGAGTATAATGGTAAG+AGG + chr3_1:76807910-76807929 None:intergenic 40.0%
CCTCTTACCATTATACTCTC+TGG - chr3_1:76807907-76807926 Msa0376690:intron 40.0%
! AACTTGTTTGTGGAAGGAAG+TGG + chr3_1:76808048-76808067 None:intergenic 40.0%
! GTGGAAAACTTGTTTGTGGA+AGG + chr3_1:76808054-76808073 None:intergenic 40.0%
AGCAATCAACAAGGGAATTG+GGG - chr3_1:76808234-76808253 Msa0376690:intron 40.0%
TCTCAATGATGGTCTTTGGA+AGG - chr3_1:76808273-76808292 Msa0376690:intron 40.0%
TATTTGATGTGCTACCATCG+TGG - chr3_1:76808381-76808400 Msa0376690:intron 40.0%
AGAGATAAGAAAAGCCACGA+TGG + chr3_1:76808398-76808417 None:intergenic 40.0%
TGGATCAAGTTCCAGAAAAC+AGG + chr3_1:76808593-76808612 None:intergenic 40.0%
CGCTTATGATCCCTAAAATC+TGG + chr3_1:76808613-76808632 None:intergenic 40.0%
AGTTCTGTACTCCTATTGAG+TGG - chr3_1:76808776-76808795 Msa0376690:intron 40.0%
!! CTTATGGTGCGTTGAGTTGA+AGG + chr3_1:76805446-76805465 None:intergenic 45.0%
!!! TTGTTTTTGCCTAACCACGG+TGG - chr3_1:76805996-76806015 Msa0376690:intron 45.0%
GAACCATCTCAATCTGGTTG+TGG - chr3_1:76806325-76806344 Msa0376690:intron 45.0%
TCACCACAACCAGATTGAGA+TGG + chr3_1:76806331-76806350 None:intergenic 45.0%
ACATTGATGGAGAAGTCGCA+AGG + chr3_1:76806402-76806421 None:intergenic 45.0%
TGCTCAACCTTATAGCCCTT+TGG + chr3_1:76806729-76806748 None:intergenic 45.0%
GGGGGAAAACAAACCATTCT+AGG - chr3_1:76807211-76807230 Msa0376690:intron 45.0%
! ACCATTCTAGGAAATGGAGG+GGG - chr3_1:76807223-76807242 Msa0376690:intron 45.0%
! AGCCATTGTTATTGCCTTGG+TGG - chr3_1:76807252-76807271 Msa0376690:intron 45.0%
GTGAGAAAATGGAACCACCA+AGG + chr3_1:76807269-76807288 None:intergenic 45.0%
CAGACATTATGCTCTGCAGT+TGG - chr3_1:76807424-76807443 Msa0376690:intron 45.0%
GGTGCAAACATAATGTGTCC+TGG - chr3_1:76807554-76807573 Msa0376690:intron 45.0%
AAACACAATGGCAGTACCAC+AGG + chr3_1:76807629-76807648 None:intergenic 45.0%
! CTGTTTTCCTTCAGCCATGA+TGG + chr3_1:76807741-76807760 None:intergenic 45.0%
! AGAGGCAGAGTTTCTGAAAG+AGG + chr3_1:76807892-76807911 None:intergenic 45.0%
AGAGGTGGAGCTACATGTTT+AGG - chr3_1:76808011-76808030 Msa0376690:intron 45.0%
GTGGAGCTACATGTTTAGGT+GGG - chr3_1:76808015-76808034 Msa0376690:intron 45.0%
TGGAGCTACATGTTTAGGTG+GGG - chr3_1:76808016-76808035 Msa0376690:intron 45.0%
AGCAATTGCACCATTGCTCG+TGG - chr3_1:76805583-76805602 Msa0376690:three_prime_UTR 50.0%
AATTGCACCATTGCTCGTGG+TGG - chr3_1:76805586-76805605 Msa0376690:three_prime_UTR 50.0%
TCCAGGACTTGAACCAGTGT+TGG - chr3_1:76806153-76806172 Msa0376690:intron 50.0%
!! TCCAACACTGGTTCAAGTCC+TGG + chr3_1:76806157-76806176 None:intergenic 50.0%
AGTCGCAAGGTAGGCATGTA+CGG + chr3_1:76806389-76806408 None:intergenic 50.0%
TGATGGAGAAGTCGCAAGGT+AGG + chr3_1:76806398-76806417 None:intergenic 50.0%
ATAACCTTGAGACGGAGGGA+GGG - chr3_1:76807191-76807210 Msa0376690:intron 50.0%
TCCCCCTCCATTTCCTAGAA+TGG + chr3_1:76807227-76807246 None:intergenic 50.0%
!! TGTCCTGGTCTTACATCTCC+TGG - chr3_1:76807569-76807588 Msa0376690:intron 50.0%
!! GTCCTGGTCTTACATCTCCT+GGG - chr3_1:76807570-76807589 Msa0376690:intron 50.0%
!! TCCTGGTCTTACATCTCCTG+GGG - chr3_1:76807571-76807590 Msa0376690:intron 50.0%
! GGTGTTCTGGATGAGGAAGT+GGG - chr3_1:76807593-76807612 Msa0376690:intron 50.0%
! GTGTTCTGGATGAGGAAGTG+GGG - chr3_1:76807594-76807613 Msa0376690:intron 50.0%
! TGTTCTGGATGAGGAAGTGG+GGG - chr3_1:76807595-76807614 Msa0376690:intron 50.0%
TTTCAGGCCATCATGGCTGA+AGG - chr3_1:76807731-76807750 Msa0376690:intron 50.0%
AAACAGCATGCCCTTGCCAT+TGG - chr3_1:76807755-76807774 Msa0376690:intron 50.0%
CCTCTAATTGCACGAGGTTG+TGG + chr3_1:76807996-76808015 None:intergenic 50.0%
CCACAACCTCGTGCAATTAG+AGG - chr3_1:76807993-76808012 Msa0376690:CDS 50.0%
CAACCTCGTGCAATTAGAGG+TGG - chr3_1:76807996-76808015 Msa0376690:CDS 50.0%
GGTGGAGCTACATGTTTAGG+TGG - chr3_1:76808014-76808033 Msa0376690:intron 50.0%
GGAGCTACATGTTTAGGTGG+GGG - chr3_1:76808017-76808036 Msa0376690:intron 50.0%
ACAGGACTGCATCCCTAAGT+TGG + chr3_1:76808575-76808594 None:intergenic 50.0%
! AGGGATGCAGTCCTGTTTTC+TGG - chr3_1:76808579-76808598 Msa0376690:intron 50.0%
! TAGGGTACCACCACGAGCAA+TGG + chr3_1:76805596-76805615 None:intergenic 55.0%
AGAATCACGATGAGCCACCG+TGG + chr3_1:76806013-76806032 None:intergenic 55.0%
GATAACCTTGAGACGGAGGG+AGG - chr3_1:76807190-76807209 Msa0376690:intron 55.0%
TAACCTTGAGACGGAGGGAG+GGG - chr3_1:76807192-76807211 Msa0376690:intron 55.0%
!! CCTGGTCTTACATCTCCTGG+GGG - chr3_1:76807572-76807591 Msa0376690:intron 55.0%
!! TACATCTCCTGGGGGTGTTC+TGG - chr3_1:76807580-76807599 Msa0376690:intron 55.0%
! GGGTGTTCTGGATGAGGAAG+TGG - chr3_1:76807592-76807611 Msa0376690:intron 55.0%
GCTCCACCTCTAATTGCACG+AGG + chr3_1:76808002-76808021 None:intergenic 55.0%
AGAGCCGCGATGCCAACTTA+GGG - chr3_1:76808560-76808579 Msa0376690:intron 55.0%
! GCATCCCTAAGTTGGCATCG+CGG + chr3_1:76808567-76808586 None:intergenic 55.0%
GCGTGGTTCAGCCACTCAAT+AGG + chr3_1:76808790-76808809 None:intergenic 55.0%
CACGATGAGCCACCGTGGTT+AGG + chr3_1:76806008-76806027 None:intergenic 60.0%
AACCTTGAGACGGAGGGAGG+GGG - chr3_1:76807193-76807212 Msa0376690:intron 60.0%
CCCCCAGGAGATGTAAGACC+AGG + chr3_1:76807575-76807594 None:intergenic 60.0%
!! TCCTGGGGGTGTTCTGGATG+AGG - chr3_1:76807586-76807605 Msa0376690:intron 60.0%
TCCTCATCCAGAACACCCCC+AGG + chr3_1:76807590-76807609 None:intergenic 60.0%
AGTGGGGGCAGAATGTCCTG+TGG - chr3_1:76807610-76807629 Msa0376690:intron 60.0%
GAGAGCCGCGATGCCAACTT+AGG - chr3_1:76808559-76808578 Msa0376690:intron 60.0%
TTCCCCCTCCCTCCGTCTCA+AGG + chr3_1:76807198-76807217 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76805372 76808965 76805372 ID=Msa0376690;Name=Msa0376690
chr3_1 mRNA 76805372 76808965 76805372 ID=Msa0376690-mRNA-1;Parent=Msa0376690;Name=Msa0376690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=94|0.85|0.87|1|0.57|0.75|8|323|223
chr3_1 exon 76805372 76805812 76805372 ID=Msa0376690-mRNA-1:exon:18322;Parent=Msa0376690-mRNA-1
chr3_1 exon 76806043 76806132 76806043 ID=Msa0376690-mRNA-1:exon:18321;Parent=Msa0376690-mRNA-1
chr3_1 exon 76806533 76806600 76806533 ID=Msa0376690-mRNA-1:exon:18320;Parent=Msa0376690-mRNA-1
chr3_1 exon 76806706 76806842 76806706 ID=Msa0376690-mRNA-1:exon:18319;Parent=Msa0376690-mRNA-1
chr3_1 exon 76807918 76808015 76807918 ID=Msa0376690-mRNA-1:exon:18318;Parent=Msa0376690-mRNA-1
chr3_1 exon 76808119 76808186 76808119 ID=Msa0376690-mRNA-1:exon:18317;Parent=Msa0376690-mRNA-1
chr3_1 exon 76808444 76808525 76808444 ID=Msa0376690-mRNA-1:exon:18316;Parent=Msa0376690-mRNA-1
chr3_1 exon 76808861 76808965 76808861 ID=Msa0376690-mRNA-1:exon:18315;Parent=Msa0376690-mRNA-1
chr3_1 five_prime_UTR 76808872 76808965 76808872 ID=Msa0376690-mRNA-1:five_prime_utr;Parent=Msa0376690-mRNA-1
chr3_1 CDS 76808861 76808871 76808861 ID=Msa0376690-mRNA-1:cds;Parent=Msa0376690-mRNA-1
chr3_1 CDS 76808444 76808525 76808444 ID=Msa0376690-mRNA-1:cds;Parent=Msa0376690-mRNA-1
chr3_1 CDS 76808119 76808186 76808119 ID=Msa0376690-mRNA-1:cds;Parent=Msa0376690-mRNA-1
chr3_1 CDS 76807918 76808015 76807918 ID=Msa0376690-mRNA-1:cds;Parent=Msa0376690-mRNA-1
chr3_1 CDS 76806706 76806842 76806706 ID=Msa0376690-mRNA-1:cds;Parent=Msa0376690-mRNA-1
chr3_1 CDS 76806533 76806600 76806533 ID=Msa0376690-mRNA-1:cds;Parent=Msa0376690-mRNA-1
chr3_1 CDS 76806043 76806132 76806043 ID=Msa0376690-mRNA-1:cds;Parent=Msa0376690-mRNA-1
chr3_1 CDS 76805695 76805812 76805695 ID=Msa0376690-mRNA-1:cds;Parent=Msa0376690-mRNA-1
chr3_1 three_prime_UTR 76805372 76805694 76805372 ID=Msa0376690-mRNA-1:three_prime_utr;Parent=Msa0376690-mRNA-1
Gene Sequence

>Msa0376690

ATGTTCAAAAAATTTTCATCTGAAGAGGTGTCTGCACAGAATCAAGTGAAAGCATCTGTTCAAAGAAGAATACGTCAAAGTATTGCAGATGAGTATCCAGGACTTGAACCAGTGTTGGATGATATACTTCCCAAGAAGTCACCTCTTATAGTTGCTAAATGTCAGAACCATCTCAATCTGGTTGTGGTGAACAATGTGCCTTTGTTTTTTAGTGTTCGTGATGGTCCGTACATGCCTACCTTGCGACTTCTCCATCAATATCCAGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTTTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTCTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGCCATCATGGCTGAAGGAAAACAGCATGCCCTTGCCATTGGATTTACAAAAATGTCAGCAAAAGACATAAGTTCAACTACTTTCGTGGTTTCAGAAAAGCAATCAACAAGGGAATTGGGGTCGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATGGAGCGATTTGATTGAAGATGTTGCAACTTGCGAGAGCCGCGATGCCAACTTAGGGATGCAGTCCTGTTTTCTGGAACTTGATCCAGATTTTAGGGATCATAAGCGAACCTGCTAG

Protein sequence

>Msa0376690

MFKKFSSEEVSAQNQVKASVQRRIRQSIADEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVVVNNVPLFFSVRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDISSTTFVVSEKQSTRELGSTTCIISMMVFGRWSDLIEDVATCESRDANLGMQSCFLELDPDFRDHKRTC*