AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0994660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994660 MtrunA17_Chr6g0478481 95.976 497 10 1 1 487 1 497 0.0 991
Msa0994660 MtrunA17_Chr8g0393121 78.024 496 96 3 1 486 1 493 0.0 777
Msa0994660 MtrunA17_Chr1g0150551 33.019 106 69 1 280 383 130 235 1.04e-12 69.3
Msa0994660 MtrunA17_Chr3g0089671 31.034 116 78 1 270 383 86 201 9.67e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994660 AT1G73600.1 70.041 484 135 1 13 486 6 489 0.0 729
Msa0994660 AT1G73600.2 70.041 484 135 1 13 486 20 503 0.0 728
Msa0994660 AT3G18000.1 69.796 490 138 1 7 486 1 490 0.0 726
Msa0994660 AT1G48600.2 69.959 486 136 1 12 487 6 491 0.0 719
Msa0994660 AT1G48600.1 70.464 474 130 1 24 487 2 475 0.0 703
Msa0994660 AT5G13710.1 29.697 165 103 4 249 401 55 218 4.46e-13 70.9
Msa0994660 AT5G13710.2 29.697 165 103 4 249 401 55 218 4.46e-13 70.9
Msa0994660 AT1G64970.1 29.808 104 71 1 282 383 130 233 3.00e-11 65.5

Find 105 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTCTATGAACATGTTTA+TGG 0.190932 6_4:-69753512 Msa0994660:CDS
CCTTACTTTGATGTGTAATA+AGG 0.192732 6_4:+69752784 None:intergenic
TTTACCTATTACTCTTATTA+TGG 0.214729 6_4:-69751169 Msa0994660:three_prime_UTR
TGCTGTTGATCAAACCAATT+TGG 0.240782 6_4:-69752034 Msa0994660:intron
TTGATTTGATATTCTCAAAT+TGG 0.248443 6_4:-69754698 Msa0994660:CDS
AGCTAGAGAAATCATGTTTA+TGG 0.260404 6_4:+69752913 None:intergenic
CTTCTCCATTCTCTCATATA+TGG 0.261877 6_4:-69757909 Msa0994660:exon
TCTCTCATATATGGCTAGTT+TGG 0.281400 6_4:-69757900 Msa0994660:exon
TCCTTTGAGCTTTCTCTTGT+GGG 0.294619 6_4:-69753787 Msa0994660:CDS
GTGTAGCTGGTGAGCAGATA+TGG 0.296797 6_4:-69751357 Msa0994660:CDS
CTAGATGTTGGTTGTGGTAT+TGG 0.308873 6_4:-69752995 Msa0994660:CDS
GAAACCATAATAAGAGTAAT+AGG 0.323222 6_4:+69751165 None:intergenic
TGGAAGATTTACAGCTGAAT+TGG 0.333381 6_4:-69755338 Msa0994660:CDS
TTTCATTGATGATTTCTCTA+AGG 0.333888 6_4:-69751876 Msa0994660:intron
TCATGCAGATTTGTTGGATA+TGG 0.335290 6_4:-69753610 Msa0994660:intron
TTGCAGAATGAAAATACTAA+TGG 0.336708 6_4:-69754792 Msa0994660:intron
CCTTCAGAAATATGCAAGTT+TGG 0.346855 6_4:+69754726 None:intergenic
AATACAATCCAACTCACTAT+AGG 0.347505 6_4:-69754287 Msa0994660:CDS
GAGTGTGTTACAAACCAAAT+TGG 0.356467 6_4:+69752020 None:intergenic
GAATCTTGTTTCCACCAATC+TGG 0.358429 6_4:-69754324 Msa0994660:CDS
TCTTTGTCATGCAGATTTGT+TGG 0.362351 6_4:-69753616 Msa0994660:intron
GTTAAATCACAAGATGATAG+AGG 0.369519 6_4:-69753581 Msa0994660:CDS
GTCTCTCTTCTTTGTCGAGA+TGG 0.371915 6_4:+69757568 None:intergenic
CTCCTTTGAGCTTTCTCTTG+TGG 0.372126 6_4:-69753788 Msa0994660:CDS
GAGTTAATATATATACTCTT+TGG 0.372616 6_4:-69758329 Msa0994660:five_prime_UTR
ATACAATCCAACTCACTATA+GGG 0.384922 6_4:-69754286 Msa0994660:CDS
AGGGAAATTGTGGCAAAGTT+AGG 0.389582 6_4:-69753040 Msa0994660:CDS
TTAGAGCTTGGAGCAGGTAT+TGG 0.405980 6_4:-69755358 Msa0994660:CDS
AGGTCTCTTTCATATGTTGA+TGG 0.407825 6_4:-69758032 Msa0994660:five_prime_UTR
CAAACCTTAGTGTAAAATCT+TGG 0.408255 6_4:+69754261 None:intergenic
CATAGAGTAATATATCCTTA+TGG 0.408848 6_4:+69753525 None:intergenic
CCTCCACCCTTTCCTTGAAC+AGG 0.410237 6_4:+69758052 None:intergenic
GTCAAATGGTTAAATGTTGA+TGG 0.412539 6_4:-69754363 Msa0994660:CDS
TGACATGAAAGCATATTATC+AGG 0.414876 6_4:-69752545 Msa0994660:intron
GTGAAGTGCAAAGAAGTTAC+TGG 0.416072 6_4:-69757647 Msa0994660:CDS
TCTCTCTTCTTTGTCGAGAT+GGG 0.418673 6_4:+69757569 None:intergenic
TCACAGATGCTTGAGAATGC+TGG 0.438992 6_4:-69752072 Msa0994660:intron
TTCTCTTTGAATCTCCAGAT+TGG 0.440419 6_4:+69754310 None:intergenic
GTTCTTGAAAACTCTACAAA+TGG 0.442389 6_4:-69751930 Msa0994660:CDS
CAAGGGCTATAGCTTATAGA+AGG 0.452900 6_4:-69757984 Msa0994660:five_prime_UTR
TGTCATATGAGTGATGATAA+TGG 0.457058 6_4:-69753814 Msa0994660:CDS
TTTGTGAGCACAGGAGGACT+TGG 0.457900 6_4:-69753482 Msa0994660:intron
TGTAGCTGGTGAGCAGATAT+GGG 0.458742 6_4:-69751356 Msa0994660:CDS
TGAAGTCCACAGCAAGCAAT+TGG 0.460367 6_4:+69755302 None:intergenic
TAGCTGAAAGGATGGTCAAA+TGG 0.462289 6_4:-69754377 Msa0994660:CDS
TAAAATGATCTGAACAATGT+TGG 0.463358 6_4:+69752679 None:intergenic
GTCATATGAGTGATGATAAT+GGG 0.464751 6_4:-69753813 Msa0994660:CDS
ATAATGAAATTGTTGAAAGA+TGG 0.474872 6_4:-69751399 Msa0994660:CDS
TCTTTGAATCTCCAGATTGG+TGG 0.475051 6_4:+69754313 None:intergenic
AAATAAGAAGAATCAAAATC+AGG 0.476569 6_4:-69753737 Msa0994660:intron
CTTGCATATTTCTGAAGGAT+CGG 0.493828 6_4:-69754721 Msa0994660:CDS
GCTGAATTGGCTCAGAAAGC+TGG 0.494705 6_4:-69755325 Msa0994660:CDS
GAGCTTTCCTAAAATGAAAC+GGG 0.498984 6_4:-69758154 Msa0994660:five_prime_UTR
TGAGCTTTCCTAAAATGAAA+CGG 0.500395 6_4:-69758155 Msa0994660:five_prime_UTR
CTTGGTTCCCTATAGTGAGT+TGG 0.500725 6_4:+69754279 None:intergenic
TATGAACATGTTTATGGTCA+AGG 0.501805 6_4:-69753506 Msa0994660:CDS
ACTAGCCATATATGAGAGAA+TGG 0.502014 6_4:+69757904 None:intergenic
CATTTACTTCCATATAAAAG+AGG 0.504157 6_4:+69751197 None:intergenic
ACAAGAGGTGATCCTGTTCA+AGG 0.507817 6_4:-69758064 Msa0994660:five_prime_UTR
TCTCTATTACCAGCATATGA+AGG 0.509429 6_4:-69755391 Msa0994660:CDS
GATAATATGCTTTCATGTCA+TGG 0.509905 6_4:+69752548 None:intergenic
AATCAACCTTCTTGTTCTCA+AGG 0.512925 6_4:+69751897 None:intergenic
ACTGACTATTGCAAAAGTGT+TGG 0.520445 6_4:-69752622 Msa0994660:CDS
TTGAACAGGATCACCTCTTG+TGG 0.523966 6_4:+69758066 None:intergenic
CTAGCTATCGAACGTGCCAT+CGG 0.524887 6_4:-69752896 Msa0994660:CDS
AAGCAGATGAGAGGTGTAGC+TGG 0.525626 6_4:-69751370 Msa0994660:CDS
CATGTATCTTTCAGATGAAG+AGG 0.527858 6_4:-69754670 Msa0994660:intron
CCAAACTTGCATATTTCTGA+AGG 0.528360 6_4:-69754726 Msa0994660:CDS
GTTATATATAAGAAATTACA+AGG 0.529056 6_4:-69758002 Msa0994660:five_prime_UTR
GGTGATCCTGTTCAAGGAAA+GGG 0.529788 6_4:-69758058 Msa0994660:five_prime_UTR
GGTCAAGGCTTTGTGAGCAC+AGG 0.534562 6_4:-69753491 Msa0994660:CDS
TAGTGTTGAGTATAACCATA+AGG 0.541790 6_4:-69753540 Msa0994660:CDS
GTAATTAAAAGTGTACCTCC+AGG 0.542732 6_4:+69752643 None:intergenic
CAACACAATTATTAATGGAA+AGG 0.543112 6_4:+69751248 None:intergenic
CTCTTCTTTGTCGAGATGGG+AGG 0.545903 6_4:+69757572 None:intergenic
GTTGGTTGTGGTATTGGAGG+AGG 0.549538 6_4:-69752989 Msa0994660:CDS
CTTGTGGGATGCAAATGCAT+TGG 0.550546 6_4:-69753772 Msa0994660:CDS
CAAGGCTTTGTGAGCACAGG+AGG 0.555847 6_4:-69753488 Msa0994660:CDS
GATGTTGGTTGTGGTATTGG+AGG 0.557635 6_4:-69752992 Msa0994660:CDS
TACTGCATATTTGAGTCCGA+TGG 0.562209 6_4:+69752880 None:intergenic
AGGTGATCCTGTTCAAGGAA+AGG 0.562810 6_4:-69758059 Msa0994660:five_prime_UTR
ATCAACCTTCTTGTTCTCAA+GGG 0.563447 6_4:+69751898 None:intergenic
TTAAATCACAAGATGATAGA+GGG 0.564358 6_4:-69753580 Msa0994660:CDS
AGAAACAACAAGGGAAATTG+TGG 0.570096 6_4:-69753050 Msa0994660:CDS
TCATTCAATAATAATATATG+TGG 0.570572 6_4:-69758273 Msa0994660:five_prime_UTR
ATTCTTGAGCAGAAACAACA+AGG 0.575658 6_4:-69753060 Msa0994660:intron
AGAAATGAAAGAGTACTCAA+TGG 0.578756 6_4:+69757947 None:intergenic
TGAAATTGTTGAAAGATGGA+AGG 0.578969 6_4:-69751395 Msa0994660:CDS
AAATGCCCTTGAGAACAAGA+AGG 0.581850 6_4:-69751903 Msa0994660:CDS
CCTGTTCAAGGAAAGGGTGG+AGG 0.587703 6_4:-69758052 Msa0994660:five_prime_UTR
AAAGTACTAGATGTTGGTTG+TGG 0.613287 6_4:-69753001 Msa0994660:CDS
GAGAAATCATGTTTATGGAG+AGG 0.618544 6_4:+69752918 None:intergenic
TGACGGAGAAAGTATATGTG+TGG 0.628755 6_4:-69758181 Msa0994660:five_prime_UTR
AAGATGATAGAGGGTTTCAA+CGG 0.629674 6_4:-69753571 Msa0994660:CDS
GATCCTGTTCAAGGAAAGGG+TGG 0.633868 6_4:-69758055 Msa0994660:five_prime_UTR
TGGAAGGCTAAGCAGATGAG+AGG 0.635467 6_4:-69751379 Msa0994660:CDS
TTCTTGAGCAGAAACAACAA+GGG 0.645125 6_4:-69753059 Msa0994660:intron
ACATGAACTTGACATTCTTG+TGG 0.645945 6_4:+69754766 None:intergenic
AGTTTGGAAGCAATGAAACA+AGG 0.646586 6_4:-69757884 Msa0994660:intron
GCAAAGTTAGGACTAAAGCC+AGG 0.647033 6_4:-69753028 Msa0994660:CDS
TCCCACAAGAGAAAGCTCAA+AGG 0.650134 6_4:+69753786 None:intergenic
GACGGAGAAAGTATATGTGT+GGG 0.661351 6_4:-69758180 Msa0994660:five_prime_UTR
TATAAGTGGTTGAAGCCTGG+AGG 0.668799 6_4:-69752658 Msa0994660:CDS
GTAGCTGGTGAGCAGATATG+GGG 0.669642 6_4:-69751355 Msa0994660:CDS
TTATATATAAGAAATTACAA+GGG 0.746498 6_4:-69758001 Msa0994660:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAAATAATTAAT+AGG + chr6_4:69753908-69753927 None:intergenic 0.0%
!! TTATATATAAGAAATTACAA+GGG - chr6_4:69751408-69751427 Msa0994660:CDS 10.0%
!!! AAAAAAAGTATATTTTTTGA+AGG + chr6_4:69751986-69752005 None:intergenic 10.0%
!!! TAACAAGTTAATTTTTTTAA+GGG + chr6_4:69752130-69752149 None:intergenic 10.0%
!!! TTAACAAGTTAATTTTTTTA+AGG + chr6_4:69752131-69752150 None:intergenic 10.0%
!! TTGATATAGTATATTAAAAT+AGG + chr6_4:69753324-69753343 None:intergenic 10.0%
!! TAAAAAAAAATAAATAGAAG+TGG + chr6_4:69753732-69753751 None:intergenic 10.0%
!! AAATAAGTTAAAAATATGAT+TGG + chr6_4:69753776-69753795 None:intergenic 10.0%
!!! CAAAAAAGATTTTTTTTTTT+TGG + chr6_4:69756672-69756691 None:intergenic 10.0%
!! TTAATAAATGTTCTATATAT+AGG - chr6_4:69756702-69756721 Msa0994660:intron 10.0%
!! AATTTGATATGTAATAATTT+AGG - chr6_4:69756965-69756984 Msa0994660:intron 10.0%
!! ATTTGATATGTAATAATTTA+GGG - chr6_4:69756966-69756985 Msa0994660:intron 10.0%
!!! TATTTTTTGTTATAAACTTT+AGG - chr6_4:69757669-69757688 Msa0994660:intron 10.0%
!! TCATTCAATAATAATATATG+TGG - chr6_4:69751136-69751155 Msa0994660:three_prime_UTR 15.0%
!! GTTATATATAAGAAATTACA+AGG - chr6_4:69751407-69751426 Msa0994660:CDS 15.0%
!! TATATATCATACATAGATTA+AGG - chr6_4:69751676-69751695 Msa0994660:intron 15.0%
!!! ATAATTGTAATGATTTTTTC+AGG - chr6_4:69751725-69751744 Msa0994660:intron 15.0%
!! TTTAATAAATTGTAGTTACT+TGG - chr6_4:69752216-69752235 Msa0994660:intron 15.0%
!! CCTAAATATACATTTAAATT+GGG + chr6_4:69752469-69752488 None:intergenic 15.0%
!! CCAATTTAAATGTATATTTA+GGG - chr6_4:69752467-69752486 Msa0994660:intron 15.0%
!!! TCTTTTATGTTGTTAATTAT+AGG - chr6_4:69753470-69753489 Msa0994660:intron 15.0%
!! TACTAACTAAATTATGTTTA+CGG - chr6_4:69753679-69753698 Msa0994660:intron 15.0%
!!! TTAACATGTTATTTTCTAAT+TGG - chr6_4:69753873-69753892 Msa0994660:intron 15.0%
!!! ATCTATTTTAAATTACACAT+AGG - chr6_4:69753990-69754009 Msa0994660:intron 15.0%
!! GGTATTTATCAAAATAAAAT+TGG - chr6_4:69754544-69754563 Msa0994660:intron 15.0%
!! TATGTAAGAATTCTAATAAA+TGG + chr6_4:69756095-69756114 None:intergenic 15.0%
!! ATATAATTACATTAACAACA+AGG + chr6_4:69756897-69756916 None:intergenic 15.0%
!!! TCTTTTCTTTTTAACATATA+TGG - chr6_4:69756918-69756937 Msa0994660:intron 15.0%
!!! TGATTTTTTCAAATTATTAG+TGG + chr6_4:69757093-69757112 None:intergenic 15.0%
!!! AAAAATATGATTTTCAAGTA+AGG + chr6_4:69757229-69757248 None:intergenic 15.0%
!! TACTATAAAACAAAGTAATA+AGG + chr6_4:69757414-69757433 None:intergenic 15.0%
!!! TTTTTGAAATCTTCATTTTT+AGG - chr6_4:69757981-69758000 Msa0994660:five_prime_UTR 15.0%
!! AAAAACAACACAATTATTAA+TGG + chr6_4:69758169-69758188 None:intergenic 15.0%
!! TAAAGTTTGATTGATACATA+TGG - chr6_4:69752032-69752051 Msa0994660:intron 20.0%
!! AAAGTTTGATTGATACATAT+GGG - chr6_4:69752033-69752052 Msa0994660:intron 20.0%
!!! TACTTGGTGTTAATTATATT+TGG - chr6_4:69752232-69752251 Msa0994660:intron 20.0%
!! CAATATGAATCCAATATTTA+TGG - chr6_4:69752327-69752346 Msa0994660:intron 20.0%
!!! TTTAAATTGGGTTTTTTAGT+AGG + chr6_4:69752457-69752476 None:intergenic 20.0%
!! CCCAATTTAAATGTATATTT+AGG - chr6_4:69752466-69752485 Msa0994660:intron 20.0%
!! CCCTAAATATACATTTAAAT+TGG + chr6_4:69752470-69752489 None:intergenic 20.0%
!!! TTTTTGTCTTGTATTACAAT+TGG - chr6_4:69752575-69752594 Msa0994660:CDS 20.0%
!!! CTAATATGTATTTTAAAGAG+AGG - chr6_4:69752841-69752860 Msa0994660:CDS 20.0%
!!! CTTCTTTTAATTTAACTAAG+TGG - chr6_4:69752965-69752984 Msa0994660:CDS 20.0%
!! AAGATAAAATTCGATATATG+TGG + chr6_4:69752994-69753013 None:intergenic 20.0%
!!! TTTGATTTACCATTTTGTTT+CGG - chr6_4:69753081-69753100 Msa0994660:intron 20.0%
!! TCGTTGTATATTATTAACTT+TGG - chr6_4:69753241-69753260 Msa0994660:intron 20.0%
!! CAAATTAGTAAAATGTAGAT+CGG + chr6_4:69753427-69753446 None:intergenic 20.0%
!!! GATCTACATTTTACTAATTT+GGG - chr6_4:69753426-69753445 Msa0994660:intron 20.0%
!!! ATCTACATTTTACTAATTTG+GGG - chr6_4:69753427-69753446 Msa0994660:intron 20.0%
!! ACAACATAAAAGAAAATTGT+GGG + chr6_4:69753463-69753482 None:intergenic 20.0%
!! AACAACATAAAAGAAAATTG+TGG + chr6_4:69753464-69753483 None:intergenic 20.0%
!!! TTGAATTTTATGAAGTAGTT+TGG - chr6_4:69753597-69753616 Msa0994660:CDS 20.0%
!! ACTAACTAAATTATGTTTAC+GGG - chr6_4:69753680-69753699 Msa0994660:intron 20.0%
!! AACATTTGCCTATATTTATA+GGG + chr6_4:69754175-69754194 None:intergenic 20.0%
!! TAACATTTGCCTATATTTAT+AGG + chr6_4:69754176-69754195 None:intergenic 20.0%
!!! TCAACTTTTGTTCTTTTTTA+TGG - chr6_4:69754272-69754291 Msa0994660:CDS 20.0%
!! AAACAATAACATGTCTAATA+GGG + chr6_4:69754467-69754486 None:intergenic 20.0%
!! AAAATATCGTATGATATTCA+GGG + chr6_4:69754598-69754617 None:intergenic 20.0%
!! AAAAATATCGTATGATATTC+AGG + chr6_4:69754599-69754618 None:intergenic 20.0%
!!! TTGATTTGATATTCTCAAAT+TGG - chr6_4:69754711-69754730 Msa0994660:CDS 20.0%
!!! AGTTTTTTGTTTTTCTATGA+AGG - chr6_4:69754764-69754783 Msa0994660:CDS 20.0%
!! TAATTAGACACATACATTAA+GGG + chr6_4:69754961-69754980 None:intergenic 20.0%
!!! TTTTTTCCTTGATTAATTTC+AGG - chr6_4:69755000-69755019 Msa0994660:intron 20.0%
!!! TTTTAACCTGAAATTAATCA+AGG + chr6_4:69755009-69755028 None:intergenic 20.0%
!! TATAATCAAACAATTGTTGT+TGG + chr6_4:69755204-69755223 None:intergenic 20.0%
!! AAATAAGAAGAATCAAAATC+AGG - chr6_4:69755672-69755691 Msa0994660:intron 20.0%
!! AAAGGAATTATATATCATTG+AGG + chr6_4:69755967-69755986 None:intergenic 20.0%
!! ATATATAATTCCTTTCCTTT+AGG - chr6_4:69755972-69755991 Msa0994660:intron 20.0%
!!! ATTTAAAACAATGTTCCTAA+AGG + chr6_4:69755990-69756009 None:intergenic 20.0%
!! TTCAATGTAATTAAATGTGT+CGG - chr6_4:69757118-69757137 Msa0994660:intron 20.0%
!!! GTTATAAACTTTAGGAAAAT+TGG - chr6_4:69757677-69757696 Msa0994660:intron 20.0%
!! ATTATTAAAATCGAGAGTTT+AGG + chr6_4:69757763-69757782 None:intergenic 20.0%
!! TACATCAAAATTTAAGAGTT+TGG + chr6_4:69757927-69757946 None:intergenic 20.0%
!! ATAATGAAATTGTTGAAAGA+TGG - chr6_4:69758010-69758029 Msa0994660:five_prime_UTR 20.0%
!!! AAAGAAACATCATTTTTTCT+TGG + chr6_4:69758091-69758110 None:intergenic 20.0%
!! TTTACCTATTACTCTTATTA+TGG - chr6_4:69758240-69758259 Msa0994660:five_prime_UTR 20.0%
!!! TTATTTTTGTTTTCCACAAG+AGG - chr6_4:69751330-69751349 Msa0994660:CDS 25.0%
!!! ATTGTAATGATTTTTTCAGG+TGG - chr6_4:69751728-69751747 Msa0994660:intron 25.0%
!!! TGAATACGCACATTTTTTAA+TGG + chr6_4:69752160-69752179 None:intergenic 25.0%
! TTAAAAAATGTGCGTATTCA+AGG - chr6_4:69752160-69752179 Msa0994660:intron 25.0%
!! TGGTGTTAATTATATTTGGA+TGG - chr6_4:69752236-69752255 Msa0994660:intron 25.0%
! GAATCCAATATTTATGGATT+TGG - chr6_4:69752333-69752352 Msa0994660:intron 25.0%
! TGATCCAAATCCATAAATAT+TGG + chr6_4:69752340-69752359 None:intergenic 25.0%
!!! TTATTTTGAACCAGTCTAAA+TGG - chr6_4:69752404-69752423 Msa0994660:intron 25.0%
!!! TATTTTGAACCAGTCTAAAT+GGG - chr6_4:69752405-69752424 Msa0994660:intron 25.0%
!!! CCAATTTTATCGTGTTTTAA+CGG - chr6_4:69752431-69752450 Msa0994660:intron 25.0%
! ACAACTTGAATTAGAGATAA+AGG - chr6_4:69752621-69752640 Msa0994660:CDS 25.0%
! CAACTTGAATTAGAGATAAA+GGG - chr6_4:69752622-69752641 Msa0994660:CDS 25.0%
!!! GTAAGATTTTGAGTTTAAAC+TGG - chr6_4:69752667-69752686 Msa0994660:CDS 25.0%
! TGCATTTGATATGCTAAAAA+AGG + chr6_4:69752718-69752737 None:intergenic 25.0%
! AATAATATGATATGACACAC+TGG + chr6_4:69752790-69752809 None:intergenic 25.0%
!! CGATCTACATTTTACTAATT+TGG - chr6_4:69753425-69753444 Msa0994660:intron 25.0%
! AACATAAAAGAAAATTGTGG+GGG + chr6_4:69753461-69753480 None:intergenic 25.0%
! CAACATAAAAGAAAATTGTG+GGG + chr6_4:69753462-69753481 None:intergenic 25.0%
!!! ACTTTTTAGAGTGAATAAGT+GGG - chr6_4:69753632-69753651 Msa0994660:intron 25.0%
!! TATTTTCTAATTGGAGAACA+AGG - chr6_4:69753882-69753901 Msa0994660:intron 25.0%
! TTGATTACCCCTATAAATAT+AGG - chr6_4:69754164-69754183 Msa0994660:intron 25.0%
! ACATTTGCCTATATTTATAG+GGG + chr6_4:69754174-69754193 None:intergenic 25.0%
!! GGTGCTACATATATATTTAT+GGG + chr6_4:69754354-69754373 None:intergenic 25.0%
!!! TGGTGCTACATATATATTTA+TGG + chr6_4:69754355-69754374 None:intergenic 25.0%
! CAAACAATAACATGTCTAAT+AGG + chr6_4:69754468-69754487 None:intergenic 25.0%
!!! ATGAAGTATTGAATCAGATA+CGG + chr6_4:69754506-69754525 None:intergenic 25.0%
! CATAGCTACATATTTATGAT+TGG - chr6_4:69754523-69754542 Msa0994660:intron 25.0%
! TTGCAGAATGAAAATACTAA+TGG - chr6_4:69754617-69754636 Msa0994660:intron 25.0%
! ATTCTAAATTTGAGTCATCA+TGG + chr6_4:69754925-69754944 None:intergenic 25.0%
! GTAATTAGACACATACATTA+AGG + chr6_4:69754962-69754981 None:intergenic 25.0%
! TGTCTAATTACTTCTTGTTA+AGG - chr6_4:69754971-69754990 Msa0994660:intron 25.0%
! AGGTTAAAAATTTAGCTGAA+AGG - chr6_4:69755020-69755039 Msa0994660:intron 25.0%
! TAAAAATTTAGCTGAAAGGA+TGG - chr6_4:69755024-69755043 Msa0994660:intron 25.0%
! CAATTGTTTGATTATAGATG+AGG - chr6_4:69755208-69755227 Msa0994660:intron 25.0%
! GATATTATTGTGAACTTTGA+TGG - chr6_4:69755431-69755450 Msa0994660:intron 25.0%
! TAGAAAATAAAGCTTATGCA+TGG + chr6_4:69755508-69755527 None:intergenic 25.0%
! TTAAATACCTACACGAAAAA+GGG + chr6_4:69755571-69755590 None:intergenic 25.0%
! TTTAAATACCTACACGAAAA+AGG + chr6_4:69755572-69755591 None:intergenic 25.0%
! TTAAATCACAAGATGATAGA+GGG - chr6_4:69755829-69755848 Msa0994660:intron 25.0%
! CATAGAGTAATATATCCTTA+TGG + chr6_4:69755887-69755906 None:intergenic 25.0%
! TTACTCTATGAACATGTTTA+TGG - chr6_4:69755897-69755916 Msa0994660:intron 25.0%
! TAAAATGATCTGAACAATGT+TGG + chr6_4:69756733-69756752 None:intergenic 25.0%
!! TGTTCAGATCATTTTATAAG+TGG - chr6_4:69756737-69756756 Msa0994660:intron 25.0%
! ACAACACAAGGATAATAAAA+TGG + chr6_4:69757437-69757456 None:intergenic 25.0%
! AAAATTGTTAGAACAACACA+AGG + chr6_4:69757449-69757468 None:intergenic 25.0%
!! TTTCATTGATGATTTCTCTA+AGG - chr6_4:69757533-69757552 Msa0994660:intron 25.0%
! TTATGCAAGTTTACAATTGT+TGG - chr6_4:69757610-69757629 Msa0994660:CDS 25.0%
!! CTGTTTTCAAATATCTGTAT+AGG - chr6_4:69757837-69757856 Msa0994660:intron 25.0%
! CAACACAATTATTAATGGAA+AGG + chr6_4:69758164-69758183 None:intergenic 25.0%
!!! TAATTGTGTTGTTTTTAGCT+TGG - chr6_4:69758173-69758192 Msa0994660:five_prime_UTR 25.0%
! CATTTACTTCCATATAAAAG+AGG + chr6_4:69758215-69758234 None:intergenic 25.0%
! GAAACCATAATAAGAGTAAT+AGG + chr6_4:69758247-69758266 None:intergenic 25.0%
!!! AACTCTCTTTTCTTTTAGAA+GGG + chr6_4:69758327-69758346 None:intergenic 25.0%
!! AAACTCTCTTTTCTTTTAGA+AGG + chr6_4:69758328-69758347 None:intergenic 25.0%
TGAGCTTTCCTAAAATGAAA+CGG - chr6_4:69751254-69751273 Msa0994660:three_prime_UTR 30.0%
! TTAAGTACCCGTTTCATTTT+AGG + chr6_4:69751265-69751284 None:intergenic 30.0%
!! AGAAATGAAAGAGTACTCAA+TGG + chr6_4:69751465-69751484 None:intergenic 30.0%
! ATCAAAAAGTACAACGTTGT+TGG - chr6_4:69751599-69751618 Msa0994660:intron 30.0%
AAATTAGTAGCACATACTTC+GGG + chr6_4:69751866-69751885 None:intergenic 30.0%
GAAATTAGTAGCACATACTT+CGG + chr6_4:69751867-69751886 None:intergenic 30.0%
TCAGTTAGTTGTATAGGATT+AGG + chr6_4:69751895-69751914 None:intergenic 30.0%
GAATAGTCAGTTAGTTGTAT+AGG + chr6_4:69751901-69751920 None:intergenic 30.0%
! ATAGTTTTTCGTCATGAATG+TGG + chr6_4:69752082-69752101 None:intergenic 30.0%
CCGTTAAAACACGATAAAAT+TGG + chr6_4:69752434-69752453 None:intergenic 30.0%
! TATTTAGGGTGTGTTTGATA+CGG - chr6_4:69752481-69752500 Msa0994660:intron 30.0%
TTGTCTTGTATTACAATTGG+TGG - chr6_4:69752578-69752597 Msa0994660:CDS 30.0%
GGTTGTATTGTGGTTTATTA+AGG - chr6_4:69752643-69752662 Msa0994660:CDS 30.0%
AGAAAGATAACTTAGAGAGA+AGG + chr6_4:69752874-69752893 None:intergenic 30.0%
AAGAGAAAGAAGATGCATTA+GGG + chr6_4:69752948-69752967 None:intergenic 30.0%
! TTTGGTTTCTATTGAAAGAC+TGG - chr6_4:69753110-69753129 Msa0994660:intron 30.0%
GACTAGAATATTCATGTCTT+TGG + chr6_4:69753187-69753206 None:intergenic 30.0%
!!! CTTTTTAGTTTCATGTAGTG+GGG + chr6_4:69753528-69753547 None:intergenic 30.0%
!!! GCTTTTTAGTTTCATGTAGT+GGG + chr6_4:69753529-69753548 None:intergenic 30.0%
!!! AGCTTTTTAGTTTCATGTAG+TGG + chr6_4:69753530-69753549 None:intergenic 30.0%
!!! CACTTTTTAGAGTGAATAAG+TGG - chr6_4:69753631-69753650 Msa0994660:intron 30.0%
! CTTTTCTTTTGGTAAAGAGA+CGG + chr6_4:69753825-69753844 None:intergenic 30.0%
! CAATTATGAGCCTTTTCTTT+TGG + chr6_4:69753836-69753855 None:intergenic 30.0%
ATTCTCTAATATATGCCCTT+GGG + chr6_4:69754207-69754226 None:intergenic 30.0%
AATTCTCTAATATATGCCCT+TGG + chr6_4:69754208-69754227 None:intergenic 30.0%
GACTTCATTTAATCCAAATC+CGG + chr6_4:69754800-69754819 None:intergenic 30.0%
CATACATTAAGGGACAAAAA+TGG + chr6_4:69754951-69754970 None:intergenic 30.0%
GTCAAATGGTTAAATGTTGA+TGG - chr6_4:69755046-69755065 Msa0994660:intron 30.0%
AATACAATCCAACTCACTAT+AGG - chr6_4:69755122-69755141 Msa0994660:intron 30.0%
ATACAATCCAACTCACTATA+GGG - chr6_4:69755123-69755142 Msa0994660:intron 30.0%
CAAACCTTAGTGTAAAATCT+TGG + chr6_4:69755151-69755170 None:intergenic 30.0%
!! TCATCGACTTAATTTAGACT+CGG - chr6_4:69755234-69755253 Msa0994660:intron 30.0%
AAGTCAAACATGTTAATGAC+CGG - chr6_4:69755374-69755393 Msa0994660:CDS 30.0%
GATGGTAAAGACATGTTATA+AGG - chr6_4:69755449-69755468 Msa0994660:intron 30.0%
AAAGACATGTTATAAGGACA+TGG - chr6_4:69755455-69755474 Msa0994660:intron 30.0%
TGTCATATGAGTGATGATAA+TGG - chr6_4:69755595-69755614 Msa0994660:intron 30.0%
GTCATATGAGTGATGATAAT+GGG - chr6_4:69755596-69755615 Msa0994660:intron 30.0%
GTTAAATCACAAGATGATAG+AGG - chr6_4:69755828-69755847 Msa0994660:intron 30.0%
! TAGTGTTGAGTATAACCATA+AGG - chr6_4:69755869-69755888 Msa0994660:intron 30.0%
TATGAACATGTTTATGGTCA+AGG - chr6_4:69755903-69755922 Msa0994660:intron 30.0%
AAACAATGTTCCTAAAGGAA+AGG + chr6_4:69755985-69756004 None:intergenic 30.0%
TTTAGCTAGATTTGCAAAAG+TGG - chr6_4:69756014-69756033 Msa0994660:intron 30.0%
! CTCTAAATAGCACTTTTACT+CGG - chr6_4:69756157-69756176 Msa0994660:intron 30.0%
GCAAATAATCGACATGAAAT+CGG + chr6_4:69756241-69756260 None:intergenic 30.0%
AGCTAGAGAAATCATGTTTA+TGG + chr6_4:69756499-69756518 None:intergenic 30.0%
! ATTACATCGAATGTTTTCTC+AGG + chr6_4:69756591-69756610 None:intergenic 30.0%
CCTTACTTTGATGTGTAATA+AGG + chr6_4:69756628-69756647 None:intergenic 30.0%
CCTTATTACACATCAAAGTA+AGG - chr6_4:69756625-69756644 Msa0994660:intron 30.0%
GCAGAGTATATAAAAAAGAG+AGG - chr6_4:69756829-69756848 Msa0994660:intron 30.0%
GATAATATGCTTTCATGTCA+TGG + chr6_4:69756864-69756883 None:intergenic 30.0%
! TGACATGAAAGCATATTATC+AGG - chr6_4:69756864-69756883 Msa0994660:intron 30.0%
TATTCTATGAAGCACAGATA+CGG - chr6_4:69757026-69757045 Msa0994660:intron 30.0%
GTTCTTGAAAACTCTACAAA+TGG - chr6_4:69757479-69757498 Msa0994660:intron 30.0%
TAGGAAAATTGGTAAACTCT+CGG - chr6_4:69757688-69757707 Msa0994660:intron 30.0%
CAGCTAAAATGAAACAATGA+CGG + chr6_4:69757820-69757839 None:intergenic 30.0%
TGAAATTGTTGAAAGATGGA+AGG - chr6_4:69758014-69758033 Msa0994660:five_prime_UTR 30.0%
! GTTATGCTTCCTCTTTTATA+TGG - chr6_4:69758203-69758222 Msa0994660:five_prime_UTR 30.0%
GAGCTTTCCTAAAATGAAAC+GGG - chr6_4:69751255-69751274 Msa0994660:three_prime_UTR 35.0%
AGGTCTCTTTCATATGTTGA+TGG - chr6_4:69751377-69751396 Msa0994660:CDS 35.0%
CTTCTCCATTCTCTCATATA+TGG - chr6_4:69751500-69751519 Msa0994660:intron 35.0%
ACTAGCCATATATGAGAGAA+TGG + chr6_4:69751508-69751527 None:intergenic 35.0%
! TCTCTCATATATGGCTAGTT+TGG - chr6_4:69751509-69751528 Msa0994660:intron 35.0%
AGTTTGGAAGCAATGAAACA+AGG - chr6_4:69751525-69751544 Msa0994660:intron 35.0%
! AAAAGTACAACGTTGTTGGT+TGG - chr6_4:69751603-69751622 Msa0994660:intron 35.0%
GTGTTTGATACGGTAAGTAT+TGG - chr6_4:69752491-69752510 Msa0994660:intron 35.0%
AGAGATAAAGGGTTGTATTG+TGG - chr6_4:69752633-69752652 Msa0994660:CDS 35.0%
TATCTTTCTCCATCATCCAT+CGG - chr6_4:69752885-69752904 Msa0994660:CDS 35.0%
! AGATGCATTAGGGTGATTTT+AGG + chr6_4:69752938-69752957 None:intergenic 35.0%
GAAGAGAAAGAAGATGCATT+AGG + chr6_4:69752949-69752968 None:intergenic 35.0%
!! TTACCATTTTGTTTCGGTGT+TGG - chr6_4:69753087-69753106 Msa0994660:intron 35.0%
AAACCAACACCGAAACAAAA+TGG + chr6_4:69753093-69753112 None:intergenic 35.0%
!!! ATTTTGTTTCGGTGTTGGTT+TGG - chr6_4:69753092-69753111 Msa0994660:intron 35.0%
CCAAAGAGGATGAGAAATAA+TGG + chr6_4:69753401-69753420 None:intergenic 35.0%
! CCATTATTTCTCATCCTCTT+TGG - chr6_4:69753398-69753417 Msa0994660:intron 35.0%
!! CATTTTACTAATTTGGGGTG+TGG - chr6_4:69753432-69753451 Msa0994660:intron 35.0%
AGTGGGGACATTATTAAAGT+GGG + chr6_4:69753512-69753531 None:intergenic 35.0%
TAGTGGGGACATTATTAAAG+TGG + chr6_4:69753513-69753532 None:intergenic 35.0%
! TTTTGGTAAAGAGACGGTTA+TGG + chr6_4:69753819-69753838 None:intergenic 35.0%
CGTCTCTTTACCAAAAGAAA+AGG - chr6_4:69753823-69753842 Msa0994660:CDS 35.0%
! TAGTCAGCGTGAATGTATTT+TGG - chr6_4:69753963-69753982 Msa0994660:intron 35.0%
TCTCTATTACCAGCATATGA+AGG - chr6_4:69754018-69754037 Msa0994660:intron 35.0%
!! ACTGATTTTCCTTCATATGC+TGG + chr6_4:69754030-69754049 None:intergenic 35.0%
!!! GGAAAATCAGTTTTAGAGCT+TGG - chr6_4:69754039-69754058 Msa0994660:intron 35.0%
TGGAAGATTTACAGCTGAAT+TGG - chr6_4:69754071-69754090 Msa0994660:intron 35.0%
! CATTGAGAGTGCAATAAAGA+AGG - chr6_4:69754128-69754147 Msa0994660:intron 35.0%
TTCTCTAATATATGCCCTTG+GGG + chr6_4:69754206-69754225 None:intergenic 35.0%
CACATCTTCAATACGAAGTT+TGG + chr6_4:69754375-69754394 None:intergenic 35.0%
TGTCAGTGTGATTTCAATGT+TGG + chr6_4:69754406-69754425 None:intergenic 35.0%
ACATGAACTTGACATTCTTG+TGG + chr6_4:69754646-69754665 None:intergenic 35.0%
CCTTCAGAAATATGCAAGTT+TGG + chr6_4:69754686-69754705 None:intergenic 35.0%
! CCAAACTTGCATATTTCTGA+AGG - chr6_4:69754683-69754702 Msa0994660:CDS 35.0%
! CTTGCATATTTCTGAAGGAT+CGG - chr6_4:69754688-69754707 Msa0994660:CDS 35.0%
CATGTATCTTTCAGATGAAG+AGG - chr6_4:69754739-69754758 Msa0994660:CDS 35.0%
! CTATGAAGGCATAGAATATC+CGG - chr6_4:69754778-69754797 Msa0994660:CDS 35.0%
TTCTCTTTGAATCTCCAGAT+TGG + chr6_4:69755102-69755121 None:intergenic 35.0%
! GGAACCAAGATTTTACACTA+AGG - chr6_4:69755144-69755163 Msa0994660:intron 35.0%
AAAGCTTATGCATGGCAATT+TGG + chr6_4:69755500-69755519 None:intergenic 35.0%
!! TATCTTTCCCTTTTTCGTGT+AGG - chr6_4:69755561-69755580 Msa0994660:intron 35.0%
TCTTTGTCATGCAGATTTGT+TGG - chr6_4:69755793-69755812 Msa0994660:intron 35.0%
!! TCATGCAGATTTGTTGGATA+TGG - chr6_4:69755799-69755818 Msa0994660:intron 35.0%
AAGATGATAGAGGGTTTCAA+CGG - chr6_4:69755838-69755857 Msa0994660:intron 35.0%
! AAACCATCGATGATAACGAT+TGG - chr6_4:69756052-69756071 Msa0994660:intron 35.0%
TATCCAATCGTTATCATCGA+TGG + chr6_4:69756058-69756077 None:intergenic 35.0%
TATCCAACAACCGTTATTGA+TGG - chr6_4:69756113-69756132 Msa0994660:intron 35.0%
CACTAGTGAACCATCAATAA+CGG + chr6_4:69756126-69756145 None:intergenic 35.0%
ATTCTTGAGCAGAAACAACA+AGG - chr6_4:69756349-69756368 Msa0994660:intron 35.0%
TTCTTGAGCAGAAACAACAA+GGG - chr6_4:69756350-69756369 Msa0994660:intron 35.0%
AGAAACAACAAGGGAAATTG+TGG - chr6_4:69756359-69756378 Msa0994660:intron 35.0%
!! ACATCTAGTACTTTTTGACC+TGG + chr6_4:69756402-69756421 None:intergenic 35.0%
!! GGTCAAAAAGTACTAGATGT+TGG - chr6_4:69756402-69756421 Msa0994660:intron 35.0%
! AAAGTACTAGATGTTGGTTG+TGG - chr6_4:69756408-69756427 Msa0994660:intron 35.0%
!! GGCTGAAAATTTTGATGTTG+AGG - chr6_4:69756455-69756474 Msa0994660:intron 35.0%
GAGAAATCATGTTTATGGAG+AGG + chr6_4:69756494-69756513 None:intergenic 35.0%
! TTTTATAAGTGGTTGAAGCC+TGG - chr6_4:69756748-69756767 Msa0994660:intron 35.0%
! GTAATTAAAAGTGTACCTCC+AGG + chr6_4:69756769-69756788 None:intergenic 35.0%
! ACTGACTATTGCAAAAGTGT+TGG - chr6_4:69756787-69756806 Msa0994660:intron 35.0%
! TCAAATTATTAGTGGTGTCG+AGG + chr6_4:69757085-69757104 None:intergenic 35.0%
TGCTGTTGATCAAACCAATT+TGG - chr6_4:69757375-69757394 Msa0994660:intron 35.0%
GAGTGTGTTACAAACCAAAT+TGG + chr6_4:69757392-69757411 None:intergenic 35.0%
ATCAACCTTCTTGTTCTCAA+GGG + chr6_4:69757514-69757533 None:intergenic 35.0%
AATCAACCTTCTTGTTCTCA+AGG + chr6_4:69757515-69757534 None:intergenic 35.0%
! TGACGGAGAAAGTATATGTG+TGG - chr6_4:69751228-69751247 Msa0994660:three_prime_UTR 40.0%
! GACGGAGAAAGTATATGTGT+GGG - chr6_4:69751229-69751248 Msa0994660:three_prime_UTR 40.0%
CAAGGGCTATAGCTTATAGA+AGG - chr6_4:69751425-69751444 Msa0994660:intron 40.0%
GTGAAGTGCAAAGAAGTTAC+TGG - chr6_4:69751762-69751781 Msa0994660:intron 40.0%
TCTCTCTTCTTTGTCGAGAT+GGG + chr6_4:69751843-69751862 None:intergenic 40.0%
AATTGGAAGCCCATTTAGAC+TGG + chr6_4:69752417-69752436 None:intergenic 40.0%
AGCGTAACTTTGATTCTACG+AGG - chr6_4:69752758-69752777 Msa0994660:intron 40.0%
GCGTAACTTTGATTCTACGA+GGG - chr6_4:69752759-69752778 Msa0994660:intron 40.0%
AACTTTGATTCTACGAGGGT+TGG - chr6_4:69752763-69752782 Msa0994660:intron 40.0%
GTGGGGACATTATTAAAGTG+GGG + chr6_4:69753511-69753530 None:intergenic 40.0%
AAATGTTATCATGTGCCCCA+AGG - chr6_4:69754188-69754207 Msa0994660:intron 40.0%
AATGTTATCATGTGCCCCAA+GGG - chr6_4:69754189-69754208 Msa0994660:intron 40.0%
!! ATTCTTTAACTTGTGCCCCA+AGG - chr6_4:69754312-69754331 Msa0994660:CDS 40.0%
!! TTCTTTAACTTGTGCCCCAA+GGG - chr6_4:69754313-69754332 Msa0994660:CDS 40.0%
! TCTTGTTATCTTGTGCCCTT+GGG + chr6_4:69754331-69754350 None:intergenic 40.0%
AGGCATAGAATATCCGGATT+TGG - chr6_4:69754784-69754803 Msa0994660:CDS 40.0%
GATTCAATGTGCTCACTATG+TGG - chr6_4:69754891-69754910 Msa0994660:intron 40.0%
TAGCTGAAAGGATGGTCAAA+TGG - chr6_4:69755032-69755051 Msa0994660:intron 40.0%
! GAATCTTGTTTCCACCAATC+TGG - chr6_4:69755085-69755104 Msa0994660:intron 40.0%
TCTTTGAATCTCCAGATTGG+TGG + chr6_4:69755099-69755118 None:intergenic 40.0%
TCACCTCAATCATAATCGTC+CGG + chr6_4:69755396-69755415 None:intergenic 40.0%
TCCTTTGAGCTTTCTCTTGT+GGG - chr6_4:69755622-69755641 Msa0994660:intron 40.0%
TAGATTTGCAAAAGTGGACG+TGG - chr6_4:69756020-69756039 Msa0994660:intron 40.0%
GAACCATCAATAACGGTTGT+TGG + chr6_4:69756119-69756138 None:intergenic 40.0%
! CGTTATTGATGGTTCACTAG+TGG - chr6_4:69756124-69756143 Msa0994660:intron 40.0%
AGGGAAATTGTGGCAAAGTT+AGG - chr6_4:69756369-69756388 Msa0994660:intron 40.0%
! CTAGATGTTGGTTGTGGTAT+TGG - chr6_4:69756414-69756433 Msa0994660:intron 40.0%
TACTGCATATTTGAGTCCGA+TGG + chr6_4:69756532-69756551 None:intergenic 40.0%
AAATGCCCTTGAGAACAAGA+AGG - chr6_4:69757506-69757525 Msa0994660:intron 40.0%
!! CTTTTAGAAGGGTATGAGCA+AGG + chr6_4:69758316-69758335 None:intergenic 40.0%
TTGAACAGGATCACCTCTTG+TGG + chr6_4:69751346-69751365 None:intergenic 45.0%
ACAAGAGGTGATCCTGTTCA+AGG - chr6_4:69751345-69751364 Msa0994660:CDS 45.0%
AGGTGATCCTGTTCAAGGAA+AGG - chr6_4:69751350-69751369 Msa0994660:CDS 45.0%
GGTGATCCTGTTCAAGGAAA+GGG - chr6_4:69751351-69751370 Msa0994660:CDS 45.0%
GTCTCTCTTCTTTGTCGAGA+TGG + chr6_4:69751844-69751863 None:intergenic 45.0%
AGAGACGGTTATGGACTTTG+AGG + chr6_4:69753810-69753829 None:intergenic 45.0%
!!! TCAGTTTTAGAGCTTGGAGC+AGG - chr6_4:69754045-69754064 Msa0994660:intron 45.0%
TTAGAGCTTGGAGCAGGTAT+TGG - chr6_4:69754051-69754070 Msa0994660:intron 45.0%
TGAAGTCCACAGCAAGCAAT+TGG + chr6_4:69754110-69754129 None:intergenic 45.0%
! CTTGTTATCTTGTGCCCTTG+GGG + chr6_4:69754330-69754349 None:intergenic 45.0%
! GTCTTGTTATCTTGTGCCCT+TGG + chr6_4:69754332-69754351 None:intergenic 45.0%
CTTGGTTCCCTATAGTGAGT+TGG + chr6_4:69755133-69755152 None:intergenic 45.0%
TGACCGGACGATTATGATTG+AGG - chr6_4:69755390-69755409 Msa0994660:CDS 45.0%
TGAGGTGACGATCATGTCAA+CGG - chr6_4:69755408-69755427 Msa0994660:intron 45.0%
CTCCTTTGAGCTTTCTCTTG+TGG - chr6_4:69755621-69755640 Msa0994660:intron 45.0%
TCCCACAAGAGAAAGCTCAA+AGG + chr6_4:69755626-69755645 None:intergenic 45.0%
CTTGTGGGATGCAAATGCAT+TGG - chr6_4:69755637-69755656 Msa0994660:intron 45.0%
GCAAAGTTAGGACTAAAGCC+AGG - chr6_4:69756381-69756400 Msa0994660:intron 45.0%
! GATGTTGGTTGTGGTATTGG+AGG - chr6_4:69756417-69756436 Msa0994660:intron 45.0%
! TGGAGGAGGTGACTTTTACA+TGG - chr6_4:69756434-69756453 Msa0994660:intron 45.0%
TATAAGTGGTTGAAGCCTGG+AGG - chr6_4:69756751-69756770 Msa0994660:intron 45.0%
!! TAAATGTGTCGGTGTCGTGT+CGG - chr6_4:69757129-69757148 Msa0994660:intron 45.0%
GTACAGACACTCCTCGAATT+AGG + chr6_4:69757190-69757209 None:intergenic 45.0%
TCACAGATGCTTGAGAATGC+TGG - chr6_4:69757337-69757356 Msa0994660:intron 45.0%
TGTAGCTGGTGAGCAGATAT+GGG - chr6_4:69758053-69758072 Msa0994660:five_prime_UTR 45.0%
!!! AAATTATAAATTTATTTTGA+CGG - chr6_4:69751211-69751230 Msa0994660:three_prime_UTR 5.0%
!!! TATAATTTTATATTTGAAAT+CGG - chr6_4:69754833-69754852 Msa0994660:intron 5.0%
!! ATTAAAAATAATAATACAAA+TGG + chr6_4:69756282-69756301 None:intergenic 5.0%
GATCCTGTTCAAGGAAAGGG+TGG - chr6_4:69751354-69751373 Msa0994660:CDS 50.0%
CTCTTCTTTGTCGAGATGGG+AGG + chr6_4:69751840-69751859 None:intergenic 50.0%
TTCTCCATCATCCATCGGAG+AGG - chr6_4:69752890-69752909 Msa0994660:CDS 50.0%
TCTCCATCATCCATCGGAGA+GGG - chr6_4:69752891-69752910 Msa0994660:CDS 50.0%
ATGTAGATCGGTCGCCAAAG+AGG + chr6_4:69753415-69753434 None:intergenic 50.0%
! GCTGAATTGGCTCAGAAAGC+TGG - chr6_4:69754084-69754103 Msa0994660:intron 50.0%
GAGGTGACGATCATGTCAAC+GGG - chr6_4:69755409-69755428 Msa0994660:intron 50.0%
TTTGTGAGCACAGGAGGACT+TGG - chr6_4:69755927-69755946 Msa0994660:intron 50.0%
CAAAAGTGGACGTGGTTCTC+TGG - chr6_4:69756028-69756047 Msa0994660:intron 50.0%
! GTTGGTTGTGGTATTGGAGG+AGG - chr6_4:69756420-69756439 Msa0994660:intron 50.0%
CTAGCTATCGAACGTGCCAT+CGG - chr6_4:69756513-69756532 Msa0994660:intron 50.0%
TACGACACGTGTTCGACACT+TGG - chr6_4:69757159-69757178 Msa0994660:intron 50.0%
ACTTGGACACGCCTAATTCG+AGG - chr6_4:69757176-69757195 Msa0994660:intron 50.0%
TGGAAGGCTAAGCAGATGAG+AGG - chr6_4:69758030-69758049 Msa0994660:five_prime_UTR 50.0%
! AAGCAGATGAGAGGTGTAGC+TGG - chr6_4:69758039-69758058 Msa0994660:five_prime_UTR 50.0%
GTGTAGCTGGTGAGCAGATA+TGG - chr6_4:69758052-69758071 Msa0994660:five_prime_UTR 50.0%
GTAGCTGGTGAGCAGATATG+GGG - chr6_4:69758054-69758073 Msa0994660:five_prime_UTR 50.0%
CCTCCACCCTTTCCTTGAAC+AGG + chr6_4:69751360-69751379 None:intergenic 55.0%
CCTGTTCAAGGAAAGGGTGG+AGG - chr6_4:69751357-69751376 Msa0994660:CDS 55.0%
CATCCCTCTCCGATGGATGA+TGG + chr6_4:69752897-69752916 None:intergenic 55.0%
CATCATCCATCGGAGAGGGA+TGG - chr6_4:69752895-69752914 Msa0994660:CDS 55.0%
CCAAAACCATCCCTCTCCGA+TGG + chr6_4:69752904-69752923 None:intergenic 55.0%
! CCATCGGAGAGGGATGGTTT+TGG - chr6_4:69752901-69752920 Msa0994660:CDS 55.0%
! AGCTGGCCAATTGCTTGCTG+TGG - chr6_4:69754101-69754120 Msa0994660:intron 55.0%
! GGTCAAGGCTTTGTGAGCAC+AGG - chr6_4:69755918-69755937 Msa0994660:intron 55.0%
! CAAGGCTTTGTGAGCACAGG+AGG - chr6_4:69755921-69755940 Msa0994660:intron 55.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG - chr6_4:69757135-69757154 Msa0994660:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 69751082 69758349 69751082 ID=Msa0994660;Name=Msa0994660
chr6_4 mRNA 69751082 69758349 69751082 ID=Msa0994660-mRNA-1;Parent=Msa0994660;Name=Msa0994660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=437|0.90|0.91|1|0.90|0.91|12|248|487
chr6_4 exon 69751082 69751428 69751082 ID=Msa0994660-mRNA-1:exon:12908;Parent=Msa0994660-mRNA-1
chr6_4 exon 69751877 69751951 69751877 ID=Msa0994660-mRNA-1:exon:12907;Parent=Msa0994660-mRNA-1
chr6_4 exon 69752035 69752088 69752035 ID=Msa0994660-mRNA-1:exon:12906;Parent=Msa0994660-mRNA-1
chr6_4 exon 69752546 69752707 69752546 ID=Msa0994660-mRNA-1:exon:12905;Parent=Msa0994660-mRNA-1
chr6_4 exon 69752790 69753070 69752790 ID=Msa0994660-mRNA-1:exon:12904;Parent=Msa0994660-mRNA-1
chr6_4 exon 69753483 69753624 69753483 ID=Msa0994660-mRNA-1:exon:12903;Parent=Msa0994660-mRNA-1
chr6_4 exon 69753738 69753848 69753738 ID=Msa0994660-mRNA-1:exon:12902;Parent=Msa0994660-mRNA-1
chr6_4 exon 69754266 69754409 69754266 ID=Msa0994660-mRNA-1:exon:12901;Parent=Msa0994660-mRNA-1
chr6_4 exon 69754671 69754808 69754671 ID=Msa0994660-mRNA-1:exon:12900;Parent=Msa0994660-mRNA-1
chr6_4 exon 69755312 69755419 69755312 ID=Msa0994660-mRNA-1:exon:12899;Parent=Msa0994660-mRNA-1
chr6_4 exon 69757563 69757684 69757563 ID=Msa0994660-mRNA-1:exon:12898;Parent=Msa0994660-mRNA-1
chr6_4 exon 69757885 69758349 69757885 ID=Msa0994660-mRNA-1:exon:12897;Parent=Msa0994660-mRNA-1
chr6_4 five_prime_UTR 69757913 69758349 69757913 ID=Msa0994660-mRNA-1:five_prime_utr;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69757885 69757912 69757885 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69757563 69757684 69757563 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69755312 69755419 69755312 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69754671 69754808 69754671 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69754266 69754409 69754266 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69753738 69753848 69753738 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69753483 69753624 69753483 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69752790 69753070 69752790 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69752546 69752707 69752546 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69752035 69752088 69752035 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69751877 69751951 69751877 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 CDS 69751330 69751428 69751330 ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4 three_prime_UTR 69751082 69751329 69751082 ID=Msa0994660-mRNA-1:three_prime_utr;Parent=Msa0994660-mRNA-1
Gene Sequence

>Msa0994660

ATGGCTAGTTTGGAAGCAATGAAACAAGGTGGTGAAGATGAACGTGAAGTGCAAAGAAGTTACTGGAAAGAGCATTGTGTAAATTTGTCAGTTGAGTCAATGATGCTCGATTCAAACGCCTCCCATCTCGACAAAGAAGAGAGACCCGAAGTACTTTCTCTATTACCAGCATATGAAGGAAAATCAGTTTTAGAGCTTGGAGCAGGTATTGGAAGATTTACAGCTGAATTGGCTCAGAAAGCTGGCCAATTGCTTGCTAATGAAAATACTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACATCTCCAAACTTGCATATTTCTGAAGGATCGGTTGATTTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATGAAGAGGTTAAAAATTTAGCTGAAAGGATGGTCAAATGGTTAAATGTTGATGGATGTATATTCTTTAGAGAATCTTGTTTCCACCAATCTGGAGATTCAAAGAGAAAATACAATCCAACTCACTATAGGGAACCAAGATTTTACACTAAGGTATTTAAAGAGTGTCATATGAGTGATGATAATGGGAACTCCTTTGAGCTTTCTCTTGTGGGATGCAAATGCATTGGAGCTTATGTTAGAAATAAGAAGAATCAAAATCAGATTTGTTGGATATGGCAAAAAGTTAAATCACAAGATGATAGAGGGTTTCAACGGTTCTTAGATAGTGTTGAGTATAACCATAAGGATATATTACTCTATGAACATGTTTATGGTCAAGGCTTTGTGAGCACAGGAGGACTTGAAACAACAAGGGAAATTGTGGCAAAGTTAGGACTAAAGCCAGGTCAAAAAGTACTAGATGTTGGTTGTGGTATTGGAGGAGGTGACTTTTACATGGCTGAAAATTTTGATGTTGAGGTTGTTGCTATTGACCTCTCCATAAACATGATTTCTCTAGCTATCGAACGTGCCATCGGACTCAAATATGCAGTAGAATTTGAATGTGTTGATTGCACGAAAAAAACGTATCCTGAGAAAACATTCGATGTAATCTACACTCGCGACACCTTATTACACATCAAAGATAAACCAACATTGTTCAGATCATTTTATAAGTGGTTGAAGCCTGGAGGTACACTTTTAATTACTGACTATTGCAAAAGTGTTGGAAGTCTTTCAGTAGAATATGCAGAGTATATAAAAAAGAGAGGATATTATATCCATGACATGAAAGCATATTATCAGATGCTTGAGAATGCTGGATTTGATGATGTTATTGCTGTTGATCAAACCAATTTGTTCTTGAAAACTCTACAAATGGAGTTAAATGCCCTTGAGAACAAGAAGGTTGATTTCATTGATGATTTCTCTAAGGATGACTATAATGAAATTGTTGAAAGATGGAAGGCTAAGCAGATGAGAGGTGTAGCTGGTGAGCAGATATGGGGATTGTTCATTGCCAAGAAAAAATGA

Protein sequence

>Msa0994660

MASLEAMKQGGEDEREVQRSYWKEHCVNLSVESMMLDSNASHLDKEERPEVLSLLPAYEGKSVLELGAGIGRFTAELAQKAGQLLANENTNGHHKNVKFMCADVTSPNLHISEGSVDLIFSNWLLMYLSDEEVKNLAERMVKWLNVDGCIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHMSDDNGNSFELSLVGCKCIGAYVRNKKNQNQICWIWQKVKSQDDRGFQRFLDSVEYNHKDILLYEHVYGQGFVSTGGLETTREIVAKLGLKPGQKVLDVGCGIGGGDFYMAENFDVEVVAIDLSINMISLAIERAIGLKYAVEFECVDCTKKTYPEKTFDVIYTRDTLLHIKDKPTLFRSFYKWLKPGGTLLITDYCKSVGSLSVEYAEYIKKRGYYIHDMKAYYQMLENAGFDDVIAVDQTNLFLKTLQMELNALENKKVDFIDDFSKDDYNEIVERWKAKQMRGVAGEQIWGLFIAKKK*