AlfalfaGEDB | Msa0994660

M. sativa cultivar zhongmu-4 / Msa0994660

KEGG: K05929
GO: GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576
PFAM: PF08241.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994660	XP_003619836.1	95.976	497	10	1	1	487	1	497	0.0	991

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994660	sp\|Q9M571\|PEAMT_SPIOL	71.400	493	131	1	4	486	1	493	0.0	742

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994660	G7KPT7	95.976	497	10	1	1	487	1	497	0.0	991

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0125810	Msa0994660	0.809761	1.612676e-50	-8.615850e-47
Msa0137120	Msa0994660	-0.801013	1.099966e-48	-8.615850e-47
Msa0220060	Msa0994660	0.805219	1.483565e-49	-8.615850e-47
Msa0227800	Msa0994660	0.836799	7.570034e-57	-8.615850e-47
Msa0272420	Msa0994660	0.801690	7.994677e-49	-8.615850e-47
Msa0304990	Msa0994660	0.832685	8.207804e-56	-8.615850e-47
Msa0319090	Msa0994660	0.816122	6.505932e-52	-8.615850e-47
Msa0365360	Msa0994660	0.829573	4.773348e-55	-8.615850e-47
Msa0371610	Msa0994660	0.821820	3.294637e-53	-8.615850e-47
Msa0413040	Msa0994660	0.804693	1.911224e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994660	MtrunA17_Chr6g0478481	95.976	497	10	1	1	487	1	497	0.0	991
Msa0994660	MtrunA17_Chr8g0393121	78.024	496	96	3	1	486	1	493	0.0	777
Msa0994660	MtrunA17_Chr1g0150551	33.019	106	69	1	280	383	130	235	1.04e-12	69.3
Msa0994660	MtrunA17_Chr3g0089671	31.034	116	78	1	270	383	86	201	9.67e-12	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994660	AT1G73600.1	70.041	484	135	1	13	486	6	489	0.0	729
Msa0994660	AT1G73600.2	70.041	484	135	1	13	486	20	503	0.0	728
Msa0994660	AT3G18000.1	69.796	490	138	1	7	486	1	490	0.0	726
Msa0994660	AT1G48600.2	69.959	486	136	1	12	487	6	491	0.0	719
Msa0994660	AT1G48600.1	70.464	474	130	1	24	487	2	475	0.0	703
Msa0994660	AT5G13710.1	29.697	165	103	4	249	401	55	218	4.46e-13	70.9
Msa0994660	AT5G13710.2	29.697	165	103	4	249	401	55	218	4.46e-13	70.9
Msa0994660	AT1G64970.1	29.808	104	71	1	282	383	130	233	3.00e-11	65.5

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Find 105 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTACTAGATGTTGGTTG+TGG	0.613287	6_4:-69753001	Msa0994660:CDS
AAATAAGAAGAATCAAAATC+AGG	0.476569	6_4:-69753737	Msa0994660:intron
AAATGCCCTTGAGAACAAGA+AGG	0.581850	6_4:-69751903	Msa0994660:CDS
AAGATGATAGAGGGTTTCAA+CGG	0.629674	6_4:-69753571	Msa0994660:CDS
AAGCAGATGAGAGGTGTAGC+TGG	0.525626	6_4:-69751370	Msa0994660:CDS
AATACAATCCAACTCACTAT+AGG	0.347505	6_4:-69754287	Msa0994660:CDS
AATCAACCTTCTTGTTCTCA+AGG	0.512925	6_4:+69751897	None:intergenic
ACAAGAGGTGATCCTGTTCA+AGG	0.507817	6_4:-69758064	Msa0994660:five_prime_UTR
ACATGAACTTGACATTCTTG+TGG	0.645945	6_4:+69754766	None:intergenic
ACTAGCCATATATGAGAGAA+TGG	0.502014	6_4:+69757904	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGCTTTCCTAAAATGAAA+CGG	-	chr6_4:69751254-69751273	Msa0994660:three_prime_UTR	30.0%
AAATTAGTAGCACATACTTC+GGG	+	chr6_4:69751866-69751885	None:intergenic	30.0%
GAAATTAGTAGCACATACTT+CGG	+	chr6_4:69751867-69751886	None:intergenic	30.0%
TCAGTTAGTTGTATAGGATT+AGG	+	chr6_4:69751895-69751914	None:intergenic	30.0%
GAATAGTCAGTTAGTTGTAT+AGG	+	chr6_4:69751901-69751920	None:intergenic	30.0%
CCGTTAAAACACGATAAAAT+TGG	+	chr6_4:69752434-69752453	None:intergenic	30.0%
TTGTCTTGTATTACAATTGG+TGG	-	chr6_4:69752578-69752597	Msa0994660:CDS	30.0%
GGTTGTATTGTGGTTTATTA+AGG	-	chr6_4:69752643-69752662	Msa0994660:CDS	30.0%
AGAAAGATAACTTAGAGAGA+AGG	+	chr6_4:69752874-69752893	None:intergenic	30.0%
AAGAGAAAGAAGATGCATTA+GGG	+	chr6_4:69752948-69752967	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	69751082	69758349	69751082	ID=Msa0994660;Name=Msa0994660
chr6_4	mRNA	69751082	69758349	69751082	ID=Msa0994660-mRNA-1;Parent=Msa0994660;Name=Msa0994660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=437\|0.90\|0.91\|1\|0.90\|0.91\|12\|248\|487
chr6_4	exon	69751082	69751428	69751082	ID=Msa0994660-mRNA-1:exon:12908;Parent=Msa0994660-mRNA-1
chr6_4	exon	69751877	69751951	69751877	ID=Msa0994660-mRNA-1:exon:12907;Parent=Msa0994660-mRNA-1
chr6_4	exon	69752035	69752088	69752035	ID=Msa0994660-mRNA-1:exon:12906;Parent=Msa0994660-mRNA-1
chr6_4	exon	69752546	69752707	69752546	ID=Msa0994660-mRNA-1:exon:12905;Parent=Msa0994660-mRNA-1
chr6_4	exon	69752790	69753070	69752790	ID=Msa0994660-mRNA-1:exon:12904;Parent=Msa0994660-mRNA-1
chr6_4	exon	69753483	69753624	69753483	ID=Msa0994660-mRNA-1:exon:12903;Parent=Msa0994660-mRNA-1
chr6_4	exon	69753738	69753848	69753738	ID=Msa0994660-mRNA-1:exon:12902;Parent=Msa0994660-mRNA-1
chr6_4	exon	69754266	69754409	69754266	ID=Msa0994660-mRNA-1:exon:12901;Parent=Msa0994660-mRNA-1
chr6_4	exon	69754671	69754808	69754671	ID=Msa0994660-mRNA-1:exon:12900;Parent=Msa0994660-mRNA-1
chr6_4	exon	69755312	69755419	69755312	ID=Msa0994660-mRNA-1:exon:12899;Parent=Msa0994660-mRNA-1
chr6_4	exon	69757563	69757684	69757563	ID=Msa0994660-mRNA-1:exon:12898;Parent=Msa0994660-mRNA-1
chr6_4	exon	69757885	69758349	69757885	ID=Msa0994660-mRNA-1:exon:12897;Parent=Msa0994660-mRNA-1
chr6_4	five_prime_UTR	69757913	69758349	69757913	ID=Msa0994660-mRNA-1:five_prime_utr;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69757885	69757912	69757885	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69757563	69757684	69757563	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69755312	69755419	69755312	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69754671	69754808	69754671	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69754266	69754409	69754266	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69753738	69753848	69753738	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69753483	69753624	69753483	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69752790	69753070	69752790	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69752546	69752707	69752546	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69752035	69752088	69752035	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69751877	69751951	69751877	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	CDS	69751330	69751428	69751330	ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1
chr6_4	three_prime_UTR	69751082	69751329	69751082	ID=Msa0994660-mRNA-1:three_prime_utr;Parent=Msa0994660-mRNA-1

Gene Sequence

>Msa0994660

ATGGCTAGTTTGGAAGCAATGAAACAAGGTGGTGAAGATGAACGTGAAGTGCAAAGAAGTTACTGGAAAGAGCATTGTGTAAATTTGTCAGTTGAGTCAATGATGCTCGATTCAAACGCCTCCCATCTCGACAAAGAAGAGAGACCCGAAGTACTTTCTCTATTACCAGCATATGAAGGAAAATCAGTTTTAGAGCTTGGAGCAGGTATTGGAAGATTTACAGCTGAATTGGCTCAGAAAGCTGGCCAATTGCTTGCTAATGAAAATACTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACATCTCCAAACTTGCATATTTCTGAAGGATCGGTTGATTTGATATTCTCAAATTGGTTACTCATGTATCTTTCAGATGAAGAGGTTAAAAATTTAGCTGAAAGGATGGTCAAATGGTTAAATGTTGATGGATGTATATTCTTTAGAGAATCTTGTTTCCACCAATCTGGAGATTCAAAGAGAAAATACAATCCAACTCACTATAGGGAACCAAGATTTTACACTAAGGTATTTAAAGAGTGTCATATGAGTGATGATAATGGGAACTCCTTTGAGCTTTCTCTTGTGGGATGCAAATGCATTGGAGCTTATGTTAGAAATAAGAAGAATCAAAATCAGATTTGTTGGATATGGCAAAAAGTTAAATCACAAGATGATAGAGGGTTTCAACGGTTCTTAGATAGTGTTGAGTATAACCATAAGGATATATTACTCTATGAACATGTTTATGGTCAAGGCTTTGTGAGCACAGGAGGACTTGAAACAACAAGGGAAATTGTGGCAAAGTTAGGACTAAAGCCAGGTCAAAAAGTACTAGATGTTGGTTGTGGTATTGGAGGAGGTGACTTTTACATGGCTGAAAATTTTGATGTTGAGGTTGTTGCTATTGACCTCTCCATAAACATGATTTCTCTAGCTATCGAACGTGCCATCGGACTCAAATATGCAGTAGAATTTGAATGTGTTGATTGCACGAAAAAAACGTATCCTGAGAAAACATTCGATGTAATCTACACTCGCGACACCTTATTACACATCAAAGATAAACCAACATTGTTCAGATCATTTTATAAGTGGTTGAAGCCTGGAGGTACACTTTTAATTACTGACTATTGCAAAAGTGTTGGAAGTCTTTCAGTAGAATATGCAGAGTATATAAAAAAGAGAGGATATTATATCCATGACATGAAAGCATATTATCAGATGCTTGAGAATGCTGGATTTGATGATGTTATTGCTGTTGATCAAACCAATTTGTTCTTGAAAACTCTACAAATGGAGTTAAATGCCCTTGAGAACAAGAAGGTTGATTTCATTGATGATTTCTCTAAGGATGACTATAATGAAATTGTTGAAAGATGGAAGGCTAAGCAGATGAGAGGTGTAGCTGGTGAGCAGATATGGGGATTGTTCATTGCCAAGAAAAAATGA

Protein sequence

>Msa0994660

MASLEAMKQGGEDEREVQRSYWKEHCVNLSVESMMLDSNASHLDKEERPEVLSLLPAYEGKSVLELGAGIGRFTAELAQKAGQLLANENTNGHHKNVKFMCADVTSPNLHISEGSVDLIFSNWLLMYLSDEEVKNLAERMVKWLNVDGCIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHMSDDNGNSFELSLVGCKCIGAYVRNKKNQNQICWIWQKVKSQDDRGFQRFLDSVEYNHKDILLYEHVYGQGFVSTGGLETTREIVAKLGLKPGQKVLDVGCGIGGGDFYMAENFDVEVVAIDLSINMISLAIERAIGLKYAVEFECVDCTKKTYPEKTFDVIYTRDTLLHIKDKPTLFRSFYKWLKPGGTLLITDYCKSVGSLSVEYAEYIKKRGYYIHDMKAYYQMLENAGFDDVIAVDQTNLFLKTLQMELNALENKKVDFIDDFSKDDYNEIVERWKAKQMRGVAGEQIWGLFIAKKK*