Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994660 | XP_003619836.1 | 95.976 | 497 | 10 | 1 | 1 | 487 | 1 | 497 | 0.0 | 991 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994660 | sp|Q9M571|PEAMT_SPIOL | 71.400 | 493 | 131 | 1 | 4 | 486 | 1 | 493 | 0.0 | 742 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994660 | G7KPT7 | 95.976 | 497 | 10 | 1 | 1 | 487 | 1 | 497 | 0.0 | 991 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0623170 | Msa0994660 | 0.832171 | 1.100629e-55 | -8.615850e-47 |
Msa0734340 | Msa0994660 | 0.820151 | 7.980615e-53 | -8.615850e-47 |
Msa0747500 | Msa0994660 | -0.803449 | 3.467893e-49 | -8.615850e-47 |
Msa0756480 | Msa0994660 | 0.809543 | 1.796625e-50 | -8.615850e-47 |
Msa0815380 | Msa0994660 | 0.812691 | 3.733043e-51 | -8.615850e-47 |
Msa0835510 | Msa0994660 | 0.821978 | 3.029064e-53 | -8.615850e-47 |
Msa0842050 | Msa0994660 | 0.814711 | 1.340446e-51 | -8.615850e-47 |
Msa0125810 | Msa0994660 | 0.809761 | 1.612676e-50 | -8.615850e-47 |
Msa0137120 | Msa0994660 | -0.801013 | 1.099966e-48 | -8.615850e-47 |
Msa0220060 | Msa0994660 | 0.805219 | 1.483565e-49 | -8.615850e-47 |
Msa0227800 | Msa0994660 | 0.836799 | 7.570034e-57 | -8.615850e-47 |
Msa0365360 | Msa0994660 | 0.829573 | 4.773348e-55 | -8.615850e-47 |
Msa0371610 | Msa0994660 | 0.821820 | 3.294637e-53 | -8.615850e-47 |
Msa0413040 | Msa0994660 | 0.804693 | 1.911224e-49 | -8.615850e-47 |
Msa0434890 | Msa0994660 | -0.803037 | 4.219563e-49 | -8.615850e-47 |
Msa0452010 | Msa0994660 | 0.808713 | 2.705420e-50 | -8.615850e-47 |
Msa0452680 | Msa0994660 | 0.839314 | 1.706315e-57 | -8.615850e-47 |
Msa0457370 | Msa0994660 | 0.806555 | 7.770190e-50 | -8.615850e-47 |
Msa0994660 | Msa1009020 | 0.807857 | 4.117577e-50 | -8.615850e-47 |
Msa0994660 | Msa1064420 | 0.824212 | 9.120338e-54 | -8.615850e-47 |
Msa0994660 | Msa1081600 | 0.801253 | 9.825144e-49 | -8.615850e-47 |
Msa0994660 | Msa1083410 | 0.804900 | 1.730360e-49 | -8.615850e-47 |
Msa0994660 | Msa1125040 | 0.843057 | 1.771021e-58 | -8.615850e-47 |
Msa0994660 | Msa1166370 | 0.814229 | 1.713801e-51 | -8.615850e-47 |
Msa0994660 | Msa1167400 | 0.817488 | 3.213103e-52 | -8.615850e-47 |
Msa0994660 | Msa1238480 | 0.810264 | 1.256940e-50 | -8.615850e-47 |
Msa0994660 | Msa1272070 | 0.804470 | 2.127378e-49 | -8.615850e-47 |
Msa0994660 | Msa1303570 | 0.805926 | 1.054240e-49 | -8.615850e-47 |
Msa0994660 | Msa1337190 | 0.800835 | 1.196165e-48 | -8.615850e-47 |
Msa0994660 | Msa1373950 | 0.809015 | 2.331796e-50 | -8.615850e-47 |
Msa0994660 | Msa1386020 | 0.800470 | 1.419491e-48 | -8.615850e-47 |
Msa0994660 | Msa1399500 | 0.830153 | 3.447120e-55 | -8.615850e-47 |
Msa0994660 | Msa1409750 | 0.831042 | 2.089086e-55 | -8.615850e-47 |
Msa0994660 | Msa1423080 | 0.830550 | 2.756613e-55 | -8.615850e-47 |
Msa0994660 | Msa1447160 | -0.803503 | 3.380140e-49 | -8.615850e-47 |
Msa0272420 | Msa0994660 | 0.801690 | 7.994677e-49 | -8.615850e-47 |
Msa0304990 | Msa0994660 | 0.832685 | 8.207804e-56 | -8.615850e-47 |
Msa0319090 | Msa0994660 | 0.816122 | 6.505932e-52 | -8.615850e-47 |
Msa0504630 | Msa0994660 | 0.820752 | 5.810990e-53 | -8.615850e-47 |
Msa0853820 | Msa0994660 | 0.801976 | 6.981988e-49 | -8.615850e-47 |
Msa0855520 | Msa0994660 | 0.815077 | 1.111798e-51 | -8.615850e-47 |
Msa0880080 | Msa0994660 | 0.834865 | 2.340802e-56 | -8.615850e-47 |
Msa0921630 | Msa0994660 | 0.907497 | 4.755991e-81 | -8.615850e-47 |
Msa0940840 | Msa0994660 | 0.803000 | 4.294612e-49 | -8.615850e-47 |
Msa0960270 | Msa0994660 | 0.904655 | 9.783841e-80 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994660 | MtrunA17_Chr6g0478481 | 95.976 | 497 | 10 | 1 | 1 | 487 | 1 | 497 | 0.0 | 991 |
Msa0994660 | MtrunA17_Chr8g0393121 | 78.024 | 496 | 96 | 3 | 1 | 486 | 1 | 493 | 0.0 | 777 |
Msa0994660 | MtrunA17_Chr1g0150551 | 33.019 | 106 | 69 | 1 | 280 | 383 | 130 | 235 | 1.04e-12 | 69.3 |
Msa0994660 | MtrunA17_Chr3g0089671 | 31.034 | 116 | 78 | 1 | 270 | 383 | 86 | 201 | 9.67e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0994660 | AT1G73600.1 | 70.041 | 484 | 135 | 1 | 13 | 486 | 6 | 489 | 0.0 | 729 |
Msa0994660 | AT1G73600.2 | 70.041 | 484 | 135 | 1 | 13 | 486 | 20 | 503 | 0.0 | 728 |
Msa0994660 | AT3G18000.1 | 69.796 | 490 | 138 | 1 | 7 | 486 | 1 | 490 | 0.0 | 726 |
Msa0994660 | AT1G48600.2 | 69.959 | 486 | 136 | 1 | 12 | 487 | 6 | 491 | 0.0 | 719 |
Msa0994660 | AT1G48600.1 | 70.464 | 474 | 130 | 1 | 24 | 487 | 2 | 475 | 0.0 | 703 |
Msa0994660 | AT5G13710.1 | 29.697 | 165 | 103 | 4 | 249 | 401 | 55 | 218 | 4.46e-13 | 70.9 |
Msa0994660 | AT5G13710.2 | 29.697 | 165 | 103 | 4 | 249 | 401 | 55 | 218 | 4.46e-13 | 70.9 |
Msa0994660 | AT1G64970.1 | 29.808 | 104 | 71 | 1 | 282 | 383 | 130 | 233 | 3.00e-11 | 65.5 |
Find 105 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACTCTATGAACATGTTTA+TGG | 0.190932 | 6_4:-69753512 | Msa0994660:CDS |
CCTTACTTTGATGTGTAATA+AGG | 0.192732 | 6_4:+69752784 | None:intergenic |
TTTACCTATTACTCTTATTA+TGG | 0.214729 | 6_4:-69751169 | Msa0994660:three_prime_UTR |
TGCTGTTGATCAAACCAATT+TGG | 0.240782 | 6_4:-69752034 | Msa0994660:intron |
TTGATTTGATATTCTCAAAT+TGG | 0.248443 | 6_4:-69754698 | Msa0994660:CDS |
AGCTAGAGAAATCATGTTTA+TGG | 0.260404 | 6_4:+69752913 | None:intergenic |
CTTCTCCATTCTCTCATATA+TGG | 0.261877 | 6_4:-69757909 | Msa0994660:exon |
TCTCTCATATATGGCTAGTT+TGG | 0.281400 | 6_4:-69757900 | Msa0994660:exon |
TCCTTTGAGCTTTCTCTTGT+GGG | 0.294619 | 6_4:-69753787 | Msa0994660:CDS |
GTGTAGCTGGTGAGCAGATA+TGG | 0.296797 | 6_4:-69751357 | Msa0994660:CDS |
CTAGATGTTGGTTGTGGTAT+TGG | 0.308873 | 6_4:-69752995 | Msa0994660:CDS |
GAAACCATAATAAGAGTAAT+AGG | 0.323222 | 6_4:+69751165 | None:intergenic |
TGGAAGATTTACAGCTGAAT+TGG | 0.333381 | 6_4:-69755338 | Msa0994660:CDS |
TTTCATTGATGATTTCTCTA+AGG | 0.333888 | 6_4:-69751876 | Msa0994660:intron |
TCATGCAGATTTGTTGGATA+TGG | 0.335290 | 6_4:-69753610 | Msa0994660:intron |
TTGCAGAATGAAAATACTAA+TGG | 0.336708 | 6_4:-69754792 | Msa0994660:intron |
CCTTCAGAAATATGCAAGTT+TGG | 0.346855 | 6_4:+69754726 | None:intergenic |
AATACAATCCAACTCACTAT+AGG | 0.347505 | 6_4:-69754287 | Msa0994660:CDS |
GAGTGTGTTACAAACCAAAT+TGG | 0.356467 | 6_4:+69752020 | None:intergenic |
GAATCTTGTTTCCACCAATC+TGG | 0.358429 | 6_4:-69754324 | Msa0994660:CDS |
TCTTTGTCATGCAGATTTGT+TGG | 0.362351 | 6_4:-69753616 | Msa0994660:intron |
GTTAAATCACAAGATGATAG+AGG | 0.369519 | 6_4:-69753581 | Msa0994660:CDS |
GTCTCTCTTCTTTGTCGAGA+TGG | 0.371915 | 6_4:+69757568 | None:intergenic |
CTCCTTTGAGCTTTCTCTTG+TGG | 0.372126 | 6_4:-69753788 | Msa0994660:CDS |
GAGTTAATATATATACTCTT+TGG | 0.372616 | 6_4:-69758329 | Msa0994660:five_prime_UTR |
ATACAATCCAACTCACTATA+GGG | 0.384922 | 6_4:-69754286 | Msa0994660:CDS |
AGGGAAATTGTGGCAAAGTT+AGG | 0.389582 | 6_4:-69753040 | Msa0994660:CDS |
TTAGAGCTTGGAGCAGGTAT+TGG | 0.405980 | 6_4:-69755358 | Msa0994660:CDS |
AGGTCTCTTTCATATGTTGA+TGG | 0.407825 | 6_4:-69758032 | Msa0994660:five_prime_UTR |
CAAACCTTAGTGTAAAATCT+TGG | 0.408255 | 6_4:+69754261 | None:intergenic |
CATAGAGTAATATATCCTTA+TGG | 0.408848 | 6_4:+69753525 | None:intergenic |
CCTCCACCCTTTCCTTGAAC+AGG | 0.410237 | 6_4:+69758052 | None:intergenic |
GTCAAATGGTTAAATGTTGA+TGG | 0.412539 | 6_4:-69754363 | Msa0994660:CDS |
TGACATGAAAGCATATTATC+AGG | 0.414876 | 6_4:-69752545 | Msa0994660:intron |
GTGAAGTGCAAAGAAGTTAC+TGG | 0.416072 | 6_4:-69757647 | Msa0994660:CDS |
TCTCTCTTCTTTGTCGAGAT+GGG | 0.418673 | 6_4:+69757569 | None:intergenic |
TCACAGATGCTTGAGAATGC+TGG | 0.438992 | 6_4:-69752072 | Msa0994660:intron |
TTCTCTTTGAATCTCCAGAT+TGG | 0.440419 | 6_4:+69754310 | None:intergenic |
GTTCTTGAAAACTCTACAAA+TGG | 0.442389 | 6_4:-69751930 | Msa0994660:CDS |
CAAGGGCTATAGCTTATAGA+AGG | 0.452900 | 6_4:-69757984 | Msa0994660:five_prime_UTR |
TGTCATATGAGTGATGATAA+TGG | 0.457058 | 6_4:-69753814 | Msa0994660:CDS |
TTTGTGAGCACAGGAGGACT+TGG | 0.457900 | 6_4:-69753482 | Msa0994660:intron |
TGTAGCTGGTGAGCAGATAT+GGG | 0.458742 | 6_4:-69751356 | Msa0994660:CDS |
TGAAGTCCACAGCAAGCAAT+TGG | 0.460367 | 6_4:+69755302 | None:intergenic |
TAGCTGAAAGGATGGTCAAA+TGG | 0.462289 | 6_4:-69754377 | Msa0994660:CDS |
TAAAATGATCTGAACAATGT+TGG | 0.463358 | 6_4:+69752679 | None:intergenic |
GTCATATGAGTGATGATAAT+GGG | 0.464751 | 6_4:-69753813 | Msa0994660:CDS |
ATAATGAAATTGTTGAAAGA+TGG | 0.474872 | 6_4:-69751399 | Msa0994660:CDS |
TCTTTGAATCTCCAGATTGG+TGG | 0.475051 | 6_4:+69754313 | None:intergenic |
AAATAAGAAGAATCAAAATC+AGG | 0.476569 | 6_4:-69753737 | Msa0994660:intron |
CTTGCATATTTCTGAAGGAT+CGG | 0.493828 | 6_4:-69754721 | Msa0994660:CDS |
GCTGAATTGGCTCAGAAAGC+TGG | 0.494705 | 6_4:-69755325 | Msa0994660:CDS |
GAGCTTTCCTAAAATGAAAC+GGG | 0.498984 | 6_4:-69758154 | Msa0994660:five_prime_UTR |
TGAGCTTTCCTAAAATGAAA+CGG | 0.500395 | 6_4:-69758155 | Msa0994660:five_prime_UTR |
CTTGGTTCCCTATAGTGAGT+TGG | 0.500725 | 6_4:+69754279 | None:intergenic |
TATGAACATGTTTATGGTCA+AGG | 0.501805 | 6_4:-69753506 | Msa0994660:CDS |
ACTAGCCATATATGAGAGAA+TGG | 0.502014 | 6_4:+69757904 | None:intergenic |
CATTTACTTCCATATAAAAG+AGG | 0.504157 | 6_4:+69751197 | None:intergenic |
ACAAGAGGTGATCCTGTTCA+AGG | 0.507817 | 6_4:-69758064 | Msa0994660:five_prime_UTR |
TCTCTATTACCAGCATATGA+AGG | 0.509429 | 6_4:-69755391 | Msa0994660:CDS |
GATAATATGCTTTCATGTCA+TGG | 0.509905 | 6_4:+69752548 | None:intergenic |
AATCAACCTTCTTGTTCTCA+AGG | 0.512925 | 6_4:+69751897 | None:intergenic |
ACTGACTATTGCAAAAGTGT+TGG | 0.520445 | 6_4:-69752622 | Msa0994660:CDS |
TTGAACAGGATCACCTCTTG+TGG | 0.523966 | 6_4:+69758066 | None:intergenic |
CTAGCTATCGAACGTGCCAT+CGG | 0.524887 | 6_4:-69752896 | Msa0994660:CDS |
AAGCAGATGAGAGGTGTAGC+TGG | 0.525626 | 6_4:-69751370 | Msa0994660:CDS |
CATGTATCTTTCAGATGAAG+AGG | 0.527858 | 6_4:-69754670 | Msa0994660:intron |
CCAAACTTGCATATTTCTGA+AGG | 0.528360 | 6_4:-69754726 | Msa0994660:CDS |
GTTATATATAAGAAATTACA+AGG | 0.529056 | 6_4:-69758002 | Msa0994660:five_prime_UTR |
GGTGATCCTGTTCAAGGAAA+GGG | 0.529788 | 6_4:-69758058 | Msa0994660:five_prime_UTR |
GGTCAAGGCTTTGTGAGCAC+AGG | 0.534562 | 6_4:-69753491 | Msa0994660:CDS |
TAGTGTTGAGTATAACCATA+AGG | 0.541790 | 6_4:-69753540 | Msa0994660:CDS |
GTAATTAAAAGTGTACCTCC+AGG | 0.542732 | 6_4:+69752643 | None:intergenic |
CAACACAATTATTAATGGAA+AGG | 0.543112 | 6_4:+69751248 | None:intergenic |
CTCTTCTTTGTCGAGATGGG+AGG | 0.545903 | 6_4:+69757572 | None:intergenic |
GTTGGTTGTGGTATTGGAGG+AGG | 0.549538 | 6_4:-69752989 | Msa0994660:CDS |
CTTGTGGGATGCAAATGCAT+TGG | 0.550546 | 6_4:-69753772 | Msa0994660:CDS |
CAAGGCTTTGTGAGCACAGG+AGG | 0.555847 | 6_4:-69753488 | Msa0994660:CDS |
GATGTTGGTTGTGGTATTGG+AGG | 0.557635 | 6_4:-69752992 | Msa0994660:CDS |
TACTGCATATTTGAGTCCGA+TGG | 0.562209 | 6_4:+69752880 | None:intergenic |
AGGTGATCCTGTTCAAGGAA+AGG | 0.562810 | 6_4:-69758059 | Msa0994660:five_prime_UTR |
ATCAACCTTCTTGTTCTCAA+GGG | 0.563447 | 6_4:+69751898 | None:intergenic |
TTAAATCACAAGATGATAGA+GGG | 0.564358 | 6_4:-69753580 | Msa0994660:CDS |
AGAAACAACAAGGGAAATTG+TGG | 0.570096 | 6_4:-69753050 | Msa0994660:CDS |
TCATTCAATAATAATATATG+TGG | 0.570572 | 6_4:-69758273 | Msa0994660:five_prime_UTR |
ATTCTTGAGCAGAAACAACA+AGG | 0.575658 | 6_4:-69753060 | Msa0994660:intron |
AGAAATGAAAGAGTACTCAA+TGG | 0.578756 | 6_4:+69757947 | None:intergenic |
TGAAATTGTTGAAAGATGGA+AGG | 0.578969 | 6_4:-69751395 | Msa0994660:CDS |
AAATGCCCTTGAGAACAAGA+AGG | 0.581850 | 6_4:-69751903 | Msa0994660:CDS |
CCTGTTCAAGGAAAGGGTGG+AGG | 0.587703 | 6_4:-69758052 | Msa0994660:five_prime_UTR |
AAAGTACTAGATGTTGGTTG+TGG | 0.613287 | 6_4:-69753001 | Msa0994660:CDS |
GAGAAATCATGTTTATGGAG+AGG | 0.618544 | 6_4:+69752918 | None:intergenic |
TGACGGAGAAAGTATATGTG+TGG | 0.628755 | 6_4:-69758181 | Msa0994660:five_prime_UTR |
AAGATGATAGAGGGTTTCAA+CGG | 0.629674 | 6_4:-69753571 | Msa0994660:CDS |
GATCCTGTTCAAGGAAAGGG+TGG | 0.633868 | 6_4:-69758055 | Msa0994660:five_prime_UTR |
TGGAAGGCTAAGCAGATGAG+AGG | 0.635467 | 6_4:-69751379 | Msa0994660:CDS |
TTCTTGAGCAGAAACAACAA+GGG | 0.645125 | 6_4:-69753059 | Msa0994660:intron |
ACATGAACTTGACATTCTTG+TGG | 0.645945 | 6_4:+69754766 | None:intergenic |
AGTTTGGAAGCAATGAAACA+AGG | 0.646586 | 6_4:-69757884 | Msa0994660:intron |
GCAAAGTTAGGACTAAAGCC+AGG | 0.647033 | 6_4:-69753028 | Msa0994660:CDS |
TCCCACAAGAGAAAGCTCAA+AGG | 0.650134 | 6_4:+69753786 | None:intergenic |
GACGGAGAAAGTATATGTGT+GGG | 0.661351 | 6_4:-69758180 | Msa0994660:five_prime_UTR |
TATAAGTGGTTGAAGCCTGG+AGG | 0.668799 | 6_4:-69752658 | Msa0994660:CDS |
GTAGCTGGTGAGCAGATATG+GGG | 0.669642 | 6_4:-69751355 | Msa0994660:CDS |
TTATATATAAGAAATTACAA+GGG | 0.746498 | 6_4:-69758001 | Msa0994660:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATAATAAATAATTAAT+AGG | + | chr6_4:69753908-69753927 | None:intergenic | 0.0% |
!! | TTATATATAAGAAATTACAA+GGG | - | chr6_4:69751408-69751427 | Msa0994660:CDS | 10.0% |
!!! | AAAAAAAGTATATTTTTTGA+AGG | + | chr6_4:69751986-69752005 | None:intergenic | 10.0% |
!!! | TAACAAGTTAATTTTTTTAA+GGG | + | chr6_4:69752130-69752149 | None:intergenic | 10.0% |
!!! | TTAACAAGTTAATTTTTTTA+AGG | + | chr6_4:69752131-69752150 | None:intergenic | 10.0% |
!! | TTGATATAGTATATTAAAAT+AGG | + | chr6_4:69753324-69753343 | None:intergenic | 10.0% |
!! | TAAAAAAAAATAAATAGAAG+TGG | + | chr6_4:69753732-69753751 | None:intergenic | 10.0% |
!! | AAATAAGTTAAAAATATGAT+TGG | + | chr6_4:69753776-69753795 | None:intergenic | 10.0% |
!!! | CAAAAAAGATTTTTTTTTTT+TGG | + | chr6_4:69756672-69756691 | None:intergenic | 10.0% |
!! | TTAATAAATGTTCTATATAT+AGG | - | chr6_4:69756702-69756721 | Msa0994660:intron | 10.0% |
!! | AATTTGATATGTAATAATTT+AGG | - | chr6_4:69756965-69756984 | Msa0994660:intron | 10.0% |
!! | ATTTGATATGTAATAATTTA+GGG | - | chr6_4:69756966-69756985 | Msa0994660:intron | 10.0% |
!!! | TATTTTTTGTTATAAACTTT+AGG | - | chr6_4:69757669-69757688 | Msa0994660:intron | 10.0% |
!! | TCATTCAATAATAATATATG+TGG | - | chr6_4:69751136-69751155 | Msa0994660:three_prime_UTR | 15.0% |
!! | GTTATATATAAGAAATTACA+AGG | - | chr6_4:69751407-69751426 | Msa0994660:CDS | 15.0% |
!! | TATATATCATACATAGATTA+AGG | - | chr6_4:69751676-69751695 | Msa0994660:intron | 15.0% |
!!! | ATAATTGTAATGATTTTTTC+AGG | - | chr6_4:69751725-69751744 | Msa0994660:intron | 15.0% |
!! | TTTAATAAATTGTAGTTACT+TGG | - | chr6_4:69752216-69752235 | Msa0994660:intron | 15.0% |
!! | CCTAAATATACATTTAAATT+GGG | + | chr6_4:69752469-69752488 | None:intergenic | 15.0% |
!! | CCAATTTAAATGTATATTTA+GGG | - | chr6_4:69752467-69752486 | Msa0994660:intron | 15.0% |
!!! | TCTTTTATGTTGTTAATTAT+AGG | - | chr6_4:69753470-69753489 | Msa0994660:intron | 15.0% |
!! | TACTAACTAAATTATGTTTA+CGG | - | chr6_4:69753679-69753698 | Msa0994660:intron | 15.0% |
!!! | TTAACATGTTATTTTCTAAT+TGG | - | chr6_4:69753873-69753892 | Msa0994660:intron | 15.0% |
!!! | ATCTATTTTAAATTACACAT+AGG | - | chr6_4:69753990-69754009 | Msa0994660:intron | 15.0% |
!! | GGTATTTATCAAAATAAAAT+TGG | - | chr6_4:69754544-69754563 | Msa0994660:intron | 15.0% |
!! | TATGTAAGAATTCTAATAAA+TGG | + | chr6_4:69756095-69756114 | None:intergenic | 15.0% |
!! | ATATAATTACATTAACAACA+AGG | + | chr6_4:69756897-69756916 | None:intergenic | 15.0% |
!!! | TCTTTTCTTTTTAACATATA+TGG | - | chr6_4:69756918-69756937 | Msa0994660:intron | 15.0% |
!!! | TGATTTTTTCAAATTATTAG+TGG | + | chr6_4:69757093-69757112 | None:intergenic | 15.0% |
!!! | AAAAATATGATTTTCAAGTA+AGG | + | chr6_4:69757229-69757248 | None:intergenic | 15.0% |
!! | TACTATAAAACAAAGTAATA+AGG | + | chr6_4:69757414-69757433 | None:intergenic | 15.0% |
!!! | TTTTTGAAATCTTCATTTTT+AGG | - | chr6_4:69757981-69758000 | Msa0994660:five_prime_UTR | 15.0% |
!! | AAAAACAACACAATTATTAA+TGG | + | chr6_4:69758169-69758188 | None:intergenic | 15.0% |
!! | TAAAGTTTGATTGATACATA+TGG | - | chr6_4:69752032-69752051 | Msa0994660:intron | 20.0% |
!! | AAAGTTTGATTGATACATAT+GGG | - | chr6_4:69752033-69752052 | Msa0994660:intron | 20.0% |
!!! | TACTTGGTGTTAATTATATT+TGG | - | chr6_4:69752232-69752251 | Msa0994660:intron | 20.0% |
!! | CAATATGAATCCAATATTTA+TGG | - | chr6_4:69752327-69752346 | Msa0994660:intron | 20.0% |
!!! | TTTAAATTGGGTTTTTTAGT+AGG | + | chr6_4:69752457-69752476 | None:intergenic | 20.0% |
!! | CCCAATTTAAATGTATATTT+AGG | - | chr6_4:69752466-69752485 | Msa0994660:intron | 20.0% |
!! | CCCTAAATATACATTTAAAT+TGG | + | chr6_4:69752470-69752489 | None:intergenic | 20.0% |
!!! | TTTTTGTCTTGTATTACAAT+TGG | - | chr6_4:69752575-69752594 | Msa0994660:CDS | 20.0% |
!!! | CTAATATGTATTTTAAAGAG+AGG | - | chr6_4:69752841-69752860 | Msa0994660:CDS | 20.0% |
!!! | CTTCTTTTAATTTAACTAAG+TGG | - | chr6_4:69752965-69752984 | Msa0994660:CDS | 20.0% |
!! | AAGATAAAATTCGATATATG+TGG | + | chr6_4:69752994-69753013 | None:intergenic | 20.0% |
!!! | TTTGATTTACCATTTTGTTT+CGG | - | chr6_4:69753081-69753100 | Msa0994660:intron | 20.0% |
!! | TCGTTGTATATTATTAACTT+TGG | - | chr6_4:69753241-69753260 | Msa0994660:intron | 20.0% |
!! | CAAATTAGTAAAATGTAGAT+CGG | + | chr6_4:69753427-69753446 | None:intergenic | 20.0% |
!!! | GATCTACATTTTACTAATTT+GGG | - | chr6_4:69753426-69753445 | Msa0994660:intron | 20.0% |
!!! | ATCTACATTTTACTAATTTG+GGG | - | chr6_4:69753427-69753446 | Msa0994660:intron | 20.0% |
!! | ACAACATAAAAGAAAATTGT+GGG | + | chr6_4:69753463-69753482 | None:intergenic | 20.0% |
!! | AACAACATAAAAGAAAATTG+TGG | + | chr6_4:69753464-69753483 | None:intergenic | 20.0% |
!!! | TTGAATTTTATGAAGTAGTT+TGG | - | chr6_4:69753597-69753616 | Msa0994660:CDS | 20.0% |
!! | ACTAACTAAATTATGTTTAC+GGG | - | chr6_4:69753680-69753699 | Msa0994660:intron | 20.0% |
!! | AACATTTGCCTATATTTATA+GGG | + | chr6_4:69754175-69754194 | None:intergenic | 20.0% |
!! | TAACATTTGCCTATATTTAT+AGG | + | chr6_4:69754176-69754195 | None:intergenic | 20.0% |
!!! | TCAACTTTTGTTCTTTTTTA+TGG | - | chr6_4:69754272-69754291 | Msa0994660:CDS | 20.0% |
!! | AAACAATAACATGTCTAATA+GGG | + | chr6_4:69754467-69754486 | None:intergenic | 20.0% |
!! | AAAATATCGTATGATATTCA+GGG | + | chr6_4:69754598-69754617 | None:intergenic | 20.0% |
!! | AAAAATATCGTATGATATTC+AGG | + | chr6_4:69754599-69754618 | None:intergenic | 20.0% |
!!! | TTGATTTGATATTCTCAAAT+TGG | - | chr6_4:69754711-69754730 | Msa0994660:CDS | 20.0% |
!!! | AGTTTTTTGTTTTTCTATGA+AGG | - | chr6_4:69754764-69754783 | Msa0994660:CDS | 20.0% |
!! | TAATTAGACACATACATTAA+GGG | + | chr6_4:69754961-69754980 | None:intergenic | 20.0% |
!!! | TTTTTTCCTTGATTAATTTC+AGG | - | chr6_4:69755000-69755019 | Msa0994660:intron | 20.0% |
!!! | TTTTAACCTGAAATTAATCA+AGG | + | chr6_4:69755009-69755028 | None:intergenic | 20.0% |
!! | TATAATCAAACAATTGTTGT+TGG | + | chr6_4:69755204-69755223 | None:intergenic | 20.0% |
!! | AAATAAGAAGAATCAAAATC+AGG | - | chr6_4:69755672-69755691 | Msa0994660:intron | 20.0% |
!! | AAAGGAATTATATATCATTG+AGG | + | chr6_4:69755967-69755986 | None:intergenic | 20.0% |
!! | ATATATAATTCCTTTCCTTT+AGG | - | chr6_4:69755972-69755991 | Msa0994660:intron | 20.0% |
!!! | ATTTAAAACAATGTTCCTAA+AGG | + | chr6_4:69755990-69756009 | None:intergenic | 20.0% |
!! | TTCAATGTAATTAAATGTGT+CGG | - | chr6_4:69757118-69757137 | Msa0994660:intron | 20.0% |
!!! | GTTATAAACTTTAGGAAAAT+TGG | - | chr6_4:69757677-69757696 | Msa0994660:intron | 20.0% |
!! | ATTATTAAAATCGAGAGTTT+AGG | + | chr6_4:69757763-69757782 | None:intergenic | 20.0% |
!! | TACATCAAAATTTAAGAGTT+TGG | + | chr6_4:69757927-69757946 | None:intergenic | 20.0% |
!! | ATAATGAAATTGTTGAAAGA+TGG | - | chr6_4:69758010-69758029 | Msa0994660:five_prime_UTR | 20.0% |
!!! | AAAGAAACATCATTTTTTCT+TGG | + | chr6_4:69758091-69758110 | None:intergenic | 20.0% |
!! | TTTACCTATTACTCTTATTA+TGG | - | chr6_4:69758240-69758259 | Msa0994660:five_prime_UTR | 20.0% |
!!! | TTATTTTTGTTTTCCACAAG+AGG | - | chr6_4:69751330-69751349 | Msa0994660:CDS | 25.0% |
!!! | ATTGTAATGATTTTTTCAGG+TGG | - | chr6_4:69751728-69751747 | Msa0994660:intron | 25.0% |
!!! | TGAATACGCACATTTTTTAA+TGG | + | chr6_4:69752160-69752179 | None:intergenic | 25.0% |
! | TTAAAAAATGTGCGTATTCA+AGG | - | chr6_4:69752160-69752179 | Msa0994660:intron | 25.0% |
!! | TGGTGTTAATTATATTTGGA+TGG | - | chr6_4:69752236-69752255 | Msa0994660:intron | 25.0% |
! | GAATCCAATATTTATGGATT+TGG | - | chr6_4:69752333-69752352 | Msa0994660:intron | 25.0% |
! | TGATCCAAATCCATAAATAT+TGG | + | chr6_4:69752340-69752359 | None:intergenic | 25.0% |
!!! | TTATTTTGAACCAGTCTAAA+TGG | - | chr6_4:69752404-69752423 | Msa0994660:intron | 25.0% |
!!! | TATTTTGAACCAGTCTAAAT+GGG | - | chr6_4:69752405-69752424 | Msa0994660:intron | 25.0% |
!!! | CCAATTTTATCGTGTTTTAA+CGG | - | chr6_4:69752431-69752450 | Msa0994660:intron | 25.0% |
! | ACAACTTGAATTAGAGATAA+AGG | - | chr6_4:69752621-69752640 | Msa0994660:CDS | 25.0% |
! | CAACTTGAATTAGAGATAAA+GGG | - | chr6_4:69752622-69752641 | Msa0994660:CDS | 25.0% |
!!! | GTAAGATTTTGAGTTTAAAC+TGG | - | chr6_4:69752667-69752686 | Msa0994660:CDS | 25.0% |
! | TGCATTTGATATGCTAAAAA+AGG | + | chr6_4:69752718-69752737 | None:intergenic | 25.0% |
! | AATAATATGATATGACACAC+TGG | + | chr6_4:69752790-69752809 | None:intergenic | 25.0% |
!! | CGATCTACATTTTACTAATT+TGG | - | chr6_4:69753425-69753444 | Msa0994660:intron | 25.0% |
! | AACATAAAAGAAAATTGTGG+GGG | + | chr6_4:69753461-69753480 | None:intergenic | 25.0% |
! | CAACATAAAAGAAAATTGTG+GGG | + | chr6_4:69753462-69753481 | None:intergenic | 25.0% |
!!! | ACTTTTTAGAGTGAATAAGT+GGG | - | chr6_4:69753632-69753651 | Msa0994660:intron | 25.0% |
!! | TATTTTCTAATTGGAGAACA+AGG | - | chr6_4:69753882-69753901 | Msa0994660:intron | 25.0% |
! | TTGATTACCCCTATAAATAT+AGG | - | chr6_4:69754164-69754183 | Msa0994660:intron | 25.0% |
! | ACATTTGCCTATATTTATAG+GGG | + | chr6_4:69754174-69754193 | None:intergenic | 25.0% |
!! | GGTGCTACATATATATTTAT+GGG | + | chr6_4:69754354-69754373 | None:intergenic | 25.0% |
!!! | TGGTGCTACATATATATTTA+TGG | + | chr6_4:69754355-69754374 | None:intergenic | 25.0% |
! | CAAACAATAACATGTCTAAT+AGG | + | chr6_4:69754468-69754487 | None:intergenic | 25.0% |
!!! | ATGAAGTATTGAATCAGATA+CGG | + | chr6_4:69754506-69754525 | None:intergenic | 25.0% |
! | CATAGCTACATATTTATGAT+TGG | - | chr6_4:69754523-69754542 | Msa0994660:intron | 25.0% |
! | TTGCAGAATGAAAATACTAA+TGG | - | chr6_4:69754617-69754636 | Msa0994660:intron | 25.0% |
! | ATTCTAAATTTGAGTCATCA+TGG | + | chr6_4:69754925-69754944 | None:intergenic | 25.0% |
! | GTAATTAGACACATACATTA+AGG | + | chr6_4:69754962-69754981 | None:intergenic | 25.0% |
! | TGTCTAATTACTTCTTGTTA+AGG | - | chr6_4:69754971-69754990 | Msa0994660:intron | 25.0% |
! | AGGTTAAAAATTTAGCTGAA+AGG | - | chr6_4:69755020-69755039 | Msa0994660:intron | 25.0% |
! | TAAAAATTTAGCTGAAAGGA+TGG | - | chr6_4:69755024-69755043 | Msa0994660:intron | 25.0% |
! | CAATTGTTTGATTATAGATG+AGG | - | chr6_4:69755208-69755227 | Msa0994660:intron | 25.0% |
! | GATATTATTGTGAACTTTGA+TGG | - | chr6_4:69755431-69755450 | Msa0994660:intron | 25.0% |
! | TAGAAAATAAAGCTTATGCA+TGG | + | chr6_4:69755508-69755527 | None:intergenic | 25.0% |
! | TTAAATACCTACACGAAAAA+GGG | + | chr6_4:69755571-69755590 | None:intergenic | 25.0% |
! | TTTAAATACCTACACGAAAA+AGG | + | chr6_4:69755572-69755591 | None:intergenic | 25.0% |
! | TTAAATCACAAGATGATAGA+GGG | - | chr6_4:69755829-69755848 | Msa0994660:intron | 25.0% |
! | CATAGAGTAATATATCCTTA+TGG | + | chr6_4:69755887-69755906 | None:intergenic | 25.0% |
! | TTACTCTATGAACATGTTTA+TGG | - | chr6_4:69755897-69755916 | Msa0994660:intron | 25.0% |
! | TAAAATGATCTGAACAATGT+TGG | + | chr6_4:69756733-69756752 | None:intergenic | 25.0% |
!! | TGTTCAGATCATTTTATAAG+TGG | - | chr6_4:69756737-69756756 | Msa0994660:intron | 25.0% |
! | ACAACACAAGGATAATAAAA+TGG | + | chr6_4:69757437-69757456 | None:intergenic | 25.0% |
! | AAAATTGTTAGAACAACACA+AGG | + | chr6_4:69757449-69757468 | None:intergenic | 25.0% |
!! | TTTCATTGATGATTTCTCTA+AGG | - | chr6_4:69757533-69757552 | Msa0994660:intron | 25.0% |
! | TTATGCAAGTTTACAATTGT+TGG | - | chr6_4:69757610-69757629 | Msa0994660:CDS | 25.0% |
!! | CTGTTTTCAAATATCTGTAT+AGG | - | chr6_4:69757837-69757856 | Msa0994660:intron | 25.0% |
! | CAACACAATTATTAATGGAA+AGG | + | chr6_4:69758164-69758183 | None:intergenic | 25.0% |
!!! | TAATTGTGTTGTTTTTAGCT+TGG | - | chr6_4:69758173-69758192 | Msa0994660:five_prime_UTR | 25.0% |
! | CATTTACTTCCATATAAAAG+AGG | + | chr6_4:69758215-69758234 | None:intergenic | 25.0% |
! | GAAACCATAATAAGAGTAAT+AGG | + | chr6_4:69758247-69758266 | None:intergenic | 25.0% |
!!! | AACTCTCTTTTCTTTTAGAA+GGG | + | chr6_4:69758327-69758346 | None:intergenic | 25.0% |
!! | AAACTCTCTTTTCTTTTAGA+AGG | + | chr6_4:69758328-69758347 | None:intergenic | 25.0% |
TGAGCTTTCCTAAAATGAAA+CGG | - | chr6_4:69751254-69751273 | Msa0994660:three_prime_UTR | 30.0% | |
! | TTAAGTACCCGTTTCATTTT+AGG | + | chr6_4:69751265-69751284 | None:intergenic | 30.0% |
!! | AGAAATGAAAGAGTACTCAA+TGG | + | chr6_4:69751465-69751484 | None:intergenic | 30.0% |
! | ATCAAAAAGTACAACGTTGT+TGG | - | chr6_4:69751599-69751618 | Msa0994660:intron | 30.0% |
AAATTAGTAGCACATACTTC+GGG | + | chr6_4:69751866-69751885 | None:intergenic | 30.0% | |
GAAATTAGTAGCACATACTT+CGG | + | chr6_4:69751867-69751886 | None:intergenic | 30.0% | |
TCAGTTAGTTGTATAGGATT+AGG | + | chr6_4:69751895-69751914 | None:intergenic | 30.0% | |
GAATAGTCAGTTAGTTGTAT+AGG | + | chr6_4:69751901-69751920 | None:intergenic | 30.0% | |
! | ATAGTTTTTCGTCATGAATG+TGG | + | chr6_4:69752082-69752101 | None:intergenic | 30.0% |
CCGTTAAAACACGATAAAAT+TGG | + | chr6_4:69752434-69752453 | None:intergenic | 30.0% | |
! | TATTTAGGGTGTGTTTGATA+CGG | - | chr6_4:69752481-69752500 | Msa0994660:intron | 30.0% |
TTGTCTTGTATTACAATTGG+TGG | - | chr6_4:69752578-69752597 | Msa0994660:CDS | 30.0% | |
GGTTGTATTGTGGTTTATTA+AGG | - | chr6_4:69752643-69752662 | Msa0994660:CDS | 30.0% | |
AGAAAGATAACTTAGAGAGA+AGG | + | chr6_4:69752874-69752893 | None:intergenic | 30.0% | |
AAGAGAAAGAAGATGCATTA+GGG | + | chr6_4:69752948-69752967 | None:intergenic | 30.0% | |
! | TTTGGTTTCTATTGAAAGAC+TGG | - | chr6_4:69753110-69753129 | Msa0994660:intron | 30.0% |
GACTAGAATATTCATGTCTT+TGG | + | chr6_4:69753187-69753206 | None:intergenic | 30.0% | |
!!! | CTTTTTAGTTTCATGTAGTG+GGG | + | chr6_4:69753528-69753547 | None:intergenic | 30.0% |
!!! | GCTTTTTAGTTTCATGTAGT+GGG | + | chr6_4:69753529-69753548 | None:intergenic | 30.0% |
!!! | AGCTTTTTAGTTTCATGTAG+TGG | + | chr6_4:69753530-69753549 | None:intergenic | 30.0% |
!!! | CACTTTTTAGAGTGAATAAG+TGG | - | chr6_4:69753631-69753650 | Msa0994660:intron | 30.0% |
! | CTTTTCTTTTGGTAAAGAGA+CGG | + | chr6_4:69753825-69753844 | None:intergenic | 30.0% |
! | CAATTATGAGCCTTTTCTTT+TGG | + | chr6_4:69753836-69753855 | None:intergenic | 30.0% |
ATTCTCTAATATATGCCCTT+GGG | + | chr6_4:69754207-69754226 | None:intergenic | 30.0% | |
AATTCTCTAATATATGCCCT+TGG | + | chr6_4:69754208-69754227 | None:intergenic | 30.0% | |
GACTTCATTTAATCCAAATC+CGG | + | chr6_4:69754800-69754819 | None:intergenic | 30.0% | |
CATACATTAAGGGACAAAAA+TGG | + | chr6_4:69754951-69754970 | None:intergenic | 30.0% | |
GTCAAATGGTTAAATGTTGA+TGG | - | chr6_4:69755046-69755065 | Msa0994660:intron | 30.0% | |
AATACAATCCAACTCACTAT+AGG | - | chr6_4:69755122-69755141 | Msa0994660:intron | 30.0% | |
ATACAATCCAACTCACTATA+GGG | - | chr6_4:69755123-69755142 | Msa0994660:intron | 30.0% | |
CAAACCTTAGTGTAAAATCT+TGG | + | chr6_4:69755151-69755170 | None:intergenic | 30.0% | |
!! | TCATCGACTTAATTTAGACT+CGG | - | chr6_4:69755234-69755253 | Msa0994660:intron | 30.0% |
AAGTCAAACATGTTAATGAC+CGG | - | chr6_4:69755374-69755393 | Msa0994660:CDS | 30.0% | |
GATGGTAAAGACATGTTATA+AGG | - | chr6_4:69755449-69755468 | Msa0994660:intron | 30.0% | |
AAAGACATGTTATAAGGACA+TGG | - | chr6_4:69755455-69755474 | Msa0994660:intron | 30.0% | |
TGTCATATGAGTGATGATAA+TGG | - | chr6_4:69755595-69755614 | Msa0994660:intron | 30.0% | |
GTCATATGAGTGATGATAAT+GGG | - | chr6_4:69755596-69755615 | Msa0994660:intron | 30.0% | |
GTTAAATCACAAGATGATAG+AGG | - | chr6_4:69755828-69755847 | Msa0994660:intron | 30.0% | |
! | TAGTGTTGAGTATAACCATA+AGG | - | chr6_4:69755869-69755888 | Msa0994660:intron | 30.0% |
TATGAACATGTTTATGGTCA+AGG | - | chr6_4:69755903-69755922 | Msa0994660:intron | 30.0% | |
AAACAATGTTCCTAAAGGAA+AGG | + | chr6_4:69755985-69756004 | None:intergenic | 30.0% | |
TTTAGCTAGATTTGCAAAAG+TGG | - | chr6_4:69756014-69756033 | Msa0994660:intron | 30.0% | |
! | CTCTAAATAGCACTTTTACT+CGG | - | chr6_4:69756157-69756176 | Msa0994660:intron | 30.0% |
GCAAATAATCGACATGAAAT+CGG | + | chr6_4:69756241-69756260 | None:intergenic | 30.0% | |
AGCTAGAGAAATCATGTTTA+TGG | + | chr6_4:69756499-69756518 | None:intergenic | 30.0% | |
! | ATTACATCGAATGTTTTCTC+AGG | + | chr6_4:69756591-69756610 | None:intergenic | 30.0% |
CCTTACTTTGATGTGTAATA+AGG | + | chr6_4:69756628-69756647 | None:intergenic | 30.0% | |
CCTTATTACACATCAAAGTA+AGG | - | chr6_4:69756625-69756644 | Msa0994660:intron | 30.0% | |
GCAGAGTATATAAAAAAGAG+AGG | - | chr6_4:69756829-69756848 | Msa0994660:intron | 30.0% | |
GATAATATGCTTTCATGTCA+TGG | + | chr6_4:69756864-69756883 | None:intergenic | 30.0% | |
! | TGACATGAAAGCATATTATC+AGG | - | chr6_4:69756864-69756883 | Msa0994660:intron | 30.0% |
TATTCTATGAAGCACAGATA+CGG | - | chr6_4:69757026-69757045 | Msa0994660:intron | 30.0% | |
GTTCTTGAAAACTCTACAAA+TGG | - | chr6_4:69757479-69757498 | Msa0994660:intron | 30.0% | |
TAGGAAAATTGGTAAACTCT+CGG | - | chr6_4:69757688-69757707 | Msa0994660:intron | 30.0% | |
CAGCTAAAATGAAACAATGA+CGG | + | chr6_4:69757820-69757839 | None:intergenic | 30.0% | |
TGAAATTGTTGAAAGATGGA+AGG | - | chr6_4:69758014-69758033 | Msa0994660:five_prime_UTR | 30.0% | |
! | GTTATGCTTCCTCTTTTATA+TGG | - | chr6_4:69758203-69758222 | Msa0994660:five_prime_UTR | 30.0% |
GAGCTTTCCTAAAATGAAAC+GGG | - | chr6_4:69751255-69751274 | Msa0994660:three_prime_UTR | 35.0% | |
AGGTCTCTTTCATATGTTGA+TGG | - | chr6_4:69751377-69751396 | Msa0994660:CDS | 35.0% | |
CTTCTCCATTCTCTCATATA+TGG | - | chr6_4:69751500-69751519 | Msa0994660:intron | 35.0% | |
ACTAGCCATATATGAGAGAA+TGG | + | chr6_4:69751508-69751527 | None:intergenic | 35.0% | |
! | TCTCTCATATATGGCTAGTT+TGG | - | chr6_4:69751509-69751528 | Msa0994660:intron | 35.0% |
AGTTTGGAAGCAATGAAACA+AGG | - | chr6_4:69751525-69751544 | Msa0994660:intron | 35.0% | |
! | AAAAGTACAACGTTGTTGGT+TGG | - | chr6_4:69751603-69751622 | Msa0994660:intron | 35.0% |
GTGTTTGATACGGTAAGTAT+TGG | - | chr6_4:69752491-69752510 | Msa0994660:intron | 35.0% | |
AGAGATAAAGGGTTGTATTG+TGG | - | chr6_4:69752633-69752652 | Msa0994660:CDS | 35.0% | |
TATCTTTCTCCATCATCCAT+CGG | - | chr6_4:69752885-69752904 | Msa0994660:CDS | 35.0% | |
! | AGATGCATTAGGGTGATTTT+AGG | + | chr6_4:69752938-69752957 | None:intergenic | 35.0% |
GAAGAGAAAGAAGATGCATT+AGG | + | chr6_4:69752949-69752968 | None:intergenic | 35.0% | |
!! | TTACCATTTTGTTTCGGTGT+TGG | - | chr6_4:69753087-69753106 | Msa0994660:intron | 35.0% |
AAACCAACACCGAAACAAAA+TGG | + | chr6_4:69753093-69753112 | None:intergenic | 35.0% | |
!!! | ATTTTGTTTCGGTGTTGGTT+TGG | - | chr6_4:69753092-69753111 | Msa0994660:intron | 35.0% |
CCAAAGAGGATGAGAAATAA+TGG | + | chr6_4:69753401-69753420 | None:intergenic | 35.0% | |
! | CCATTATTTCTCATCCTCTT+TGG | - | chr6_4:69753398-69753417 | Msa0994660:intron | 35.0% |
!! | CATTTTACTAATTTGGGGTG+TGG | - | chr6_4:69753432-69753451 | Msa0994660:intron | 35.0% |
AGTGGGGACATTATTAAAGT+GGG | + | chr6_4:69753512-69753531 | None:intergenic | 35.0% | |
TAGTGGGGACATTATTAAAG+TGG | + | chr6_4:69753513-69753532 | None:intergenic | 35.0% | |
! | TTTTGGTAAAGAGACGGTTA+TGG | + | chr6_4:69753819-69753838 | None:intergenic | 35.0% |
CGTCTCTTTACCAAAAGAAA+AGG | - | chr6_4:69753823-69753842 | Msa0994660:CDS | 35.0% | |
! | TAGTCAGCGTGAATGTATTT+TGG | - | chr6_4:69753963-69753982 | Msa0994660:intron | 35.0% |
TCTCTATTACCAGCATATGA+AGG | - | chr6_4:69754018-69754037 | Msa0994660:intron | 35.0% | |
!! | ACTGATTTTCCTTCATATGC+TGG | + | chr6_4:69754030-69754049 | None:intergenic | 35.0% |
!!! | GGAAAATCAGTTTTAGAGCT+TGG | - | chr6_4:69754039-69754058 | Msa0994660:intron | 35.0% |
TGGAAGATTTACAGCTGAAT+TGG | - | chr6_4:69754071-69754090 | Msa0994660:intron | 35.0% | |
! | CATTGAGAGTGCAATAAAGA+AGG | - | chr6_4:69754128-69754147 | Msa0994660:intron | 35.0% |
TTCTCTAATATATGCCCTTG+GGG | + | chr6_4:69754206-69754225 | None:intergenic | 35.0% | |
CACATCTTCAATACGAAGTT+TGG | + | chr6_4:69754375-69754394 | None:intergenic | 35.0% | |
TGTCAGTGTGATTTCAATGT+TGG | + | chr6_4:69754406-69754425 | None:intergenic | 35.0% | |
ACATGAACTTGACATTCTTG+TGG | + | chr6_4:69754646-69754665 | None:intergenic | 35.0% | |
CCTTCAGAAATATGCAAGTT+TGG | + | chr6_4:69754686-69754705 | None:intergenic | 35.0% | |
! | CCAAACTTGCATATTTCTGA+AGG | - | chr6_4:69754683-69754702 | Msa0994660:CDS | 35.0% |
! | CTTGCATATTTCTGAAGGAT+CGG | - | chr6_4:69754688-69754707 | Msa0994660:CDS | 35.0% |
CATGTATCTTTCAGATGAAG+AGG | - | chr6_4:69754739-69754758 | Msa0994660:CDS | 35.0% | |
! | CTATGAAGGCATAGAATATC+CGG | - | chr6_4:69754778-69754797 | Msa0994660:CDS | 35.0% |
TTCTCTTTGAATCTCCAGAT+TGG | + | chr6_4:69755102-69755121 | None:intergenic | 35.0% | |
! | GGAACCAAGATTTTACACTA+AGG | - | chr6_4:69755144-69755163 | Msa0994660:intron | 35.0% |
AAAGCTTATGCATGGCAATT+TGG | + | chr6_4:69755500-69755519 | None:intergenic | 35.0% | |
!! | TATCTTTCCCTTTTTCGTGT+AGG | - | chr6_4:69755561-69755580 | Msa0994660:intron | 35.0% |
TCTTTGTCATGCAGATTTGT+TGG | - | chr6_4:69755793-69755812 | Msa0994660:intron | 35.0% | |
!! | TCATGCAGATTTGTTGGATA+TGG | - | chr6_4:69755799-69755818 | Msa0994660:intron | 35.0% |
AAGATGATAGAGGGTTTCAA+CGG | - | chr6_4:69755838-69755857 | Msa0994660:intron | 35.0% | |
! | AAACCATCGATGATAACGAT+TGG | - | chr6_4:69756052-69756071 | Msa0994660:intron | 35.0% |
TATCCAATCGTTATCATCGA+TGG | + | chr6_4:69756058-69756077 | None:intergenic | 35.0% | |
TATCCAACAACCGTTATTGA+TGG | - | chr6_4:69756113-69756132 | Msa0994660:intron | 35.0% | |
CACTAGTGAACCATCAATAA+CGG | + | chr6_4:69756126-69756145 | None:intergenic | 35.0% | |
ATTCTTGAGCAGAAACAACA+AGG | - | chr6_4:69756349-69756368 | Msa0994660:intron | 35.0% | |
TTCTTGAGCAGAAACAACAA+GGG | - | chr6_4:69756350-69756369 | Msa0994660:intron | 35.0% | |
AGAAACAACAAGGGAAATTG+TGG | - | chr6_4:69756359-69756378 | Msa0994660:intron | 35.0% | |
!! | ACATCTAGTACTTTTTGACC+TGG | + | chr6_4:69756402-69756421 | None:intergenic | 35.0% |
!! | GGTCAAAAAGTACTAGATGT+TGG | - | chr6_4:69756402-69756421 | Msa0994660:intron | 35.0% |
! | AAAGTACTAGATGTTGGTTG+TGG | - | chr6_4:69756408-69756427 | Msa0994660:intron | 35.0% |
!! | GGCTGAAAATTTTGATGTTG+AGG | - | chr6_4:69756455-69756474 | Msa0994660:intron | 35.0% |
GAGAAATCATGTTTATGGAG+AGG | + | chr6_4:69756494-69756513 | None:intergenic | 35.0% | |
! | TTTTATAAGTGGTTGAAGCC+TGG | - | chr6_4:69756748-69756767 | Msa0994660:intron | 35.0% |
! | GTAATTAAAAGTGTACCTCC+AGG | + | chr6_4:69756769-69756788 | None:intergenic | 35.0% |
! | ACTGACTATTGCAAAAGTGT+TGG | - | chr6_4:69756787-69756806 | Msa0994660:intron | 35.0% |
! | TCAAATTATTAGTGGTGTCG+AGG | + | chr6_4:69757085-69757104 | None:intergenic | 35.0% |
TGCTGTTGATCAAACCAATT+TGG | - | chr6_4:69757375-69757394 | Msa0994660:intron | 35.0% | |
GAGTGTGTTACAAACCAAAT+TGG | + | chr6_4:69757392-69757411 | None:intergenic | 35.0% | |
ATCAACCTTCTTGTTCTCAA+GGG | + | chr6_4:69757514-69757533 | None:intergenic | 35.0% | |
AATCAACCTTCTTGTTCTCA+AGG | + | chr6_4:69757515-69757534 | None:intergenic | 35.0% | |
! | TGACGGAGAAAGTATATGTG+TGG | - | chr6_4:69751228-69751247 | Msa0994660:three_prime_UTR | 40.0% |
! | GACGGAGAAAGTATATGTGT+GGG | - | chr6_4:69751229-69751248 | Msa0994660:three_prime_UTR | 40.0% |
CAAGGGCTATAGCTTATAGA+AGG | - | chr6_4:69751425-69751444 | Msa0994660:intron | 40.0% | |
GTGAAGTGCAAAGAAGTTAC+TGG | - | chr6_4:69751762-69751781 | Msa0994660:intron | 40.0% | |
TCTCTCTTCTTTGTCGAGAT+GGG | + | chr6_4:69751843-69751862 | None:intergenic | 40.0% | |
AATTGGAAGCCCATTTAGAC+TGG | + | chr6_4:69752417-69752436 | None:intergenic | 40.0% | |
AGCGTAACTTTGATTCTACG+AGG | - | chr6_4:69752758-69752777 | Msa0994660:intron | 40.0% | |
GCGTAACTTTGATTCTACGA+GGG | - | chr6_4:69752759-69752778 | Msa0994660:intron | 40.0% | |
AACTTTGATTCTACGAGGGT+TGG | - | chr6_4:69752763-69752782 | Msa0994660:intron | 40.0% | |
GTGGGGACATTATTAAAGTG+GGG | + | chr6_4:69753511-69753530 | None:intergenic | 40.0% | |
AAATGTTATCATGTGCCCCA+AGG | - | chr6_4:69754188-69754207 | Msa0994660:intron | 40.0% | |
AATGTTATCATGTGCCCCAA+GGG | - | chr6_4:69754189-69754208 | Msa0994660:intron | 40.0% | |
!! | ATTCTTTAACTTGTGCCCCA+AGG | - | chr6_4:69754312-69754331 | Msa0994660:CDS | 40.0% |
!! | TTCTTTAACTTGTGCCCCAA+GGG | - | chr6_4:69754313-69754332 | Msa0994660:CDS | 40.0% |
! | TCTTGTTATCTTGTGCCCTT+GGG | + | chr6_4:69754331-69754350 | None:intergenic | 40.0% |
AGGCATAGAATATCCGGATT+TGG | - | chr6_4:69754784-69754803 | Msa0994660:CDS | 40.0% | |
GATTCAATGTGCTCACTATG+TGG | - | chr6_4:69754891-69754910 | Msa0994660:intron | 40.0% | |
TAGCTGAAAGGATGGTCAAA+TGG | - | chr6_4:69755032-69755051 | Msa0994660:intron | 40.0% | |
! | GAATCTTGTTTCCACCAATC+TGG | - | chr6_4:69755085-69755104 | Msa0994660:intron | 40.0% |
TCTTTGAATCTCCAGATTGG+TGG | + | chr6_4:69755099-69755118 | None:intergenic | 40.0% | |
TCACCTCAATCATAATCGTC+CGG | + | chr6_4:69755396-69755415 | None:intergenic | 40.0% | |
TCCTTTGAGCTTTCTCTTGT+GGG | - | chr6_4:69755622-69755641 | Msa0994660:intron | 40.0% | |
TAGATTTGCAAAAGTGGACG+TGG | - | chr6_4:69756020-69756039 | Msa0994660:intron | 40.0% | |
GAACCATCAATAACGGTTGT+TGG | + | chr6_4:69756119-69756138 | None:intergenic | 40.0% | |
! | CGTTATTGATGGTTCACTAG+TGG | - | chr6_4:69756124-69756143 | Msa0994660:intron | 40.0% |
AGGGAAATTGTGGCAAAGTT+AGG | - | chr6_4:69756369-69756388 | Msa0994660:intron | 40.0% | |
! | CTAGATGTTGGTTGTGGTAT+TGG | - | chr6_4:69756414-69756433 | Msa0994660:intron | 40.0% |
TACTGCATATTTGAGTCCGA+TGG | + | chr6_4:69756532-69756551 | None:intergenic | 40.0% | |
AAATGCCCTTGAGAACAAGA+AGG | - | chr6_4:69757506-69757525 | Msa0994660:intron | 40.0% | |
!! | CTTTTAGAAGGGTATGAGCA+AGG | + | chr6_4:69758316-69758335 | None:intergenic | 40.0% |
TTGAACAGGATCACCTCTTG+TGG | + | chr6_4:69751346-69751365 | None:intergenic | 45.0% | |
ACAAGAGGTGATCCTGTTCA+AGG | - | chr6_4:69751345-69751364 | Msa0994660:CDS | 45.0% | |
AGGTGATCCTGTTCAAGGAA+AGG | - | chr6_4:69751350-69751369 | Msa0994660:CDS | 45.0% | |
GGTGATCCTGTTCAAGGAAA+GGG | - | chr6_4:69751351-69751370 | Msa0994660:CDS | 45.0% | |
GTCTCTCTTCTTTGTCGAGA+TGG | + | chr6_4:69751844-69751863 | None:intergenic | 45.0% | |
AGAGACGGTTATGGACTTTG+AGG | + | chr6_4:69753810-69753829 | None:intergenic | 45.0% | |
!!! | TCAGTTTTAGAGCTTGGAGC+AGG | - | chr6_4:69754045-69754064 | Msa0994660:intron | 45.0% |
TTAGAGCTTGGAGCAGGTAT+TGG | - | chr6_4:69754051-69754070 | Msa0994660:intron | 45.0% | |
TGAAGTCCACAGCAAGCAAT+TGG | + | chr6_4:69754110-69754129 | None:intergenic | 45.0% | |
! | CTTGTTATCTTGTGCCCTTG+GGG | + | chr6_4:69754330-69754349 | None:intergenic | 45.0% |
! | GTCTTGTTATCTTGTGCCCT+TGG | + | chr6_4:69754332-69754351 | None:intergenic | 45.0% |
CTTGGTTCCCTATAGTGAGT+TGG | + | chr6_4:69755133-69755152 | None:intergenic | 45.0% | |
TGACCGGACGATTATGATTG+AGG | - | chr6_4:69755390-69755409 | Msa0994660:CDS | 45.0% | |
TGAGGTGACGATCATGTCAA+CGG | - | chr6_4:69755408-69755427 | Msa0994660:intron | 45.0% | |
CTCCTTTGAGCTTTCTCTTG+TGG | - | chr6_4:69755621-69755640 | Msa0994660:intron | 45.0% | |
TCCCACAAGAGAAAGCTCAA+AGG | + | chr6_4:69755626-69755645 | None:intergenic | 45.0% | |
CTTGTGGGATGCAAATGCAT+TGG | - | chr6_4:69755637-69755656 | Msa0994660:intron | 45.0% | |
GCAAAGTTAGGACTAAAGCC+AGG | - | chr6_4:69756381-69756400 | Msa0994660:intron | 45.0% | |
! | GATGTTGGTTGTGGTATTGG+AGG | - | chr6_4:69756417-69756436 | Msa0994660:intron | 45.0% |
! | TGGAGGAGGTGACTTTTACA+TGG | - | chr6_4:69756434-69756453 | Msa0994660:intron | 45.0% |
TATAAGTGGTTGAAGCCTGG+AGG | - | chr6_4:69756751-69756770 | Msa0994660:intron | 45.0% | |
!! | TAAATGTGTCGGTGTCGTGT+CGG | - | chr6_4:69757129-69757148 | Msa0994660:intron | 45.0% |
GTACAGACACTCCTCGAATT+AGG | + | chr6_4:69757190-69757209 | None:intergenic | 45.0% | |
TCACAGATGCTTGAGAATGC+TGG | - | chr6_4:69757337-69757356 | Msa0994660:intron | 45.0% | |
TGTAGCTGGTGAGCAGATAT+GGG | - | chr6_4:69758053-69758072 | Msa0994660:five_prime_UTR | 45.0% | |
!!! | AAATTATAAATTTATTTTGA+CGG | - | chr6_4:69751211-69751230 | Msa0994660:three_prime_UTR | 5.0% |
!!! | TATAATTTTATATTTGAAAT+CGG | - | chr6_4:69754833-69754852 | Msa0994660:intron | 5.0% |
!! | ATTAAAAATAATAATACAAA+TGG | + | chr6_4:69756282-69756301 | None:intergenic | 5.0% |
GATCCTGTTCAAGGAAAGGG+TGG | - | chr6_4:69751354-69751373 | Msa0994660:CDS | 50.0% | |
CTCTTCTTTGTCGAGATGGG+AGG | + | chr6_4:69751840-69751859 | None:intergenic | 50.0% | |
TTCTCCATCATCCATCGGAG+AGG | - | chr6_4:69752890-69752909 | Msa0994660:CDS | 50.0% | |
TCTCCATCATCCATCGGAGA+GGG | - | chr6_4:69752891-69752910 | Msa0994660:CDS | 50.0% | |
ATGTAGATCGGTCGCCAAAG+AGG | + | chr6_4:69753415-69753434 | None:intergenic | 50.0% | |
! | GCTGAATTGGCTCAGAAAGC+TGG | - | chr6_4:69754084-69754103 | Msa0994660:intron | 50.0% |
GAGGTGACGATCATGTCAAC+GGG | - | chr6_4:69755409-69755428 | Msa0994660:intron | 50.0% | |
TTTGTGAGCACAGGAGGACT+TGG | - | chr6_4:69755927-69755946 | Msa0994660:intron | 50.0% | |
CAAAAGTGGACGTGGTTCTC+TGG | - | chr6_4:69756028-69756047 | Msa0994660:intron | 50.0% | |
! | GTTGGTTGTGGTATTGGAGG+AGG | - | chr6_4:69756420-69756439 | Msa0994660:intron | 50.0% |
CTAGCTATCGAACGTGCCAT+CGG | - | chr6_4:69756513-69756532 | Msa0994660:intron | 50.0% | |
TACGACACGTGTTCGACACT+TGG | - | chr6_4:69757159-69757178 | Msa0994660:intron | 50.0% | |
ACTTGGACACGCCTAATTCG+AGG | - | chr6_4:69757176-69757195 | Msa0994660:intron | 50.0% | |
TGGAAGGCTAAGCAGATGAG+AGG | - | chr6_4:69758030-69758049 | Msa0994660:five_prime_UTR | 50.0% | |
! | AAGCAGATGAGAGGTGTAGC+TGG | - | chr6_4:69758039-69758058 | Msa0994660:five_prime_UTR | 50.0% |
GTGTAGCTGGTGAGCAGATA+TGG | - | chr6_4:69758052-69758071 | Msa0994660:five_prime_UTR | 50.0% | |
GTAGCTGGTGAGCAGATATG+GGG | - | chr6_4:69758054-69758073 | Msa0994660:five_prime_UTR | 50.0% | |
CCTCCACCCTTTCCTTGAAC+AGG | + | chr6_4:69751360-69751379 | None:intergenic | 55.0% | |
CCTGTTCAAGGAAAGGGTGG+AGG | - | chr6_4:69751357-69751376 | Msa0994660:CDS | 55.0% | |
CATCCCTCTCCGATGGATGA+TGG | + | chr6_4:69752897-69752916 | None:intergenic | 55.0% | |
CATCATCCATCGGAGAGGGA+TGG | - | chr6_4:69752895-69752914 | Msa0994660:CDS | 55.0% | |
CCAAAACCATCCCTCTCCGA+TGG | + | chr6_4:69752904-69752923 | None:intergenic | 55.0% | |
! | CCATCGGAGAGGGATGGTTT+TGG | - | chr6_4:69752901-69752920 | Msa0994660:CDS | 55.0% |
! | AGCTGGCCAATTGCTTGCTG+TGG | - | chr6_4:69754101-69754120 | Msa0994660:intron | 55.0% |
! | GGTCAAGGCTTTGTGAGCAC+AGG | - | chr6_4:69755918-69755937 | Msa0994660:intron | 55.0% |
! | CAAGGCTTTGTGAGCACAGG+AGG | - | chr6_4:69755921-69755940 | Msa0994660:intron | 55.0% |
!! | TGTCGGTGTCGTGTCGGTGT+CGG | - | chr6_4:69757135-69757154 | Msa0994660:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 69751082 | 69758349 | 69751082 | ID=Msa0994660;Name=Msa0994660 |
chr6_4 | mRNA | 69751082 | 69758349 | 69751082 | ID=Msa0994660-mRNA-1;Parent=Msa0994660;Name=Msa0994660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=437|0.90|0.91|1|0.90|0.91|12|248|487 |
chr6_4 | exon | 69751082 | 69751428 | 69751082 | ID=Msa0994660-mRNA-1:exon:12908;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69751877 | 69751951 | 69751877 | ID=Msa0994660-mRNA-1:exon:12907;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69752035 | 69752088 | 69752035 | ID=Msa0994660-mRNA-1:exon:12906;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69752546 | 69752707 | 69752546 | ID=Msa0994660-mRNA-1:exon:12905;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69752790 | 69753070 | 69752790 | ID=Msa0994660-mRNA-1:exon:12904;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69753483 | 69753624 | 69753483 | ID=Msa0994660-mRNA-1:exon:12903;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69753738 | 69753848 | 69753738 | ID=Msa0994660-mRNA-1:exon:12902;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69754266 | 69754409 | 69754266 | ID=Msa0994660-mRNA-1:exon:12901;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69754671 | 69754808 | 69754671 | ID=Msa0994660-mRNA-1:exon:12900;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69755312 | 69755419 | 69755312 | ID=Msa0994660-mRNA-1:exon:12899;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69757563 | 69757684 | 69757563 | ID=Msa0994660-mRNA-1:exon:12898;Parent=Msa0994660-mRNA-1 |
chr6_4 | exon | 69757885 | 69758349 | 69757885 | ID=Msa0994660-mRNA-1:exon:12897;Parent=Msa0994660-mRNA-1 |
chr6_4 | five_prime_UTR | 69757913 | 69758349 | 69757913 | ID=Msa0994660-mRNA-1:five_prime_utr;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69757885 | 69757912 | 69757885 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69757563 | 69757684 | 69757563 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69755312 | 69755419 | 69755312 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69754671 | 69754808 | 69754671 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69754266 | 69754409 | 69754266 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69753738 | 69753848 | 69753738 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69753483 | 69753624 | 69753483 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69752790 | 69753070 | 69752790 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69752546 | 69752707 | 69752546 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69752035 | 69752088 | 69752035 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69751877 | 69751951 | 69751877 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | CDS | 69751330 | 69751428 | 69751330 | ID=Msa0994660-mRNA-1:cds;Parent=Msa0994660-mRNA-1 |
chr6_4 | three_prime_UTR | 69751082 | 69751329 | 69751082 | ID=Msa0994660-mRNA-1:three_prime_utr;Parent=Msa0994660-mRNA-1 |
Gene Sequence |
Protein sequence |