AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855520 MtrunA17_Chr5g0433421 81.317 1033 125 5 1 999 1 999 0.0 1673
Msa0855520 MtrunA17_Chr5g0433511 84.162 543 37 3 506 1020 412 933 0.0 880
Msa0855520 MtrunA17_Chr5g0433511 75.929 565 102 6 1 540 2 557 0.0 811
Msa0855520 MtrunA17_Chr5g0433471 69.517 538 120 5 506 1002 383 917 0.0 684
Msa0855520 MtrunA17_Chr5g0433471 54.545 539 204 13 10 534 21 532 2.34e-171 526
Msa0855520 MtrunA17_Chr3g0109541 55.780 545 186 8 510 1008 389 924 4.02e-180 549
Msa0855520 MtrunA17_Chr3g0109541 45.818 550 244 15 9 534 13 532 1.08e-129 417
Msa0855520 MtrunA17_Chr5g0433371 54.074 540 194 8 510 999 380 915 9.87e-173 530
Msa0855520 MtrunA17_Chr5g0433371 46.217 489 220 13 9 482 16 476 4.02e-122 396
Msa0855520 MtrunA17_Chr5g0433351 63.017 411 127 5 1 401 1 396 1.10e-166 498
Msa0855520 MtrunA17_Chr5g0433351 68.519 54 14 1 589 639 417 470 3.51e-11 67.0
Msa0855520 MtrunA17_Chr5g0433361 61.384 448 119 6 589 997 451 883 1.14e-166 513
Msa0855520 MtrunA17_Chr5g0433361 60.000 420 122 8 11 401 30 432 3.61e-153 477
Msa0855520 MtrunA17_Chr5g0433321 50.186 538 192 10 510 999 382 891 1.99e-159 494
Msa0855520 MtrunA17_Chr5g0433321 41.698 530 261 12 9 517 15 517 3.51e-114 374
Msa0855520 MtrunA17_Chr3g0109551 44.559 487 206 12 556 991 473 946 3.01e-115 382
Msa0855520 MtrunA17_Chr3g0109551 41.743 436 209 13 1 420 6 412 7.59e-87 303
Msa0855520 MtrunA17_Chr3g0094211 39.956 453 222 7 587 990 426 877 1.09e-96 329
Msa0855520 MtrunA17_Chr3g0094211 29.567 416 251 13 10 411 17 404 4.59e-48 186
Msa0855520 MtrunA17_Chr8g0375181 40.940 447 214 7 586 984 507 951 5.52e-92 324
Msa0855520 MtrunA17_Chr8g0375181 31.724 435 243 13 10 422 82 484 5.38e-56 213
Msa0855520 MtrunA17_Chr8g0375191 42.247 445 203 10 586 984 438 874 8.33e-90 317
Msa0855520 MtrunA17_Chr8g0375191 31.175 417 237 13 10 408 25 409 1.95e-50 195
Msa0855520 MtrunA17_Chr8g0375151 41.387 447 209 9 586 984 402 843 3.32e-89 315
Msa0855520 MtrunA17_Chr8g0375151 31.926 379 214 12 40 403 8 357 2.89e-45 179
Msa0855520 MtrunA17_Chr5g0433331 84.076 157 25 0 843 999 1 157 6.93e-87 276
Msa0855520 MtrunA17_Chr5g0433341 65.775 187 35 2 683 840 1 187 6.63e-71 234
Msa0855520 MtrunA17_Chr3g0117771 47.317 205 88 5 32 235 124 309 1.44e-45 166
Msa0855520 MtrunA17_Chr8g0343741 35.331 317 161 11 682 963 960 1267 1.51e-41 166
Msa0855520 MtrunA17_Chr8g0375861 29.584 409 247 14 9 408 21 397 2.80e-37 152
Msa0855520 MtrunA17_Chr8g0375861 36.735 196 94 6 586 757 438 627 3.59e-22 103
Msa0855520 MtrunA17_Chr8g0375871 29.584 409 247 14 9 408 21 397 3.21e-37 152
Msa0855520 MtrunA17_Chr8g0375871 36.735 196 94 6 586 757 438 627 4.07e-22 103
Msa0855520 MtrunA17_Chr2g0334291 36.525 282 131 8 719 957 1791 2067 9.30e-37 151
Msa0855520 MtrunA17_Chr5g0422511 32.215 298 168 7 695 962 458 751 2.28e-35 145
Msa0855520 MtrunA17_Chr1g0173701 31.599 269 149 7 725 962 108 372 6.13e-33 132
Msa0855520 MtrunA17_Chr5g0435821 52.727 110 47 1 873 982 6 110 3.04e-30 127
Msa0855520 MtrunA17_Chr5g0400101 31.111 270 151 6 719 958 641 905 1.40e-27 121
Msa0855520 MtrunA17_Chr7g0257921 31.081 296 131 10 718 964 370 641 1.89e-21 100
Msa0855520 MtrunA17_Chr2g0304151 27.697 343 173 11 671 950 477 807 2.61e-20 97.4
Msa0855520 MtrunA17_Chr5g0394941 27.697 343 173 11 671 950 477 807 2.75e-20 97.4
Msa0855520 MtrunA17_Chr4g0030281 43.077 130 61 4 32 160 329 446 1.05e-15 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855520 AT1G65810.2 48.028 431 174 5 580 973 420 837 1.33e-122 400
Msa0855520 AT1G65810.2 38.009 442 234 10 11 432 22 443 1.74e-78 278
Msa0855520 AT1G65810.3 48.028 431 174 5 580 973 420 837 2.06e-122 400
Msa0855520 AT1G65810.3 38.009 442 234 10 11 432 22 443 2.73e-78 278
Msa0855520 AT1G65810.1 48.028 431 174 5 580 973 420 837 3.49e-122 400
Msa0855520 AT1G65810.1 38.009 442 234 10 11 432 22 443 3.44e-78 278
Msa0855520 AT5G52090.1 47.685 432 187 6 580 978 230 655 5.21e-120 384
Msa0855520 AT5G52090.1 40.807 223 107 6 193 408 1 205 1.17e-40 160
Msa0855520 AT5G37150.1 46.991 432 190 6 580 978 393 818 9.27e-116 377
Msa0855520 AT5G37150.1 36.650 412 207 14 5 408 3 368 4.07e-63 231
Msa0855520 AT5G37140.1 46.099 423 200 3 581 978 252 671 2.49e-113 367
Msa0855520 AT5G37140.1 41.739 230 111 5 184 408 8 219 4.29e-44 171
Msa0855520 AT4G05540.1 49.377 401 155 7 581 945 301 689 2.26e-112 364
Msa0855520 AT4G05540.1 33.429 350 180 14 136 466 10 325 4.23e-38 153
Msa0855520 AT5G37165.1 45.390 423 187 7 606 994 4 416 4.57e-110 348
Msa0855520 AT1G65780.1 37.361 629 283 17 422 999 305 873 3.38e-100 340
Msa0855520 AT1G65780.1 37.981 416 220 9 1 410 1 384 6.33e-73 263
Msa0855520 AT5G37030.1 55.442 294 100 3 712 975 344 636 2.76e-98 324
Msa0855520 AT5G37030.1 34.152 407 191 11 5 403 3 340 2.03e-48 184
Msa0855520 AT5G37160.1 33.560 441 220 13 5 408 12 416 6.52e-58 207
Msa0855520 AT2G19120.1 35.938 320 155 11 682 963 740 1047 7.06e-42 167
Msa0855520 AT4G30100.2 35.016 317 154 12 682 959 903 1206 8.94e-39 157
Msa0855520 AT4G30100.1 35.016 317 154 12 682 959 903 1206 8.94e-39 157
Msa0855520 AT4G15570.2 32.313 294 164 7 695 957 373 662 1.47e-37 152
Msa0855520 AT4G15570.4 32.313 294 164 7 695 957 373 662 1.47e-37 152
Msa0855520 AT4G15570.3 32.313 294 164 7 695 957 462 751 2.05e-37 152
Msa0855520 AT4G15570.1 32.313 294 164 7 695 957 462 751 2.05e-37 152
Msa0855520 AT1G16800.3 34.296 277 140 7 719 957 1649 1921 6.11e-34 142
Msa0855520 AT1G16800.2 34.296 277 140 7 719 957 1719 1991 6.13e-34 142
Msa0855520 AT1G16800.1 34.296 277 140 7 719 957 1607 1879 6.21e-34 142
Msa0855520 AT5G47010.1 29.545 308 177 8 683 958 618 917 1.85e-28 124
Msa0855520 AT1G05460.2 30.921 304 148 11 697 950 518 809 2.39e-19 94.7
Msa0855520 AT1G05460.1 30.592 304 149 10 697 950 518 809 5.71e-19 93.6
Msa0855520 AT2G03270.1 29.739 306 141 11 694 950 342 622 9.04e-19 92.0
Msa0855520 AT5G35970.1 28.808 302 159 10 693 949 639 929 4.64e-16 84.0

Find 157 sgRNAs with CRISPR-Local

Find 618 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACAACAAATGTTCGTATT+TGG 0.157759 5_4:+48856518 Msa0855520:CDS
ATCAACAGTTTGCTTAAATT+TGG 0.159588 5_4:-48858055 None:intergenic
TTAACTGAAATGAAAGATTT+TGG 0.166091 5_4:-48857976 None:intergenic
TACCATATTGCCTATGTTAA+TGG 0.194743 5_4:+48856373 Msa0855520:CDS
CTTCAACATTGCATTCTTAT+AGG 0.203067 5_4:+48858366 Msa0855520:CDS
TTAAGTGACATTGTGCTATT+TGG 0.225562 5_4:+48857196 Msa0855520:CDS
ATGCTAATACCAAACTGATA+TGG 0.238865 5_4:+48857005 Msa0855520:CDS
GTTAATGTTCGTTCTGTTGA+TGG 0.262048 5_4:+48859080 Msa0855520:CDS
TTATAGATATTGTACTTTCT+TGG 0.269492 5_4:+48855372 Msa0855520:CDS
TCCTAGTAAACAATATTTCT+TGG 0.275195 5_4:+48857354 Msa0855520:CDS
AATGATTGTTTAGCAAATAA+TGG 0.290512 5_4:+48855322 Msa0855520:intron
CCCCATTAACATAGGCAATA+TGG 0.296858 5_4:-48856375 None:intergenic
AGATATTGTCTTTGGATATT+AGG 0.300734 5_4:+48859300 Msa0855520:intron
AACATCCATCTTCATGCATT+TGG 0.305607 5_4:-48856437 None:intergenic
TCATAAACTTGAGCATTATA+TGG 0.306286 5_4:-48859005 None:intergenic
ACCATATTGCCTATGTTAAT+GGG 0.311487 5_4:+48856374 Msa0855520:CDS
TTTCTTGGAGATGTCCAAAA+AGG 0.312865 5_4:+48857369 Msa0855520:CDS
TCATTTCTTTCCAAACTTGA+TGG 0.314537 5_4:-48858114 None:intergenic
GGAGTAATTATGTTTGAAAT+AGG 0.314940 5_4:-48859847 None:intergenic
CAATTTGTGAAGCAGAGATT+TGG 0.321672 5_4:+48857901 Msa0855520:CDS
ACCCTTTGACTTTGAGTTCA+AGG 0.323180 5_4:-48856545 None:intergenic
CAAGGAAACAAGCTTATTGA+TGG 0.334295 5_4:-48858621 None:intergenic
GAAAGCATTCCTGCTTGCTT+TGG 0.336536 5_4:+48858090 Msa0855520:CDS
CTAACAATTGTTCTCCTTTG+AGG 0.337621 5_4:+48848080 Msa0855520:five_prime_UTR
TTTGAGAAAATTTGCTCTCT+AGG 0.357550 5_4:-48857700 None:intergenic
TGCTAATACCAAACTGATAT+GGG 0.358247 5_4:+48857006 Msa0855520:CDS
GATTTATCTTCAAGCTTGTC+TGG 0.361546 5_4:+48856115 Msa0855520:CDS
TAGCCAGTAGTGATTCTATC+TGG 0.363659 5_4:+48859337 Msa0855520:CDS
GTGCATACAAGGAAAATATA+AGG 0.370607 5_4:+48857782 Msa0855520:CDS
TGATGTCTCACTTTAAATTC+AGG 0.371221 5_4:-48858180 None:intergenic
TTGCTTTGGACCATCAAGTT+TGG 0.374499 5_4:+48858104 Msa0855520:CDS
TGCAACACTGCAGTATTAGT+TGG 0.387175 5_4:-48857115 None:intergenic
GTAATTCTTACATTGAGATT+AGG 0.388186 5_4:-48856601 None:intergenic
GGTTACAAGCTGTGCTAGTA+TGG 0.391737 5_4:+48856970 Msa0855520:CDS
TCTTGACTTGTTAAAATCAA+TGG 0.392539 5_4:+48858014 Msa0855520:CDS
ATAATGGAGAAGAGTAGAAA+TGG 0.394778 5_4:+48855338 Msa0855520:exon
GAGAAGAGTAGAAATGGAAG+TGG 0.395897 5_4:+48855344 Msa0855520:CDS
TGTCTTGCTTAACTTTCTCC+TGG 0.405353 5_4:-48859031 None:intergenic
TTCAGTTCCATCATACCATA+TGG 0.406454 5_4:+48856221 Msa0855520:CDS
GCTTGTAACCGCATCTTGTT+GGG 0.416012 5_4:-48856957 None:intergenic
GAAAATTATGAACCTGCATC+AGG 0.416436 5_4:+48856283 Msa0855520:CDS
TTATTGCTATTACATACATT+AGG 0.420584 5_4:+48856311 Msa0855520:CDS
ATATCTACTGTGAGATCAAA+TGG 0.422646 5_4:+48859134 Msa0855520:CDS
TCCAAGAAATATTGTTTACT+AGG 0.427879 5_4:-48857355 None:intergenic
CATGATTCCGTTACAGCTCC+CGG 0.429953 5_4:+48858341 Msa0855520:CDS
GAATCTGATAGAGATGAAAA+TGG 0.430012 5_4:+48856259 Msa0855520:CDS
TGATTCACCAGCTTCAAACT+TGG 0.432632 5_4:-48859686 None:intergenic
TATAGTAAGAGCTTTCTTGA+AGG 0.437987 5_4:+48858699 Msa0855520:CDS
TGGTCTGATTATGAGGTTTG+AGG 0.438685 5_4:+48857462 Msa0855520:CDS
TGCTGACGAGGACATGAAAC+TGG 0.441494 5_4:+48859404 Msa0855520:CDS
GTTGCTGACTTAAATGTCTC+TGG 0.443060 5_4:-48856043 None:intergenic
CGTTCTGTTGATGGTTTCCA+AGG 0.443849 5_4:+48859089 Msa0855520:CDS
TCACTTGACGATGATACATA+TGG 0.444215 5_4:+48857172 Msa0855520:CDS
TGGAAAGAAATGATTGCCTT+CGG 0.444445 5_4:+48858124 Msa0855520:CDS
CTACGCTTTGTGACAAAGGT+TGG 0.445565 5_4:+48848120 Msa0855520:five_prime_UTR
CTTAAATTTGGCTTGACTCA+AGG 0.450996 5_4:-48858043 None:intergenic
GCTCCATGGTCATGATACTT+TGG 0.451138 5_4:-48857879 None:intergenic
TCAAATGGAAGTGGTAATAT+CGG 0.454389 5_4:+48859149 Msa0855520:CDS
GGAACTATGGTCTGATTATG+AGG 0.460379 5_4:+48857455 Msa0855520:CDS
AAGATAAGTAAGGGGAACTA+TGG 0.462535 5_4:+48857442 Msa0855520:CDS
CTGAAATACAAGCATTATAC+AGG 0.463169 5_4:-48856840 None:intergenic
ATGAAAGTGGAAAGTTATCC+AGG 0.463937 5_4:+48857232 Msa0855520:CDS
AGCTTGTAACCGCATCTTGT+TGG 0.464083 5_4:-48856958 None:intergenic
TAATATCTTCCTCACCGCCT+TGG 0.472392 5_4:-48859106 None:intergenic
TGCACAGTGTTCGTTCGCTA+AGG 0.472809 5_4:+48859711 Msa0855520:CDS
TTGAGAAAATTTGCTCTCTA+GGG 0.475004 5_4:-48857699 None:intergenic
AGGGATATGTGAAGAGAGCA+AGG 0.483369 5_4:+48857836 Msa0855520:CDS
AATCACTAAGCTATACCAAT+TGG 0.484827 5_4:+48857510 Msa0855520:CDS
CGGGAGCTGTAACGGAATCA+TGG 0.485294 5_4:-48858340 None:intergenic
TGCTCAAGTTTATGAAATCC+AGG 0.488265 5_4:+48859013 Msa0855520:CDS
ACCAAATGTCTCCTCACCCT+TGG 0.492957 5_4:-48858757 None:intergenic
CGCTTTGTGACAAAGGTTGG+AGG 0.494186 5_4:+48848123 Msa0855520:five_prime_UTR
TCCAAGGGTGAGGAGACATT+TGG 0.494736 5_4:+48858756 Msa0855520:CDS
ATCTTCCAAATGCATGAAGA+TGG 0.494801 5_4:+48856432 Msa0855520:CDS
TTCAGGAAGCGAAATTGAGT+TGG 0.494953 5_4:-48858163 None:intergenic
AGTTGTACTCTCCAACCATA+TGG 0.501731 5_4:-48856236 None:intergenic
GCCTTGAACTCAAAGTCAAA+GGG 0.503702 5_4:+48856544 Msa0855520:CDS
TACAAGGAAAATATAAGGTA+TGG 0.503727 5_4:+48857787 Msa0855520:CDS
AGCTTTCATCCTTGACAGCT+AGG 0.509422 5_4:-48858677 None:intergenic
AGCTTATTGATGGATGCATT+CGG 0.510495 5_4:-48858611 None:intergenic
GCTTTCATCCTTGACAGCTA+GGG 0.513960 5_4:-48858676 None:intergenic
AGCTTCAAACTTGGGCCCCT+AGG 0.515558 5_4:-48859677 None:intergenic
TGGTGGTCCCCATATCAGTT+TGG 0.515701 5_4:-48857014 None:intergenic
TTTAATCATCTCAGAAATGA+CGG 0.516197 5_4:-48858814 None:intergenic
TCATGCATACAAGATAAGTA+AGG 0.516685 5_4:+48857432 Msa0855520:CDS
GTTCCATCATACCATATGGT+TGG 0.518572 5_4:+48856225 Msa0855520:CDS
GATTCACCAGCTTCAAACTT+GGG 0.519694 5_4:-48859685 None:intergenic
TCTCCAACCATATGGTATGA+TGG 0.520600 5_4:-48856228 None:intergenic
TCATGCAGTGCTATGCTGAA+TGG 0.523619 5_4:+48857293 Msa0855520:CDS
GCAATAAGATCTCCTGATGC+AGG 0.523819 5_4:-48856295 None:intergenic
AAATAATAAGAGAATGAAAG+TGG 0.526470 5_4:+48857219 Msa0855520:CDS
AAACTGATATGGGGACCACC+AGG 0.527115 5_4:+48857016 Msa0855520:CDS
TATTAATATATCCAAGGGTG+AGG 0.528313 5_4:+48858746 Msa0855520:CDS
ACAAAGAAGAAAGTTAGCAT+TGG 0.535667 5_4:+48858972 Msa0855520:CDS
AGCCTTGAACTCAAAGTCAA+AGG 0.539380 5_4:+48856543 Msa0855520:CDS
TTCGGATGCCCTAGCTGTCA+AGG 0.542296 5_4:+48858668 Msa0855520:CDS
AAGCTTAATGCAGCTGCTTG+AGG 0.542347 5_4:+48857675 Msa0855520:CDS
GAAAGTTAAGCAAGACACTT+GGG 0.544723 5_4:+48859037 Msa0855520:CDS
TGCAGTATTAGTTGGAGCAC+AGG 0.546178 5_4:-48857107 None:intergenic
GTGGCAGGTCAAGGAAACCT+AGG 0.546870 5_4:+48859660 Msa0855520:intron
ATCTGCATATAGTGCATACA+AGG 0.548269 5_4:+48857771 Msa0855520:CDS
GTTTGAGGATTATGTTCAGA+AGG 0.548737 5_4:+48857477 Msa0855520:CDS
TGAAGACCCGGGAGCTGTAA+CGG 0.548874 5_4:-48858348 None:intergenic
AATACTACGCTTTGTGACAA+AGG 0.549299 5_4:+48848116 Msa0855520:five_prime_UTR
CATGCATACAAGATAAGTAA+GGG 0.553040 5_4:+48857433 Msa0855520:CDS
CGGACATAGCTTGAAGAACA+TGG 0.553176 5_4:+48858782 Msa0855520:CDS
TGGCAGGTCAAGGAAACCTA+GGG 0.554885 5_4:+48859661 Msa0855520:intron
GAGCTAATGTTGCAATGACA+AGG 0.555800 5_4:+48859192 Msa0855520:CDS
GCACAGTGTTCGTTCGCTAA+GGG 0.557459 5_4:+48859712 Msa0855520:CDS
TAGGGGCCCAAGTTTGAAGC+TGG 0.559189 5_4:+48859679 Msa0855520:CDS
ATATGGGGACCACCAGGGAC+AGG 0.561447 5_4:+48857022 Msa0855520:CDS
AGAAGAGTAGAAATGGAAGT+GGG 0.561454 5_4:+48855345 Msa0855520:CDS
CTTGATGGTCCAAAGCAAGC+AGG 0.561818 5_4:-48858099 None:intergenic
ATGATTCCGTTACAGCTCCC+GGG 0.561917 5_4:+48858342 Msa0855520:CDS
AGAAAGTTAAGCAAGACACT+TGG 0.566618 5_4:+48859036 Msa0855520:CDS
CTGCTTCACAAATTGCTCCA+TGG 0.567182 5_4:-48857893 None:intergenic
ATGTTGCAATGACAAGGGCT+AGG 0.572309 5_4:+48859198 Msa0855520:CDS
TCAATTTCAGACTTCCTCAA+AGG 0.573595 5_4:-48848094 None:intergenic
TATTTGTAGCAAAATCATCA+AGG 0.574237 5_4:-48857738 None:intergenic
ACTGTGAGATCAAATGGAAG+TGG 0.575364 5_4:+48859140 Msa0855520:CDS
TCATCATAGAACTCTTTGCA+AGG 0.575937 5_4:-48858639 None:intergenic
ATTAACATAGGCAATATGGT+AGG 0.576989 5_4:-48856371 None:intergenic
AGAATGCAATGTTGAAGACC+CGG 0.584439 5_4:-48858360 None:intergenic
GAAGCGAAATTGAGTTGGAA+AGG 0.586487 5_4:-48858158 None:intergenic
CGTGTTTCCTCAAACAATAG+AGG 0.588095 5_4:-48856088 None:intergenic
TCTCCAGATAGAATCACTAC+TGG 0.590428 5_4:-48859340 None:intergenic
TTCATTGAGAACATCCTCGA+GGG 0.591146 5_4:-48855396 None:intergenic
CAAGTTGAAATCAAGAACAT+TGG 0.591895 5_4:+48857084 Msa0855520:CDS
CTATTTACTATGACAAAGTG+TGG 0.592488 5_4:+48859901 Msa0855520:three_prime_UTR
AGGATTATGTTCAGAAGGCA+CGG 0.592537 5_4:+48857482 Msa0855520:CDS
AGAAAGATATCTTCAAGACC+TGG 0.599408 5_4:-48857250 None:intergenic
ATTTAAAGTGAGACATCAAG+TGG 0.599950 5_4:+48858185 Msa0855520:CDS
ATTTGTAGCAAAATCATCAA+GGG 0.604824 5_4:-48857737 None:intergenic
TCTGTTGATGGTTTCCAAGG+CGG 0.607165 5_4:+48859092 Msa0855520:CDS
CTGTTATCATAATGCTGACG+AGG 0.607604 5_4:+48859392 Msa0855520:CDS
TTAACATAGGCAATATGGTA+GGG 0.609308 5_4:-48856370 None:intergenic
GAATGCAATGTTGAAGACCC+GGG 0.613310 5_4:-48858359 None:intergenic
TAATACTGCAGTGTTGCAAG+TGG 0.613483 5_4:+48857120 Msa0855520:CDS
CCATATTGCCTATGTTAATG+GGG 0.615680 5_4:+48856375 Msa0855520:CDS
TGAAAATCTTTACGAAGACA+AGG 0.616290 5_4:+48855415 Msa0855520:CDS
AAAGGAAACTTAGTATCCGA+AGG 0.621936 5_4:-48858140 None:intergenic
GAATGAATCCCAACAAGATG+CGG 0.631351 5_4:+48856949 Msa0855520:CDS
CAGTGTTGCAAGTGGCAACA+AGG 0.635731 5_4:+48857128 Msa0855520:CDS
ATTGATGCTATACTTCCTCA+AGG 0.637505 5_4:+48859519 Msa0855520:CDS
GGTGAGGAGACATTTGGTCG+CGG 0.639719 5_4:+48858762 Msa0855520:CDS
TGTACTTTCTTGGACCCTCG+AGG 0.647281 5_4:+48855382 Msa0855520:CDS
ATACCAAAGTATCATGACCA+TGG 0.651702 5_4:+48857876 Msa0855520:CDS
AGCTAATGTTGCAATGACAA+GGG 0.653965 5_4:+48859193 Msa0855520:CDS
GCTAATACCAAACTGATATG+GGG 0.655141 5_4:+48857007 Msa0855520:CDS
TCCAGCGCTAGTCAAAAGCA+AGG 0.658529 5_4:+48858404 Msa0855520:CDS
ATGCATACAAGATAAGTAAG+GGG 0.667893 5_4:+48857434 Msa0855520:CDS
TGATGGTTTCCAAGGCGGTG+AGG 0.670301 5_4:+48859097 Msa0855520:CDS
AACTGATATGGGGACCACCA+GGG 0.682358 5_4:+48857017 Msa0855520:CDS
CATGATATTGTCAATCACAA+CGG 0.683039 5_4:-48859749 None:intergenic
TTTCATTGAGAACATCCTCG+AGG 0.686631 5_4:-48855397 None:intergenic
ATAATGCTTGTATTTCAGAG+TGG 0.690857 5_4:+48856845 Msa0855520:CDS
GGCAGGTCAAGGAAACCTAG+GGG 0.752633 5_4:+48859662 Msa0855520:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATAAATAAAAAA+GGG - chr5_4:48848238-48848257 None:intergenic 0.0%
!! AATAAATAAATAAATAAAAA+AGG - chr5_4:48848239-48848258 None:intergenic 0.0%
!! ATAAAAATTAATAAAATAAT+AGG - chr5_4:48848590-48848609 None:intergenic 0.0%
!! TAATTTAATGTGATTTAATT+TGG - chr5_4:48848669-48848688 None:intergenic 10.0%
!! TACAATAGTTTAATATAAAA+TGG - chr5_4:48849095-48849114 None:intergenic 10.0%
!!! ATAAACTTTTTTTAAGTTTT+CGG + chr5_4:48849339-48849358 Msa0855520:intron 10.0%
!!! AATTATACAATTTTTTTTGA+AGG + chr5_4:48849398-48849417 Msa0855520:intron 10.0%
!! TACATGAAATAATATATAAT+TGG + chr5_4:48849443-48849462 Msa0855520:intron 10.0%
!!! TATTAGTTTTGAATTATTAT+AGG + chr5_4:48849552-48849571 Msa0855520:intron 10.0%
!!! ATTAGTTTTGAATTATTATA+GGG + chr5_4:48849553-48849572 Msa0855520:intron 10.0%
!!! TTTAAAACCAATATTTAATT+TGG - chr5_4:48849876-48849895 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr5_4:48849959-48849978 None:intergenic 10.0%
!!! ATTTGATTTTTAGAATTTTT+TGG - chr5_4:48850746-48850765 None:intergenic 10.0%
!! TAAAAATCAAATAAAACTAA+TGG + chr5_4:48850754-48850773 Msa0855520:intron 10.0%
!!! TATTTTATTTAACAAAAATC+GGG - chr5_4:48850967-48850986 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr5_4:48849959-48849978 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr5_4:48849959-48849978 None:intergenic 10.0%
!! AATAGTATATATATAAAGTA+AGG - chr5_4:48849959-48849978 None:intergenic 10.0%
!! AAAAATCGTAAAAAAAATTT+CGG - chr5_4:48851864-48851883 None:intergenic 10.0%
!!! AAATTAAAACTGAAATTTTT+AGG - chr5_4:48851890-48851909 None:intergenic 10.0%
!!! AAATTTTGAAATTTTTTTCA+AGG + chr5_4:48851986-48852005 Msa0855520:intron 10.0%
!!! ATATTCTTTTAATAAAATAG+AGG + chr5_4:48852630-48852649 Msa0855520:intron 10.0%
!!! AATGATTTTCATATATTTTT+TGG - chr5_4:48853259-48853278 None:intergenic 10.0%
!!! TATTTTAATTTGTAACAAAA+CGG - chr5_4:48853803-48853822 None:intergenic 10.0%
!! CAAAATTAACTATAAAAAAA+TGG + chr5_4:48853921-48853940 Msa0855520:intron 10.0%
!!! ATAGAAAAATTTATTTTGAT+TGG + chr5_4:48854066-48854085 Msa0855520:intron 10.0%
!!! TAGAAAAATTTATTTTGATT+GGG + chr5_4:48854067-48854086 Msa0855520:intron 10.0%
!! AAAAGTTACAATTTGTAAAT+TGG + chr5_4:48848627-48848646 Msa0855520:intron 15.0%
!! TAAAAATTAATTAATGATGG+TGG + chr5_4:48848926-48848945 Msa0855520:intron 15.0%
!! AAAAATTAATTAATGATGGT+GGG + chr5_4:48848927-48848946 Msa0855520:intron 15.0%
!! TCTTCATTTAGTAAAATAAA+TGG - chr5_4:48848999-48849018 None:intergenic 15.0%
!!! ATTTATTTTACTAAATGAAG+AGG + chr5_4:48848998-48849017 Msa0855520:intron 15.0%
!! ATTAAACTATTGTATTTATC+CGG + chr5_4:48849101-48849120 Msa0855520:intron 15.0%
!! ATTTATGCCAAATTAAATAT+TGG + chr5_4:48849866-48849885 Msa0855520:intron 15.0%
!! AATTGATTATTTATAGTTGA+AGG + chr5_4:48849991-48850010 Msa0855520:intron 15.0%
!! TTTCTGTTACATAAAATATT+AGG + chr5_4:48850039-48850058 Msa0855520:intron 15.0%
!! ATATTAGGAATTCAATAAAA+AGG + chr5_4:48850054-48850073 Msa0855520:intron 15.0%
!! ACTAGTATATATATAAAGTA+AGG - chr5_4:48850215-48850234 None:intergenic 15.0%
!!! GAATTTTTAGAAATTTTACA+GGG - chr5_4:48850535-48850554 None:intergenic 15.0%
!!! CTGTAAAATTTCTAAAAATT+CGG + chr5_4:48850534-48850553 Msa0855520:intron 15.0%
!!! AAAATTCGGATTTTAAAATT+CGG + chr5_4:48850548-48850567 Msa0855520:intron 15.0%
!!! AGTTTTTTGTTGTTTTTAAA+AGG - chr5_4:48850667-48850686 None:intergenic 15.0%
!!! TTTTTATGATTTTATTTGAC+AGG - chr5_4:48850709-48850728 None:intergenic 15.0%
!!! AAAACTAATGGAAATTTTTT+CGG + chr5_4:48850766-48850785 Msa0855520:intron 15.0%
!!! TGAAATAGTTGTTATTAAAT+AGG + chr5_4:48851606-48851625 Msa0855520:intron 15.0%
!!! GAAATAGTTGTTATTAAATA+GGG + chr5_4:48851607-48851626 Msa0855520:intron 15.0%
!! AAAAAACAAAAAATAAGACA+GGG - chr5_4:48851809-48851828 None:intergenic 15.0%
!! AAAAAAACAAAAAATAAGAC+AGG - chr5_4:48851810-48851829 None:intergenic 15.0%
!! AAAATCGTAAAAAAAATTTC+GGG - chr5_4:48851863-48851882 None:intergenic 15.0%
!! CCACTTTATAATATTTAATA+GGG - chr5_4:48852206-48852225 None:intergenic 15.0%
!! ACCACTTTATAATATTTAAT+AGG - chr5_4:48852207-48852226 None:intergenic 15.0%
!!! TGAGTTTGTTTTTATATAAA+AGG + chr5_4:48852819-48852838 Msa0855520:intron 15.0%
!!! GAGTTTGTTTTTATATAAAA+GGG + chr5_4:48852820-48852839 Msa0855520:intron 15.0%
!!! AGTTTGTTTTTATATAAAAG+GGG + chr5_4:48852821-48852840 Msa0855520:intron 15.0%
!!! TTTTTTTATGTATTGTATCT+AGG - chr5_4:48853039-48853058 None:intergenic 15.0%
!! TCTCATTTATAAATTATACA+GGG - chr5_4:48853355-48853374 None:intergenic 15.0%
!! TTCTCATTTATAAATTATAC+AGG - chr5_4:48853356-48853375 None:intergenic 15.0%
!!! ACAAAAAAAAAAAAAAGCAT+AGG - chr5_4:48853478-48853497 None:intergenic 15.0%
!!! ATTTTAATTTGTAACAAAAC+GGG - chr5_4:48853802-48853821 None:intergenic 15.0%
!!! AATCATGATTTTTTTTTGTT+TGG + chr5_4:48853867-48853886 Msa0855520:intron 15.0%
!!! GTTTTTAAAAGAGAAAATAT+AGG + chr5_4:48854163-48854182 Msa0855520:intron 15.0%
!!! TTTTAAAAGAGAAAAAATAG+AGG + chr5_4:48854385-48854404 Msa0855520:intron 15.0%
!! TTTAAAAGAGAAAAAATAGA+GGG + chr5_4:48854386-48854405 Msa0855520:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr5_4:48854650-48854669 None:intergenic 15.0%
!! GAAAAAAATTATTATTGCAT+TGG - chr5_4:48854690-48854709 None:intergenic 15.0%
!!! TTTTAAAAGTAGTAATACTT+TGG - chr5_4:48854754-48854773 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr5_4:48854781-48854800 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr5_4:48854780-48854799 Msa0855520:intron 15.0%
!! AAAAAAAAAAACTGTAGAAT+AGG + chr5_4:48855055-48855074 Msa0855520:intron 15.0%
!!! AATCATTATTGAGATTTTAA+CGG - chr5_4:48855546-48855565 None:intergenic 15.0%
!!! ATTTTGTTATGGATAAAAAT+AGG + chr5_4:48857392-48857411 Msa0855520:CDS 15.0%
!!! GTTATTATATTTTTAGATTG+CGG + chr5_4:48858509-48858528 Msa0855520:intron 15.0%
!!! TTCTTTTATTAATATATCCA+AGG + chr5_4:48858740-48858759 Msa0855520:CDS 15.0%
!!! TCTTTTATTAATATATCCAA+GGG + chr5_4:48858741-48858760 Msa0855520:CDS 15.0%
!! TTAAAGATAATTAACACAAA+TGG - chr5_4:48858868-48858887 None:intergenic 15.0%
!!! TTTTGATTTGATTATTTGCA+GGG + chr5_4:48848039-48848058 Msa0855520:five_prime_UTR 20.0%
!! AAAAAAACAAGGATAAGAAT+GGG - chr5_4:48848167-48848186 None:intergenic 20.0%
!! AAAAAAAACAAGGATAAGAA+TGG - chr5_4:48848168-48848187 None:intergenic 20.0%
!!! ACTTTCTAGATTTTACAAAA+TGG + chr5_4:48848371-48848390 Msa0855520:intron 20.0%
!!! ACGACATACAATTTTATTTT+TGG + chr5_4:48848713-48848732 Msa0855520:intron 20.0%
!!! AATATAAAGCATTGAAAAGT+AGG + chr5_4:48848804-48848823 Msa0855520:intron 20.0%
!! TAAATTTACCTAGAAATCAA+TGG - chr5_4:48849059-48849078 None:intergenic 20.0%
!! AAATAAAATTTATCACGGAT+TGG + chr5_4:48849181-48849200 Msa0855520:intron 20.0%
!! GCACATACATATAAAATTAA+CGG + chr5_4:48849282-48849301 Msa0855520:intron 20.0%
!! CACATACATATAAAATTAAC+GGG + chr5_4:48849283-48849302 Msa0855520:intron 20.0%
!! TCAAACAAAAATCTCTAATT+AGG - chr5_4:48849473-48849492 None:intergenic 20.0%
!! GCTAAGTTTAAATTATATAG+AGG - chr5_4:48849704-48849723 None:intergenic 20.0%
!! AAAAATATTGCAAATAAACG+TGG + chr5_4:48850166-48850185 Msa0855520:intron 20.0%
!! AACTTATTTAATATCTAACC+CGG - chr5_4:48850256-48850275 None:intergenic 20.0%
!!! CGAATTTTTAGAAATTTTAC+AGG - chr5_4:48850536-48850555 None:intergenic 20.0%
!! AGAAAATCAGAAAAAATTCA+AGG - chr5_4:48850905-48850924 None:intergenic 20.0%
!!! TTGAATTTTTTCTGATTTTC+TGG + chr5_4:48850904-48850923 Msa0855520:intron 20.0%
!!! TGAATTTTTTCTGATTTTCT+GGG + chr5_4:48850905-48850924 Msa0855520:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr5_4:48851014-48851033 Msa0855520:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr5_4:48851014-48851033 Msa0855520:intron 20.0%
!! AAAAATATTGAGAATGAATG+TGG + chr5_4:48851014-48851033 Msa0855520:intron 20.0%
!! AAAAACAAAAAATAAGACAG+GGG - chr5_4:48851808-48851827 None:intergenic 20.0%
!! CCCTATTAAATATTATAAAG+TGG + chr5_4:48852203-48852222 Msa0855520:intron 20.0%
!! TAAAATCACAATAATGATAG+CGG + chr5_4:48852259-48852278 Msa0855520:intron 20.0%
!! TCAATGATACATAAAAATCA+CGG - chr5_4:48852300-48852319 None:intergenic 20.0%
!! TGTATCTTCTAAATAATAGT+GGG - chr5_4:48852439-48852458 None:intergenic 20.0%
!! TAAAAGAATATTATCCATTG+CGG - chr5_4:48852621-48852640 None:intergenic 20.0%
!!! GTTTGTTTTTATATAAAAGG+GGG + chr5_4:48852822-48852841 Msa0855520:intron 20.0%
!!! TAAAATGATTTTCTACATTC+AGG + chr5_4:48852848-48852867 Msa0855520:intron 20.0%
!! TATTATATCCTTTCAAAGAA+TGG - chr5_4:48853180-48853199 None:intergenic 20.0%
!! AACCAATACTTAAAAAAACA+CGG - chr5_4:48853549-48853568 None:intergenic 20.0%
!! TTTAAAAGAGAAAATATAGG+AGG + chr5_4:48854166-48854185 Msa0855520:intron 20.0%
!! AATGACTACTCAAAAAATTA+AGG + chr5_4:48854224-48854243 Msa0855520:intron 20.0%
!! ATGACTACTCAAAAAATTAA+GGG + chr5_4:48854225-48854244 Msa0855520:intron 20.0%
!!! ATTAAGTTAGTGTGTTTTAT+CGG + chr5_4:48854341-48854360 Msa0855520:intron 20.0%
!! ACGTGTTAAAAAATTAAGAA+GGG + chr5_4:48854448-48854467 Msa0855520:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr5_4:48854771-48854790 Msa0855520:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr5_4:48854814-48854833 None:intergenic 20.0%
!! TAACACTTCTATAAAATTGT+AGG + chr5_4:48854942-48854961 Msa0855520:intron 20.0%
!! AACACTTCTATAAAATTGTA+GGG + chr5_4:48854943-48854962 Msa0855520:intron 20.0%
!! ATACACAATGTAATAGTAAA+TGG - chr5_4:48855269-48855288 None:intergenic 20.0%
!! AATGATTGTTTAGCAAATAA+TGG + chr5_4:48855322-48855341 Msa0855520:intron 20.0%
!! TTATAGATATTGTACTTTCT+TGG + chr5_4:48855372-48855391 Msa0855520:CDS 20.0%
!!! ATTTTTTGCAACTACTAAAA+AGG - chr5_4:48855658-48855677 None:intergenic 20.0%
!! CAAAAGCTTCTTAAATTTAT+TGG + chr5_4:48855725-48855744 Msa0855520:intron 20.0%
!! CTAATCATTCAAATGTTATA+AGG - chr5_4:48855963-48855982 None:intergenic 20.0%
!!! TTATTGCTATTACATACATT+AGG + chr5_4:48856311-48856330 Msa0855520:CDS 20.0%
!!! TTTCTGTGTATTATTTTTCA+TGG - chr5_4:48856473-48856492 None:intergenic 20.0%
!!! AAACTTTTTCAATAATGTTG+AGG - chr5_4:48856576-48856595 None:intergenic 20.0%
!!! ACCTTTATTTGATATAATAC+TGG + chr5_4:48856649-48856668 Msa0855520:intron 20.0%
!! TCCAGTATTATATCAAATAA+AGG - chr5_4:48856653-48856672 None:intergenic 20.0%
!! TTTCAATTATTATGCAAGTA+TGG + chr5_4:48856753-48856772 Msa0855520:intron 20.0%
!! ATTTAGCTGCAAAAAAAAAA+AGG - chr5_4:48856810-48856829 None:intergenic 20.0%
!! AAATAATAAGAGAATGAAAG+TGG + chr5_4:48857219-48857238 Msa0855520:CDS 20.0%
!!! TTAACTGAAATGAAAGATTT+TGG - chr5_4:48857979-48857998 None:intergenic 20.0%
!! CTAAAAAAACATCATAATTG+AGG + chr5_4:48858464-48858483 Msa0855520:intron 20.0%
!! GTTCTATGATGAAAAAATTT+CGG + chr5_4:48858650-48858669 Msa0855520:CDS 20.0%
!! ATGATTAAAAACCTAAGAAA+AGG + chr5_4:48858828-48858847 Msa0855520:CDS 20.0%
!! TACTTAGATGGAAAAAAATA+AGG - chr5_4:48859609-48859628 None:intergenic 20.0%
!!! TTAATTTGCAACATTTTTTG+TGG + chr5_4:48859641-48859660 Msa0855520:intron 20.0%
!! TAGATTACAAAAACAACAAA+AGG - chr5_4:48859871-48859890 None:intergenic 20.0%
!!! CTTTTGATTTGATTATTTGC+AGG + chr5_4:48848038-48848057 Msa0855520:five_prime_UTR 25.0%
! GAAGAAGAAGAAAAAAAACA+AGG - chr5_4:48848178-48848197 None:intergenic 25.0%
! GATTGGTGTATAAAATGAAA+TGG + chr5_4:48848331-48848350 Msa0855520:intron 25.0%
! TGTATAAAATGAAATGGAGT+GGG + chr5_4:48848337-48848356 Msa0855520:intron 25.0%
! AATAAATGGAGTATGCAATT+TGG - chr5_4:48848985-48849004 None:intergenic 25.0%
! TCCGCAAATAAAATTTATCA+CGG + chr5_4:48849176-48849195 Msa0855520:intron 25.0%
!!! TCCGTGATAAATTTTATTTG+CGG - chr5_4:48849180-48849199 None:intergenic 25.0%
! AAGTTCAAAAACTTCAAATC+AGG - chr5_4:48849513-48849532 None:intergenic 25.0%
!!! ATTTGAAGTTTTTGAACTTC+AGG + chr5_4:48849514-48849533 Msa0855520:intron 25.0%
! CAATTGCAATATCAACATAA+CGG + chr5_4:48849724-48849743 Msa0855520:intron 25.0%
! AATTGCAATATCAACATAAC+GGG + chr5_4:48849725-48849744 Msa0855520:intron 25.0%
! TATCAATTATACGCATATGA+GGG - chr5_4:48849825-48849844 None:intergenic 25.0%
! TTATCAATTATACGCATATG+AGG - chr5_4:48849826-48849845 None:intergenic 25.0%
! ACTTATTTAATATCTAACCC+GGG - chr5_4:48850255-48850274 None:intergenic 25.0%
!!! TACACTTTTTATTCTTGCAT+TGG - chr5_4:48850420-48850439 None:intergenic 25.0%
! AAGTAATAGTCCATGTTTAA+AGG - chr5_4:48850487-48850506 None:intergenic 25.0%
!! CTATTTCGGATTTTATAATC+CGG + chr5_4:48850582-48850601 Msa0855520:intron 25.0%
! GATTATACATAAGAATTGTC+CGG - chr5_4:48850604-48850623 None:intergenic 25.0%
!!! GAATTTTTTCTGATTTTCTG+GGG + chr5_4:48850906-48850925 Msa0855520:intron 25.0%
!! TTTAACAAAAATCGGGTTTT+CGG - chr5_4:48850960-48850979 None:intergenic 25.0%
! TCAAATGACCTATAATTACA+GGG - chr5_4:48852163-48852182 None:intergenic 25.0%
! TTCAAATGACCTATAATTAC+AGG - chr5_4:48852162-48852181 None:intergenic 25.0%
!! TCAAGTGATTAACTTTTACA+GGG - chr5_4:48852103-48852122 None:intergenic 25.0%
!! TTCAAGTGATTAACTTTTAC+AGG - chr5_4:48852102-48852121 None:intergenic 25.0%
! TCAAGGAAAAAAAATAAGTC+AGG + chr5_4:48852003-48852022 Msa0855520:intron 25.0%
! CAAGGAAAAAAAATAAGTCA+GGG + chr5_4:48852004-48852023 Msa0855520:intron 25.0%
! AAGGAAAAAAAATAAGTCAG+GGG + chr5_4:48852005-48852024 Msa0855520:intron 25.0%
!! TTCAAGTGATTAACTTTTAC+AGG + chr5_4:48852102-48852121 Msa0855520:intron 25.0%
!! TCAAGTGATTAACTTTTACA+GGG + chr5_4:48852103-48852122 Msa0855520:intron 25.0%
! TTCAAATGACCTATAATTAC+AGG + chr5_4:48852162-48852181 Msa0855520:intron 25.0%
! TCAAATGACCTATAATTACA+GGG + chr5_4:48852163-48852182 Msa0855520:intron 25.0%
! AAAATCACAATAATGATAGC+GGG + chr5_4:48852260-48852279 Msa0855520:intron 25.0%
! AATGATACATAAAAATCACG+GGG - chr5_4:48852298-48852317 None:intergenic 25.0%
! CAATGATACATAAAAATCAC+GGG - chr5_4:48852299-48852318 None:intergenic 25.0%
! CTGTATCTTCTAAATAATAG+TGG - chr5_4:48852440-48852459 None:intergenic 25.0%
! AAAAGAATATTATCCATTGC+GGG - chr5_4:48852620-48852639 None:intergenic 25.0%
!! TATGATTTGCACAACAATAT+TGG + chr5_4:48853103-48853122 Msa0855520:intron 25.0%
!! TTTTATAGCCATTCTTTGAA+AGG + chr5_4:48853169-48853188 Msa0855520:intron 25.0%
! CTTATTTGTGATCATTCAAT+TGG + chr5_4:48853402-48853421 Msa0855520:intron 25.0%
! ACCAATACTTAAAAAAACAC+GGG - chr5_4:48853548-48853567 None:intergenic 25.0%
!!! CCTAATTTCTTTTAAAGAGA+TGG - chr5_4:48853778-48853797 None:intergenic 25.0%
!! CCATCTCTTTAAAAGAAATT+AGG + chr5_4:48853775-48853794 Msa0855520:intron 25.0%
! TGACTACTCAAAAAATTAAG+GGG + chr5_4:48854226-48854245 Msa0855520:intron 25.0%
! GTTGAAACAAAAGACATAAA+AGG + chr5_4:48854411-48854430 Msa0855520:intron 25.0%
! GACGTGTTAAAAAATTAAGA+AGG + chr5_4:48854447-48854466 Msa0855520:intron 25.0%
! CGTGTTAAAAAATTAAGAAG+GGG + chr5_4:48854449-48854468 Msa0855520:intron 25.0%
! TTCCTAATAGCGATAATAAT+AGG + chr5_4:48854980-48854999 Msa0855520:intron 25.0%
! TTCCTATTATTATCGCTATT+AGG - chr5_4:48854985-48855004 None:intergenic 25.0%
! ATAGGAATATGAAAAAACAC+TGG + chr5_4:48854998-48855017 Msa0855520:intron 25.0%
! GTTAATGCATGAAAATGAAA+AGG + chr5_4:48855020-48855039 Msa0855520:intron 25.0%
!!! AGCTTTTGAGTAAATATGAT+GGG - chr5_4:48855713-48855732 None:intergenic 25.0%
!!! AAGCTTTTGAGTAAATATGA+TGG - chr5_4:48855714-48855733 None:intergenic 25.0%
! AAAGTTTAGATATGCTTTCT+GGG - chr5_4:48855919-48855938 None:intergenic 25.0%
! AAAAGTTTAGATATGCTTTC+TGG - chr5_4:48855920-48855939 None:intergenic 25.0%
! ATCATTCAAATGTTATAAGG+TGG - chr5_4:48855960-48855979 None:intergenic 25.0%
!! TTTTATTCCTCTATTGTTTG+AGG + chr5_4:48856081-48856100 Msa0855520:CDS 25.0%
!! TTCAAGTCATTTAAGCTTTT+TGG - chr5_4:48856337-48856356 None:intergenic 25.0%
!!! ATTTTTTACCCCATTAACAT+AGG - chr5_4:48856386-48856405 None:intergenic 25.0%
!! GGGGTAAAAAATATATTTTC+TGG + chr5_4:48856394-48856413 Msa0855520:CDS 25.0%
! GTAATTCTTACATTGAGATT+AGG - chr5_4:48856604-48856623 None:intergenic 25.0%
! ATTTCTCAATGCATACTTTA+TGG + chr5_4:48856675-48856694 Msa0855520:intron 25.0%
! TCCTAGTAAACAATATTTCT+TGG + chr5_4:48857354-48857373 Msa0855520:CDS 25.0%
! TCCAAGAAATATTGTTTACT+AGG - chr5_4:48857358-48857377 None:intergenic 25.0%
!! ATCCATAACAAAATCCTTTT+TGG - chr5_4:48857386-48857405 None:intergenic 25.0%
! ATTTGTAGCAAAATCATCAA+GGG - chr5_4:48857740-48857759 None:intergenic 25.0%
! TATTTGTAGCAAAATCATCA+AGG - chr5_4:48857741-48857760 None:intergenic 25.0%
! TACAAGGAAAATATAAGGTA+TGG + chr5_4:48857787-48857806 Msa0855520:CDS 25.0%
!! ATCAACAGTTTGCTTAAATT+TGG - chr5_4:48858058-48858077 None:intergenic 25.0%
! TCAATCACTAAAAATTTCAC+TGG - chr5_4:48858291-48858310 None:intergenic 25.0%
! TTTAATCATCTCAGAAATGA+CGG - chr5_4:48858817-48858836 None:intergenic 25.0%
!! AGAAAAAACAACCTTTTCTT+AGG - chr5_4:48858842-48858861 None:intergenic 25.0%
!!! ACTTTACTTTGTTATGCTTT+TGG + chr5_4:48858935-48858954 Msa0855520:intron 25.0%
! TCATAAACTTGAGCATTATA+TGG - chr5_4:48859008-48859027 None:intergenic 25.0%
! AGATATTGTCTTTGGATATT+AGG + chr5_4:48859300-48859319 Msa0855520:intron 25.0%
!! GGAGTAATTATGTTTGAAAT+AGG - chr5_4:48859850-48859869 None:intergenic 25.0%
TTCAAGCTAACTGAACTTTA+AGG + chr5_4:48848300-48848319 Msa0855520:intron 30.0%
!! ACTGAACTTTAAGGTATGTT+TGG + chr5_4:48848309-48848328 Msa0855520:intron 30.0%
!! ACTTTAAGGTATGTTTGGAT+TGG + chr5_4:48848314-48848333 Msa0855520:intron 30.0%
GTGTATAAAATGAAATGGAG+TGG + chr5_4:48848336-48848355 Msa0855520:intron 30.0%
CAAAACTAATCAAAACCACT+CGG + chr5_4:48848755-48848774 Msa0855520:intron 30.0%
! AGCATTGAAAAGTAGGAATA+TGG + chr5_4:48848811-48848830 Msa0855520:intron 30.0%
GCATTGAAAAGTAGGAATAT+GGG + chr5_4:48848812-48848831 Msa0855520:intron 30.0%
GAAATAGAGAGAATGACAAA+TGG - chr5_4:48848864-48848883 None:intergenic 30.0%
! TTCTCTCTATTTCTTCCATT+TGG + chr5_4:48848871-48848890 Msa0855520:intron 30.0%
TAGACACATAAAACAGATAG+TGG - chr5_4:48848955-48848974 None:intergenic 30.0%
!!! TTTTCCAACCCTATTTTTGT+GGG - chr5_4:48849031-48849050 None:intergenic 30.0%
!!! TTTTTCCAACCCTATTTTTG+TGG - chr5_4:48849032-48849051 None:intergenic 30.0%
!! AAAAGCAACCATTGATTTCT+AGG + chr5_4:48849048-48849067 Msa0855520:intron 30.0%
CGTTATGTTGATATTGCAAT+TGG - chr5_4:48849726-48849745 None:intergenic 30.0%
ATCAATTATACGCATATGAG+GGG - chr5_4:48849824-48849843 None:intergenic 30.0%
AAAAATATTGCGAATCAACG+TGG + chr5_4:48849911-48849930 Msa0855520:intron 30.0%
! TATATACTAGTTTAGAGACC+CGG + chr5_4:48850224-48850243 Msa0855520:intron 30.0%
CAATAATGAATTAGTCCAAG+TGG + chr5_4:48850447-48850466 Msa0855520:intron 30.0%
CGGATTCATGTTTACTATTT+CGG + chr5_4:48850568-48850587 Msa0855520:intron 30.0%
! GATGGAATTTTGGATTTTGA+GGG + chr5_4:48850839-48850858 Msa0855520:intron 30.0%
! ATGGAATTTTGGATTTTGAG+GGG + chr5_4:48850840-48850859 Msa0855520:intron 30.0%
! TTAACAAAAATCGGGTTTTC+GGG - chr5_4:48850959-48850978 None:intergenic 30.0%
! GCTGGGAAAAAAATTTTTGA+AGG - chr5_4:48851835-48851854 None:intergenic 30.0%
AAAAATTTCGGGAAAAAGCT+GGG - chr5_4:48851852-48851871 None:intergenic 30.0%
AAAAAATTTCGGGAAAAAGC+TGG - chr5_4:48851853-48851872 None:intergenic 30.0%
GCAAATTAAGAAAATGGCAT+GGG - chr5_4:48852045-48852064 None:intergenic 30.0%
AGCAAATTAAGAAAATGGCA+TGG - chr5_4:48852046-48852065 None:intergenic 30.0%
ACGTCAGCAAATTAAGAAAA+TGG - chr5_4:48852051-48852070 None:intergenic 30.0%
!!! ATTTTCTTAATTTGCTGACG+TGG + chr5_4:48852050-48852069 Msa0855520:intron 30.0%
! AAATCACAATAATGATAGCG+GGG + chr5_4:48852261-48852280 Msa0855520:intron 30.0%
TTAGAAGATACAGTTAGTCA+AGG + chr5_4:48852447-48852466 Msa0855520:intron 30.0%
AAAGAATATTATCCATTGCG+GGG - chr5_4:48852619-48852638 None:intergenic 30.0%
! TTTTCCCGATTTCAAAATAC+GGG - chr5_4:48852932-48852951 None:intergenic 30.0%
! GTTTTCCCGATTTCAAAATA+CGG - chr5_4:48852933-48852952 None:intergenic 30.0%
AAAAGCAGTCAAATTGAGTT+TGG + chr5_4:48852974-48852993 Msa0855520:intron 30.0%
TTATGTATTGTATCTAGGCA+TGG - chr5_4:48853034-48853053 None:intergenic 30.0%
TTGTTGTGCAAATCATACAT+GGG - chr5_4:48853100-48853119 None:intergenic 30.0%
ATTGTTGTGCAAATCATACA+TGG - chr5_4:48853101-48853120 None:intergenic 30.0%
!!! TCCCGTGTTTTTTTAAGTAT+TGG + chr5_4:48853544-48853563 Msa0855520:intron 30.0%
AAAAGAGAAAATATAGGAGG+AGG + chr5_4:48854169-48854188 Msa0855520:intron 30.0%
! AAGGGGTAAGATTGTATTTT+TGG + chr5_4:48854243-48854262 Msa0855520:intron 30.0%
AAAAGAGAAAAAATAGAGGG+AGG + chr5_4:48854389-48854408 Msa0855520:intron 30.0%
! AAGGGGTAAGATTGTATTTT+TGG + chr5_4:48854243-48854262 Msa0855520:intron 30.0%
ATTGCATTGGAAACTGAAAA+TGG - chr5_4:48854677-48854696 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr5_4:48854862-48854881 None:intergenic 30.0%
! TCTTTTCATGTGTACTTGAA+AGG + chr5_4:48855194-48855213 Msa0855520:intron 30.0%
AAACAGTTGAAGTATATGTC+CGG - chr5_4:48855225-48855244 None:intergenic 30.0%
AAATGGAACCACAAATGTTA+AGG - chr5_4:48855252-48855271 None:intergenic 30.0%
! ATAATGGAGAAGAGTAGAAA+TGG + chr5_4:48855338-48855357 Msa0855520:exon 30.0%
TGAAAATCTTTACGAAGACA+AGG + chr5_4:48855415-48855434 Msa0855520:CDS 30.0%
TCACATTGAAAAAGTGAACT+TGG + chr5_4:48855462-48855481 Msa0855520:intron 30.0%
GAACAAAACTAACAATGAAG+TGG - chr5_4:48855590-48855609 None:intergenic 30.0%
AAGCCTGAAAAAAGATTGAT+CGG - chr5_4:48855825-48855844 None:intergenic 30.0%
GAAATTATTGTCGCTCTATT+GGG - chr5_4:48855862-48855881 None:intergenic 30.0%
TGAAATTATTGTCGCTCTAT+TGG - chr5_4:48855863-48855882 None:intergenic 30.0%
ATAGAGCGACAATAATTTCA+AGG + chr5_4:48855863-48855882 Msa0855520:intron 30.0%
! TGTGAAAATTGTTTTCTCTC+AGG + chr5_4:48856009-48856028 Msa0855520:intron 30.0%
GAATCTGATAGAGATGAAAA+TGG + chr5_4:48856259-48856278 Msa0855520:CDS 30.0%
TTAACATAGGCAATATGGTA+GGG - chr5_4:48856373-48856392 None:intergenic 30.0%
ATTAACATAGGCAATATGGT+AGG - chr5_4:48856374-48856393 None:intergenic 30.0%
TACCATATTGCCTATGTTAA+TGG + chr5_4:48856373-48856392 Msa0855520:CDS 30.0%
ACCATATTGCCTATGTTAAT+GGG + chr5_4:48856374-48856393 Msa0855520:CDS 30.0%
TGACAACAAATGTTCGTATT+TGG + chr5_4:48856518-48856537 Msa0855520:CDS 30.0%
CTGAAATACAAGCATTATAC+AGG - chr5_4:48856843-48856862 None:intergenic 30.0%
ATAATGCTTGTATTTCAGAG+TGG + chr5_4:48856845-48856864 Msa0855520:CDS 30.0%
ATGCTAATACCAAACTGATA+TGG + chr5_4:48857005-48857024 Msa0855520:CDS 30.0%
TGCTAATACCAAACTGATAT+GGG + chr5_4:48857006-48857025 Msa0855520:CDS 30.0%
! CAAGTTGAAATCAAGAACAT+TGG + chr5_4:48857084-48857103 Msa0855520:CDS 30.0%
! TTAAGTGACATTGTGCTATT+TGG + chr5_4:48857196-48857215 Msa0855520:CDS 30.0%
! GTCCAAAAAGGATTTTGTTA+TGG + chr5_4:48857381-48857400 Msa0855520:CDS 30.0%
TCATGCATACAAGATAAGTA+AGG + chr5_4:48857432-48857451 Msa0855520:CDS 30.0%
CATGCATACAAGATAAGTAA+GGG + chr5_4:48857433-48857452 Msa0855520:CDS 30.0%
ATGCATACAAGATAAGTAAG+GGG + chr5_4:48857434-48857453 Msa0855520:CDS 30.0%
AATCACTAAGCTATACCAAT+TGG + chr5_4:48857510-48857529 Msa0855520:CDS 30.0%
! TTTTGTCATTCTCAACCAAT+TGG - chr5_4:48857528-48857547 None:intergenic 30.0%
! TTGAGAAAATTTGCTCTCTA+GGG - chr5_4:48857702-48857721 None:intergenic 30.0%
! TTTGAGAAAATTTGCTCTCT+AGG - chr5_4:48857703-48857722 None:intergenic 30.0%
! AGAGCAAATTTTCTCAAAGA+TGG + chr5_4:48857705-48857724 Msa0855520:CDS 30.0%
! GAGCAAATTTTCTCAAAGAT+GGG + chr5_4:48857706-48857725 Msa0855520:CDS 30.0%
GTGCATACAAGGAAAATATA+AGG + chr5_4:48857782-48857801 Msa0855520:CDS 30.0%
!! TGATGATTCTTTGACTTTTG+AGG + chr5_4:48857816-48857835 Msa0855520:CDS 30.0%
!! GATGATTCTTTGACTTTTGA+GGG + chr5_4:48857817-48857836 Msa0855520:CDS 30.0%
!! AATGAAAGATTTTGGCATGT+GGG - chr5_4:48857971-48857990 None:intergenic 30.0%
!! AAATGAAAGATTTTGGCATG+TGG - chr5_4:48857972-48857991 None:intergenic 30.0%
TCATTTCTTTCCAAACTTGA+TGG - chr5_4:48858117-48858136 None:intergenic 30.0%
TGATGTCTCACTTTAAATTC+AGG - chr5_4:48858183-48858202 None:intergenic 30.0%
! ATTTAAAGTGAGACATCAAG+TGG + chr5_4:48858185-48858204 Msa0855520:CDS 30.0%
CTTCAACATTGCATTCTTAT+AGG + chr5_4:48858366-48858385 Msa0855520:CDS 30.0%
TATAGTAAGAGCTTTCTTGA+AGG + chr5_4:48858699-48858718 Msa0855520:CDS 30.0%
TATTAATATATCCAAGGGTG+AGG + chr5_4:48858746-48858765 Msa0855520:CDS 30.0%
ACAAAGAAGAAAGTTAGCAT+TGG + chr5_4:48858972-48858991 Msa0855520:CDS 30.0%
ATATCTACTGTGAGATCAAA+TGG + chr5_4:48859134-48859153 Msa0855520:CDS 30.0%
TCAAATGGAAGTGGTAATAT+CGG + chr5_4:48859149-48859168 Msa0855520:CDS 30.0%
TGTATTTGCAGATTCAAAGT+TGG + chr5_4:48859251-48859270 Msa0855520:intron 30.0%
! TTTTGTGCAGATATTGTCTT+TGG + chr5_4:48859292-48859311 Msa0855520:intron 30.0%
!! TGTAGTTTTTGATTACCTTG+AGG - chr5_4:48859537-48859556 None:intergenic 30.0%
TCCATCTAAGTACTTTGATT+TGG + chr5_4:48859617-48859636 Msa0855520:intron 30.0%
! CCATCTAAGTACTTTGATTT+GGG + chr5_4:48859618-48859637 Msa0855520:intron 30.0%
CATGATATTGTCAATCACAA+CGG - chr5_4:48859752-48859771 None:intergenic 30.0%
CTATTTACTATGACAAAGTG+TGG + chr5_4:48859901-48859920 Msa0855520:three_prime_UTR 30.0%
CTAACAATTGTTCTCCTTTG+AGG + chr5_4:48848080-48848099 Msa0855520:five_prime_UTR 35.0%
TCAATTTCAGACTTCCTCAA+AGG - chr5_4:48848097-48848116 None:intergenic 35.0%
AATACTACGCTTTGTGACAA+AGG + chr5_4:48848116-48848135 Msa0855520:five_prime_UTR 35.0%
TGTGTCTTTATCTCTCCAAA+TGG - chr5_4:48848889-48848908 None:intergenic 35.0%
GATCCTTACCCACAAAAATA+GGG + chr5_4:48849020-48849039 Msa0855520:intron 35.0%
TTCTTGAATATGTCTAACCC+GGG - chr5_4:48849132-48849151 None:intergenic 35.0%
CTTCTTGAATATGTCTAACC+CGG - chr5_4:48849133-48849152 None:intergenic 35.0%
! AGTCCAAGTGGTAATAGTTT+TGG + chr5_4:48850459-48850478 Msa0855520:intron 35.0%
! GTCCAAGTGGTAATAGTTTT+GGG + chr5_4:48850460-48850479 Msa0855520:intron 35.0%
!!! AGTTTTGGGTCCTTTAAACA+TGG + chr5_4:48850474-48850493 Msa0855520:intron 35.0%
! TTTAGAAATTTTACAGGGCG+CGG - chr5_4:48850530-48850549 None:intergenic 35.0%
TGAAAAATGGGTCTAAACGA+TGG + chr5_4:48850821-48850840 Msa0855520:intron 35.0%
! CGATGGAATTTTGGATTTTG+AGG + chr5_4:48850838-48850857 Msa0855520:intron 35.0%
GACGCATAAATCACGATTTA+AGG - chr5_4:48851506-48851525 None:intergenic 35.0%
! CTTTTCGTCCCTGTAATTAT+AGG + chr5_4:48851639-48851658 Msa0855520:intron 35.0%
! AACTTTTACAGGGACGAAAT+GGG - chr5_4:48852113-48852132 None:intergenic 35.0%
! TAACTTTTACAGGGACGAAA+TGG - chr5_4:48852112-48852131 None:intergenic 35.0%
!!! ATTTTGGTAATTTGCTGACG+TGG - chr5_4:48851763-48851782 None:intergenic 35.0%
ACGTCAGCAAATTACCAAAA+TGG + chr5_4:48851762-48851781 Msa0855520:intron 35.0%
AGCAAATTACCAAAATGGCA+TGG + chr5_4:48851767-48851786 Msa0855520:intron 35.0%
GCAAATTACCAAAATGGCAT+GGG + chr5_4:48851768-48851787 Msa0855520:intron 35.0%
! TAACTTTTACAGGGACGAAA+TGG + chr5_4:48852112-48852131 Msa0855520:intron 35.0%
! AACTTTTACAGGGACGAAAT+GGG + chr5_4:48852113-48852132 Msa0855520:intron 35.0%
! CTTTTCGTCCCTGTAATTAT+AGG - chr5_4:48851639-48851658 None:intergenic 35.0%
ATACAGTTAGTCAAGGCAAT+GGG + chr5_4:48852454-48852473 Msa0855520:intron 35.0%
TTCTTATCCCCATTGGATAT+GGG - chr5_4:48852548-48852567 None:intergenic 35.0%
TTTCTTATCCCCATTGGATA+TGG - chr5_4:48852549-48852568 None:intergenic 35.0%
ATTCGATTTCTTATCCCCAT+TGG - chr5_4:48852555-48852574 None:intergenic 35.0%
TGTGTGACTGAAATGAGTTA+TGG + chr5_4:48852794-48852813 Msa0855520:intron 35.0%
TTCTACATTCAGGACAAGTT+TGG + chr5_4:48852858-48852877 Msa0855520:intron 35.0%
TCTACATTCAGGACAAGTTT+GGG + chr5_4:48852859-48852878 Msa0855520:intron 35.0%
CAGTCAAATTGAGTTTGGTT+CGG + chr5_4:48852979-48852998 Msa0855520:intron 35.0%
GTTGAAGCAAAAGACACAAA+AGG + chr5_4:48854191-48854210 Msa0855520:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr5_4:48854624-48854643 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr5_4:48854725-48854744 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr5_4:48854729-48854748 None:intergenic 35.0%
!!! GACACTCATTTTGAAACGAA+GGG + chr5_4:48854867-48854886 Msa0855520:intron 35.0%
GGACATATACTTCAACTGTT+TGG + chr5_4:48855224-48855243 Msa0855520:intron 35.0%
GTTTGGTACCTTAACATTTG+TGG + chr5_4:48855241-48855260 Msa0855520:intron 35.0%
AGAAGAGTAGAAATGGAAGT+GGG + chr5_4:48855345-48855364 Msa0855520:CDS 35.0%
TCCTGATATGTTTGTGTGAT+CGG - chr5_4:48855761-48855780 None:intergenic 35.0%
!!! CTTCCGATCAATCTTTTTTC+AGG + chr5_4:48855819-48855838 Msa0855520:intron 35.0%
GATTTATCTTCAAGCTTGTC+TGG + chr5_4:48856115-48856134 Msa0855520:CDS 35.0%
TTCAGTTCCATCATACCATA+TGG + chr5_4:48856221-48856240 Msa0855520:CDS 35.0%
GAAAATTATGAACCTGCATC+AGG + chr5_4:48856283-48856302 Msa0855520:CDS 35.0%
CCATATTGCCTATGTTAATG+GGG + chr5_4:48856375-48856394 Msa0855520:CDS 35.0%
ATCTTCCAAATGCATGAAGA+TGG + chr5_4:48856432-48856451 Msa0855520:CDS 35.0%
AACATCCATCTTCATGCATT+TGG - chr5_4:48856440-48856459 None:intergenic 35.0%
GCTAATACCAAACTGATATG+GGG + chr5_4:48857007-48857026 Msa0855520:CDS 35.0%
TCACTTGACGATGATACATA+TGG + chr5_4:48857172-48857191 Msa0855520:CDS 35.0%
ATGAAAGTGGAAAGTTATCC+AGG + chr5_4:48857232-48857251 Msa0855520:CDS 35.0%
AGAAAGATATCTTCAAGACC+TGG - chr5_4:48857253-48857272 None:intergenic 35.0%
TTTCTTGGAGATGTCCAAAA+AGG + chr5_4:48857369-48857388 Msa0855520:CDS 35.0%
AAGATAAGTAAGGGGAACTA+TGG + chr5_4:48857442-48857461 Msa0855520:CDS 35.0%
GTTTGAGGATTATGTTCAGA+AGG + chr5_4:48857477-48857496 Msa0855520:CDS 35.0%
ATCTGCATATAGTGCATACA+AGG + chr5_4:48857771-48857790 Msa0855520:CDS 35.0%
! ATACCAAAGTATCATGACCA+TGG + chr5_4:48857876-48857895 Msa0855520:CDS 35.0%
CAATTTGTGAAGCAGAGATT+TGG + chr5_4:48857901-48857920 Msa0855520:CDS 35.0%
!! CTTAAATTTGGCTTGACTCA+AGG - chr5_4:48858046-48858065 None:intergenic 35.0%
TGGAAAGAAATGATTGCCTT+CGG + chr5_4:48858124-48858143 Msa0855520:CDS 35.0%
AAAGGAAACTTAGTATCCGA+AGG - chr5_4:48858143-48858162 None:intergenic 35.0%
! ATCAAGTGGAAAAGTTTTGC+TGG + chr5_4:48858199-48858218 Msa0855520:CDS 35.0%
! ATTGCGGACAATTGTTGATT+TGG + chr5_4:48858525-48858544 Msa0855520:intron 35.0%
! AAGAAGTATGTTTGAGAGAC+TGG + chr5_4:48858548-48858567 Msa0855520:intron 35.0%
! AGCTTATTGATGGATGCATT+CGG - chr5_4:48858614-48858633 None:intergenic 35.0%
CAAGGAAACAAGCTTATTGA+TGG - chr5_4:48858624-48858643 None:intergenic 35.0%
TCATCATAGAACTCTTTGCA+AGG - chr5_4:48858642-48858661 None:intergenic 35.0%
! TGCTTTTGGTAGAGTTTATG+AGG + chr5_4:48858949-48858968 Msa0855520:intron 35.0%
TGCTCAAGTTTATGAAATCC+AGG + chr5_4:48859013-48859032 Msa0855520:CDS 35.0%
AGAAAGTTAAGCAAGACACT+TGG + chr5_4:48859036-48859055 Msa0855520:CDS 35.0%
GAAAGTTAAGCAAGACACTT+GGG + chr5_4:48859037-48859056 Msa0855520:CDS 35.0%
GTTAATGTTCGTTCTGTTGA+TGG + chr5_4:48859080-48859099 Msa0855520:CDS 35.0%
AGCTAATGTTGCAATGACAA+GGG + chr5_4:48859193-48859212 Msa0855520:CDS 35.0%
ATTGATGCTATACTTCCTCA+AGG + chr5_4:48859519-48859538 Msa0855520:CDS 35.0%
! CCCAAATCAAAGTACTTAGA+TGG - chr5_4:48859621-48859640 None:intergenic 35.0%
!!! TTTGCAACATTTTTTGTGGC+AGG + chr5_4:48859645-48859664 Msa0855520:intron 35.0%
TGATTACTCCTAACAAGGTG+AGG + chr5_4:48848778-48848797 Msa0855520:intron 40.0%
GATTACTCCTAACAAGGTGA+GGG + chr5_4:48848779-48848798 Msa0855520:intron 40.0%
ATATTCTCCCTCACCTTGTT+AGG - chr5_4:48848789-48848808 None:intergenic 40.0%
AGAGAGAATGACAAATGGAG+AGG - chr5_4:48848859-48848878 None:intergenic 40.0%
GGATCCTTACCCACAAAAAT+AGG + chr5_4:48849019-48849038 Msa0855520:intron 40.0%
!!! CAACCCTATTTTTGTGGGTA+AGG - chr5_4:48849026-48849045 None:intergenic 40.0%
CTTACCCACAAAAATAGGGT+TGG + chr5_4:48849024-48849043 Msa0855520:intron 40.0%
ATAAACGTGGAAGTGACATG+TGG + chr5_4:48850179-48850198 Msa0855520:intron 40.0%
GACCCAAAACTATTACCACT+TGG - chr5_4:48850465-48850484 None:intergenic 40.0%
! TTAGAAATTTTACAGGGCGC+GGG - chr5_4:48850529-48850548 None:intergenic 40.0%
TGAAATGTGAGAGAGTCTGA+TGG - chr5_4:48850629-48850648 None:intergenic 40.0%
! GGGTCTAAACGATGGAATTT+TGG + chr5_4:48850829-48850848 Msa0855520:intron 40.0%
!! GAATTTTGGATTTTGAGGGG+CGG + chr5_4:48850843-48850862 Msa0855520:intron 40.0%
!! CTGATTTTCTGGGGATGTTT+CGG + chr5_4:48850915-48850934 Msa0855520:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr5_4:48851027-48851046 Msa0855520:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr5_4:48851027-48851046 Msa0855520:intron 40.0%
ATGAATGTGGAAGTGACATG+TGG + chr5_4:48851027-48851046 Msa0855520:intron 40.0%
TGACGTGGCAGTGATTAAAA+GGG - chr5_4:48852065-48852084 None:intergenic 40.0%
TGACGTGGCAGTGATTAAAA+GGG + chr5_4:48852065-48852084 Msa0855520:intron 40.0%
GATACAGTTAGTCAAGGCAA+TGG + chr5_4:48852453-48852472 Msa0855520:intron 40.0%
TACAGTTAGTCAAGGCAATG+GGG + chr5_4:48852455-48852474 Msa0855520:intron 40.0%
AATCTTATCTCCGTCTCCAA+CGG + chr5_4:48852572-48852591 Msa0855520:intron 40.0%
TAGTCGATAGATCATGGCTA+TGG + chr5_4:48852711-48852730 Msa0855520:intron 40.0%
ATAGATCATGGCTATGGTGA+TGG + chr5_4:48852717-48852736 Msa0855520:intron 40.0%
ACAAGTTTGGGTATGAGTTC+AGG + chr5_4:48852871-48852890 Msa0855520:intron 40.0%
CAAGTTTGGGTATGAGTTCA+GGG + chr5_4:48852872-48852891 Msa0855520:intron 40.0%
CGATTTCAAAATACGGGTAC+GGG - chr5_4:48852926-48852945 None:intergenic 40.0%
CCGATTTCAAAATACGGGTA+CGG - chr5_4:48852927-48852946 None:intergenic 40.0%
!!! CCGTACCCGTATTTTGAAAT+CGG + chr5_4:48852924-48852943 Msa0855520:intron 40.0%
!!! CGTACCCGTATTTTGAAATC+GGG + chr5_4:48852925-48852944 Msa0855520:intron 40.0%
AAACTCAAACCGAGTCAAAG+TGG + chr5_4:48852949-48852968 Msa0855520:intron 40.0%
AACTCAAACCGAGTCAAAGT+GGG + chr5_4:48852950-48852969 Msa0855520:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5_4:48854620-48854639 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr5_4:48854726-48854745 None:intergenic 40.0%
!!! CGACACTCATTTTGAAACGA+AGG + chr5_4:48854866-48854885 Msa0855520:intron 40.0%
!! TGAGAAGAGGGTACTTTCAT+AGG - chr5_4:48855112-48855131 None:intergenic 40.0%
GAGAAGAGTAGAAATGGAAG+TGG + chr5_4:48855344-48855363 Msa0855520:CDS 40.0%
TTCATTGAGAACATCCTCGA+GGG - chr5_4:48855399-48855418 None:intergenic 40.0%
TTTCATTGAGAACATCCTCG+AGG - chr5_4:48855400-48855419 None:intergenic 40.0%
ACCGATCACACAAACATATC+AGG + chr5_4:48855757-48855776 Msa0855520:intron 40.0%
!!! CAGATCGTTTTTTTCCCCAT+CGG + chr5_4:48855789-48855808 Msa0855520:intron 40.0%
ATCGGAAGATAGTTTCCGAT+GGG - chr5_4:48855807-48855826 None:intergenic 40.0%
!!! TTTTTCAGGCTTTAGCAACC+TGG + chr5_4:48855833-48855852 Msa0855520:intron 40.0%
!! TTTTCAGGCTTTAGCAACCT+GGG + chr5_4:48855834-48855853 Msa0855520:intron 40.0%
!! GTTGCTGACTTAAATGTCTC+TGG - chr5_4:48856046-48856065 None:intergenic 40.0%
CGTGTTTCCTCAAACAATAG+AGG - chr5_4:48856091-48856110 None:intergenic 40.0%
GTTCCATCATACCATATGGT+TGG + chr5_4:48856225-48856244 Msa0855520:CDS 40.0%
TCTCCAACCATATGGTATGA+TGG - chr5_4:48856231-48856250 None:intergenic 40.0%
AGTTGTACTCTCCAACCATA+TGG - chr5_4:48856239-48856258 None:intergenic 40.0%
CCCCATTAACATAGGCAATA+TGG - chr5_4:48856378-48856397 None:intergenic 40.0%
AGCCTTGAACTCAAAGTCAA+AGG + chr5_4:48856543-48856562 Msa0855520:CDS 40.0%
GCCTTGAACTCAAAGTCAAA+GGG + chr5_4:48856544-48856563 Msa0855520:CDS 40.0%
! ACCCTTTGACTTTGAGTTCA+AGG - chr5_4:48856548-48856567 None:intergenic 40.0%
GAATGAATCCCAACAAGATG+CGG + chr5_4:48856949-48856968 Msa0855520:CDS 40.0%
TGCAACACTGCAGTATTAGT+TGG - chr5_4:48857118-48857137 None:intergenic 40.0%
TAATACTGCAGTGTTGCAAG+TGG + chr5_4:48857120-48857139 Msa0855520:CDS 40.0%
GGAACTATGGTCTGATTATG+AGG + chr5_4:48857455-48857474 Msa0855520:CDS 40.0%
TGGTCTGATTATGAGGTTTG+AGG + chr5_4:48857462-48857481 Msa0855520:CDS 40.0%
AGGATTATGTTCAGAAGGCA+CGG + chr5_4:48857482-48857501 Msa0855520:CDS 40.0%
! TTGCTTTGGACCATCAAGTT+TGG + chr5_4:48858104-48858123 Msa0855520:CDS 40.0%
!! GAAGCGAAATTGAGTTGGAA+AGG - chr5_4:48858161-48858180 None:intergenic 40.0%
TTCAGGAAGCGAAATTGAGT+TGG - chr5_4:48858166-48858185 None:intergenic 40.0%
AGAATGCAATGTTGAAGACC+CGG - chr5_4:48858363-48858382 None:intergenic 40.0%
TGTCTTGCTTAACTTTCTCC+TGG - chr5_4:48859034-48859053 None:intergenic 40.0%
ACTGTGAGATCAAATGGAAG+TGG + chr5_4:48859140-48859159 Msa0855520:CDS 40.0%
GAGCTAATGTTGCAATGACA+AGG + chr5_4:48859192-48859211 Msa0855520:CDS 40.0%
TGAATCTGCAAATACACACG+AGG - chr5_4:48859247-48859266 None:intergenic 40.0%
TAGCCAGTAGTGATTCTATC+TGG + chr5_4:48859337-48859356 Msa0855520:CDS 40.0%
TCTCCAGATAGAATCACTAC+TGG - chr5_4:48859343-48859362 None:intergenic 40.0%
CTGTTATCATAATGCTGACG+AGG + chr5_4:48859392-48859411 Msa0855520:CDS 40.0%
!!! ACATTTTTTGTGGCAGGTCA+AGG + chr5_4:48859651-48859670 Msa0855520:intron 40.0%
GATTCACCAGCTTCAAACTT+GGG - chr5_4:48859688-48859707 None:intergenic 40.0%
TGATTCACCAGCTTCAAACT+TGG - chr5_4:48859689-48859708 None:intergenic 40.0%
CTACGCTTTGTGACAAAGGT+TGG + chr5_4:48848120-48848139 Msa0855520:five_prime_UTR 45.0%
TGTTAGGAGTAATCACCGAG+TGG - chr5_4:48848773-48848792 None:intergenic 45.0%
CTCGGTGATTACTCCTAACA+AGG + chr5_4:48848773-48848792 Msa0855520:intron 45.0%
!! ATCAACATAACGGGTGCATC+TGG + chr5_4:48849734-48849753 Msa0855520:intron 45.0%
GAAACTCACGTGCACACTAT+CGG - chr5_4:48849800-48849819 None:intergenic 45.0%
CCATAGAAGGGACTTCTTAC+GGG - chr5_4:48850872-48850891 None:intergenic 45.0%
CCCATAGAAGGGACTTCTTA+CGG - chr5_4:48850873-48850892 None:intergenic 45.0%
CCGTAAGAAGTCCCTTCTAT+GGG + chr5_4:48850870-48850889 Msa0855520:intron 45.0%
GATTTAAGGAATAGCCCGTG+CGG - chr5_4:48851492-48851511 None:intergenic 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - chr5_4:48852132-48852151 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - chr5_4:48852131-48852150 None:intergenic 45.0%
! TTTTACAGGGACGAAATGGG+AGG - chr5_4:48852116-48852135 None:intergenic 45.0%
GACGTGGCAGTGATTAAAAG+GGG - chr5_4:48852066-48852085 None:intergenic 45.0%
CTGACGTGGCAGTGATTAAA+AGG - chr5_4:48852064-48852083 None:intergenic 45.0%
!! CGTCATTTCCCATGCCATTT+TGG - chr5_4:48852034-48852053 None:intergenic 45.0%
CTGACGTGGCAGTGATTAAA+AGG + chr5_4:48852064-48852083 Msa0855520:intron 45.0%
GACGTGGCAGTGATTAAAAG+GGG + chr5_4:48852066-48852085 Msa0855520:intron 45.0%
! TTTTACAGGGACGAAATGGG+AGG + chr5_4:48852116-48852135 Msa0855520:intron 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG + chr5_4:48852131-48852150 Msa0855520:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG + chr5_4:48852132-48852151 Msa0855520:intron 45.0%
AGTACCTGGTAGTAGGGTAT+GGG - chr5_4:48852511-48852530 None:intergenic 45.0%
AAGTACCTGGTAGTAGGGTA+TGG - chr5_4:48852512-48852531 None:intergenic 45.0%
ATTGGATATGGGTAGGGTAG+CGG - chr5_4:48852537-48852556 None:intergenic 45.0%
CTACCCTACCCATATCCAAT+GGG + chr5_4:48852537-48852556 Msa0855520:intron 45.0%
TACCCTACCCATATCCAATG+GGG + chr5_4:48852538-48852557 Msa0855520:intron 45.0%
ATCCCCATTGGATATGGGTA+GGG - chr5_4:48852543-48852562 None:intergenic 45.0%
TATCCCCATTGGATATGGGT+AGG - chr5_4:48852544-48852563 None:intergenic 45.0%
ATCTTATCTCCGTCTCCAAC+GGG + chr5_4:48852573-48852592 Msa0855520:intron 45.0%
TATTATCCATTGCGGGGATG+AGG - chr5_4:48852613-48852632 None:intergenic 45.0%
GCATTGCAACATTGTGTGTG+AGG - chr5_4:48852665-48852684 None:intergenic 45.0%
CGACGATAGTCGATAGATCA+TGG + chr5_4:48852705-48852724 Msa0855520:intron 45.0%
TTTGGGTATGAGTTCAGGGT+GGG + chr5_4:48852876-48852895 Msa0855520:intron 45.0%
! GGGATGAGTAACGGAGATAT+AGG - chr5_4:48852906-48852925 None:intergenic 45.0%
ACTCAAACCGAGTCAAAGTG+GGG + chr5_4:48852951-48852970 Msa0855520:intron 45.0%
! TGCTTTTCCCCACTTTGACT+CGG - chr5_4:48852961-48852980 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5_4:48854621-48854640 None:intergenic 45.0%
GAAAGTAGCGCATGAGAAGA+GGG - chr5_4:48855124-48855143 None:intergenic 45.0%
TGAAAGTAGCGCATGAGAAG+AGG - chr5_4:48855125-48855144 None:intergenic 45.0%
GTGTACTTGAAAGGTCGAAC+CGG + chr5_4:48855203-48855222 Msa0855520:intron 45.0%
TCGGAAGATAGTTTCCGATG+GGG - chr5_4:48855806-48855825 None:intergenic 45.0%
GATCGGAAGATAGTTTCCGA+TGG - chr5_4:48855808-48855827 None:intergenic 45.0%
GCAATAAGATCTCCTGATGC+AGG - chr5_4:48856298-48856317 None:intergenic 45.0%
GCTTGTAACCGCATCTTGTT+GGG - chr5_4:48856960-48856979 None:intergenic 45.0%
AGCTTGTAACCGCATCTTGT+TGG - chr5_4:48856961-48856980 None:intergenic 45.0%
GGTTACAAGCTGTGCTAGTA+TGG + chr5_4:48856970-48856989 Msa0855520:CDS 45.0%
!! TTTGTTTTTCCTGTCCCTGG+TGG - chr5_4:48857034-48857053 None:intergenic 45.0%
!!! GACTTTGTTTTTCCTGTCCC+TGG - chr5_4:48857037-48857056 None:intergenic 45.0%
TGCAGTATTAGTTGGAGCAC+AGG - chr5_4:48857110-48857129 None:intergenic 45.0%
TCATGCAGTGCTATGCTGAA+TGG + chr5_4:48857293-48857312 Msa0855520:CDS 45.0%
AAGCTTAATGCAGCTGCTTG+AGG + chr5_4:48857675-48857694 Msa0855520:CDS 45.0%
AGGGATATGTGAAGAGAGCA+AGG + chr5_4:48857836-48857855 Msa0855520:CDS 45.0%
GCTCCATGGTCATGATACTT+TGG - chr5_4:48857882-48857901 None:intergenic 45.0%
CTGCTTCACAAATTGCTCCA+TGG - chr5_4:48857896-48857915 None:intergenic 45.0%
! TTTTGGCATGTGGGTGCATA+AGG - chr5_4:48857962-48857981 None:intergenic 45.0%
!! GAAAGCATTCCTGCTTGCTT+TGG + chr5_4:48858090-48858109 Msa0855520:CDS 45.0%
GAATGCAATGTTGAAGACCC+GGG - chr5_4:48858362-48858381 None:intergenic 45.0%
! TTTGAGAGACTGGTGATGCT+AGG + chr5_4:48858558-48858577 Msa0855520:intron 45.0%
GCTTTCATCCTTGACAGCTA+GGG - chr5_4:48858679-48858698 None:intergenic 45.0%
AGCTTTCATCCTTGACAGCT+AGG - chr5_4:48858680-48858699 None:intergenic 45.0%
CGGACATAGCTTGAAGAACA+TGG + chr5_4:48858782-48858801 Msa0855520:CDS 45.0%
!! CGTTCTGTTGATGGTTTCCA+AGG + chr5_4:48859089-48859108 Msa0855520:CDS 45.0%
!! TCTGTTGATGGTTTCCAAGG+CGG + chr5_4:48859092-48859111 Msa0855520:CDS 45.0%
TAATATCTTCCTCACCGCCT+TGG - chr5_4:48859109-48859128 None:intergenic 45.0%
ATGTTGCAATGACAAGGGCT+AGG + chr5_4:48859198-48859217 Msa0855520:CDS 45.0%
!! AAATAAAAATTAATTAATGA+TGG + chr5_4:48848923-48848942 Msa0855520:intron 5.0%
!! TATTAATTTAATAACAAATA+TGG - chr5_4:48849377-48849396 None:intergenic 5.0%
!!! AAATGTTTTTTTTTATATTT+TGG - chr5_4:48849614-48849633 None:intergenic 5.0%
!! TTTAAAAACAATATTTAATT+TGG - chr5_4:48850131-48850150 None:intergenic 5.0%
!! AAATTAATAAAAATGAAAAA+TGG + chr5_4:48850808-48850827 Msa0855520:intron 5.0%
!! AATTAATAAAAATGAAAAAT+GGG + chr5_4:48850809-48850828 Msa0855520:intron 5.0%
!!! ATATTTTATTTAACAAAAAT+CGG - chr5_4:48850968-48850987 None:intergenic 5.0%
!! TTAAAAATCATAAAAAATTT+CGG - chr5_4:48851926-48851945 None:intergenic 5.0%
!! ATGAATAATATAAAAAATAT+AGG - chr5_4:48853584-48853603 None:intergenic 5.0%
CGCTTTGTGACAAAGGTTGG+AGG + chr5_4:48848123-48848142 Msa0855520:five_prime_UTR 50.0%
TGTATTTATCCGGCGTTGCC+CGG + chr5_4:48849111-48849130 Msa0855520:intron 50.0%
ATCAACGTGGAAGTGACACG+TGG + chr5_4:48849924-48849943 Msa0855520:intron 50.0%
CCCGTAAGAAGTCCCTTCTA+TGG + chr5_4:48850869-48850888 Msa0855520:intron 50.0%
AGTCCCTTCTATGGGAGTCA+TGG + chr5_4:48850878-48850897 Msa0855520:intron 50.0%
GGACCATGACTCCCATAGAA+GGG - chr5_4:48850884-48850903 None:intergenic 50.0%
AGGACCATGACTCCCATAGA+AGG - chr5_4:48850885-48850904 None:intergenic 50.0%
!! GGGTTTTCGGGCTACTTGAT+CGG - chr5_4:48850947-48850966 None:intergenic 50.0%
GCAGTGATTAAAAGGGGCGA+GGG - chr5_4:48852072-48852091 None:intergenic 50.0%
GCAGTGATTAAAAGGGGCGA+TGG + chr5_4:48852072-48852091 Msa0855520:intron 50.0%
GTACCTGGTAGTAGGGTATG+GGG - chr5_4:48852510-48852529 None:intergenic 50.0%
CGGGTAAGTACCTGGTAGTA+GGG - chr5_4:48852517-48852536 None:intergenic 50.0%
TTGGATATGGGTAGGGTAGC+GGG - chr5_4:48852536-48852555 None:intergenic 50.0%
GCTACCCTACCCATATCCAA+TGG + chr5_4:48852536-48852555 Msa0855520:intron 50.0%
ATACCTGAACCCGTTGGAGA+CGG - chr5_4:48852585-48852604 None:intergenic 50.0%
GTTTGGGTATGAGTTCAGGG+TGG + chr5_4:48852875-48852894 Msa0855520:intron 50.0%
TACGGGTACGGGATGAGTAA+CGG - chr5_4:48852915-48852934 None:intergenic 50.0%
GGATGAGTACTCGCAGGTAT+GGG + chr5_4:48853000-48853019 Msa0855520:intron 50.0%
TGTACTTTCTTGGACCCTCG+AGG + chr5_4:48855382-48855401 Msa0855520:CDS 50.0%
TGGTGGTCCCCATATCAGTT+TGG - chr5_4:48857017-48857036 None:intergenic 50.0%
AAACTGATATGGGGACCACC+AGG + chr5_4:48857016-48857035 Msa0855520:CDS 50.0%
AACTGATATGGGGACCACCA+GGG + chr5_4:48857017-48857036 Msa0855520:CDS 50.0%
CAGTGTTGCAAGTGGCAACA+AGG + chr5_4:48857128-48857147 Msa0855520:CDS 50.0%
! CTTGATGGTCCAAAGCAAGC+AGG - chr5_4:48858102-48858121 None:intergenic 50.0%
CATGATTCCGTTACAGCTCC+CGG + chr5_4:48858341-48858360 Msa0855520:CDS 50.0%
ATGATTCCGTTACAGCTCCC+GGG + chr5_4:48858342-48858361 Msa0855520:CDS 50.0%
TCCAGCGCTAGTCAAAAGCA+AGG + chr5_4:48858404-48858423 Msa0855520:CDS 50.0%
!! ACCTTGCTTTTGACTAGCGC+TGG - chr5_4:48858408-48858427 None:intergenic 50.0%
TCCAAGGGTGAGGAGACATT+TGG + chr5_4:48858756-48858775 Msa0855520:CDS 50.0%
ACCAAATGTCTCCTCACCCT+TGG - chr5_4:48858760-48858779 None:intergenic 50.0%
TGCTGACGAGGACATGAAAC+TGG + chr5_4:48859404-48859423 Msa0855520:CDS 50.0%
TGGCAGGTCAAGGAAACCTA+GGG + chr5_4:48859661-48859680 Msa0855520:intron 50.0%
TGCACAGTGTTCGTTCGCTA+AGG + chr5_4:48859711-48859730 Msa0855520:CDS 50.0%
GCACAGTGTTCGTTCGCTAA+GGG + chr5_4:48859712-48859731 Msa0855520:CDS 50.0%
GTATTTATCCGGCGTTGCCC+GGG + chr5_4:48849112-48849131 Msa0855520:intron 55.0%
ATATCTAACCCGGGCAACGC+CGG - chr5_4:48850246-48850265 None:intergenic 55.0%
! ATTTTACAGGGCGCGGGAGA+AGG - chr5_4:48850523-48850542 None:intergenic 55.0%
CAACAGACCCGTGCTAAGCA+CGG + chr5_4:48851456-48851475 Msa0855520:intron 55.0%
AACAGACCCGTGCTAAGCAC+GGG + chr5_4:48851457-48851476 Msa0855520:intron 55.0%
GGCAGTGATTAAAAGGGGCG+AGG - chr5_4:48852071-48852090 None:intergenic 55.0%
GTTAGTCAAGGCAATGGGGC+AGG + chr5_4:48852459-48852478 Msa0855520:intron 55.0%
TGGTAGTAGGGTATGGGGAC+GGG - chr5_4:48852505-48852524 None:intergenic 55.0%
CTGGTAGTAGGGTATGGGGA+CGG - chr5_4:48852506-48852525 None:intergenic 55.0%
GCGGGTAAGTACCTGGTAGT+AGG - chr5_4:48852518-48852537 None:intergenic 55.0%
!! TAGGGTAGCGGGTAAGTACC+TGG - chr5_4:48852525-48852544 None:intergenic 55.0%
ATCCATTGCGGGGATGAGGT+GGG - chr5_4:48852609-48852628 None:intergenic 55.0%
TATCCATTGCGGGGATGAGG+TGG - chr5_4:48852610-48852629 None:intergenic 55.0%
! TGGTTCGGATGAGTACTCGC+AGG + chr5_4:48852994-48853013 Msa0855520:intron 55.0%
CGGATGAGTACTCGCAGGTA+TGG + chr5_4:48852999-48853018 Msa0855520:intron 55.0%
! CGGGAGCTGTAACGGAATCA+TGG - chr5_4:48858343-48858362 None:intergenic 55.0%
TGAAGACCCGGGAGCTGTAA+CGG - chr5_4:48858351-48858370 None:intergenic 55.0%
TTCGGATGCCCTAGCTGTCA+AGG + chr5_4:48858668-48858687 Msa0855520:CDS 55.0%
GGTGAGGAGACATTTGGTCG+CGG + chr5_4:48858762-48858781 Msa0855520:CDS 55.0%
TGATGGTTTCCAAGGCGGTG+AGG + chr5_4:48859097-48859116 Msa0855520:CDS 55.0%
GTGGCAGGTCAAGGAAACCT+AGG + chr5_4:48859660-48859679 Msa0855520:intron 55.0%
GGCAGGTCAAGGAAACCTAG+GGG + chr5_4:48859662-48859681 Msa0855520:intron 55.0%
AGCTTCAAACTTGGGCCCCT+AGG - chr5_4:48859680-48859699 None:intergenic 55.0%
! TAGGGGCCCAAGTTTGAAGC+TGG + chr5_4:48859679-48859698 Msa0855520:CDS 55.0%
ATGTCTAACCCGGGCAACGC+CGG - chr5_4:48849123-48849142 None:intergenic 60.0%
TTTAGAGACCCGGCGTTGCC+CGG + chr5_4:48850234-48850253 Msa0855520:intron 60.0%
TATCTAACCCGGGCAACGCC+GGG - chr5_4:48850245-48850264 None:intergenic 60.0%
GCGGGAGAAGGCAATAGGGT+GGG - chr5_4:48850511-48850530 None:intergenic 60.0%
ACAGACCCGTGCTAAGCACG+GGG + chr5_4:48851458-48851477 Msa0855520:intron 60.0%
AGTCAAGGCAATGGGGCAGG+TGG + chr5_4:48852462-48852481 Msa0855520:intron 60.0%
GTCAAGGCAATGGGGCAGGT+GGG + chr5_4:48852463-48852482 Msa0855520:intron 60.0%
TCAAGGCAATGGGGCAGGTG+GGG + chr5_4:48852464-48852483 Msa0855520:intron 60.0%
GGTAGTAGGGTATGGGGACG+GGG - chr5_4:48852504-48852523 None:intergenic 60.0%
CGTCCCCATACCCTACTACC+AGG + chr5_4:48852504-48852523 Msa0855520:intron 60.0%
! TCTCCGTCTCCAACGGGTTC+AGG + chr5_4:48852579-48852598 Msa0855520:intron 60.0%
GTGGGGATACCTGAACCCGT+TGG - chr5_4:48852591-48852610 None:intergenic 60.0%
TCCATTGCGGGGATGAGGTG+GGG - chr5_4:48852608-48852627 None:intergenic 60.0%
ATATGGGGACCACCAGGGAC+AGG + chr5_4:48857022-48857041 Msa0855520:CDS 60.0%
TTAGAGACCCGGCGTTGCCC+GGG + chr5_4:48850235-48850254 Msa0855520:intron 65.0%
CGCGGGAGAAGGCAATAGGG+TGG - chr5_4:48850512-48850531 None:intergenic 65.0%
GGGCGCGGGAGAAGGCAATA+GGG - chr5_4:48850515-48850534 None:intergenic 65.0%
AGGGCGCGGGAGAAGGCAAT+AGG - chr5_4:48850516-48850535 None:intergenic 65.0%
GAATAGCCCGTGCGGAGCAC+GGG - chr5_4:48851484-48851503 None:intergenic 65.0%
GGAATAGCCCGTGCGGAGCA+CGG - chr5_4:48851485-48851504 None:intergenic 65.0%
GTAGGGTATGGGGACGGGGA+AGG - chr5_4:48852500-48852519 None:intergenic 65.0%
TCCCCACCTCATCCCCGCAA+TGG + chr5_4:48852604-48852623 Msa0855520:intron 65.0%
TGTCGCTCTATTGGGCGCCC+AGG - chr5_4:48855854-48855873 None:intergenic 65.0%
ACGGGCCCCGTGCTTAGCAC+GGG - chr5_4:48851466-48851485 None:intergenic 70.0%
CACGGGCCCCGTGCTTAGCA+CGG - chr5_4:48851467-48851486 None:intergenic 70.0%
! CACGGGGCCCGTGCTCCGCA+CGG + chr5_4:48851474-48851493 Msa0855520:intron 80.0%
! ACGGGGCCCGTGCTCCGCAC+GGG + chr5_4:48851475-48851494 Msa0855520:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 48848029 48859975 48848029 ID=Msa0855520;Name=Msa0855520
chr5_4 mRNA 48848029 48859975 48848029 ID=Msa0855520-mRNA-1;Parent=Msa0855520;Name=Msa0855520-mRNA-1;_AED=0.24;_eAED=0.24;_QI=122|0.57|0.62|1|0.85|0.75|8|218|1049
chr5_4 exon 48848029 48848144 48848029 ID=Msa0855520-mRNA-1:exon:15418;Parent=Msa0855520-mRNA-1
chr5_4 exon 48855335 48855436 48855335 ID=Msa0855520-mRNA-1:exon:15419;Parent=Msa0855520-mRNA-1
chr5_4 exon 48856031 48856612 48856031 ID=Msa0855520-mRNA-1:exon:15420;Parent=Msa0855520-mRNA-1
chr5_4 exon 48856824 48858425 48856824 ID=Msa0855520-mRNA-1:exon:15421;Parent=Msa0855520-mRNA-1
chr5_4 exon 48858609 48858849 48858609 ID=Msa0855520-mRNA-1:exon:15422;Parent=Msa0855520-mRNA-1
chr5_4 exon 48858961 48859219 48858961 ID=Msa0855520-mRNA-1:exon:15423;Parent=Msa0855520-mRNA-1
chr5_4 exon 48859302 48859580 48859302 ID=Msa0855520-mRNA-1:exon:15424;Parent=Msa0855520-mRNA-1
chr5_4 exon 48859667 48859975 48859667 ID=Msa0855520-mRNA-1:exon:15425;Parent=Msa0855520-mRNA-1
chr5_4 five_prime_UTR 48848029 48848144 48848029 ID=Msa0855520-mRNA-1:five_prime_utr;Parent=Msa0855520-mRNA-1
chr5_4 five_prime_UTR 48855335 48855340 48855335 ID=Msa0855520-mRNA-1:five_prime_utr;Parent=Msa0855520-mRNA-1
chr5_4 CDS 48855341 48855436 48855341 ID=Msa0855520-mRNA-1:cds;Parent=Msa0855520-mRNA-1
chr5_4 CDS 48856031 48856612 48856031 ID=Msa0855520-mRNA-1:cds;Parent=Msa0855520-mRNA-1
chr5_4 CDS 48856824 48858425 48856824 ID=Msa0855520-mRNA-1:cds;Parent=Msa0855520-mRNA-1
chr5_4 CDS 48858609 48858849 48858609 ID=Msa0855520-mRNA-1:cds;Parent=Msa0855520-mRNA-1
chr5_4 CDS 48858961 48859219 48858961 ID=Msa0855520-mRNA-1:cds;Parent=Msa0855520-mRNA-1
chr5_4 CDS 48859302 48859580 48859302 ID=Msa0855520-mRNA-1:cds;Parent=Msa0855520-mRNA-1
chr5_4 CDS 48859667 48859757 48859667 ID=Msa0855520-mRNA-1:cds;Parent=Msa0855520-mRNA-1
chr5_4 three_prime_UTR 48859758 48859975 48859758 ID=Msa0855520-mRNA-1:three_prime_utr;Parent=Msa0855520-mRNA-1
Gene Sequence

>Msa0855520

ATGGAGAAGAGTAGAAATGGAAGTGGGAGTCTTATAGATATTGTACTTTCTTGGACCCTCGAGGATGTTCTCAATGAAAATCTTTACGAAGACAAGGTTCATAAGATTCCAGAGACATTTAAGTCAGCAACAGATTACAAGAACTCTTTTATTCCTCTATTGTTTGAGGAAACACGCGCTGATTTATCTTCAAGCTTGTCTGGTGTGTCTCAAGCTGCTCTTTGTGAAATCAAGAATGTCGAACACAGCAAGCACTTGAAACTTCACAAATCTCAAAATCAATTCATTCAGTTCCATCATACCATATGGTTGGAGAGTACAACTGAATCTGATAGAGATGAAAATGGTGAAAATTATGAACCTGCATCAGGAGATCTTATTGCTATTACATACATTAGGCCAAAAAGCTTAAATGACTTGAACACACTCAACAGTCCCTACCATATTGCCTATGTTAATGGGGTAAAAAATATATTTTCTGGTAGAATCACAGTTCTATCTTCCAAATGCATGAAGATGGATGTTGAATCTGTATCCATGAAAAATAATACACAGAAAATGTATGCTGTTTACATTATGAACATGACAACAAATGTTCGTATTTGGAAAGCCTTGAACTCAAAGTCAAAGGGTGATCACCTCAACATTATTGAAAAAGTTTTGCAACCTAATCTCAATCTAAATATGAATGTAACCTGTATAATGCTTGTATTTCAGAGTGGAGAGAACTGCAAAATTTGCATGTCTCGATCAAATAGTAAAGCTTCTTTCATTACGAAAGACATAATTCGATCTCATAATCTGAATGAATCCCAACAAGATGCGGTTACAAGCTGTGCTAGTATGGTAGATTGCTCTCATGCTAATACCAAACTGATATGGGGACCACCAGGGACAGGAAAAACAAAGTCTGTTGCATGCTTGCTTTTTTCTCTACTCAAGTTGAAATCAAGAACATTGGCCTGTGCTCCAACTAATACTGCAGTGTTGCAAGTGGCAACAAGGTTGCATAGTTTAGTTACAGATTCACTTGACGATGATACATATGGTTTAAGTGACATTGTGCTATTTGGAAATAATAAGAGAATGAAAGTGGAAAGTTATCCAGGTCTTGAAGATATCTTTCTTGATTATCGCGTGAAAAATCTCATGCAGTGCTATGCTGAATGGAAGCATAGCTTTGAAGCAATGATCGAATTTCTTAGTGATCCTAGTAAACAATATTTCTTGGAGATGTCCAAAAAGGATTTTGTTATGGATAAAAATAGGATTTTAGCATCTGCATATCATGCATACAAGATAAGTAAGGGGAACTATGGTCTGATTATGAGGTTTGAGGATTATGTTCAGAAGGCACGGACAGAAATCACTAAGCTATACCAATTGGTTGAGAATGACAAAAAGAAATGTATGTTGACAATTGAGCGATTTGTGAAACAGAGAATTGATAAACTAAGAATGAATAAAGTCAATTTCTTCATGACTTTATATACAAGCTTAATGCAGCTTTGCTCAAAAAAAAAAAAAAAAAGCTTAATGCAGCTGCTTGAGGACCCTAGAGAGCAAATTTTCTCAAAGATGGGTTACAAGTCCCTTGATGATTTTGCTACAAATAGTATCGTAGTATCTGCATATAGTGCATACAAGGAAAATATAAGGTATGGTAAATATGATGATTCTTTGACTTTTGAGGGATATGTGAAGAGAGCAAGGAAAGAGATTATAGAGCTATACCAAAGTATCATGACCATGGAGCAATTTGTGAAGCAGAGATTTGGAGAATTAAGTGAGAAGCTAAAGTTCTTGATACATACCTTATGCACCCACATGCCAAAATCTTTCATTTCAGTTAACAACATGCTCCAAGCTCTTGACTTGTTAAAATCAATGGAAATTTCCTTGAGTCAAGCCAAATTTAAGCAAACTGTTGATGATTGTGAAGAAGAAAGCATTCCTGCTTGCTTTGGACCATCAAGTTTGGAAAGAAATGATTGCCTTCGGATACTAAGTTTCCTTTCCAACTCAATTTCGCTTCCTGAATTTAAAGTGAGACATCAAGTGGAAAAGTTTTGCTGGTCAAATGCTAGTCTAATTTTGTGTACTGTATCAAGTTCTGTCAAACTTTACTCAGAAGAGACGAGTCCAGTGAAATTTTTAGTGATTGATGAAGCAGCACAGCTGAAAGAATGTGAATCCATGATTCCGTTACAGCTCCCGGGTCTTCAACATTGCATTCTTATAGGTGATGAGAAACAACTTCCAGCGCTAGTCAAAAGCAAGTACCGAATGCATCCATCAATAAGCTTGTTTCCTTGCAAAGAGTTCTATGATGAAAAAATTTCGGATGCCCTAGCTGTCAAGGATGAAAGCTATAGTAAGAGCTTTCTTGAAGGAGAAATGTATTCTTCTTATTCTTTTATTAATATATCCAAGGGTGAGGAGACATTTGGTCGCGGACATAGCTTGAAGAACATGGTTGAAGTTGCCGTCATTTCTGAGATGATTAAAAACCTAAGAAAAGAGTTTATGAGGACAAAGAAGAAAGTTAGCATTGGAATAATATCTCCATATAATGCTCAAGTTTATGAAATCCAGGAGAAAGTTAAGCAAGACACTTGGGATTCTAATTCTGACTTTTCTGTTAATGTTCGTTCTGTTGATGGTTTCCAAGGCGGTGAGGAAGATATTATAATAATATCTACTGTGAGATCAAATGGAAGTGGTAATATCGGTTTTCTTTCAAATAGACAAAGAGCTAATGTTGCAATGACAAGGGCTAGATATTGTCTTTGGATATTAGGCAATGCATCTACTTTAGCCAGTAGTGATTCTATCTGGAGAAAGTTAATTATTGATGCTAAGAGAAGAGACTGTTATCATAATGCTGACGAGGACATGAAACTGGCTCGAGTTATTGATGATGTCTTGCTTGAGATTGAACTTCTTGAAGAATCTGAGTCAACATTTAAGAAACTCAGTCTATGTGAAAAATCTGAAATTGATGCTATACTTCCTCAAGGTAATCAAAAACTACATTTCTTCAAATATTCATGTAACATGTCAAGGAAACCTAGGGGCCCAAGTTTGAAGCTGGTGAATCAATTGCACAGTGTTCGTTCGCTAAGGGAAGACATTGAATCACCGTTGTGA
Protein sequence

>Msa0855520

MEKSRNGSGSLIDIVLSWTLEDVLNENLYEDKVHKIPETFKSATDYKNSFIPLLFEETRADLSSSLSGVSQAALCEIKNVEHSKHLKLHKSQNQFIQFHHTIWLESTTESDRDENGENYEPASGDLIAITYIRPKSLNDLNTLNSPYHIAYVNGVKNIFSGRITVLSSKCMKMDVESVSMKNNTQKMYAVYIMNMTTNVRIWKALNSKSKGDHLNIIEKVLQPNLNLNMNVTCIMLVFQSGENCKICMSRSNSKASFITKDIIRSHNLNESQQDAVTSCASMVDCSHANTKLIWGPPGTGKTKSVACLLFSLLKLKSRTLACAPTNTAVLQVATRLHSLVTDSLDDDTYGLSDIVLFGNNKRMKVESYPGLEDIFLDYRVKNLMQCYAEWKHSFEAMIEFLSDPSKQYFLEMSKKDFVMDKNRILASAYHAYKISKGNYGLIMRFEDYVQKARTEITKLYQLVENDKKKCMLTIERFVKQRIDKLRMNKVNFFMTLYTSLMQLCSKKKKKSLMQLLEDPREQIFSKMGYKSLDDFATNSIVVSAYSAYKENIRYGKYDDSLTFEGYVKRARKEIIELYQSIMTMEQFVKQRFGELSEKLKFLIHTLCTHMPKSFISVNNMLQALDLLKSMEISLSQAKFKQTVDDCEEESIPACFGPSSLERNDCLRILSFLSNSISLPEFKVRHQVEKFCWSNASLILCTVSSSVKLYSEETSPVKFLVIDEAAQLKECESMIPLQLPGLQHCILIGDEKQLPALVKSKYRMHPSISLFPCKEFYDEKISDALAVKDESYSKSFLEGEMYSSYSFINISKGEETFGRGHSLKNMVEVAVISEMIKNLRKEFMRTKKKVSIGIISPYNAQVYEIQEKVKQDTWDSNSDFSVNVRSVDGFQGGEEDIIIISTVRSNGSGNIGFLSNRQRANVAMTRARYCLWILGNASTLASSDSIWRKLIIDAKRRDCYHNADEDMKLARVIDDVLLEIELLEESESTFKKLSLCEKSEIDAILPQGNQKLHFFKYSCNMSRKPRGPSLKLVNQLHSVRSLREDIESPL*