Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740090 | XP_003617058.2 | 93.571 | 280 | 7 | 2 | 1 | 280 | 1 | 269 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740090 | G7KHG5 | 93.571 | 280 | 7 | 2 | 1 | 280 | 1 | 269 | 0.0 | 524 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0740090 | 0.889165 | 3.091127e-73 | -8.615850e-47 |
| Msa0017750 | Msa0740090 | 0.800928 | 1.144782e-48 | -8.615850e-47 |
| Msa0029960 | Msa0740090 | 0.814369 | 1.595411e-51 | -8.615850e-47 |
| Msa0029990 | Msa0740090 | 0.841635 | 4.216579e-58 | -8.615850e-47 |
| Msa0064120 | Msa0740090 | 0.890272 | 1.144260e-73 | -8.615850e-47 |
| Msa0071840 | Msa0740090 | 0.845410 | 4.132257e-59 | -8.615850e-47 |
| Msa0071850 | Msa0740090 | 0.814729 | 1.327981e-51 | -8.615850e-47 |
| Msa0098050 | Msa0740090 | 0.810282 | 1.245457e-50 | -8.615850e-47 |
| Msa0108880 | Msa0740090 | 0.858622 | 7.262133e-63 | -8.615850e-47 |
| Msa0609300 | Msa0740090 | 0.804419 | 2.180315e-49 | -8.615850e-47 |
| Msa0691910 | Msa0740090 | 0.802543 | 5.336440e-49 | -8.615850e-47 |
| Msa0736440 | Msa0740090 | 0.854445 | 1.225213e-61 | -8.615850e-47 |
| Msa0740090 | Msa0782750 | 0.941792 | 2.240195e-101 | -8.615850e-47 |
| Msa0740090 | Msa0820380 | 0.968046 | 4.009623e-128 | -8.615850e-47 |
| Msa0740090 | Msa0849650 | 0.834561 | 2.791154e-56 | -8.615850e-47 |
| Msa0740090 | Msa0853590 | 0.805374 | 1.376535e-49 | -8.615850e-47 |
| Msa0740090 | Msa0855720 | 0.804674 | 1.928923e-49 | -8.615850e-47 |
| Msa0740090 | Msa0860790 | 0.819572 | 1.082510e-52 | -8.615850e-47 |
| Msa0740090 | Msa1014320 | 0.863317 | 2.713651e-64 | -8.615850e-47 |
| Msa0740090 | Msa1021780 | 0.805544 | 1.268126e-49 | -8.615850e-47 |
| Msa0740090 | Msa1055310 | 0.858102 | 1.037376e-62 | -8.615850e-47 |
| Msa0740090 | Msa1125250 | 0.803592 | 3.238215e-49 | -8.615850e-47 |
| Msa0740090 | Msa1188170 | 0.804618 | 1.981740e-49 | -8.615850e-47 |
| Msa0740090 | Msa1211910 | 0.805691 | 1.181078e-49 | -8.615850e-47 |
| Msa0740090 | Msa1257340 | 0.834468 | 2.946317e-56 | -8.615850e-47 |
| Msa0740090 | Msa1262860 | 0.802256 | 6.115969e-49 | -8.615850e-47 |
| Msa0740090 | Msa1267050 | 0.801785 | 7.641784e-49 | -8.615850e-47 |
| Msa0740090 | Msa1267180 | 0.800246 | 1.576743e-48 | -8.615850e-47 |
| Msa0740090 | Msa1290380 | 0.830809 | 2.382930e-55 | -8.615850e-47 |
| Msa0740090 | Msa1290440 | 0.825798 | 3.850998e-54 | -8.615850e-47 |
| Msa0740090 | Msa1356350 | 0.831363 | 1.742167e-55 | -8.615850e-47 |
| Msa0740090 | Msa1360930 | 0.840500 | 8.375564e-58 | -8.615850e-47 |
| Msa0740090 | Msa1382580 | 0.802308 | 5.965954e-49 | -8.615850e-47 |
| Msa0740090 | Msa1404480 | 0.811738 | 6.026206e-51 | -8.615850e-47 |
| Msa0740090 | Msa1429860 | 0.876392 | 1.448159e-68 | -8.615850e-47 |
| Msa0740090 | Msa1435630 | 0.871609 | 5.997723e-67 | -8.615850e-47 |
| Msa0740090 | Msa1462560 | 0.813862 | 2.064651e-51 | -8.615850e-47 |
| Msa0125200 | Msa0740090 | 0.810207 | 1.293007e-50 | -8.615850e-47 |
| Msa0155180 | Msa0740090 | 0.891991 | 2.393648e-74 | -8.615850e-47 |
| Msa0182400 | Msa0740090 | 0.825183 | 5.387024e-54 | -8.615850e-47 |
| Msa0205570 | Msa0740090 | 0.806802 | 6.892861e-50 | -8.615850e-47 |
| Msa0382530 | Msa0740090 | 0.871784 | 5.249955e-67 | -8.615850e-47 |
| Msa0427820 | Msa0740090 | 0.810733 | 9.952288e-51 | -8.615850e-47 |
| Msa0432320 | Msa0740090 | 0.852289 | 5.089142e-61 | -8.615850e-47 |
| Msa0451170 | Msa0740090 | 0.838478 | 2.808426e-57 | -8.615850e-47 |
| Msa0460550 | Msa0740090 | 0.804213 | 2.406537e-49 | -8.615850e-47 |
| Msa0474060 | Msa0740090 | 0.808247 | 3.402234e-50 | -8.615850e-47 |
| Msa0342840 | Msa0740090 | 0.808255 | 3.388107e-50 | -8.615850e-47 |
| Msa0359010 | Msa0740090 | 0.848191 | 7.170717e-60 | -8.615850e-47 |
| Msa0498610 | Msa0740090 | 0.851461 | 8.742573e-61 | -8.615850e-47 |
| Msa0525210 | Msa0740090 | 0.872135 | 4.012344e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740090 | MtrunA17_Chr5g0440311 | 93.571 | 280 | 7 | 2 | 1 | 280 | 1 | 269 | 0.0 | 524 |
| Msa0740090 | MtrunA17_Chr5g0440321 | 36.170 | 282 | 143 | 9 | 1 | 264 | 1 | 263 | 2.62e-39 | 138 |
| Msa0740090 | MtrunA17_Chr5g0440291 | 45.029 | 171 | 83 | 4 | 1 | 164 | 3 | 169 | 9.14e-35 | 125 |
| Msa0740090 | MtrunA17_Chr6g0481571 | 43.158 | 95 | 54 | 0 | 5 | 99 | 6 | 100 | 4.63e-19 | 82.0 |
| Msa0740090 | MtrunA17_Chr7g0253661 | 35.417 | 96 | 62 | 0 | 6 | 101 | 4 | 99 | 3.16e-17 | 78.2 |
| Msa0740090 | MtrunA17_Chr3g0078561 | 36.735 | 98 | 60 | 2 | 4 | 99 | 11 | 108 | 1.08e-13 | 70.5 |
| Msa0740090 | MtrunA17_Chr4g0060201 | 37.234 | 94 | 59 | 0 | 12 | 105 | 21 | 114 | 1.20e-13 | 69.3 |
| Msa0740090 | MtrunA17_Chr8g0356011 | 39.286 | 84 | 50 | 1 | 11 | 93 | 22 | 105 | 5.80e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740090 | AT2G27140.1 | 30.493 | 223 | 143 | 4 | 10 | 232 | 11 | 221 | 2.20e-20 | 87.4 |
| Msa0740090 | AT5G20970.1 | 32.624 | 141 | 89 | 1 | 10 | 144 | 7 | 147 | 1.83e-16 | 77.4 |
Find 59 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATTCCATTCATGATA+TGG | 0.231919 | 5_1:-58909214 | None:intergenic |
| CACCAAAACCAAAACCTAAT+TGG | 0.259644 | 5_1:-58910426 | None:intergenic |
| GATAAGGATGTTAACCAATT+AGG | 0.278710 | 5_1:+58910412 | Msa0740090:CDS |
| TGTGGCATCCTTGTTGGTTT+TGG | 0.284530 | 5_1:+58910489 | Msa0740090:CDS |
| ACCAATAACTTCCCCTTCTT+AGG | 0.291447 | 5_1:-58910457 | None:intergenic |
| TTTGTGGCATTGAAGATTCT+TGG | 0.306163 | 5_1:-58910108 | None:intergenic |
| GTCTCACAATATGGAGGAAT+TGG | 0.306295 | 5_1:-58909977 | None:intergenic |
| GACAAGGGATTGAGAATATA+TGG | 0.314294 | 5_1:+58909933 | Msa0740090:CDS |
| ACGTCATTGGTCTCACAATA+TGG | 0.322478 | 5_1:-58909986 | None:intergenic |
| GCCTAAGAAGGGGAAGTTAT+TGG | 0.330941 | 5_1:+58910456 | Msa0740090:CDS |
| TTGTGGCATTGAAGATTCTT+GGG | 0.338711 | 5_1:-58910107 | None:intergenic |
| TGTGCTTGTGTTGGTGCCTT+AGG | 0.347331 | 5_1:-58910145 | None:intergenic |
| GATGTTAACCAATTAGGTTT+TGG | 0.362529 | 5_1:+58910418 | Msa0740090:CDS |
| GAGAATATATGGCATCGTTT+TGG | 0.366522 | 5_1:+58909944 | Msa0740090:CDS |
| TTAGCTGGAGTGATTAGCTT+TGG | 0.374539 | 5_1:-58910049 | None:intergenic |
| TCTTGGGGTGGATTTGTGAT+AGG | 0.374810 | 5_1:-58910091 | None:intergenic |
| TGTTCTTGAGGCTTATTAGC+TGG | 0.378209 | 5_1:-58910064 | None:intergenic |
| GTCTTTCACAATTGATCCTT+AGG | 0.382931 | 5_1:-58909913 | None:intergenic |
| TATTAAAACTGCTGAGGGTA+AGG | 0.412039 | 5_1:+58910312 | Msa0740090:CDS |
| TTTGGCAAGTATGGATCAAA+AGG | 0.417877 | 5_1:+58909153 | Msa0740090:exon |
| TTTATAATACATGTGTTAAG+AGG | 0.436463 | 5_1:-58910747 | None:intergenic |
| AAATCTTTGTAAACACGATC+AGG | 0.439333 | 5_1:-58909187 | None:intergenic |
| TTTGAGATCAAAGGATGATA+AGG | 0.439999 | 5_1:+58910396 | Msa0740090:CDS |
| ATTTGCAACCATATCATGAA+TGG | 0.458815 | 5_1:+58909206 | Msa0740090:CDS |
| TAGCACTCCACGCTCAAACT+TGG | 0.459332 | 5_1:-58910014 | None:intergenic |
| AAACTTGGCACTCACGTCAT+TGG | 0.464817 | 5_1:-58909999 | None:intergenic |
| TGGTGACATAAGGCCTAAGA+AGG | 0.480818 | 5_1:+58910444 | Msa0740090:CDS |
| GTGATAGGTTCTTGTTCTTG+AGG | 0.481402 | 5_1:-58910076 | None:intergenic |
| TAATATAAGTTTGAGATCAA+AGG | 0.489862 | 5_1:+58910387 | Msa0740090:CDS |
| TATAATTGTGGCATCCTTGT+TGG | 0.495699 | 5_1:+58910483 | Msa0740090:CDS |
| AGAGTGCAAGTGACTTCAAA+AGG | 0.504816 | 5_1:+58909887 | Msa0740090:CDS |
| GTTATTGGTGAATATAATTG+TGG | 0.517434 | 5_1:+58910471 | Msa0740090:CDS |
| TCAACCACTTGTGCTTGTGT+TGG | 0.527170 | 5_1:-58910154 | None:intergenic |
| GAGGACTAATGATGAGTTGT+TGG | 0.528622 | 5_1:+58910276 | Msa0740090:CDS |
| GGCATTGAAGATTCTTGGGG+TGG | 0.533531 | 5_1:-58910103 | None:intergenic |
| AAAACTTAGTGATGAACCTA+AGG | 0.543043 | 5_1:+58910129 | Msa0740090:CDS |
| ATCATCTCAAGGAGAATCAA+AGG | 0.545186 | 5_1:+58910570 | Msa0740090:CDS |
| AGTTGAAAATGATCAAAAGA+AGG | 0.550917 | 5_1:+58910252 | Msa0740090:CDS |
| ATTAAAACTGCTGAGGGTAA+GGG | 0.552764 | 5_1:+58910313 | Msa0740090:CDS |
| TGACTTCAAAAGGTGTCCTA+AGG | 0.553657 | 5_1:+58909897 | Msa0740090:CDS |
| GAAGTTATTAAAACTGCTGA+GGG | 0.577721 | 5_1:+58910307 | Msa0740090:CDS |
| AGAAGTTATTAAAACTGCTG+AGG | 0.579114 | 5_1:+58910306 | Msa0740090:CDS |
| CCCAAGCACCAAAACCAACA+AGG | 0.596289 | 5_1:-58910497 | None:intergenic |
| GGCACCAACACAAGCACAAG+TGG | 0.599712 | 5_1:+58910150 | Msa0740090:CDS |
| AAAATGATCAAAAGAAGGTG+AGG | 0.604262 | 5_1:+58910257 | Msa0740090:CDS |
| TGACACAAAGATTGAAAACA+AGG | 0.614384 | 5_1:+58910353 | Msa0740090:CDS |
| ACTCTTGTTCTAATGCTACC+AGG | 0.617254 | 5_1:+58909250 | Msa0740090:CDS |
| TGTGGCATTGAAGATTCTTG+GGG | 0.617922 | 5_1:-58910106 | None:intergenic |
| AGGATCAATTGTGAAAGACA+AGG | 0.627967 | 5_1:+58909917 | Msa0740090:CDS |
| GGATCAATTGTGAAAGACAA+GGG | 0.637612 | 5_1:+58909918 | Msa0740090:CDS |
| GTGACATAAGGCCTAAGAAG+GGG | 0.654964 | 5_1:+58910446 | Msa0740090:CDS |
| GGTGACATAAGGCCTAAGAA+GGG | 0.663272 | 5_1:+58910445 | Msa0740090:CDS |
| TGGTAGCATTAGAACAAGAG+TGG | 0.670251 | 5_1:-58909248 | None:intergenic |
| GAGGGTAAGGGAAAGAGACA+AGG | 0.675091 | 5_1:+58910325 | Msa0740090:CDS |
| ACAAGTATTAAATATAACAC+CGG | 0.680730 | 5_1:-58910721 | None:intergenic |
| GTGAGTGCCAAGTTTGAGCG+TGG | 0.681150 | 5_1:+58910007 | Msa0740090:CDS |
| AACAAGAACAGGATTCACAA+AGG | 0.687428 | 5_1:+58909856 | Msa0740090:intron |
| TCATTGGTCTCACAATATGG+AGG | 0.693475 | 5_1:-58909983 | None:intergenic |
| GAAGATTGATCAAATCACAC+CGG | 0.707478 | 5_1:+58910702 | Msa0740090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTTTTCATCAATAAT+TGG | - | chr5_1:58910214-58910233 | None:intergenic | 15.0% |
| !!! | TATATATTATTTCATTTTCC+CGG | + | chr5_1:58910793-58910812 | Msa0740090:three_prime_UTR | 15.0% |
| !!! | TTTTCTTTTTCATCAATAAT+TGG | - | chr5_1:58910214-58910233 | None:intergenic | 15.0% |
| !!! | GTTGATATTATTTTGTGTTT+TGG | - | chr5_1:58909121-58909140 | None:intergenic | 20.0% |
| !!! | ATCAACAACAAAGAAATTTT+TGG | + | chr5_1:58909135-58909154 | Msa0740090:five_prime_UTR | 20.0% |
| !! | AAATATTTGACAACACATTT+CGG | - | chr5_1:58909766-58909785 | None:intergenic | 20.0% |
| !! | ATATAGAAGAAAATGAGAAA+TGG | - | chr5_1:58909814-58909833 | None:intergenic | 20.0% |
| !!! | TAATATAAGTTTGAGATCAA+AGG | + | chr5_1:58910387-58910406 | Msa0740090:CDS | 20.0% |
| !! | ACAAGTATTAAATATAACAC+CGG | - | chr5_1:58910724-58910743 | None:intergenic | 20.0% |
| !! | TTTATAATACATGTGTTAAG+AGG | - | chr5_1:58910750-58910769 | None:intergenic | 20.0% |
| !!! | GTTGATATTATTTTGTGTTT+TGG | - | chr5_1:58909121-58909140 | None:intergenic | 20.0% |
| !!! | ATCAACAACAAAGAAATTTT+TGG | + | chr5_1:58909135-58909154 | Msa0740090:five_prime_UTR | 20.0% |
| !! | AAATATTTGACAACACATTT+CGG | - | chr5_1:58909766-58909785 | None:intergenic | 20.0% |
| !! | ATATAGAAGAAAATGAGAAA+TGG | - | chr5_1:58909814-58909833 | None:intergenic | 20.0% |
| !!! | TAATATAAGTTTGAGATCAA+AGG | + | chr5_1:58910387-58910406 | Msa0740090:CDS | 20.0% |
| !! | ACAAGTATTAAATATAACAC+CGG | - | chr5_1:58910724-58910743 | None:intergenic | 20.0% |
| !! | TTTATAATACATGTGTTAAG+AGG | - | chr5_1:58910750-58910769 | None:intergenic | 20.0% |
| !!! | AAAGAAATTTTTGGCAAGTA+TGG | + | chr5_1:58909144-58909163 | Msa0740090:exon | 25.0% |
| ! | AGAGATATTTCATATGTTGA+GGG | + | chr5_1:58909453-58909472 | Msa0740090:intron | 25.0% |
| !!! | ATAATTGGCTCTTTTTTCTT+TGG | - | chr5_1:58910199-58910218 | None:intergenic | 25.0% |
| ! | AGTTGAAAATGATCAAAAGA+AGG | + | chr5_1:58910252-58910271 | Msa0740090:CDS | 25.0% |
| ! | GTTATTGGTGAATATAATTG+TGG | + | chr5_1:58910471-58910490 | Msa0740090:CDS | 25.0% |
| !!! | AAAGAAATTTTTGGCAAGTA+TGG | + | chr5_1:58909144-58909163 | Msa0740090:exon | 25.0% |
| ! | AGAGATATTTCATATGTTGA+GGG | + | chr5_1:58909453-58909472 | Msa0740090:intron | 25.0% |
| !!! | ATAATTGGCTCTTTTTTCTT+TGG | - | chr5_1:58910199-58910218 | None:intergenic | 25.0% |
| ! | AGTTGAAAATGATCAAAAGA+AGG | + | chr5_1:58910252-58910271 | Msa0740090:CDS | 25.0% |
| ! | GTTATTGGTGAATATAATTG+TGG | + | chr5_1:58910471-58910490 | Msa0740090:CDS | 25.0% |
| AAATCTTTGTAAACACGATC+AGG | - | chr5_1:58909190-58909209 | None:intergenic | 30.0% | |
| ATTTGCAACCATATCATGAA+TGG | + | chr5_1:58909206-58909225 | Msa0740090:CDS | 30.0% | |
| TCTTCATTCCATTCATGATA+TGG | - | chr5_1:58909217-58909236 | None:intergenic | 30.0% | |
| TGCAAAGTTAAACATATACC+TGG | - | chr5_1:58909271-58909290 | None:intergenic | 30.0% | |
| GTACATAATATTAGACATCC+AGG | + | chr5_1:58909397-58909416 | Msa0740090:intron | 30.0% | |
| CAGAGATATTTCATATGTTG+AGG | + | chr5_1:58909452-58909471 | Msa0740090:intron | 30.0% | |
| ! | TTTTTGTTCAAAGAGTGATG+CGG | - | chr5_1:58909501-58909520 | None:intergenic | 30.0% |
| GGTTTAGTCATGTTTGATAT+CGG | + | chr5_1:58909626-58909645 | Msa0740090:intron | 30.0% | |
| AAAACTTAGTGATGAACCTA+AGG | + | chr5_1:58910129-58910148 | Msa0740090:CDS | 30.0% | |
| AAAATGATCAAAAGAAGGTG+AGG | + | chr5_1:58910257-58910276 | Msa0740090:CDS | 30.0% | |
| AGAAGTTATTAAAACTGCTG+AGG | + | chr5_1:58910306-58910325 | Msa0740090:CDS | 30.0% | |
| GAAGTTATTAAAACTGCTGA+GGG | + | chr5_1:58910307-58910326 | Msa0740090:CDS | 30.0% | |
| TGACACAAAGATTGAAAACA+AGG | + | chr5_1:58910353-58910372 | Msa0740090:CDS | 30.0% | |
| ! | TTTGAGATCAAAGGATGATA+AGG | + | chr5_1:58910396-58910415 | Msa0740090:CDS | 30.0% |
| GATAAGGATGTTAACCAATT+AGG | + | chr5_1:58910412-58910431 | Msa0740090:CDS | 30.0% | |
| ! | GATGTTAACCAATTAGGTTT+TGG | + | chr5_1:58910418-58910437 | Msa0740090:CDS | 30.0% |
| !!! | AACCAATTAGGTTTTGGTTT+TGG | + | chr5_1:58910424-58910443 | Msa0740090:CDS | 30.0% |
| TGTATGTCAAAAATGCATTG+TGG | + | chr5_1:58910521-58910540 | Msa0740090:CDS | 30.0% | |
| !!! | ATTTTGTGTTTTGGTTCTTC+CGG | - | chr5_1:58909112-58909131 | None:intergenic | 30.0% |
| AAATCTTTGTAAACACGATC+AGG | - | chr5_1:58909190-58909209 | None:intergenic | 30.0% | |
| ATTTGCAACCATATCATGAA+TGG | + | chr5_1:58909206-58909225 | Msa0740090:CDS | 30.0% | |
| TCTTCATTCCATTCATGATA+TGG | - | chr5_1:58909217-58909236 | None:intergenic | 30.0% | |
| TGCAAAGTTAAACATATACC+TGG | - | chr5_1:58909271-58909290 | None:intergenic | 30.0% | |
| GTACATAATATTAGACATCC+AGG | + | chr5_1:58909397-58909416 | Msa0740090:intron | 30.0% | |
| CAGAGATATTTCATATGTTG+AGG | + | chr5_1:58909452-58909471 | Msa0740090:intron | 30.0% | |
| ! | TTTTTGTTCAAAGAGTGATG+CGG | - | chr5_1:58909501-58909520 | None:intergenic | 30.0% |
| GGTTTAGTCATGTTTGATAT+CGG | + | chr5_1:58909626-58909645 | Msa0740090:intron | 30.0% | |
| AAAACTTAGTGATGAACCTA+AGG | + | chr5_1:58910129-58910148 | Msa0740090:CDS | 30.0% | |
| AAAATGATCAAAAGAAGGTG+AGG | + | chr5_1:58910257-58910276 | Msa0740090:CDS | 30.0% | |
| AGAAGTTATTAAAACTGCTG+AGG | + | chr5_1:58910306-58910325 | Msa0740090:CDS | 30.0% | |
| GAAGTTATTAAAACTGCTGA+GGG | + | chr5_1:58910307-58910326 | Msa0740090:CDS | 30.0% | |
| TGACACAAAGATTGAAAACA+AGG | + | chr5_1:58910353-58910372 | Msa0740090:CDS | 30.0% | |
| ! | TTTGAGATCAAAGGATGATA+AGG | + | chr5_1:58910396-58910415 | Msa0740090:CDS | 30.0% |
| GATAAGGATGTTAACCAATT+AGG | + | chr5_1:58910412-58910431 | Msa0740090:CDS | 30.0% | |
| ! | GATGTTAACCAATTAGGTTT+TGG | + | chr5_1:58910418-58910437 | Msa0740090:CDS | 30.0% |
| !!! | AACCAATTAGGTTTTGGTTT+TGG | + | chr5_1:58910424-58910443 | Msa0740090:CDS | 30.0% |
| TGTATGTCAAAAATGCATTG+TGG | + | chr5_1:58910521-58910540 | Msa0740090:CDS | 30.0% | |
| TTTGGCAAGTATGGATCAAA+AGG | + | chr5_1:58909153-58909172 | Msa0740090:exon | 35.0% | |
| ATAATATTAGACATCCAGGC+CGG | + | chr5_1:58909401-58909420 | Msa0740090:intron | 35.0% | |
| TTTAACGCGATTCAAAATCG+TGG | + | chr5_1:58909605-58909624 | Msa0740090:intron | 35.0% | |
| ! | CTTTCTTTTCCAACAAGAAC+AGG | + | chr5_1:58909845-58909864 | Msa0740090:intron | 35.0% |
| TTTGTGAATCCTGTTCTTGT+TGG | - | chr5_1:58909857-58909876 | None:intergenic | 35.0% | |
| AACAAGAACAGGATTCACAA+AGG | + | chr5_1:58909856-58909875 | Msa0740090:intron | 35.0% | |
| GTCTTTCACAATTGATCCTT+AGG | - | chr5_1:58909916-58909935 | None:intergenic | 35.0% | |
| AGGATCAATTGTGAAAGACA+AGG | + | chr5_1:58909917-58909936 | Msa0740090:CDS | 35.0% | |
| GGATCAATTGTGAAAGACAA+GGG | + | chr5_1:58909918-58909937 | Msa0740090:CDS | 35.0% | |
| GACAAGGGATTGAGAATATA+TGG | + | chr5_1:58909933-58909952 | Msa0740090:CDS | 35.0% | |
| ! | GAGAATATATGGCATCGTTT+TGG | + | chr5_1:58909944-58909963 | Msa0740090:CDS | 35.0% |
| ! | TTGTGGCATTGAAGATTCTT+GGG | - | chr5_1:58910110-58910129 | None:intergenic | 35.0% |
| ! | TTTGTGGCATTGAAGATTCT+TGG | - | chr5_1:58910111-58910130 | None:intergenic | 35.0% |
| ! | GGTTCATCACTAAGTTTTTG+TGG | - | chr5_1:58910127-58910146 | None:intergenic | 35.0% |
| TATTAAAACTGCTGAGGGTA+AGG | + | chr5_1:58910312-58910331 | Msa0740090:CDS | 35.0% | |
| ATTAAAACTGCTGAGGGTAA+GGG | + | chr5_1:58910313-58910332 | Msa0740090:CDS | 35.0% | |
| CACCAAAACCAAAACCTAAT+TGG | - | chr5_1:58910429-58910448 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTTTGGTGACATA+AGG | + | chr5_1:58910434-58910453 | Msa0740090:CDS | 35.0% |
| TATAATTGTGGCATCCTTGT+TGG | + | chr5_1:58910483-58910502 | Msa0740090:CDS | 35.0% | |
| TCATCATCATCATCATCTCA+AGG | + | chr5_1:58910559-58910578 | Msa0740090:CDS | 35.0% | |
| ATCATCTCAAGGAGAATCAA+AGG | + | chr5_1:58910570-58910589 | Msa0740090:CDS | 35.0% | |
| GAAGATTGATCAAATCACAC+CGG | + | chr5_1:58910702-58910721 | Msa0740090:three_prime_UTR | 35.0% | |
| !!! | TTTTGTGTTTTGGTTCTTCC+GGG | - | chr5_1:58909111-58909130 | None:intergenic | 35.0% |
| TTTGGCAAGTATGGATCAAA+AGG | + | chr5_1:58909153-58909172 | Msa0740090:exon | 35.0% | |
| ATAATATTAGACATCCAGGC+CGG | + | chr5_1:58909401-58909420 | Msa0740090:intron | 35.0% | |
| TTTAACGCGATTCAAAATCG+TGG | + | chr5_1:58909605-58909624 | Msa0740090:intron | 35.0% | |
| ! | CTTTCTTTTCCAACAAGAAC+AGG | + | chr5_1:58909845-58909864 | Msa0740090:intron | 35.0% |
| TTTGTGAATCCTGTTCTTGT+TGG | - | chr5_1:58909857-58909876 | None:intergenic | 35.0% | |
| AACAAGAACAGGATTCACAA+AGG | + | chr5_1:58909856-58909875 | Msa0740090:intron | 35.0% | |
| GTCTTTCACAATTGATCCTT+AGG | - | chr5_1:58909916-58909935 | None:intergenic | 35.0% | |
| AGGATCAATTGTGAAAGACA+AGG | + | chr5_1:58909917-58909936 | Msa0740090:CDS | 35.0% | |
| GGATCAATTGTGAAAGACAA+GGG | + | chr5_1:58909918-58909937 | Msa0740090:CDS | 35.0% | |
| GACAAGGGATTGAGAATATA+TGG | + | chr5_1:58909933-58909952 | Msa0740090:CDS | 35.0% | |
| ! | GAGAATATATGGCATCGTTT+TGG | + | chr5_1:58909944-58909963 | Msa0740090:CDS | 35.0% |
| ! | TTGTGGCATTGAAGATTCTT+GGG | - | chr5_1:58910110-58910129 | None:intergenic | 35.0% |
| ! | TTTGTGGCATTGAAGATTCT+TGG | - | chr5_1:58910111-58910130 | None:intergenic | 35.0% |
| ! | GGTTCATCACTAAGTTTTTG+TGG | - | chr5_1:58910127-58910146 | None:intergenic | 35.0% |
| TATTAAAACTGCTGAGGGTA+AGG | + | chr5_1:58910312-58910331 | Msa0740090:CDS | 35.0% | |
| ATTAAAACTGCTGAGGGTAA+GGG | + | chr5_1:58910313-58910332 | Msa0740090:CDS | 35.0% | |
| CACCAAAACCAAAACCTAAT+TGG | - | chr5_1:58910429-58910448 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTTTGGTGACATA+AGG | + | chr5_1:58910434-58910453 | Msa0740090:CDS | 35.0% |
| TATAATTGTGGCATCCTTGT+TGG | + | chr5_1:58910483-58910502 | Msa0740090:CDS | 35.0% | |
| TCATCATCATCATCATCTCA+AGG | + | chr5_1:58910559-58910578 | Msa0740090:CDS | 35.0% | |
| ATCATCTCAAGGAGAATCAA+AGG | + | chr5_1:58910570-58910589 | Msa0740090:CDS | 35.0% | |
| GAAGATTGATCAAATCACAC+CGG | + | chr5_1:58910702-58910721 | Msa0740090:three_prime_UTR | 35.0% | |
| TGGTAGCATTAGAACAAGAG+TGG | - | chr5_1:58909251-58909270 | None:intergenic | 40.0% | |
| ACTCTTGTTCTAATGCTACC+AGG | + | chr5_1:58909250-58909269 | Msa0740090:CDS | 40.0% | |
| ACCATGTGAGTTGTACTTAC+CGG | - | chr5_1:58909423-58909442 | None:intergenic | 40.0% | |
| TTTCATATGTTGAGGGCTTG+AGG | + | chr5_1:58909460-58909479 | Msa0740090:intron | 40.0% | |
| AGAGTGCAAGTGACTTCAAA+AGG | + | chr5_1:58909887-58909906 | Msa0740090:CDS | 40.0% | |
| !! | TGACTTCAAAAGGTGTCCTA+AGG | + | chr5_1:58909897-58909916 | Msa0740090:CDS | 40.0% |
| GTCTCACAATATGGAGGAAT+TGG | - | chr5_1:58909980-58909999 | None:intergenic | 40.0% | |
| ! | TCATTGGTCTCACAATATGG+AGG | - | chr5_1:58909986-58910005 | None:intergenic | 40.0% |
| ! | ACGTCATTGGTCTCACAATA+TGG | - | chr5_1:58909989-58910008 | None:intergenic | 40.0% |
| !! | TTAGCTGGAGTGATTAGCTT+TGG | - | chr5_1:58910052-58910071 | None:intergenic | 40.0% |
| TGTTCTTGAGGCTTATTAGC+TGG | - | chr5_1:58910067-58910086 | None:intergenic | 40.0% | |
| GTGATAGGTTCTTGTTCTTG+AGG | - | chr5_1:58910079-58910098 | None:intergenic | 40.0% | |
| ! | TGTGGCATTGAAGATTCTTG+GGG | - | chr5_1:58910109-58910128 | None:intergenic | 40.0% |
| GAGGACTAATGATGAGTTGT+TGG | + | chr5_1:58910276-58910295 | Msa0740090:CDS | 40.0% | |
| ACCAATAACTTCCCCTTCTT+AGG | - | chr5_1:58910460-58910479 | None:intergenic | 40.0% | |
| TGGTAGCATTAGAACAAGAG+TGG | - | chr5_1:58909251-58909270 | None:intergenic | 40.0% | |
| ACTCTTGTTCTAATGCTACC+AGG | + | chr5_1:58909250-58909269 | Msa0740090:CDS | 40.0% | |
| ACCATGTGAGTTGTACTTAC+CGG | - | chr5_1:58909423-58909442 | None:intergenic | 40.0% | |
| TTTCATATGTTGAGGGCTTG+AGG | + | chr5_1:58909460-58909479 | Msa0740090:intron | 40.0% | |
| AGAGTGCAAGTGACTTCAAA+AGG | + | chr5_1:58909887-58909906 | Msa0740090:CDS | 40.0% | |
| !! | TGACTTCAAAAGGTGTCCTA+AGG | + | chr5_1:58909897-58909916 | Msa0740090:CDS | 40.0% |
| GTCTCACAATATGGAGGAAT+TGG | - | chr5_1:58909980-58909999 | None:intergenic | 40.0% | |
| ! | TCATTGGTCTCACAATATGG+AGG | - | chr5_1:58909986-58910005 | None:intergenic | 40.0% |
| ! | ACGTCATTGGTCTCACAATA+TGG | - | chr5_1:58909989-58910008 | None:intergenic | 40.0% |
| !! | TTAGCTGGAGTGATTAGCTT+TGG | - | chr5_1:58910052-58910071 | None:intergenic | 40.0% |
| TGTTCTTGAGGCTTATTAGC+TGG | - | chr5_1:58910067-58910086 | None:intergenic | 40.0% | |
| GTGATAGGTTCTTGTTCTTG+AGG | - | chr5_1:58910079-58910098 | None:intergenic | 40.0% | |
| ! | TGTGGCATTGAAGATTCTTG+GGG | - | chr5_1:58910109-58910128 | None:intergenic | 40.0% |
| GAGGACTAATGATGAGTTGT+TGG | + | chr5_1:58910276-58910295 | Msa0740090:CDS | 40.0% | |
| ACCAATAACTTCCCCTTCTT+AGG | - | chr5_1:58910460-58910479 | None:intergenic | 40.0% | |
| AAACTTGGCACTCACGTCAT+TGG | - | chr5_1:58910002-58910021 | None:intergenic | 45.0% | |
| ! | TCTTGGGGTGGATTTGTGAT+AGG | - | chr5_1:58910094-58910113 | None:intergenic | 45.0% |
| TCAACCACTTGTGCTTGTGT+TGG | - | chr5_1:58910157-58910176 | None:intergenic | 45.0% | |
| TGGTGACATAAGGCCTAAGA+AGG | + | chr5_1:58910444-58910463 | Msa0740090:CDS | 45.0% | |
| GGTGACATAAGGCCTAAGAA+GGG | + | chr5_1:58910445-58910464 | Msa0740090:CDS | 45.0% | |
| GTGACATAAGGCCTAAGAAG+GGG | + | chr5_1:58910446-58910465 | Msa0740090:CDS | 45.0% | |
| GCCTAAGAAGGGGAAGTTAT+TGG | + | chr5_1:58910456-58910475 | Msa0740090:CDS | 45.0% | |
| !!! | TGTGGCATCCTTGTTGGTTT+TGG | + | chr5_1:58910489-58910508 | Msa0740090:CDS | 45.0% |
| !!! | TCCTTGTTGGTTTTGGTGCT+TGG | + | chr5_1:58910496-58910515 | Msa0740090:CDS | 45.0% |
| !!! | CCTTGTTGGTTTTGGTGCTT+GGG | + | chr5_1:58910497-58910516 | Msa0740090:CDS | 45.0% |
| !!! | CTTGTTGGTTTTGGTGCTTG+GGG | + | chr5_1:58910498-58910517 | Msa0740090:CDS | 45.0% |
| AAACTTGGCACTCACGTCAT+TGG | - | chr5_1:58910002-58910021 | None:intergenic | 45.0% | |
| ! | TCTTGGGGTGGATTTGTGAT+AGG | - | chr5_1:58910094-58910113 | None:intergenic | 45.0% |
| TCAACCACTTGTGCTTGTGT+TGG | - | chr5_1:58910157-58910176 | None:intergenic | 45.0% | |
| TGGTGACATAAGGCCTAAGA+AGG | + | chr5_1:58910444-58910463 | Msa0740090:CDS | 45.0% | |
| GGTGACATAAGGCCTAAGAA+GGG | + | chr5_1:58910445-58910464 | Msa0740090:CDS | 45.0% | |
| GTGACATAAGGCCTAAGAAG+GGG | + | chr5_1:58910446-58910465 | Msa0740090:CDS | 45.0% | |
| GCCTAAGAAGGGGAAGTTAT+TGG | + | chr5_1:58910456-58910475 | Msa0740090:CDS | 45.0% | |
| !!! | TGTGGCATCCTTGTTGGTTT+TGG | + | chr5_1:58910489-58910508 | Msa0740090:CDS | 45.0% |
| !!! | TCCTTGTTGGTTTTGGTGCT+TGG | + | chr5_1:58910496-58910515 | Msa0740090:CDS | 45.0% |
| !!! | CCTTGTTGGTTTTGGTGCTT+GGG | + | chr5_1:58910497-58910516 | Msa0740090:CDS | 45.0% |
| !!! | CTTGTTGGTTTTGGTGCTTG+GGG | + | chr5_1:58910498-58910517 | Msa0740090:CDS | 45.0% |
| GCCGGTAAGTACAACTCACA+TGG | + | chr5_1:58909419-58909438 | Msa0740090:intron | 50.0% | |
| TAGCACTCCACGCTCAAACT+TGG | - | chr5_1:58910017-58910036 | None:intergenic | 50.0% | |
| ! | GGCATTGAAGATTCTTGGGG+TGG | - | chr5_1:58910106-58910125 | None:intergenic | 50.0% |
| ! | TGTGCTTGTGTTGGTGCCTT+AGG | - | chr5_1:58910148-58910167 | None:intergenic | 50.0% |
| GAGGGTAAGGGAAAGAGACA+AGG | + | chr5_1:58910325-58910344 | Msa0740090:CDS | 50.0% | |
| CCCAAGCACCAAAACCAACA+AGG | - | chr5_1:58910500-58910519 | None:intergenic | 50.0% | |
| GCCGGTAAGTACAACTCACA+TGG | + | chr5_1:58909419-58909438 | Msa0740090:intron | 50.0% | |
| TAGCACTCCACGCTCAAACT+TGG | - | chr5_1:58910017-58910036 | None:intergenic | 50.0% | |
| ! | GGCATTGAAGATTCTTGGGG+TGG | - | chr5_1:58910106-58910125 | None:intergenic | 50.0% |
| ! | TGTGCTTGTGTTGGTGCCTT+AGG | - | chr5_1:58910148-58910167 | None:intergenic | 50.0% |
| GAGGGTAAGGGAAAGAGACA+AGG | + | chr5_1:58910325-58910344 | Msa0740090:CDS | 50.0% | |
| CCCAAGCACCAAAACCAACA+AGG | - | chr5_1:58910500-58910519 | None:intergenic | 50.0% | |
| GTGAGTTGTACTTACCGGCC+TGG | - | chr5_1:58909418-58909437 | None:intergenic | 55.0% | |
| TATGTTGAGGGCTTGAGGCG+CGG | + | chr5_1:58909465-58909484 | Msa0740090:intron | 55.0% | |
| GTGAGTGCCAAGTTTGAGCG+TGG | + | chr5_1:58910007-58910026 | Msa0740090:CDS | 55.0% | |
| GGCACCAACACAAGCACAAG+TGG | + | chr5_1:58910150-58910169 | Msa0740090:CDS | 55.0% | |
| GTGAGTTGTACTTACCGGCC+TGG | - | chr5_1:58909418-58909437 | None:intergenic | 55.0% | |
| TATGTTGAGGGCTTGAGGCG+CGG | + | chr5_1:58909465-58909484 | Msa0740090:intron | 55.0% | |
| GTGAGTGCCAAGTTTGAGCG+TGG | + | chr5_1:58910007-58910026 | Msa0740090:CDS | 55.0% | |
| GGCACCAACACAAGCACAAG+TGG | + | chr5_1:58910150-58910169 | Msa0740090:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 58909111 | 58910813 | 58909111 | ID=Msa0740090;Name=Msa0740090 |
| chr5_1 | mRNA | 58909111 | 58910813 | 58909111 | ID=Msa0740090-mRNA-1;Parent=Msa0740090;Name=Msa0740090-mRNA-1;_AED=0.26;_eAED=0.26;_QI=52|1|1|1|1|1|2|213|280 |
| chr5_1 | exon | 58909111 | 58909271 | 58909111 | ID=Msa0740090-mRNA-1:exon:16872;Parent=Msa0740090-mRNA-1 |
| chr5_1 | exon | 58909867 | 58910813 | 58909867 | ID=Msa0740090-mRNA-1:exon:16873;Parent=Msa0740090-mRNA-1 |
| chr5_1 | five_prime_UTR | 58909111 | 58909162 | 58909111 | ID=Msa0740090-mRNA-1:five_prime_utr;Parent=Msa0740090-mRNA-1 |
| chr5_1 | CDS | 58909163 | 58909271 | 58909163 | ID=Msa0740090-mRNA-1:cds;Parent=Msa0740090-mRNA-1 |
| chr5_1 | CDS | 58909867 | 58910600 | 58909867 | ID=Msa0740090-mRNA-1:cds;Parent=Msa0740090-mRNA-1 |
| chr5_1 | three_prime_UTR | 58910601 | 58910813 | 58910601 | ID=Msa0740090-mRNA-1:three_prime_utr;Parent=Msa0740090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
