Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736440 | XP_003616166.2 | 97.390 | 843 | 22 | 0 | 1 | 843 | 1 | 843 | 0.0 | 1723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736440 | sp|Q9FX32|SUS6_ARATH | 72.581 | 806 | 221 | 0 | 7 | 812 | 9 | 814 | 0.0 | 1269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736440 | G7KFT7 | 97.390 | 843 | 22 | 0 | 1 | 843 | 1 | 843 | 0.0 | 1723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0736440 | 0.813892 | 2.033788e-51 | -8.615850e-47 |
| Msa0064120 | Msa0736440 | 0.817015 | 4.105267e-52 | -8.615850e-47 |
| Msa0108880 | Msa0736440 | 0.812343 | 4.445900e-51 | -8.615850e-47 |
| Msa0736440 | Msa0740090 | 0.854445 | 1.225213e-61 | -8.615850e-47 |
| Msa0736440 | Msa0781890 | 0.803854 | 2.857060e-49 | -8.615850e-47 |
| Msa0736440 | Msa0782750 | 0.816523 | 5.292421e-52 | -8.615850e-47 |
| Msa0736440 | Msa0820380 | 0.836996 | 6.745080e-57 | -8.615850e-47 |
| Msa0736440 | Msa0849650 | 0.824362 | 8.411091e-54 | -8.615850e-47 |
| Msa0736440 | Msa0855720 | 0.801425 | 9.061103e-49 | -8.615850e-47 |
| Msa0736440 | Msa1014320 | 0.827214 | 1.770542e-54 | -8.615850e-47 |
| Msa0736440 | Msa1055310 | 0.812529 | 4.049327e-51 | -8.615850e-47 |
| Msa0736440 | Msa1290380 | 0.800323 | 1.520991e-48 | -8.615850e-47 |
| Msa0736440 | Msa1356350 | 0.825152 | 5.477728e-54 | -8.615850e-47 |
| Msa0736440 | Msa1429860 | 0.828880 | 7.029442e-55 | -8.615850e-47 |
| Msa0736440 | Msa1435630 | 0.814578 | 1.434370e-51 | -8.615850e-47 |
| Msa0155180 | Msa0736440 | 0.810213 | 1.288702e-50 | -8.615850e-47 |
| Msa0382530 | Msa0736440 | 0.814351 | 1.610403e-51 | -8.615850e-47 |
| Msa0525210 | Msa0736440 | 0.812666 | 3.780185e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736440 | MtrunA17_Chr5g0433761 | 97.390 | 843 | 22 | 0 | 1 | 843 | 1 | 843 | 0.0 | 1723 |
| Msa0736440 | MtrunA17_Chr3g0109841 | 82.091 | 832 | 144 | 2 | 1 | 827 | 1 | 832 | 0.0 | 1450 |
| Msa0736440 | MtrunA17_Chr6g0481131 | 72.249 | 818 | 225 | 1 | 13 | 828 | 15 | 832 | 0.0 | 1270 |
| Msa0736440 | MtrunA17_Chr6g0481171 | 72.908 | 705 | 189 | 1 | 131 | 833 | 5 | 709 | 0.0 | 1092 |
| Msa0736440 | MtrunA17_Chr7g0269581 | 55.915 | 803 | 350 | 2 | 9 | 811 | 9 | 807 | 0.0 | 954 |
| Msa0736440 | MtrunA17_Chr1g0195241 | 57.902 | 772 | 324 | 1 | 34 | 805 | 16 | 786 | 0.0 | 939 |
| Msa0736440 | MtrunA17_Chr2g0301621 | 54.647 | 807 | 360 | 4 | 6 | 811 | 3 | 804 | 0.0 | 935 |
| Msa0736440 | MtrunA17_Chr4g0070011 | 54.907 | 805 | 357 | 4 | 4 | 807 | 3 | 802 | 0.0 | 930 |
| Msa0736440 | MtrunA17_Chr6g0481241 | 63.212 | 193 | 49 | 1 | 636 | 828 | 1 | 171 | 3.29e-80 | 258 |
| Msa0736440 | MtrunA17_Chr6g0481261 | 86.408 | 103 | 14 | 0 | 636 | 738 | 1 | 103 | 7.27e-60 | 198 |
| Msa0736440 | MtrunA17_Chr4g0064501 | 25.693 | 541 | 324 | 20 | 283 | 777 | 168 | 676 | 9.47e-35 | 143 |
| Msa0736440 | MtrunA17_Chr5g0443091 | 25.769 | 520 | 316 | 19 | 283 | 758 | 171 | 664 | 1.79e-33 | 139 |
| Msa0736440 | MtrunA17_Chr6g0481151 | 77.027 | 74 | 17 | 0 | 566 | 639 | 24 | 97 | 1.33e-32 | 122 |
| Msa0736440 | MtrunA17_Chr3g0096241 | 25.194 | 516 | 321 | 18 | 283 | 758 | 167 | 657 | 7.22e-32 | 134 |
| Msa0736440 | MtrunA17_Chr6g0481161 | 90.909 | 44 | 4 | 0 | 688 | 731 | 1 | 44 | 3.94e-23 | 92.8 |
| Msa0736440 | MtrunA17_Chr4g0009181 | 52.239 | 67 | 31 | 1 | 7 | 72 | 10 | 76 | 3.52e-17 | 77.0 |
| Msa0736440 | MtrunA17_Chr6g0481271 | 43.939 | 66 | 37 | 0 | 768 | 833 | 1 | 66 | 4.21e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736440 | AT1G73370.3 | 72.581 | 806 | 221 | 0 | 7 | 812 | 9 | 814 | 0.0 | 1269 |
| Msa0736440 | AT1G73370.1 | 72.581 | 806 | 221 | 0 | 7 | 812 | 9 | 814 | 0.0 | 1269 |
| Msa0736440 | AT5G37180.1 | 70.933 | 836 | 238 | 2 | 10 | 843 | 5 | 837 | 0.0 | 1248 |
| Msa0736440 | AT1G73370.2 | 73.377 | 770 | 205 | 0 | 43 | 812 | 1 | 770 | 0.0 | 1217 |
| Msa0736440 | AT5G37180.2 | 75.193 | 649 | 159 | 1 | 197 | 843 | 1 | 649 | 0.0 | 1035 |
| Msa0736440 | AT4G02280.1 | 56.398 | 805 | 350 | 1 | 7 | 811 | 6 | 809 | 0.0 | 971 |
| Msa0736440 | AT5G37180.3 | 75.635 | 591 | 142 | 1 | 255 | 843 | 1 | 591 | 0.0 | 947 |
| Msa0736440 | AT5G49190.1 | 54.512 | 809 | 355 | 3 | 9 | 811 | 5 | 806 | 0.0 | 935 |
| Msa0736440 | AT5G49190.2 | 55.598 | 786 | 336 | 3 | 32 | 811 | 18 | 796 | 0.0 | 929 |
| Msa0736440 | AT5G20830.3 | 55.266 | 807 | 353 | 5 | 7 | 811 | 8 | 808 | 0.0 | 922 |
| Msa0736440 | AT5G20830.2 | 55.266 | 807 | 353 | 5 | 7 | 811 | 8 | 808 | 0.0 | 922 |
| Msa0736440 | AT5G20830.1 | 55.266 | 807 | 353 | 5 | 7 | 811 | 8 | 808 | 0.0 | 922 |
| Msa0736440 | AT5G49190.3 | 57.645 | 739 | 312 | 1 | 73 | 811 | 3 | 740 | 0.0 | 917 |
| Msa0736440 | AT3G43190.2 | 54.703 | 808 | 358 | 5 | 6 | 811 | 7 | 808 | 0.0 | 913 |
| Msa0736440 | AT3G43190.1 | 54.703 | 808 | 358 | 5 | 6 | 811 | 7 | 808 | 0.0 | 913 |
| Msa0736440 | AT5G11110.1 | 26.248 | 541 | 323 | 22 | 283 | 781 | 177 | 683 | 4.72e-34 | 141 |
| Msa0736440 | AT4G10120.4 | 24.854 | 515 | 318 | 17 | 283 | 758 | 23 | 507 | 2.00e-32 | 135 |
| Msa0736440 | AT5G20280.1 | 24.816 | 544 | 336 | 19 | 283 | 783 | 170 | 683 | 2.16e-32 | 136 |
| Msa0736440 | AT4G10120.2 | 25.097 | 518 | 313 | 18 | 283 | 758 | 197 | 681 | 2.23e-32 | 136 |
| Msa0736440 | AT4G10120.3 | 25.097 | 518 | 313 | 18 | 283 | 758 | 197 | 681 | 2.23e-32 | 136 |
| Msa0736440 | AT4G10120.1 | 25.097 | 518 | 313 | 18 | 283 | 758 | 197 | 681 | 2.23e-32 | 136 |
| Msa0736440 | AT4G10120.5 | 24.494 | 494 | 306 | 15 | 302 | 758 | 17 | 480 | 3.83e-31 | 131 |
| Msa0736440 | AT1G04920.1 | 25.551 | 544 | 343 | 20 | 258 | 758 | 138 | 662 | 4.47e-31 | 132 |
Find 191 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAGTTCATGGTTATTT+TGG | 0.070641 | 5_1:+52885339 | Msa0736440:CDS |
| TGCAAACAAGTTGGTAAATA+TGG | 0.130999 | 5_1:+52888145 | Msa0736440:CDS |
| TTCCATTAGGTCCAAAATTT+TGG | 0.135688 | 5_1:-52886269 | None:intergenic |
| TAATTTCTTATTCAAGAATT+TGG | 0.152548 | 5_1:+52888244 | Msa0736440:CDS |
| GGATGCAACAACCAAAATTT+TGG | 0.164817 | 5_1:+52886258 | Msa0736440:intron |
| GAAGAAGACAAGGTTAATTT+AGG | 0.178184 | 5_1:-52884589 | None:intergenic |
| GGCCTATGTAGAGTTGTTTC+TGG | 0.186575 | 5_1:+52886796 | Msa0736440:CDS |
| CTTGCCATCGAGAAGATTAT+TGG | 0.212816 | 5_1:-52887428 | None:intergenic |
| GACTTTGGAGCATTTGATAT+TGG | 0.226670 | 5_1:+52884562 | Msa0736440:CDS |
| CAAACCTTCCAGCAATTTCT+TGG | 0.232070 | 5_1:-52886621 | None:intergenic |
| TGACATGAGAAGTGATATTT+AGG | 0.235805 | 5_1:-52886541 | None:intergenic |
| AAATTACACGGATGGAAATT+TGG | 0.236852 | 5_1:+52886315 | Msa0736440:CDS |
| GGTTATTACTTGGAGCTTAA+TGG | 0.249918 | 5_1:+52889085 | Msa0736440:intron |
| TTCAAGGACAACTGGGAAAT+TGG | 0.253007 | 5_1:+52884651 | Msa0736440:CDS |
| ATATATACCTTCTTATATAT+TGG | 0.272385 | 5_1:+52889180 | Msa0736440:three_prime_UTR |
| GGGAAGCCAGATCTTGTTAT+TGG | 0.282391 | 5_1:+52886292 | Msa0736440:CDS |
| GGTTGCTTGCCAACTGGTTT+TGG | 0.291946 | 5_1:-52888410 | None:intergenic |
| TGGGGAGCACTTACACCTTT+TGG | 0.294971 | 5_1:+52888165 | Msa0736440:CDS |
| CATGCTGCATTTACTCTTCC+AGG | 0.298265 | 5_1:+52886775 | Msa0736440:CDS |
| CATATGTAGCCTTTGCAATT+AGG | 0.299383 | 5_1:+52883952 | Msa0736440:CDS |
| ATCACTACTTTGAATATTGT+TGG | 0.304732 | 5_1:-52885315 | None:intergenic |
| CATGAAACTTCATGAATTAA+TGG | 0.308219 | 5_1:+52883589 | Msa0736440:CDS |
| CTTCCTTTCAGGTTATTACT+TGG | 0.312619 | 5_1:+52889075 | Msa0736440:intron |
| ACTTTGGAGCATTTGATATT+GGG | 0.313644 | 5_1:+52884563 | Msa0736440:CDS |
| TTAACCTTGTCTTCTTCAAT+TGG | 0.317572 | 5_1:+52884595 | Msa0736440:CDS |
| TTCTTAACTTCAAGGACAAC+TGG | 0.323354 | 5_1:+52884643 | Msa0736440:CDS |
| TTGTCTTCTTCAATTGGAAA+TGG | 0.326217 | 5_1:+52884601 | Msa0736440:CDS |
| CCTGCTTTGTATGAAGCATT+TGG | 0.338153 | 5_1:+52887725 | Msa0736440:CDS |
| TTTGGGCAAGCAGATGTTCT+TGG | 0.338987 | 5_1:+52885357 | Msa0736440:CDS |
| AAATGAAAGAAATTATGTTT+TGG | 0.349393 | 5_1:+52883640 | Msa0736440:CDS |
| GTAGTGATCTTCTCAGTTCA+TGG | 0.349932 | 5_1:+52885330 | Msa0736440:CDS |
| TATCTCTTAATTTCTTTCAA+TGG | 0.354240 | 5_1:+52883445 | Msa0736440:exon |
| TTTCAAAGTTCTTAACTTCA+AGG | 0.358243 | 5_1:+52884635 | Msa0736440:CDS |
| ACAACAGGTAGTTTACATAT+TGG | 0.359818 | 5_1:+52885687 | Msa0736440:intron |
| ACACCCTTTCCTTGAATTTG+AGG | 0.366684 | 5_1:-52884052 | None:intergenic |
| GCAAAGTAGACCCATCATAT+TGG | 0.374838 | 5_1:+52887906 | Msa0736440:CDS |
| ATCAAAAGATAGAGAGGAAA+TGG | 0.388957 | 5_1:+52887562 | Msa0736440:CDS |
| TAAAGAATTTGTCCGCTTCA+AGG | 0.389301 | 5_1:-52883480 | None:intergenic |
| GGAGGTTCATCACTTGGAAT+AGG | 0.389616 | 5_1:-52888389 | None:intergenic |
| ATAAGAAATTATAGAACATA+TGG | 0.396630 | 5_1:-52888232 | None:intergenic |
| TCACTTCTCATGTCAATTCA+TGG | 0.397520 | 5_1:+52886549 | Msa0736440:CDS |
| GCAAACAAGTTGGTAAATAT+GGG | 0.400709 | 5_1:+52888146 | Msa0736440:CDS |
| ATTTCCAGGTTCACTGGATC+CGG | 0.402834 | 5_1:-52885276 | None:intergenic |
| TCACTAATGGCTAGAAAACT+TGG | 0.405015 | 5_1:+52886343 | Msa0736440:CDS |
| TTAGGCCTAATCCAGGAGTC+TGG | 0.411626 | 5_1:+52883970 | Msa0736440:CDS |
| TTCATTTATGCGCTGCAATC+CGG | 0.411646 | 5_1:-52887945 | None:intergenic |
| CAATTTCATTTCCAGGTTGA+AGG | 0.411773 | 5_1:+52885170 | Msa0736440:intron |
| CTTTATCTTGTAGCTATACA+TGG | 0.413751 | 5_1:+52888114 | Msa0736440:intron |
| TAGCAAAGCACTTCTTCATA+TGG | 0.418506 | 5_1:-52883541 | None:intergenic |
| ATAATTGTTGATGGTGTCTC+AGG | 0.422446 | 5_1:+52887818 | Msa0736440:CDS |
| TTTACCTGGCCACCAGTGTC+TGG | 0.422921 | 5_1:-52885384 | None:intergenic |
| GATCTGGCTTCCCTTCCATT+AGG | 0.423211 | 5_1:-52886282 | None:intergenic |
| TGATCCTTCTCCCTTTCTCT+AGG | 0.427018 | 5_1:-52883568 | None:intergenic |
| ACTTAAGTGGGTTAGTTGAA+TGG | 0.428392 | 5_1:+52887468 | Msa0736440:CDS |
| AGCAATTTCTTGGTACGTAC+TGG | 0.428711 | 5_1:-52886611 | None:intergenic |
| CAATGTGGATTGTGAACGTC+TGG | 0.431421 | 5_1:-52888972 | None:intergenic |
| TAATTTCCAATAACAAGATC+TGG | 0.431825 | 5_1:-52886298 | None:intergenic |
| ACGTAGAATGTGAGAGTGTT+TGG | 0.432164 | 5_1:-52885943 | None:intergenic |
| AATGCATTTGAAGCAGACTT+TGG | 0.434330 | 5_1:+52884547 | Msa0736440:CDS |
| GAAATCACGTTCCAATATGA+TGG | 0.435511 | 5_1:-52887917 | None:intergenic |
| CTACTCTGCTTCAATGCATC+AGG | 0.439087 | 5_1:-52883515 | None:intergenic |
| AAATTTGGTGGCATCACTAA+TGG | 0.439094 | 5_1:+52886330 | Msa0736440:CDS |
| AGATAATGCAGGAAGGGTGA+AGG | 0.439483 | 5_1:+52885218 | Msa0736440:CDS |
| TGTTATCTACTTTATTAAAG+AGG | 0.443546 | 5_1:-52886939 | None:intergenic |
| GCCTATGTAGAGTTGTTTCT+GGG | 0.445424 | 5_1:+52886797 | Msa0736440:CDS |
| CGATGCATTGCTGACTCAAA+GGG | 0.446727 | 5_1:+52887689 | Msa0736440:CDS |
| ATTCCTTTCTCTGTATGAAA+AGG | 0.447223 | 5_1:-52885969 | None:intergenic |
| CCATCAACAATTATTTCTGC+TGG | 0.448191 | 5_1:-52887809 | None:intergenic |
| AGACTCACCACAAGAATTTG+AGG | 0.449816 | 5_1:-52885775 | None:intergenic |
| CCTCTTCCAATGCCTTGACT+TGG | 0.450605 | 5_1:-52885711 | None:intergenic |
| GGTTCACTGGATCCGGAGCT+TGG | 0.456620 | 5_1:-52885269 | None:intergenic |
| CATTTCCAGGTTGAAGGAGT+GGG | 0.459088 | 5_1:+52885176 | Msa0736440:intron |
| CGTACTGGTTATGATGAAAT+CGG | 0.460752 | 5_1:-52886596 | None:intergenic |
| CTTGCCAGACACTGGTGGCC+AGG | 0.463571 | 5_1:+52885380 | Msa0736440:CDS |
| TTTGTTAACTTGCTTCCAAA+AGG | 0.466022 | 5_1:-52888180 | None:intergenic |
| GAGTAAACCTCTCAAGATAA+GGG | 0.468220 | 5_1:-52886025 | None:intergenic |
| GTGAACCTTGTCATAGTTGG+TGG | 0.468895 | 5_1:+52887521 | Msa0736440:CDS |
| CACTTAGTTCCTCTAGCATC+AGG | 0.468958 | 5_1:-52885891 | None:intergenic |
| AGAGTTGGTTGCTTGCCAAC+TGG | 0.472054 | 5_1:-52888416 | None:intergenic |
| TACTCCCAGACTCCTGGATT+AGG | 0.474616 | 5_1:-52883975 | None:intergenic |
| CATTGATTGGTTCAAACTCC+TGG | 0.474899 | 5_1:-52885917 | None:intergenic |
| CACAGATTACCTCAAATTCA+AGG | 0.476544 | 5_1:+52884043 | Msa0736440:CDS |
| GAGTGTTTGGTATCATTGAT+TGG | 0.478819 | 5_1:-52885930 | None:intergenic |
| GTCCGCTTCAAGGTATGTGT+TGG | 0.479582 | 5_1:-52883470 | None:intergenic |
| CGTACATACTCCCAGACTCC+TGG | 0.479613 | 5_1:-52883981 | None:intergenic |
| CTTGAATTTGAGGTAATCTG+TGG | 0.479667 | 5_1:-52884042 | None:intergenic |
| TGAGTAAACCTCTCAAGATA+AGG | 0.482349 | 5_1:-52886026 | None:intergenic |
| GAAAGGAATCTTGCGCCAAT+GGG | 0.483913 | 5_1:+52885983 | Msa0736440:CDS |
| AAGAGGAGATCTTCAATAGC+AGG | 0.484163 | 5_1:-52886922 | None:intergenic |
| AGAAAGGAATCTTGCGCCAA+TGG | 0.485834 | 5_1:+52885982 | Msa0736440:CDS |
| AAAGGATGGGGAGATAATGC+AGG | 0.486672 | 5_1:+52885207 | Msa0736440:CDS |
| CCAGCAGAAATAATTGTTGA+TGG | 0.490757 | 5_1:+52887809 | Msa0736440:CDS |
| ATGAAGACTCAGATGTTAAG+TGG | 0.491444 | 5_1:+52886506 | Msa0736440:CDS |
| GTTCACAATCCACATTGAAA+AGG | 0.494536 | 5_1:+52888978 | Msa0736440:CDS |
| CTAATTGCAAAGGCTACATA+TGG | 0.497187 | 5_1:-52883951 | None:intergenic |
| AGTACGTACCAAGAAATTGC+TGG | 0.501425 | 5_1:+52886613 | Msa0736440:CDS |
| AGGTGAAGCTATATTGAACT+TGG | 0.506881 | 5_1:-52886836 | None:intergenic |
| GAGCCTTGTTGTTTGAGAGT+TGG | 0.508078 | 5_1:-52888431 | None:intergenic |
| AGTGGGTTAGTTGAATGGTA+TGG | 0.508647 | 5_1:+52887473 | Msa0736440:CDS |
| GCATGGCTTTCATACTGTCC+AGG | 0.512596 | 5_1:-52886757 | None:intergenic |
| TTGAATTTGAGGTAATCTGT+GGG | 0.512878 | 5_1:-52884041 | None:intergenic |
| CTTGATTCATCTCCATTGAG+AGG | 0.513096 | 5_1:-52887854 | None:intergenic |
| CCAAGTCAAGGCATTGGAAG+AGG | 0.514877 | 5_1:+52885711 | Msa0736440:CDS |
| ATTTCCAGGTTGAAGGAGTG+GGG | 0.515424 | 5_1:+52885177 | Msa0736440:intron |
| TTACCTCAAATTCAAGGAAA+GGG | 0.515471 | 5_1:+52884049 | Msa0736440:CDS |
| GTTCTTGGCTTGCCAGACAC+TGG | 0.515609 | 5_1:+52885372 | Msa0736440:CDS |
| ATCAGAAGTACTCCAAGCTC+CGG | 0.522664 | 5_1:+52885257 | Msa0736440:CDS |
| GTTATTGGAAATTACACGGA+TGG | 0.522848 | 5_1:+52886307 | Msa0736440:CDS |
| AGCTCCGGATCCAGTGAACC+TGG | 0.523112 | 5_1:+52885272 | Msa0736440:CDS |
| TTCCACATTGATCCTCTCAA+TGG | 0.523550 | 5_1:+52887842 | Msa0736440:CDS |
| GGCAAAAGCACAGACTATAG+TGG | 0.530206 | 5_1:+52884672 | Msa0736440:CDS |
| TTTGCTAAGTACCTAGAGAA+AGG | 0.536077 | 5_1:+52883557 | Msa0736440:CDS |
| CCTTGATTAGTAGCAAAAGT+TGG | 0.536164 | 5_1:-52887782 | None:intergenic |
| ATTACCTCAAATTCAAGGAA+AGG | 0.536681 | 5_1:+52884048 | Msa0736440:CDS |
| TTGGTGAACCTTGTCATAGT+TGG | 0.540805 | 5_1:+52887518 | Msa0736440:CDS |
| CTCGGCTGCAAAGCTTCAGA+TGG | 0.543389 | 5_1:+52884862 | Msa0736440:CDS |
| TCGATGCATTGCTGACTCAA+AGG | 0.544831 | 5_1:+52887688 | Msa0736440:CDS |
| GAAACAACTCTACATAGGCC+TGG | 0.545252 | 5_1:-52886793 | None:intergenic |
| CTCTCAAACAACAAGGCTCT+AGG | 0.545501 | 5_1:+52888435 | Msa0736440:CDS |
| GAAGATATATGCAAACAAGT+TGG | 0.545929 | 5_1:+52888136 | Msa0736440:CDS |
| TTATAAACCAATATATAAGA+AGG | 0.546347 | 5_1:-52889187 | None:intergenic |
| TCATGAATTAATGGAAGAAG+TGG | 0.551105 | 5_1:+52883598 | Msa0736440:CDS |
| CTTAACATTGACAGGTAACA+AGG | 0.552130 | 5_1:+52885862 | Msa0736440:intron |
| GATGTTGTGAAGAACTTAAG+TGG | 0.553221 | 5_1:+52887455 | Msa0736440:CDS |
| TTCAAAATCAAAAGATAGAG+AGG | 0.553369 | 5_1:+52887556 | Msa0736440:CDS |
| CTTGGCTTGCCAGACACTGG+TGG | 0.554446 | 5_1:+52885375 | Msa0736440:CDS |
| TAGGCCTAATCCAGGAGTCT+GGG | 0.556349 | 5_1:+52883971 | Msa0736440:CDS |
| TTTCCAGGTTGAAGGAGTGG+GGG | 0.558404 | 5_1:+52885178 | Msa0736440:intron |
| TATAAACTCAGAAATAATGA+TGG | 0.559092 | 5_1:-52883395 | None:intergenic |
| TTGTTGAAACTAAATCATCA+TGG | 0.559548 | 5_1:+52884700 | Msa0736440:CDS |
| AACTAAAGGGACAATTCAGA+TGG | 0.563580 | 5_1:+52887624 | Msa0736440:CDS |
| ATTGGACCAAGTCAAGGCAT+TGG | 0.563812 | 5_1:+52885705 | Msa0736440:CDS |
| TTATCTTGAGAGGTTTACTC+AGG | 0.564285 | 5_1:+52886028 | Msa0736440:CDS |
| TCATTTCCAGGTTGAAGGAG+TGG | 0.564746 | 5_1:+52885175 | Msa0736440:intron |
| TTTGCAATTAGGCCTAATCC+AGG | 0.566483 | 5_1:+52883963 | Msa0736440:CDS |
| CAATAATCTTCTCGATGGCA+AGG | 0.566855 | 5_1:+52887429 | Msa0736440:CDS |
| CACTAATGGCTAGAAAACTT+GGG | 0.568038 | 5_1:+52886344 | Msa0736440:CDS |
| GATAAATGACACGTTGAGCT+CGG | 0.568356 | 5_1:+52884844 | Msa0736440:CDS |
| TTGCTAAGTACCTAGAGAAA+GGG | 0.568510 | 5_1:+52883558 | Msa0736440:CDS |
| ATTGCAAAGGCTACATATGG+TGG | 0.571806 | 5_1:-52883948 | None:intergenic |
| CCAAATGCTTCATACAAAGC+AGG | 0.573499 | 5_1:-52887725 | None:intergenic |
| GATTGCAGCGCATAAATGAA+TGG | 0.573820 | 5_1:+52887948 | Msa0736440:CDS |
| ACATTTACCCTTATCTTGAG+AGG | 0.575762 | 5_1:+52886018 | Msa0736440:CDS |
| GAATAAGAGACTAAGAAACT+TGG | 0.575984 | 5_1:+52887499 | Msa0736440:CDS |
| CTTTATATTGAGCTCTACAC+AGG | 0.580216 | 5_1:+52883676 | Msa0736440:CDS |
| TGTCGAAGCGAGAAACCCAT+TGG | 0.584554 | 5_1:-52885998 | None:intergenic |
| TCTTAACTTCAAGGACAACT+GGG | 0.587344 | 5_1:+52884644 | Msa0736440:CDS |
| TGGAACGTGATTTCTGCGGC+CGG | 0.591424 | 5_1:+52887926 | Msa0736440:CDS |
| ATGGGGAGATAATGCAGGAA+GGG | 0.592050 | 5_1:+52885212 | Msa0736440:CDS |
| AAATCACGTTCCAATATGAT+GGG | 0.592482 | 5_1:-52887916 | None:intergenic |
| GAAACCAATAATCTTCTCGA+TGG | 0.592864 | 5_1:+52887424 | Msa0736440:CDS |
| TTACACGGATGGAAATTTGG+TGG | 0.593594 | 5_1:+52886318 | Msa0736440:CDS |
| GTGGATATCTAGCGGAGAAG+AGG | 0.595948 | 5_1:+52887402 | Msa0736440:intron |
| TCTTGTTATTGGAAATTACA+CGG | 0.599171 | 5_1:+52886303 | Msa0736440:CDS |
| TTACATATTGGACCAAGTCA+AGG | 0.599602 | 5_1:+52885699 | Msa0736440:CDS |
| GATGGGGAGATAATGCAGGA+AGG | 0.601426 | 5_1:+52885211 | Msa0736440:CDS |
| TAGAAAACTTGGGATAACTC+AGG | 0.607985 | 5_1:+52886354 | Msa0736440:CDS |
| CAAACAAGTTGGTAAATATG+GGG | 0.608146 | 5_1:+52888147 | Msa0736440:CDS |
| TAGAGGAACTAAGTGCCACC+AGG | 0.609338 | 5_1:+52885899 | Msa0736440:CDS |
| TTCTACGAATTAAGCAACAA+GGG | 0.612297 | 5_1:+52885740 | Msa0736440:CDS |
| TGGATTAGGCCTAATTGCAA+AGG | 0.614592 | 5_1:-52883961 | None:intergenic |
| ATTTCCAATTGAAGAAGACA+AGG | 0.616302 | 5_1:-52884599 | None:intergenic |
| CTCAGAGGACCTCTCTGTTG+AGG | 0.621036 | 5_1:+52884010 | Msa0736440:CDS |
| GGTGAAGCTATATTGAACTT+GGG | 0.621197 | 5_1:-52886835 | None:intergenic |
| AGTACCTAGAGAAAGGGAGA+AGG | 0.621869 | 5_1:+52883564 | Msa0736440:CDS |
| AGTTAACAAAGAGCAAAATG+AGG | 0.623039 | 5_1:+52888193 | Msa0736440:CDS |
| ATTCTACGAATTAAGCAACA+AGG | 0.623563 | 5_1:+52885739 | Msa0736440:CDS |
| ATGTTGTGAAGAACTTAAGT+GGG | 0.624389 | 5_1:+52887456 | Msa0736440:CDS |
| TGAATAAAATGATGTGTCTG+AGG | 0.626455 | 5_1:+52889275 | Msa0736440:three_prime_UTR |
| GATGAACCTCCAAAACCAGT+TGG | 0.627880 | 5_1:+52888401 | Msa0736440:CDS |
| CAACCAACTCTCAAACAACA+AGG | 0.628977 | 5_1:+52888428 | Msa0736440:CDS |
| AGAGGAGATCTTCAATAGCA+GGG | 0.629949 | 5_1:-52886921 | None:intergenic |
| TCCCAGAAACAACTCTACAT+AGG | 0.630829 | 5_1:-52886798 | None:intergenic |
| CTCCAACACATACCTTGAAG+CGG | 0.632080 | 5_1:+52883468 | Msa0736440:CDS |
| AAGGTATATATATACATCAG+AGG | 0.633897 | 5_1:-52889168 | None:intergenic |
| AAGTTCAATATAGCTTCACC+TGG | 0.636766 | 5_1:+52886838 | Msa0736440:CDS |
| TAGATACTTTGATCAGCACC+AGG | 0.643107 | 5_1:-52886856 | None:intergenic |
| GAATTTGAGGTAATCTGTGG+GGG | 0.644323 | 5_1:-52884039 | None:intergenic |
| CTGGAAGAGTAAATGCAGCA+TGG | 0.646190 | 5_1:-52886774 | None:intergenic |
| TGATTGGTTCAAACTCCTGG+TGG | 0.652035 | 5_1:-52885914 | None:intergenic |
| TGAATTTGAGGTAATCTGTG+GGG | 0.661174 | 5_1:-52884040 | None:intergenic |
| TGGAAACAGTGGATATCTAG+CGG | 0.672264 | 5_1:+52887394 | Msa0736440:intron |
| CGTACCAAGAAATTGCTGGA+AGG | 0.676732 | 5_1:+52886617 | Msa0736440:CDS |
| CTCCATTGAGAGGATCAATG+TGG | 0.693616 | 5_1:-52887844 | None:intergenic |
| GTCATTGAAGCAATGAACTG+TGG | 0.697770 | 5_1:+52887755 | Msa0736440:CDS |
| GTATGTACGTGTCAACTCAG+AGG | 0.705934 | 5_1:+52883995 | Msa0736440:CDS |
| ATATTGGAACGTGATTTCTG+CGG | 0.707520 | 5_1:+52887922 | Msa0736440:CDS |
| AGAAGCCACCAACTATGACA+AGG | 0.713700 | 5_1:-52887526 | None:intergenic |
| CAGACTGATCGATATCGCAA+CGG | 0.715302 | 5_1:+52887656 | Msa0736440:CDS |
| GGGTGATAGCCTCAACAGAG+AGG | 0.723003 | 5_1:-52884019 | None:intergenic |
| AGGTTGATACCTGATGCTAG+AGG | 0.743701 | 5_1:+52885882 | Msa0736440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATATTTTGTCTAAT+AGG | + | chr5_1:52883701-52883720 | Msa0736440:intron | 10.0% |
| !! | AACAAATATTAATAAATGAA+AGG | - | chr5_1:52886656-52886675 | None:intergenic | 10.0% |
| !! | TAGATTTATTTATATAATCT+TGG | + | chr5_1:52889002-52889021 | Msa0736440:intron | 10.0% |
| !!! | AAATGAAAGAAATTATGTTT+TGG | + | chr5_1:52883640-52883659 | Msa0736440:CDS | 15.0% |
| !!! | TTAACATTTTCTATATTGTA+GGG | + | chr5_1:52884513-52884532 | Msa0736440:intron | 15.0% |
| !! | TTATTAATTGTCTATTAAAG+AGG | + | chr5_1:52884964-52884983 | Msa0736440:intron | 15.0% |
| !! | AATATTGAAAGAAAAACTAA+AGG | - | chr5_1:52886398-52886417 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTCAATATTTTTG+TGG | + | chr5_1:52886402-52886421 | Msa0736440:intron | 15.0% |
| !!! | ATTCACTTTTGAAATTATTA+TGG | + | chr5_1:52887374-52887393 | Msa0736440:intron | 15.0% |
| !! | ATAAGAAATTATAGAACATA+TGG | - | chr5_1:52888235-52888254 | None:intergenic | 15.0% |
| !! | TAATTTCTTATTCAAGAATT+TGG | + | chr5_1:52888244-52888263 | Msa0736440:CDS | 15.0% |
| !! | CAAATAAGAAAATATTGTTT+CGG | + | chr5_1:52888514-52888533 | Msa0736440:intron | 15.0% |
| !! | TGTTAAATACATATTTAAGT+TGG | + | chr5_1:52888829-52888848 | Msa0736440:intron | 15.0% |
| !! | ACAAAAATAGAAAGAATTTA+CGG | - | chr5_1:52888856-52888875 | None:intergenic | 15.0% |
| !! | ATATATACCTTCTTATATAT+TGG | + | chr5_1:52889180-52889199 | Msa0736440:three_prime_UTR | 15.0% |
| !! | TTATAAACCAATATATAAGA+AGG | - | chr5_1:52889190-52889209 | None:intergenic | 15.0% |
| !! | TATAAACTCAGAAATAATGA+TGG | - | chr5_1:52883398-52883417 | None:intergenic | 20.0% |
| !! | TATCTCTTAATTTCTTTCAA+TGG | + | chr5_1:52883445-52883464 | Msa0736440:exon | 20.0% |
| !!! | CTTAACATTTTCTATATTGT+AGG | + | chr5_1:52884512-52884531 | Msa0736440:intron | 20.0% |
| !! | AACATAGCTAAAAACAAATT+TGG | - | chr5_1:52884990-52885009 | None:intergenic | 20.0% |
| !! | ATTAAAATTAATGTTCCTCA+TGG | - | chr5_1:52885417-52885436 | None:intergenic | 20.0% |
| !! | TATAAGTATCAAGTAGTATA+AGG | + | chr5_1:52885437-52885456 | Msa0736440:intron | 20.0% |
| !!! | ATACTTTGGTTGATATTAAT+AGG | + | chr5_1:52886237-52886256 | Msa0736440:intron | 20.0% |
| !! | TGTTATCTACTTTATTAAAG+AGG | - | chr5_1:52886942-52886961 | None:intergenic | 20.0% |
| !! | AAAAGTGAATATCAATCATT+TGG | - | chr5_1:52887364-52887383 | None:intergenic | 20.0% |
| !! | AATTGAAAAACATCAACTAA+AGG | + | chr5_1:52887610-52887629 | Msa0736440:CDS | 20.0% |
| !! | ATTGAAAAACATCAACTAAA+GGG | + | chr5_1:52887611-52887630 | Msa0736440:CDS | 20.0% |
| !!! | ATTAAAGCGTCTTATAAAAA+TGG | - | chr5_1:52888009-52888028 | None:intergenic | 20.0% |
| !!! | AAAATTAATTTTCTTGCTGA+TGG | - | chr5_1:52888080-52888099 | None:intergenic | 20.0% |
| !! | AAAACTCATTATGCAATAAT+TGG | - | chr5_1:52888309-52888328 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTAGAATTTGAG+AGG | + | chr5_1:52888472-52888491 | Msa0736440:intron | 20.0% |
| !! | AGATATGATTTACCATATAA+AGG | - | chr5_1:52888594-52888613 | None:intergenic | 20.0% |
| !! | AGAAACACATAAATCTTATA+AGG | - | chr5_1:52888678-52888697 | None:intergenic | 20.0% |
| !! | TTATAAGATTTATGTGTTTC+TGG | + | chr5_1:52888677-52888696 | Msa0736440:intron | 20.0% |
| ! | CATGAAACTTCATGAATTAA+TGG | + | chr5_1:52883589-52883608 | Msa0736440:CDS | 25.0% |
| !!! | TGAAAGAAATTATGTTTTGG+AGG | + | chr5_1:52883643-52883662 | Msa0736440:CDS | 25.0% |
| !!! | GAAAGAAATTATGTTTTGGA+GGG | + | chr5_1:52883644-52883663 | Msa0736440:CDS | 25.0% |
| !!! | TTTTTGATTACTCAATGTGT+TGG | - | chr5_1:52883834-52883853 | None:intergenic | 25.0% |
| !!! | TTAGCCTTTGAATTTTAATG+TGG | + | chr5_1:52883893-52883912 | Msa0736440:intron | 25.0% |
| ! | CTGTTTGAATATCTTATGTA+AGG | + | chr5_1:52884145-52884164 | Msa0736440:intron | 25.0% |
| !! | GTTAAGTGAATCTATCTTTT+TGG | - | chr5_1:52884479-52884498 | None:intergenic | 25.0% |
| ! | AATGTTAAGCATCAAAAACA+AGG | - | chr5_1:52884501-52884520 | None:intergenic | 25.0% |
| ! | TTTCAAAGTTCTTAACTTCA+AGG | + | chr5_1:52884635-52884654 | Msa0736440:CDS | 25.0% |
| ! | TTGTTGAAACTAAATCATCA+TGG | + | chr5_1:52884700-52884719 | Msa0736440:CDS | 25.0% |
| ! | AAAGAATATGTAACTGTTGT+TGG | - | chr5_1:52884777-52884796 | None:intergenic | 25.0% |
| !!! | TTTTGATATGAAGTGTCTTT+TGG | - | chr5_1:52884923-52884942 | None:intergenic | 25.0% |
| ! | CATATCAAAAATTTGAGCTA+AGG | + | chr5_1:52884933-52884952 | Msa0736440:CDS | 25.0% |
| ! | ATCACTACTTTGAATATTGT+TGG | - | chr5_1:52885318-52885337 | None:intergenic | 25.0% |
| !!! | TAGTATAAGGTTTTAAATCG+CGG | + | chr5_1:52885450-52885469 | Msa0736440:intron | 25.0% |
| ! | GTTAGAAAGGAAAACAAATT+TGG | - | chr5_1:52885653-52885672 | None:intergenic | 25.0% |
| !! | TTTTAAACCTCAAATTCTTG+TGG | + | chr5_1:52885768-52885787 | Msa0736440:CDS | 25.0% |
| ! | TAATTTCCAATAACAAGATC+TGG | - | chr5_1:52886301-52886320 | None:intergenic | 25.0% |
| !!! | TCTTGTTATTGGAAATTACA+CGG | + | chr5_1:52886303-52886322 | Msa0736440:CDS | 25.0% |
| ! | TGTACTTGTGATTGAAAATT+AGG | + | chr5_1:52886450-52886469 | Msa0736440:intron | 25.0% |
| !! | TTTTGTCTTTTTCTGTGTAA+GGG | - | chr5_1:52886885-52886904 | None:intergenic | 25.0% |
| ! | TTACAACAAAAACTAGTATG+GGG | - | chr5_1:52887078-52887097 | None:intergenic | 25.0% |
| ! | CTTACAACAAAAACTAGTAT+GGG | - | chr5_1:52887079-52887098 | None:intergenic | 25.0% |
| !!! | CATACTAGTTTTTGTTGTAA+GGG | + | chr5_1:52887078-52887097 | Msa0736440:intron | 25.0% |
| ! | TACTATCTTAGAATTTGAGT+TGG | - | chr5_1:52887115-52887134 | None:intergenic | 25.0% |
| !!! | TTTACAAACTGGTTTTGTAA+GGG | + | chr5_1:52887277-52887296 | Msa0736440:intron | 25.0% |
| !! | GAAAGTCTTAAATTTTTGCT+TGG | - | chr5_1:52887313-52887332 | None:intergenic | 25.0% |
| ! | TGAAATTATTATGGAAACAG+TGG | + | chr5_1:52887383-52887402 | Msa0736440:intron | 25.0% |
| !!! | CTCTATCTTTTGATTTTGAA+GGG | - | chr5_1:52887556-52887575 | None:intergenic | 25.0% |
| !!! | TCTCTATCTTTTGATTTTGA+AGG | - | chr5_1:52887557-52887576 | None:intergenic | 25.0% |
| ! | TTCAAAATCAAAAGATAGAG+AGG | + | chr5_1:52887556-52887575 | Msa0736440:CDS | 25.0% |
| ! | GAATAATCTCAACCTTTATA+TGG | + | chr5_1:52888579-52888598 | Msa0736440:intron | 25.0% |
| ! | TGTTAGCATGAAAAATCAAA+TGG | - | chr5_1:52888915-52888934 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTCCTTTTCTTCT+TGG | + | chr5_1:52888940-52888959 | Msa0736440:intron | 25.0% |
| !! | TAAATCTAACCTTTTCAATG+TGG | - | chr5_1:52888990-52889009 | None:intergenic | 25.0% |
| !!! | AGCAAGTGTTTTTTTTAGTA+AGG | - | chr5_1:52889057-52889076 | None:intergenic | 25.0% |
| ! | AAGGTATATATATACATCAG+AGG | - | chr5_1:52889171-52889190 | None:intergenic | 25.0% |
| TCATGAATTAATGGAAGAAG+TGG | + | chr5_1:52883598-52883617 | Msa0736440:CDS | 30.0% | |
| TGCACCACATTAAAATTCAA+AGG | - | chr5_1:52883900-52883919 | None:intergenic | 30.0% | |
| ! | TTGAATTTGAGGTAATCTGT+GGG | - | chr5_1:52884044-52884063 | None:intergenic | 30.0% |
| ATTACCTCAAATTCAAGGAA+AGG | + | chr5_1:52884048-52884067 | Msa0736440:CDS | 30.0% | |
| TTACCTCAAATTCAAGGAAA+GGG | + | chr5_1:52884049-52884068 | Msa0736440:CDS | 30.0% | |
| ! | GAGAAATGACATACCATTTT+TGG | - | chr5_1:52884082-52884101 | None:intergenic | 30.0% |
| ! | AAGCGGTCTTTTATAAACAT+CGG | - | chr5_1:52884286-52884305 | None:intergenic | 30.0% |
| !! | AGTGAATCTATCTTTTTGGT+AGG | - | chr5_1:52884475-52884494 | None:intergenic | 30.0% |
| !! | ACTTTGGAGCATTTGATATT+GGG | + | chr5_1:52884563-52884582 | Msa0736440:CDS | 30.0% |
| GAAGAAGACAAGGTTAATTT+AGG | - | chr5_1:52884592-52884611 | None:intergenic | 30.0% | |
| TTAACCTTGTCTTCTTCAAT+TGG | + | chr5_1:52884595-52884614 | Msa0736440:CDS | 30.0% | |
| ATTTCCAATTGAAGAAGACA+AGG | - | chr5_1:52884602-52884621 | None:intergenic | 30.0% | |
| TTGTCTTCTTCAATTGGAAA+TGG | + | chr5_1:52884601-52884620 | Msa0736440:CDS | 30.0% | |
| TACAATTCTTCGCAATATCA+AGG | - | chr5_1:52885036-52885055 | None:intergenic | 30.0% | |
| ACATAAGATTGTTTATGTCG+CGG | - | chr5_1:52885085-52885104 | None:intergenic | 30.0% | |
| AATGTCTGTGATCAAAATTC+AGG | - | chr5_1:52885113-52885132 | None:intergenic | 30.0% | |
| TGGAAATGAAATTGGCATTA+GGG | - | chr5_1:52885164-52885183 | None:intergenic | 30.0% | |
| AAAAATATTTCCAGGTTCAC+TGG | - | chr5_1:52885285-52885304 | None:intergenic | 30.0% | |
| TTCTGCTGAAAAATATTTCC+AGG | - | chr5_1:52885293-52885312 | None:intergenic | 30.0% | |
| ! | TTCTCAGTTCATGGTTATTT+TGG | + | chr5_1:52885339-52885358 | Msa0736440:CDS | 30.0% |
| !! | TCTCAGTTCATGGTTATTTT+GGG | + | chr5_1:52885340-52885359 | Msa0736440:CDS | 30.0% |
| TGCATTGTGATTCTAAACAT+TGG | + | chr5_1:52885494-52885513 | Msa0736440:intron | 30.0% | |
| ! | TTTTGCAACAAGTGTTAGAA+AGG | - | chr5_1:52885666-52885685 | None:intergenic | 30.0% |
| ACAACAGGTAGTTTACATAT+TGG | + | chr5_1:52885687-52885706 | Msa0736440:intron | 30.0% | |
| ATTCTACGAATTAAGCAACA+AGG | + | chr5_1:52885739-52885758 | Msa0736440:CDS | 30.0% | |
| TTCTACGAATTAAGCAACAA+GGG | + | chr5_1:52885740-52885759 | Msa0736440:CDS | 30.0% | |
| ! | TCTAAGTTTCAAGTAGAAAG+AGG | - | chr5_1:52885816-52885835 | None:intergenic | 30.0% |
| ATTCCTTTCTCTGTATGAAA+AGG | - | chr5_1:52885972-52885991 | None:intergenic | 30.0% | |
| TACTGTAAGATAAAAGTTCG+CGG | - | chr5_1:52886131-52886150 | None:intergenic | 30.0% | |
| !! | CAAAGAATAGTTCTAAACAG+CGG | - | chr5_1:52886181-52886200 | None:intergenic | 30.0% |
| TTTCCTTCTTACGAATACTT+TGG | + | chr5_1:52886223-52886242 | Msa0736440:intron | 30.0% | |
| ! | AACCAAAATTTTGGACCTAA+TGG | + | chr5_1:52886267-52886286 | Msa0736440:CDS | 30.0% |
| ! | TTCCATTAGGTCCAAAATTT+TGG | - | chr5_1:52886272-52886291 | None:intergenic | 30.0% |
| ! | AAAATTTTGGACCTAATGGA+AGG | + | chr5_1:52886271-52886290 | Msa0736440:CDS | 30.0% |
| ! | AAATTTTGGACCTAATGGAA+GGG | + | chr5_1:52886272-52886291 | Msa0736440:CDS | 30.0% |
| AAATTACACGGATGGAAATT+TGG | + | chr5_1:52886315-52886334 | Msa0736440:CDS | 30.0% | |
| !! | TCAATATTTTTGTGGCTGAA+AGG | + | chr5_1:52886410-52886429 | Msa0736440:intron | 30.0% |
| TGACATGAGAAGTGATATTT+AGG | - | chr5_1:52886544-52886563 | None:intergenic | 30.0% | |
| ! | CTTTTGTCTTTTTCTGTGTA+AGG | - | chr5_1:52886886-52886905 | None:intergenic | 30.0% |
| AAAGTTTAATGTGCAAGTGT+GGG | - | chr5_1:52886990-52887009 | None:intergenic | 30.0% | |
| AAAAGTTTAATGTGCAAGTG+TGG | - | chr5_1:52886991-52887010 | None:intergenic | 30.0% | |
| CCTTACAACAAAAACTAGTA+TGG | - | chr5_1:52887080-52887099 | None:intergenic | 30.0% | |
| !!! | CCATACTAGTTTTTGTTGTA+AGG | + | chr5_1:52887077-52887096 | Msa0736440:intron | 30.0% |
| !!! | CTTTACAAACTGGTTTTGTA+AGG | + | chr5_1:52887276-52887295 | Msa0736440:intron | 30.0% |
| ATGTTGTGAAGAACTTAAGT+GGG | + | chr5_1:52887456-52887475 | Msa0736440:CDS | 30.0% | |
| GAATAAGAGACTAAGAAACT+TGG | + | chr5_1:52887499-52887518 | Msa0736440:CDS | 30.0% | |
| ATCAAAAGATAGAGAGGAAA+TGG | + | chr5_1:52887562-52887581 | Msa0736440:CDS | 30.0% | |
| AAATCACGTTCCAATATGAT+GGG | - | chr5_1:52887919-52887938 | None:intergenic | 30.0% | |
| CTTTATCTTGTAGCTATACA+TGG | + | chr5_1:52888114-52888133 | Msa0736440:intron | 30.0% | |
| GAAGATATATGCAAACAAGT+TGG | + | chr5_1:52888136-52888155 | Msa0736440:CDS | 30.0% | |
| !! | TGCAAACAAGTTGGTAAATA+TGG | + | chr5_1:52888145-52888164 | Msa0736440:CDS | 30.0% |
| !! | GCAAACAAGTTGGTAAATAT+GGG | + | chr5_1:52888146-52888165 | Msa0736440:CDS | 30.0% |
| !! | CAAACAAGTTGGTAAATATG+GGG | + | chr5_1:52888147-52888166 | Msa0736440:CDS | 30.0% |
| !! | TTTGTTAACTTGCTTCCAAA+AGG | - | chr5_1:52888183-52888202 | None:intergenic | 30.0% |
| AGTTAACAAAGAGCAAAATG+AGG | + | chr5_1:52888193-52888212 | Msa0736440:CDS | 30.0% | |
| ! | GAATTTGGTTAGTCAATGTT+TGG | + | chr5_1:52888259-52888278 | Msa0736440:intron | 30.0% |
| CGAGTGTATATAGTCTAATT+TGG | - | chr5_1:52888642-52888661 | None:intergenic | 30.0% | |
| CATATGTATGAATGTCAAGT+CGG | + | chr5_1:52888783-52888802 | Msa0736440:intron | 30.0% | |
| ! | CAATTTTCTTAACTGCACAA+AGG | - | chr5_1:52888888-52888907 | None:intergenic | 30.0% |
| TGAATAAAATGATGTGTCTG+AGG | + | chr5_1:52889275-52889294 | Msa0736440:three_prime_UTR | 30.0% | |
| TAAAGAATTTGTCCGCTTCA+AGG | - | chr5_1:52883483-52883502 | None:intergenic | 35.0% | |
| ! | TAGCAAAGCACTTCTTCATA+TGG | - | chr5_1:52883544-52883563 | None:intergenic | 35.0% |
| TTTGCTAAGTACCTAGAGAA+AGG | + | chr5_1:52883557-52883576 | Msa0736440:CDS | 35.0% | |
| TTGCTAAGTACCTAGAGAAA+GGG | + | chr5_1:52883558-52883577 | Msa0736440:CDS | 35.0% | |
| !!! | TATGTTTTGGAGGGAAATCT+TGG | + | chr5_1:52883653-52883672 | Msa0736440:CDS | 35.0% |
| CTTTATATTGAGCTCTACAC+AGG | + | chr5_1:52883676-52883695 | Msa0736440:CDS | 35.0% | |
| CTAATTGCAAAGGCTACATA+TGG | - | chr5_1:52883954-52883973 | None:intergenic | 35.0% | |
| CATATGTAGCCTTTGCAATT+AGG | + | chr5_1:52883952-52883971 | Msa0736440:CDS | 35.0% | |
| ! | TGAATTTGAGGTAATCTGTG+GGG | - | chr5_1:52884043-52884062 | None:intergenic | 35.0% |
| ! | CTTGAATTTGAGGTAATCTG+TGG | - | chr5_1:52884045-52884064 | None:intergenic | 35.0% |
| CACAGATTACCTCAAATTCA+AGG | + | chr5_1:52884043-52884062 | Msa0736440:CDS | 35.0% | |
| ! | AAAGGGTGTATGACCAAAAA+TGG | + | chr5_1:52884066-52884085 | Msa0736440:CDS | 35.0% |
| CTAATTGTGACACAAAGAGT+TGG | - | chr5_1:52884217-52884236 | None:intergenic | 35.0% | |
| TGTCACAATTAGCAGATAAC+TGG | + | chr5_1:52884225-52884244 | Msa0736440:intron | 35.0% | |
| TTTATAAAAGACCGCTTGCT+AGG | + | chr5_1:52884289-52884308 | Msa0736440:intron | 35.0% | |
| AGCTACTAACTAATCTTTCG+AGG | - | chr5_1:52884345-52884364 | None:intergenic | 35.0% | |
| ! | AATGCATTTGAAGCAGACTT+TGG | + | chr5_1:52884547-52884566 | Msa0736440:CDS | 35.0% |
| !! | GACTTTGGAGCATTTGATAT+TGG | + | chr5_1:52884562-52884581 | Msa0736440:CDS | 35.0% |
| TTCTTAACTTCAAGGACAAC+TGG | + | chr5_1:52884643-52884662 | Msa0736440:CDS | 35.0% | |
| TCTTAACTTCAAGGACAACT+GGG | + | chr5_1:52884644-52884663 | Msa0736440:CDS | 35.0% | |
| AATCATCATGGAGAAGTAAG+TGG | + | chr5_1:52884712-52884731 | Msa0736440:intron | 35.0% | |
| CTGGAAATGAAATTGGCATT+AGG | - | chr5_1:52885165-52885184 | None:intergenic | 35.0% | |
| CTAATGCCAATTTCATTTCC+AGG | + | chr5_1:52885163-52885182 | Msa0736440:intron | 35.0% | |
| CTTCAACCTGGAAATGAAAT+TGG | - | chr5_1:52885172-52885191 | None:intergenic | 35.0% | |
| ! | CAATTTCATTTCCAGGTTGA+AGG | + | chr5_1:52885170-52885189 | Msa0736440:intron | 35.0% |
| ! | CTCATGGTAGAAATTTTACC+TGG | - | chr5_1:52885401-52885420 | None:intergenic | 35.0% |
| CAGGTAAAATTTCTACCATG+AGG | + | chr5_1:52885399-52885418 | Msa0736440:intron | 35.0% | |
| TCACAATGCAATAGAGATCA+TGG | - | chr5_1:52885484-52885503 | None:intergenic | 35.0% | |
| CGAGGTTTAAGAAAGATTTG+CGG | - | chr5_1:52885585-52885604 | None:intergenic | 35.0% | |
| ! | TTCAATTTGAAGTAGAGACG+AGG | - | chr5_1:52885603-52885622 | None:intergenic | 35.0% |
| ! | CACTTGTTGCAAAAAACAAC+AGG | + | chr5_1:52885672-52885691 | Msa0736440:intron | 35.0% |
| TTACATATTGGACCAAGTCA+AGG | + | chr5_1:52885699-52885718 | Msa0736440:CDS | 35.0% | |
| AGCATACTCTTAACATTGAC+AGG | + | chr5_1:52885854-52885873 | Msa0736440:intron | 35.0% | |
| CTTAACATTGACAGGTAACA+AGG | + | chr5_1:52885862-52885881 | Msa0736440:intron | 35.0% | |
| GAGTGTTTGGTATCATTGAT+TGG | - | chr5_1:52885933-52885952 | None:intergenic | 35.0% | |
| ACATTTACCCTTATCTTGAG+AGG | + | chr5_1:52886018-52886037 | Msa0736440:CDS | 35.0% | |
| GAGTAAACCTCTCAAGATAA+GGG | - | chr5_1:52886028-52886047 | None:intergenic | 35.0% | |
| TGAGTAAACCTCTCAAGATA+AGG | - | chr5_1:52886029-52886048 | None:intergenic | 35.0% | |
| TTATCTTGAGAGGTTTACTC+AGG | + | chr5_1:52886028-52886047 | Msa0736440:CDS | 35.0% | |
| !!! | TTCACGGTTTTTTACCTTGT+AGG | + | chr5_1:52886064-52886083 | Msa0736440:intron | 35.0% |
| AGAAGGAAAGTTCATAAGAG+TGG | - | chr5_1:52886212-52886231 | None:intergenic | 35.0% | |
| ! | CAACCAAAGTATTCGTAAGA+AGG | - | chr5_1:52886229-52886248 | None:intergenic | 35.0% |
| ! | GGATGCAACAACCAAAATTT+TGG | + | chr5_1:52886258-52886277 | Msa0736440:intron | 35.0% |
| GTTATTGGAAATTACACGGA+TGG | + | chr5_1:52886307-52886326 | Msa0736440:CDS | 35.0% | |
| ! | AAATTTGGTGGCATCACTAA+TGG | + | chr5_1:52886330-52886349 | Msa0736440:CDS | 35.0% |
| TCACTAATGGCTAGAAAACT+TGG | + | chr5_1:52886343-52886362 | Msa0736440:CDS | 35.0% | |
| CACTAATGGCTAGAAAACTT+GGG | + | chr5_1:52886344-52886363 | Msa0736440:CDS | 35.0% | |
| TAGAAAACTTGGGATAACTC+AGG | + | chr5_1:52886354-52886373 | Msa0736440:CDS | 35.0% | |
| ATGAAGACTCAGATGTTAAG+TGG | + | chr5_1:52886506-52886525 | Msa0736440:CDS | 35.0% | |
| TCACTTCTCATGTCAATTCA+TGG | + | chr5_1:52886549-52886568 | Msa0736440:CDS | 35.0% | |
| !! | CGTACTGGTTATGATGAAAT+CGG | - | chr5_1:52886599-52886618 | None:intergenic | 35.0% |
| GGTGAAGCTATATTGAACTT+GGG | - | chr5_1:52886838-52886857 | None:intergenic | 35.0% | |
| AGGTGAAGCTATATTGAACT+TGG | - | chr5_1:52886839-52886858 | None:intergenic | 35.0% | |
| AAGTTCAATATAGCTTCACC+TGG | + | chr5_1:52886838-52886857 | Msa0736440:CDS | 35.0% | |
| TCTGTTAAAAGACTCGTTTG+AGG | + | chr5_1:52887010-52887029 | Msa0736440:intron | 35.0% | |
| ! | TTTGTTGTAAGGGTTGAGTT+AGG | + | chr5_1:52887088-52887107 | Msa0736440:intron | 35.0% |
| GAGTCTACTTAAGATCCAAT+CGG | + | chr5_1:52887138-52887157 | Msa0736440:intron | 35.0% | |
| AGTCTACTTAAGATCCAATC+GGG | + | chr5_1:52887139-52887158 | Msa0736440:intron | 35.0% | |
| ! | CCACTTACAAACACATTTTC+AGG | - | chr5_1:52887243-52887262 | None:intergenic | 35.0% |
| CCTGAAAATGTGTTTGTAAG+TGG | + | chr5_1:52887240-52887259 | Msa0736440:intron | 35.0% | |
| GAAAATGTGTTTGTAAGTGG+CGG | + | chr5_1:52887243-52887262 | Msa0736440:intron | 35.0% | |
| CAAAACCAGTTTGTAAAGTG+AGG | - | chr5_1:52887274-52887293 | None:intergenic | 35.0% | |
| GAAACCAATAATCTTCTCGA+TGG | + | chr5_1:52887424-52887443 | Msa0736440:CDS | 35.0% | |
| GATGTTGTGAAGAACTTAAG+TGG | + | chr5_1:52887455-52887474 | Msa0736440:CDS | 35.0% | |
| !! | ACTTAAGTGGGTTAGTTGAA+TGG | + | chr5_1:52887468-52887487 | Msa0736440:CDS | 35.0% |
| AACTAAAGGGACAATTCAGA+TGG | + | chr5_1:52887624-52887643 | Msa0736440:CDS | 35.0% | |
| CCTTGATTAGTAGCAAAAGT+TGG | - | chr5_1:52887785-52887804 | None:intergenic | 35.0% | |
| ! | CCAACTTTTGCTACTAATCA+AGG | + | chr5_1:52887782-52887801 | Msa0736440:CDS | 35.0% |
| ! | ACTTTTGCTACTAATCAAGG+AGG | + | chr5_1:52887785-52887804 | Msa0736440:CDS | 35.0% |
| !! | CCATCAACAATTATTTCTGC+TGG | - | chr5_1:52887812-52887831 | None:intergenic | 35.0% |
| CCAGCAGAAATAATTGTTGA+TGG | + | chr5_1:52887809-52887828 | Msa0736440:CDS | 35.0% | |
| !! | ATAATTGTTGATGGTGTCTC+AGG | + | chr5_1:52887818-52887837 | Msa0736440:CDS | 35.0% |
| GAAATCACGTTCCAATATGA+TGG | - | chr5_1:52887920-52887939 | None:intergenic | 35.0% | |
| ATATTGGAACGTGATTTCTG+CGG | + | chr5_1:52887922-52887941 | Msa0736440:CDS | 35.0% | |
| GCGTCTTATAAAAATGGACA+AGG | - | chr5_1:52888003-52888022 | None:intergenic | 35.0% | |
| ! | TGCTGATGGTGTACATAAAA+GGG | - | chr5_1:52888066-52888085 | None:intergenic | 35.0% |
| ! | TTGCTGATGGTGTACATAAA+AGG | - | chr5_1:52888067-52888086 | None:intergenic | 35.0% |
| TTGTGATACGTTAATGTCAC+AGG | + | chr5_1:52888355-52888374 | Msa0736440:intron | 35.0% | |
| ! | GTTTCGGTATAAAGTGTCAT+AGG | + | chr5_1:52888530-52888549 | Msa0736440:intron | 35.0% |
| CGACTTGACATTCATACATA+TGG | - | chr5_1:52888785-52888804 | None:intergenic | 35.0% | |
| GTTCACAATCCACATTGAAA+AGG | + | chr5_1:52888978-52888997 | Msa0736440:CDS | 35.0% | |
| AAAAACACTTGCTTCCTTTC+AGG | + | chr5_1:52889064-52889083 | Msa0736440:intron | 35.0% | |
| !! | CTTCCTTTCAGGTTATTACT+TGG | + | chr5_1:52889075-52889094 | Msa0736440:intron | 35.0% |
| GGTTATTACTTGGAGCTTAA+TGG | + | chr5_1:52889085-52889104 | Msa0736440:intron | 35.0% | |
| ! | TACTCAATGTGTTGGACTAG+TGG | - | chr5_1:52883826-52883845 | None:intergenic | 40.0% |
| ATTGCAAAGGCTACATATGG+TGG | - | chr5_1:52883951-52883970 | None:intergenic | 40.0% | |
| ! | TGGATTAGGCCTAATTGCAA+AGG | - | chr5_1:52883964-52883983 | None:intergenic | 40.0% |
| TTTGCAATTAGGCCTAATCC+AGG | + | chr5_1:52883963-52883982 | Msa0736440:CDS | 40.0% | |
| ! | GAATTTGAGGTAATCTGTGG+GGG | - | chr5_1:52884042-52884061 | None:intergenic | 40.0% |
| ACACCCTTTCCTTGAATTTG+AGG | - | chr5_1:52884055-52884074 | None:intergenic | 40.0% | |
| ! | TAACTGGTCTCTTAAGCATG+TGG | + | chr5_1:52884241-52884260 | Msa0736440:intron | 40.0% |
| CAAAGATCTATGCAAGGAGA+TGG | - | chr5_1:52884320-52884339 | None:intergenic | 40.0% | |
| GAGGTACAAAGATCTATGCA+AGG | - | chr5_1:52884326-52884345 | None:intergenic | 40.0% | |
| TGTTTGTACCATACCACATG+AGG | + | chr5_1:52884416-52884435 | Msa0736440:intron | 40.0% | |
| TTCAAGGACAACTGGGAAAT+TGG | + | chr5_1:52884651-52884670 | Msa0736440:CDS | 40.0% | |
| GATAAATGACACGTTGAGCT+CGG | + | chr5_1:52884844-52884863 | Msa0736440:CDS | 40.0% | |
| !!! | TGTCTTTTGGAATTGCTGAG+AGG | - | chr5_1:52884910-52884929 | None:intergenic | 40.0% |
| GTAGTGATCTTCTCAGTTCA+TGG | + | chr5_1:52885330-52885349 | Msa0736440:CDS | 40.0% | |
| ! | TCTAAACATTGGAGAGCATG+CGG | + | chr5_1:52885505-52885524 | Msa0736440:intron | 40.0% |
| AGACTCACCACAAGAATTTG+AGG | - | chr5_1:52885778-52885797 | None:intergenic | 40.0% | |
| ! | CATTGATTGGTTCAAACTCC+TGG | - | chr5_1:52885920-52885939 | None:intergenic | 40.0% |
| !! | ACGTAGAATGTGAGAGTGTT+TGG | - | chr5_1:52885946-52885965 | None:intergenic | 40.0% |
| ! | GTGCCTTTTCATACAGAGAA+AGG | + | chr5_1:52885966-52885985 | Msa0736440:CDS | 40.0% |
| TACCTTGTAGGCTTGTACTA+TGG | + | chr5_1:52886076-52886095 | Msa0736440:intron | 40.0% | |
| AACCATAGTACAAGCCTACA+AGG | - | chr5_1:52886081-52886100 | None:intergenic | 40.0% | |
| TGTGAACGCAATTACAGTTG+TGG | + | chr5_1:52886154-52886173 | Msa0736440:intron | 40.0% | |
| TTACACGGATGGAAATTTGG+TGG | + | chr5_1:52886318-52886337 | Msa0736440:CDS | 40.0% | |
| AGCAATTTCTTGGTACGTAC+TGG | - | chr5_1:52886614-52886633 | None:intergenic | 40.0% | |
| AGTACGTACCAAGAAATTGC+TGG | + | chr5_1:52886613-52886632 | Msa0736440:CDS | 40.0% | |
| CAAACCTTCCAGCAATTTCT+TGG | - | chr5_1:52886624-52886643 | None:intergenic | 40.0% | |
| ! | TTTTGCAGCAAAGATAGACC+TGG | + | chr5_1:52886739-52886758 | Msa0736440:intron | 40.0% |
| !! | GCCTATGTAGAGTTGTTTCT+GGG | + | chr5_1:52886797-52886816 | Msa0736440:CDS | 40.0% |
| TCCCAGAAACAACTCTACAT+AGG | - | chr5_1:52886801-52886820 | None:intergenic | 40.0% | |
| TAGATACTTTGATCAGCACC+AGG | - | chr5_1:52886859-52886878 | None:intergenic | 40.0% | |
| AGAGGAGATCTTCAATAGCA+GGG | - | chr5_1:52886924-52886943 | None:intergenic | 40.0% | |
| AAGAGGAGATCTTCAATAGC+AGG | - | chr5_1:52886925-52886944 | None:intergenic | 40.0% | |
| TCGTTTGAGGAGATAAAGTC+AGG | + | chr5_1:52887023-52887042 | Msa0736440:intron | 40.0% | |
| ! | AGGCCTTATCTGATTCAATG+CGG | - | chr5_1:52887223-52887242 | None:intergenic | 40.0% |
| ACAGTCCTCACTTTACAAAC+TGG | + | chr5_1:52887266-52887285 | Msa0736440:intron | 40.0% | |
| !! | GGTTTTGTAAGGGTTGAGTT+AGG | + | chr5_1:52887287-52887306 | Msa0736440:intron | 40.0% |
| TGGAAACAGTGGATATCTAG+CGG | + | chr5_1:52887394-52887413 | Msa0736440:intron | 40.0% | |
| CTTGCCATCGAGAAGATTAT+TGG | - | chr5_1:52887431-52887450 | None:intergenic | 40.0% | |
| CAATAATCTTCTCGATGGCA+AGG | + | chr5_1:52887429-52887448 | Msa0736440:CDS | 40.0% | |
| !! | AGTGGGTTAGTTGAATGGTA+TGG | + | chr5_1:52887473-52887492 | Msa0736440:CDS | 40.0% |
| TTGGTGAACCTTGTCATAGT+TGG | + | chr5_1:52887518-52887537 | Msa0736440:CDS | 40.0% | |
| CCAAATGCTTCATACAAAGC+AGG | - | chr5_1:52887728-52887747 | None:intergenic | 40.0% | |
| ! | CCTGCTTTGTATGAAGCATT+TGG | + | chr5_1:52887725-52887744 | Msa0736440:CDS | 40.0% |
| GTCATTGAAGCAATGAACTG+TGG | + | chr5_1:52887755-52887774 | Msa0736440:CDS | 40.0% | |
| TTCCACATTGATCCTCTCAA+TGG | + | chr5_1:52887842-52887861 | Msa0736440:CDS | 40.0% | |
| CTTGATTCATCTCCATTGAG+AGG | - | chr5_1:52887857-52887876 | None:intergenic | 40.0% | |
| GCAAAGTAGACCCATCATAT+TGG | + | chr5_1:52887906-52887925 | Msa0736440:CDS | 40.0% | |
| TTCATTTATGCGCTGCAATC+CGG | - | chr5_1:52887948-52887967 | None:intergenic | 40.0% | |
| GATTGCAGCGCATAAATGAA+TGG | + | chr5_1:52887948-52887967 | Msa0736440:CDS | 40.0% | |
| ACAAGGAAACATCTCAAGAG+GGG | - | chr5_1:52887986-52888005 | None:intergenic | 40.0% | |
| GACAAGGAAACATCTCAAGA+GGG | - | chr5_1:52887987-52888006 | None:intergenic | 40.0% | |
| CAACCAACTCTCAAACAACA+AGG | + | chr5_1:52888428-52888447 | Msa0736440:CDS | 40.0% | |
| TCCATACACAGACTTGACAA+TGG | + | chr5_1:52888714-52888733 | Msa0736440:intron | 40.0% | |
| TGTCAAACACTGACATGTGT+CGG | + | chr5_1:52888806-52888825 | Msa0736440:intron | 40.0% | |
| TGCTGCAAACCAAGAAGAAA+AGG | - | chr5_1:52888952-52888971 | None:intergenic | 40.0% | |
| GCTCCAAGTAATAACCTGAA+AGG | - | chr5_1:52889081-52889100 | None:intergenic | 40.0% | |
| CTCCAACACATACCTTGAAG+CGG | + | chr5_1:52883468-52883487 | Msa0736440:CDS | 45.0% | |
| CTACTCTGCTTCAATGCATC+AGG | - | chr5_1:52883518-52883537 | None:intergenic | 45.0% | |
| AGTACCTAGAGAAAGGGAGA+AGG | + | chr5_1:52883564-52883583 | Msa0736440:CDS | 45.0% | |
| TGATCCTTCTCCCTTTCTCT+AGG | - | chr5_1:52883571-52883590 | None:intergenic | 45.0% | |
| !! | AATGTGTTGGACTAGTGGTG+GGG | - | chr5_1:52883821-52883840 | None:intergenic | 45.0% |
| !! | CAATGTGTTGGACTAGTGGT+GGG | - | chr5_1:52883822-52883841 | None:intergenic | 45.0% |
| !! | TCAATGTGTTGGACTAGTGG+TGG | - | chr5_1:52883823-52883842 | None:intergenic | 45.0% |
| TGTGGTGCATATGAACTTGC+AGG | + | chr5_1:52883911-52883930 | Msa0736440:intron | 45.0% | |
| GTATGTACGTGTCAACTCAG+AGG | + | chr5_1:52883995-52884014 | Msa0736440:CDS | 45.0% | |
| TCACTGATCCTCATGTGGTA+TGG | - | chr5_1:52884427-52884446 | None:intergenic | 45.0% | |
| TACCACATGAGGATCAGTGA+TGG | + | chr5_1:52884427-52884446 | Msa0736440:intron | 45.0% | |
| TACCATCACTGATCCTCATG+TGG | - | chr5_1:52884432-52884451 | None:intergenic | 45.0% | |
| ! | GGCAAAAGCACAGACTATAG+TGG | + | chr5_1:52884672-52884691 | Msa0736440:CDS | 45.0% |
| TCATGAGACTCTGCAAGTGT+AGG | - | chr5_1:52884826-52884845 | None:intergenic | 45.0% | |
| GATTGTTTATGTCGCGGTTG+AGG | - | chr5_1:52885079-52885098 | None:intergenic | 45.0% | |
| ! | TCATTTCCAGGTTGAAGGAG+TGG | + | chr5_1:52885175-52885194 | Msa0736440:intron | 45.0% |
| ! | CATTTCCAGGTTGAAGGAGT+GGG | + | chr5_1:52885176-52885195 | Msa0736440:intron | 45.0% |
| ! | ATTTCCAGGTTGAAGGAGTG+GGG | + | chr5_1:52885177-52885196 | Msa0736440:intron | 45.0% |
| AAAGGATGGGGAGATAATGC+AGG | + | chr5_1:52885207-52885226 | Msa0736440:CDS | 45.0% | |
| ATGGGGAGATAATGCAGGAA+GGG | + | chr5_1:52885212-52885231 | Msa0736440:CDS | 45.0% | |
| AGATAATGCAGGAAGGGTGA+AGG | + | chr5_1:52885218-52885237 | Msa0736440:CDS | 45.0% | |
| !! | ATCAGAAGTACTCCAAGCTC+CGG | + | chr5_1:52885257-52885276 | Msa0736440:CDS | 45.0% |
| ATTTCCAGGTTCACTGGATC+CGG | - | chr5_1:52885279-52885298 | None:intergenic | 45.0% | |
| TTTGGGCAAGCAGATGTTCT+TGG | + | chr5_1:52885357-52885376 | Msa0736440:CDS | 45.0% | |
| ATTGGACCAAGTCAAGGCAT+TGG | + | chr5_1:52885705-52885724 | Msa0736440:CDS | 45.0% | |
| !! | AGGTTGATACCTGATGCTAG+AGG | + | chr5_1:52885882-52885901 | Msa0736440:CDS | 45.0% |
| CACTTAGTTCCTCTAGCATC+AGG | - | chr5_1:52885894-52885913 | None:intergenic | 45.0% | |
| ! | TGATTGGTTCAAACTCCTGG+TGG | - | chr5_1:52885917-52885936 | None:intergenic | 45.0% |
| AGAAAGGAATCTTGCGCCAA+TGG | + | chr5_1:52885982-52886001 | Msa0736440:CDS | 45.0% | |
| GAAAGGAATCTTGCGCCAAT+GGG | + | chr5_1:52885983-52886002 | Msa0736440:CDS | 45.0% | |
| AGGCATGTATACACGCTTCA+CGG | + | chr5_1:52886048-52886067 | Msa0736440:intron | 45.0% | |
| ! | GGGAAGCCAGATCTTGTTAT+TGG | + | chr5_1:52886292-52886311 | Msa0736440:CDS | 45.0% |
| CGTACCAAGAAATTGCTGGA+AGG | + | chr5_1:52886617-52886636 | Msa0736440:CDS | 45.0% | |
| CTGGAAGAGTAAATGCAGCA+TGG | - | chr5_1:52886777-52886796 | None:intergenic | 45.0% | |
| CATGCTGCATTTACTCTTCC+AGG | + | chr5_1:52886775-52886794 | Msa0736440:CDS | 45.0% | |
| GAAACAACTCTACATAGGCC+TGG | - | chr5_1:52886796-52886815 | None:intergenic | 45.0% | |
| ! | GGCCTATGTAGAGTTGTTTC+TGG | + | chr5_1:52886796-52886815 | Msa0736440:CDS | 45.0% |
| TATCTGATTCAATGCGGGAG+CGG | - | chr5_1:52887217-52887236 | None:intergenic | 45.0% | |
| CTCCCGCATTGAATCAGATA+AGG | + | chr5_1:52887217-52887236 | Msa0736440:intron | 45.0% | |
| ! | GGCCTTATCTGATTCAATGC+GGG | - | chr5_1:52887222-52887241 | None:intergenic | 45.0% |
| GTGAACCTTGTCATAGTTGG+TGG | + | chr5_1:52887521-52887540 | Msa0736440:CDS | 45.0% | |
| AGAAGCCACCAACTATGACA+AGG | - | chr5_1:52887529-52887548 | None:intergenic | 45.0% | |
| CAGACTGATCGATATCGCAA+CGG | + | chr5_1:52887656-52887675 | Msa0736440:CDS | 45.0% | |
| !! | TCGATGCATTGCTGACTCAA+AGG | + | chr5_1:52887688-52887707 | Msa0736440:CDS | 45.0% |
| !! | CGATGCATTGCTGACTCAAA+GGG | + | chr5_1:52887689-52887708 | Msa0736440:CDS | 45.0% |
| CTCCATTGAGAGGATCAATG+TGG | - | chr5_1:52887847-52887866 | None:intergenic | 45.0% | |
| AACATCTCAAGAGGGGACAT+AGG | - | chr5_1:52887979-52887998 | None:intergenic | 45.0% | |
| GGACAAGGAAACATCTCAAG+AGG | - | chr5_1:52887988-52888007 | None:intergenic | 45.0% | |
| GGAGGTTCATCACTTGGAAT+AGG | - | chr5_1:52888392-52888411 | None:intergenic | 45.0% | |
| !!! | GGTTTTGGAGGTTCATCACT+TGG | - | chr5_1:52888398-52888417 | None:intergenic | 45.0% |
| GATGAACCTCCAAAACCAGT+TGG | + | chr5_1:52888401-52888420 | Msa0736440:CDS | 45.0% | |
| !! | GAGCCTTGTTGTTTGAGAGT+TGG | - | chr5_1:52888434-52888453 | None:intergenic | 45.0% |
| CTCTCAAACAACAAGGCTCT+AGG | + | chr5_1:52888435-52888454 | Msa0736440:CDS | 45.0% | |
| GCCATTGTCAAGTCTGTGTA+TGG | - | chr5_1:52888718-52888737 | None:intergenic | 45.0% | |
| ! | CAATGTGGATTGTGAACGTC+TGG | - | chr5_1:52888975-52888994 | None:intergenic | 45.0% |
| GTCCGCTTCAAGGTATGTGT+TGG | - | chr5_1:52883473-52883492 | None:intergenic | 50.0% | |
| TTAGGCCTAATCCAGGAGTC+TGG | + | chr5_1:52883970-52883989 | Msa0736440:CDS | 50.0% | |
| TAGGCCTAATCCAGGAGTCT+GGG | + | chr5_1:52883971-52883990 | Msa0736440:CDS | 50.0% | |
| TACTCCCAGACTCCTGGATT+AGG | - | chr5_1:52883978-52883997 | None:intergenic | 50.0% | |
| ! | AAAAGACCGCTTGCTAGGAG+AGG | + | chr5_1:52884294-52884313 | Msa0736440:intron | 50.0% |
| ! | TTTCCAGGTTGAAGGAGTGG+GGG | + | chr5_1:52885178-52885197 | Msa0736440:intron | 50.0% |
| AAGGAGTGGGGGTTTGAGAA+AGG | + | chr5_1:52885189-52885208 | Msa0736440:CDS | 50.0% | |
| AGTGGGGGTTTGAGAAAGGA+TGG | + | chr5_1:52885193-52885212 | Msa0736440:CDS | 50.0% | |
| GTGGGGGTTTGAGAAAGGAT+GGG | + | chr5_1:52885194-52885213 | Msa0736440:CDS | 50.0% | |
| TGGGGGTTTGAGAAAGGATG+GGG | + | chr5_1:52885195-52885214 | Msa0736440:CDS | 50.0% | |
| GATGGGGAGATAATGCAGGA+AGG | + | chr5_1:52885211-52885230 | Msa0736440:CDS | 50.0% | |
| TGTCTCTGCGACTGCAACTA+AGG | - | chr5_1:52885541-52885560 | None:intergenic | 50.0% | |
| CCTCTTCCAATGCCTTGACT+TGG | - | chr5_1:52885714-52885733 | None:intergenic | 50.0% | |
| !! | CCAAGTCAAGGCATTGGAAG+AGG | + | chr5_1:52885711-52885730 | Msa0736440:CDS | 50.0% |
| TAGAGGAACTAAGTGCCACC+AGG | + | chr5_1:52885899-52885918 | Msa0736440:CDS | 50.0% | |
| TGTCGAAGCGAGAAACCCAT+TGG | - | chr5_1:52886001-52886020 | None:intergenic | 50.0% | |
| ! | GATCTGGCTTCCCTTCCATT+AGG | - | chr5_1:52886285-52886304 | None:intergenic | 50.0% |
| GCATGGCTTTCATACTGTCC+AGG | - | chr5_1:52886760-52886779 | None:intergenic | 50.0% | |
| TAAGATCCAATCGGGCCACT+CGG | + | chr5_1:52887147-52887166 | Msa0736440:intron | 50.0% | |
| AGATGTCTAGTCTACGCGTG+AGG | + | chr5_1:52887180-52887199 | Msa0736440:intron | 50.0% | |
| GATGTCTAGTCTACGCGTGA+GGG | + | chr5_1:52887181-52887200 | Msa0736440:intron | 50.0% | |
| ATCTGATTCAATGCGGGAGC+GGG | - | chr5_1:52887216-52887235 | None:intergenic | 50.0% | |
| GTGGATATCTAGCGGAGAAG+AGG | + | chr5_1:52887402-52887421 | Msa0736440:intron | 50.0% | |
| !!! | TGGGGAGCACTTACACCTTT+TGG | + | chr5_1:52888165-52888184 | Msa0736440:CDS | 50.0% |
| !!! | TGCTTGCCAACTGGTTTTGG+AGG | - | chr5_1:52888410-52888429 | None:intergenic | 50.0% |
| !! | GGTTGCTTGCCAACTGGTTT+TGG | - | chr5_1:52888413-52888432 | None:intergenic | 50.0% |
| ! | AGAGTTGGTTGCTTGCCAAC+TGG | - | chr5_1:52888419-52888438 | None:intergenic | 50.0% |
| ! | GACTAGTGGTGGGGATCAAG+GGG | - | chr5_1:52883812-52883831 | None:intergenic | 55.0% |
| ! | GGACTAGTGGTGGGGATCAA+GGG | - | chr5_1:52883813-52883832 | None:intergenic | 55.0% |
| !! | TGGACTAGTGGTGGGGATCA+AGG | - | chr5_1:52883814-52883833 | None:intergenic | 55.0% |
| CGTACATACTCCCAGACTCC+TGG | - | chr5_1:52883984-52884003 | None:intergenic | 55.0% | |
| CTCAGAGGACCTCTCTGTTG+AGG | + | chr5_1:52884010-52884029 | Msa0736440:CDS | 55.0% | |
| GGGTGATAGCCTCAACAGAG+AGG | - | chr5_1:52884022-52884041 | None:intergenic | 55.0% | |
| AGATGGCCTCTCCTAGCAAG+CGG | - | chr5_1:52884303-52884322 | None:intergenic | 55.0% | |
| CTCGGCTGCAAAGCTTCAGA+TGG | + | chr5_1:52884862-52884881 | Msa0736440:CDS | 55.0% | |
| AAACCCCCACTCCTTCAACC+TGG | - | chr5_1:52885184-52885203 | None:intergenic | 55.0% | |
| !! | GTTCTTGGCTTGCCAGACAC+TGG | + | chr5_1:52885372-52885391 | Msa0736440:CDS | 55.0% |
| TTTACCTGGCCACCAGTGTC+TGG | - | chr5_1:52885387-52885406 | None:intergenic | 55.0% | |
| ! | GGAGAGCATGCGGTGTAATG+CGG | + | chr5_1:52885515-52885534 | Msa0736440:intron | 55.0% |
| GATTTGCGGCTGCGACATCT+TGG | - | chr5_1:52885571-52885590 | None:intergenic | 55.0% | |
| AAGATCCAATCGGGCCACTC+GGG | + | chr5_1:52887148-52887167 | Msa0736440:intron | 55.0% | |
| TGGAACGTGATTTCTGCGGC+CGG | + | chr5_1:52887926-52887945 | Msa0736440:CDS | 55.0% | |
| GGTTCACTGGATCCGGAGCT+TGG | - | chr5_1:52885272-52885291 | None:intergenic | 60.0% | |
| AGCTCCGGATCCAGTGAACC+TGG | + | chr5_1:52885272-52885291 | Msa0736440:CDS | 60.0% | |
| !! | CTTGGCTTGCCAGACACTGG+TGG | + | chr5_1:52885375-52885394 | Msa0736440:CDS | 60.0% |
| CATCTGTAGCGTGACCCGAG+TGG | - | chr5_1:52887165-52887184 | None:intergenic | 60.0% | |
| CTTGCCAGACACTGGTGGCC+AGG | + | chr5_1:52885380-52885399 | Msa0736440:CDS | 65.0% | |
| CGTGACCCGAGTGGCCCGAT+TGG | - | chr5_1:52887156-52887175 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 52883385 | 52889300 | 52883385 | ID=Msa0736440;Name=Msa0736440 |
| chr5_1 | mRNA | 52883385 | 52889300 | 52883385 | ID=Msa0736440-mRNA-1;Parent=Msa0736440;Name=Msa0736440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=79|1|1|1|0.92|0.86|15|196|843 |
| chr5_1 | exon | 52883385 | 52883697 | 52883385 | ID=Msa0736440-mRNA-1:exon:14840;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52883933 | 52884087 | 52883933 | ID=Msa0736440-mRNA-1:exon:14841;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52884534 | 52884726 | 52884534 | ID=Msa0736440-mRNA-1:exon:14842;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52884836 | 52884954 | 52884836 | ID=Msa0736440-mRNA-1:exon:14843;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52885185 | 52885401 | 52885185 | ID=Msa0736440-mRNA-1:exon:14844;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52885694 | 52885789 | 52885694 | ID=Msa0736440-mRNA-1:exon:14845;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52885876 | 52886049 | 52885876 | ID=Msa0736440-mRNA-1:exon:14846;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52886259 | 52886375 | 52886259 | ID=Msa0736440-mRNA-1:exon:14847;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52886472 | 52886638 | 52886472 | ID=Msa0736440-mRNA-1:exon:14848;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52886747 | 52886971 | 52886747 | ID=Msa0736440-mRNA-1:exon:14849;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52887403 | 52887969 | 52887403 | ID=Msa0736440-mRNA-1:exon:14850;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52888127 | 52888265 | 52888127 | ID=Msa0736440-mRNA-1:exon:14851;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52888377 | 52888456 | 52888377 | ID=Msa0736440-mRNA-1:exon:14852;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52888970 | 52888999 | 52888970 | ID=Msa0736440-mRNA-1:exon:14853;Parent=Msa0736440-mRNA-1 |
| chr5_1 | exon | 52889086 | 52889300 | 52889086 | ID=Msa0736440-mRNA-1:exon:14854;Parent=Msa0736440-mRNA-1 |
| chr5_1 | five_prime_UTR | 52883385 | 52883463 | 52883385 | ID=Msa0736440-mRNA-1:five_prime_utr;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52883464 | 52883697 | 52883464 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52883933 | 52884087 | 52883933 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52884534 | 52884726 | 52884534 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52884836 | 52884954 | 52884836 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52885185 | 52885401 | 52885185 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52885694 | 52885789 | 52885694 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52885876 | 52886049 | 52885876 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52886259 | 52886375 | 52886259 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52886472 | 52886638 | 52886472 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52886747 | 52886971 | 52886747 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52887403 | 52887969 | 52887403 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52888127 | 52888265 | 52888127 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52888377 | 52888456 | 52888377 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52888970 | 52888999 | 52888970 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | CDS | 52889086 | 52889104 | 52889086 | ID=Msa0736440-mRNA-1:cds;Parent=Msa0736440-mRNA-1 |
| chr5_1 | three_prime_UTR | 52889105 | 52889300 | 52889105 | ID=Msa0736440-mRNA-1:three_prime_utr;Parent=Msa0736440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
