Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857810 | XP_003616296.2 | 95.980 | 398 | 16 | 0 | 1 | 398 | 517 | 914 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857810 | sp|Q8W489|RAD4_ARATH | 56.965 | 402 | 161 | 6 | 2 | 398 | 471 | 865 | 3.60e-132 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857810 | G7K1Q6 | 95.980 | 398 | 16 | 0 | 1 | 398 | 517 | 914 | 0.0 | 776 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0673450 | Msa0857810 | 0.817531 | 3.142191e-52 | -8.615850e-47 |
| Msa0766630 | Msa0857810 | 0.809755 | 1.617608e-50 | -8.615850e-47 |
| Msa0153910 | Msa0857810 | 0.821572 | 3.759349e-53 | -8.615850e-47 |
| Msa0199240 | Msa0857810 | 0.817604 | 3.025780e-52 | -8.615850e-47 |
| Msa0371730 | Msa0857810 | 0.814155 | 1.779563e-51 | -8.615850e-47 |
| Msa0417080 | Msa0857810 | 0.810204 | 1.294831e-50 | -8.615850e-47 |
| Msa0466120 | Msa0857810 | 0.800806 | 1.212334e-48 | -8.615850e-47 |
| Msa0857810 | Msa0885280 | 0.820856 | 5.497457e-53 | -8.615850e-47 |
| Msa0857810 | Msa0885290 | 0.818198 | 2.220979e-52 | -8.615850e-47 |
| Msa0857810 | Msa0907070 | 0.801150 | 1.031525e-48 | -8.615850e-47 |
| Msa0857810 | Msa1136090 | 0.823348 | 1.453571e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857810 | MtrunA17_Chr5g0434701 | 95.980 | 398 | 16 | 0 | 1 | 398 | 517 | 914 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857810 | AT5G16630.1 | 56.965 | 402 | 161 | 6 | 2 | 398 | 471 | 865 | 3.66e-133 | 402 |
| Msa0857810 | AT5G16630.2 | 56.965 | 402 | 161 | 6 | 2 | 398 | 471 | 865 | 3.66e-133 | 402 |
| Msa0857810 | AT5G16630.3 | 62.585 | 147 | 51 | 2 | 2 | 144 | 471 | 617 | 2.28e-52 | 185 |
Find 90 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATGTTAGACTTTA+TGG | 0.015710 | 5_4:-54336742 | Msa0857810:CDS |
| TTGTACTTTCTGAGGCTTAA+TGG | 0.198148 | 5_4:+54336804 | None:intergenic |
| TCATCCAAAGGGTCCGATTC+TGG | 0.210937 | 5_4:-54337060 | Msa0857810:CDS |
| TTCTCGGAGCCATCTCTCTT+TGG | 0.290930 | 5_4:+54336983 | None:intergenic |
| CACCAGGTACAGTGCCCTTT+AGG | 0.302031 | 5_4:-54336148 | Msa0857810:CDS |
| AGGAAAATGTTAGACTTTAT+GGG | 0.314747 | 5_4:-54336741 | Msa0857810:CDS |
| GTTTCACTTGCAGCCCTTCT+CGG | 0.339126 | 5_4:+54336967 | None:intergenic |
| CAACCAGATTAGACCTTTGC+AGG | 0.339722 | 5_4:+54336933 | None:intergenic |
| ACCTTTGCAGGATGTTCATT+GGG | 0.351208 | 5_4:+54336945 | None:intergenic |
| CATCCAAAGGGTCCGATTCT+GGG | 0.359608 | 5_4:-54337059 | Msa0857810:CDS |
| TGACTGCACTACTGATTCTA+AGG | 0.366300 | 5_4:-54336761 | Msa0857810:CDS |
| ACACAAGTCCTAGGGTAAAC+AGG | 0.374218 | 5_4:+54337020 | None:intergenic |
| CGAGCACATCCCGTCTATAA+TGG | 0.375101 | 5_4:-54336044 | Msa0857810:CDS |
| TTGTCTATCTGATGGTGTCT+AGG | 0.386306 | 5_4:+54335451 | None:intergenic |
| GACCTTTGCAGGATGTTCAT+TGG | 0.391697 | 5_4:+54336944 | None:intergenic |
| TGTCTATCTGATGGTGTCTA+GGG | 0.398884 | 5_4:+54335452 | None:intergenic |
| AACTTAGAGTCTGGAGCAAC+TGG | 0.405496 | 5_4:-54337366 | Msa0857810:CDS |
| AACCCCAGAATCGGACCCTT+TGG | 0.408678 | 5_4:+54337056 | None:intergenic |
| AAAAGCTGAAGAAAAGAAAA+GGG | 0.417352 | 5_4:-54335650 | Msa0857810:CDS |
| TGTCGTGTGTGCCGAGTTCA+AGG | 0.417985 | 5_4:-54336018 | Msa0857810:CDS |
| TTGCTTCTGTAGCATTGATT+TGG | 0.422218 | 5_4:+54337319 | None:intergenic |
| AGCATGGTCAAGTGGATGTC+TGG | 0.435352 | 5_4:-54336187 | Msa0857810:CDS |
| AACCTAAAGGGCACTGTACC+TGG | 0.446820 | 5_4:+54336146 | None:intergenic |
| AATCTTCCTCACGCGGTGAA+TGG | 0.449667 | 5_4:-54336697 | Msa0857810:CDS |
| ACAGTTTGCACACAAGTCCT+AGG | 0.463689 | 5_4:+54337011 | None:intergenic |
| TCCTCAATAGAGCTCCTTGT+AGG | 0.465796 | 5_4:+54337276 | None:intergenic |
| ATGTTAGACTTTATGGGAAG+TGG | 0.471181 | 5_4:-54336735 | Msa0857810:CDS |
| AATTCAAAACCAACCATAGC+AGG | 0.481589 | 5_4:+54336077 | None:intergenic |
| GGGATACTTACTGAAACGTC+TGG | 0.485432 | 5_4:+54335415 | None:intergenic |
| CAGGTCACCCTGTTTACCCT+AGG | 0.488850 | 5_4:-54337028 | Msa0857810:CDS |
| TCCTACAAGGAGCTCTATTG+AGG | 0.488940 | 5_4:-54337277 | Msa0857810:CDS |
| ACCTGCTGGTTGGTTGGAAG+AGG | 0.489367 | 5_4:+54337222 | None:intergenic |
| ACCGCGTGAGGAAGATTCAA+TGG | 0.500697 | 5_4:+54336703 | None:intergenic |
| CCTGAACAAAACCCCAGAAT+CGG | 0.504714 | 5_4:+54337047 | None:intergenic |
| CCACTGAGAAACTTAGAGTC+TGG | 0.508190 | 5_4:-54337375 | Msa0857810:CDS |
| TATGCGCTTCGAAACCTAAA+GGG | 0.508816 | 5_4:+54336134 | None:intergenic |
| GATTCTGCACCTGCTATGGT+TGG | 0.511076 | 5_4:-54336086 | Msa0857810:CDS |
| TTTCTATGACATAAAGTGGA+TGG | 0.513035 | 5_4:+54337108 | None:intergenic |
| TCAAAATCTTGTACTTTCTG+AGG | 0.514663 | 5_4:+54336796 | None:intergenic |
| ACAATCGTTATAATAACAGT+TGG | 0.515696 | 5_4:-54335561 | Msa0857810:CDS |
| GATTGATTCTGCACCTGCTA+TGG | 0.516302 | 5_4:-54336090 | Msa0857810:CDS |
| AGAGTACGAGAGCTTTGATA+AGG | 0.516887 | 5_4:-54335362 | Msa0857810:CDS |
| CATCTATTGTAACTCGTCAA+AGG | 0.520989 | 5_4:-54335588 | Msa0857810:CDS |
| ATCCAAAGGGTCCGATTCTG+GGG | 0.525430 | 5_4:-54337058 | Msa0857810:CDS |
| ATATGCGCTTCGAAACCTAA+AGG | 0.529147 | 5_4:+54336133 | None:intergenic |
| AGAATCAATCTCTAGCCTCT+TGG | 0.533815 | 5_4:+54336103 | None:intergenic |
| TATCAAATACTTCATCCAAA+GGG | 0.539111 | 5_4:-54337071 | Msa0857810:CDS |
| AAGAGAGATGGCTCCGAGAA+GGG | 0.541018 | 5_4:-54336980 | Msa0857810:CDS |
| CACGACAATACCATTATAGA+CGG | 0.541024 | 5_4:+54336034 | None:intergenic |
| ACCTCTTCCAACCAACCAGC+AGG | 0.541594 | 5_4:-54337223 | Msa0857810:intron |
| CATTATAGACGGGATGTGCT+CGG | 0.545650 | 5_4:+54336045 | None:intergenic |
| TATCACATTTGTCTATCTGA+TGG | 0.547483 | 5_4:+54335443 | None:intergenic |
| GTCTATCTGATGGTGTCTAG+GGG | 0.554794 | 5_4:+54335453 | None:intergenic |
| TGGACATCATTTGACACCTC+AGG | 0.562064 | 5_4:+54335535 | None:intergenic |
| AAAGAGAGATGGCTCCGAGA+AGG | 0.562954 | 5_4:-54336981 | Msa0857810:CDS |
| GAAACTACCTGCTGGTTGGT+TGG | 0.565218 | 5_4:+54337216 | None:intergenic |
| TTACAATAGATGAAAGAAGC+TGG | 0.567774 | 5_4:+54335599 | None:intergenic |
| TAGCAGTATGTCCTTGAACT+CGG | 0.568007 | 5_4:+54336007 | None:intergenic |
| ACACATTATCATTCACACAA+TGG | 0.568770 | 5_4:+54335515 | None:intergenic |
| AGGACGTTGAGTTAGAAACT+AGG | 0.570154 | 5_4:-54337257 | Msa0857810:CDS |
| GTATCAAATACTTCATCCAA+AGG | 0.571178 | 5_4:-54337072 | Msa0857810:CDS |
| GTCTGGAGCAACTGGTGGTG+TGG | 0.575557 | 5_4:-54337358 | Msa0857810:CDS |
| GGACGTTGAGTTAGAAACTA+GGG | 0.577631 | 5_4:-54337256 | Msa0857810:CDS |
| GCATCGCTTTGTCAACAAAG+AGG | 0.581852 | 5_4:+54335336 | None:intergenic |
| GCGAGTTAATTCAACATGGT+GGG | 0.589568 | 5_4:-54337412 | Msa0857810:CDS |
| CACAAGTCCTAGGGTAAACA+GGG | 0.591721 | 5_4:+54337021 | None:intergenic |
| ACTATTCCATTCACCGCGTG+AGG | 0.599144 | 5_4:+54336691 | None:intergenic |
| CTGTTATGACCAAAGAGAGA+TGG | 0.614412 | 5_4:-54336992 | Msa0857810:CDS |
| AGACGTTTCAGTAAGTATCC+CGG | 0.615246 | 5_4:-54335413 | Msa0857810:CDS |
| ACTTACTGAAACGTCTGGAT+CGG | 0.615536 | 5_4:+54335420 | None:intergenic |
| GTCACTACTACCACATATTG+TGG | 0.615626 | 5_4:+54335486 | None:intergenic |
| ATGAAACAGAAGCTCTTCGT+AGG | 0.615783 | 5_4:-54335627 | Msa0857810:CDS |
| ACCCAATGAACATCCTGCAA+AGG | 0.617404 | 5_4:-54336946 | Msa0857810:intron |
| GTGTCAAATGCCACAATATG+TGG | 0.621219 | 5_4:-54335496 | Msa0857810:CDS |
| CAGTTTGCACACAAGTCCTA+GGG | 0.621494 | 5_4:+54337012 | None:intergenic |
| ACGACAATACCATTATAGAC+GGG | 0.622990 | 5_4:+54336035 | None:intergenic |
| CTAGAACGAGCATGGTCAAG+TGG | 0.626611 | 5_4:-54336195 | Msa0857810:intron |
| AGCGAGTTAATTCAACATGG+TGG | 0.628936 | 5_4:-54337413 | Msa0857810:CDS |
| TTAGAGTCTGGAGCAACTGG+TGG | 0.647103 | 5_4:-54337363 | Msa0857810:CDS |
| AAACAGAAGCTCTTCGTAGG+TGG | 0.649031 | 5_4:-54335624 | Msa0857810:CDS |
| ACCATTGAATCTTCCTCACG+CGG | 0.653369 | 5_4:-54336704 | Msa0857810:CDS |
| ATATTAGGTACTGTATGAAG+TGG | 0.656189 | 5_4:-54337452 | None:intergenic |
| CACAGCGAGTTAATTCAACA+TGG | 0.657556 | 5_4:-54337416 | Msa0857810:CDS |
| TCTGAGAAATCTCTTCCACC+AGG | 0.663229 | 5_4:-54336164 | Msa0857810:CDS |
| TAATAACAGTTGGACACCTG+AGG | 0.669659 | 5_4:-54335551 | Msa0857810:CDS |
| GCGCATATTCTGTTGCCAAG+AGG | 0.670329 | 5_4:-54336118 | Msa0857810:CDS |
| GTTCAAGGACATACTGCTAG+AGG | 0.670749 | 5_4:-54336003 | Msa0857810:intron |
| CCAGACTCTAAGTTTCTCAG+TGG | 0.685977 | 5_4:+54337375 | None:intergenic |
| CTAAAGGGCACTGTACCTGG+TGG | 0.711066 | 5_4:+54336149 | None:intergenic |
| TTGACAAAGCGATGCCAATG+TGG | 0.715315 | 5_4:-54335328 | Msa0857810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAACTTAATTATAAATTAA+GGG | + | chr5_4:54336105-54336124 | None:intergenic | 10.0% |
| !! | TCAAACTTAATTATAAATTA+AGG | + | chr5_4:54336106-54336125 | None:intergenic | 10.0% |
| !! | CAAACTTAATTATAAATTAA+GGG | + | chr5_4:54336105-54336124 | None:intergenic | 10.0% |
| !! | TCAAACTTAATTATAAATTA+AGG | + | chr5_4:54336106-54336125 | None:intergenic | 10.0% |
| !! | ATTACATGTGCATATTAATA+GGG | + | chr5_4:54335872-54335891 | None:intergenic | 20.0% |
| !! | AATTACATGTGCATATTAAT+AGG | + | chr5_4:54335873-54335892 | None:intergenic | 20.0% |
| !!! | CTATTTAAGAATTTTCCAAA+GGG | + | chr5_4:54336150-54336169 | None:intergenic | 20.0% |
| !!! | TCTATTTAAGAATTTTCCAA+AGG | + | chr5_4:54336151-54336170 | None:intergenic | 20.0% |
| !! | AAAATTGGAATTGTAATTGA+AGG | + | chr5_4:54336430-54336449 | None:intergenic | 20.0% |
| !!! | ATTCCAATTTTTAAACAAAC+TGG | - | chr5_4:54336439-54336458 | Msa0857810:intron | 20.0% |
| !!! | GTTGGTTTTGAATTTAAAAA+TGG | - | chr5_4:54336670-54336689 | Msa0857810:intron | 20.0% |
| !! | AACAATATAACTTATTCATC+GGG | + | chr5_4:54336771-54336790 | None:intergenic | 20.0% |
| !! | CAACAATATAACTTATTCAT+CGG | + | chr5_4:54336772-54336791 | None:intergenic | 20.0% |
| !! | ATGAATAAGTTATATTGTTG+TGG | - | chr5_4:54336772-54336791 | Msa0857810:CDS | 20.0% |
| !! | TGTAATGAAACTATACAAAT+AGG | + | chr5_4:54337005-54337024 | None:intergenic | 20.0% |
| !! | ATTACATGTGCATATTAATA+GGG | + | chr5_4:54335872-54335891 | None:intergenic | 20.0% |
| !! | AATTACATGTGCATATTAAT+AGG | + | chr5_4:54335873-54335892 | None:intergenic | 20.0% |
| !!! | CTATTTAAGAATTTTCCAAA+GGG | + | chr5_4:54336150-54336169 | None:intergenic | 20.0% |
| !!! | TCTATTTAAGAATTTTCCAA+AGG | + | chr5_4:54336151-54336170 | None:intergenic | 20.0% |
| !! | AAAATTGGAATTGTAATTGA+AGG | + | chr5_4:54336430-54336449 | None:intergenic | 20.0% |
| !!! | ATTCCAATTTTTAAACAAAC+TGG | - | chr5_4:54336439-54336458 | Msa0857810:intron | 20.0% |
| !!! | GTTGGTTTTGAATTTAAAAA+TGG | - | chr5_4:54336670-54336689 | Msa0857810:intron | 20.0% |
| !! | AACAATATAACTTATTCATC+GGG | + | chr5_4:54336771-54336790 | None:intergenic | 20.0% |
| !! | CAACAATATAACTTATTCAT+CGG | + | chr5_4:54336772-54336791 | None:intergenic | 20.0% |
| !! | ATGAATAAGTTATATTGTTG+TGG | - | chr5_4:54336772-54336791 | Msa0857810:CDS | 20.0% |
| !! | TGTAATGAAACTATACAAAT+AGG | + | chr5_4:54337005-54337024 | None:intergenic | 20.0% |
| ! | TACAATATCAAACATCATGT+TGG | + | chr5_4:54335562-54335581 | None:intergenic | 25.0% |
| !!! | CTTTTTTCTATGACATAAAG+TGG | + | chr5_4:54335637-54335656 | None:intergenic | 25.0% |
| ! | CACTTTATGTCATAGAAAAA+AGG | - | chr5_4:54335635-54335654 | Msa0857810:CDS | 25.0% |
| ! | TATCAAATACTTCATCCAAA+GGG | - | chr5_4:54335667-54335686 | Msa0857810:CDS | 25.0% |
| ! | TTACATGTGCATATTAATAG+GGG | + | chr5_4:54335871-54335890 | None:intergenic | 25.0% |
| ! | AAGGAAAATGTTAGACTTTA+TGG | - | chr5_4:54335996-54336015 | Msa0857810:intron | 25.0% |
| ! | AGGAAAATGTTAGACTTTAT+GGG | - | chr5_4:54335997-54336016 | Msa0857810:intron | 25.0% |
| !!! | TTATAAATTAAGGGCATTCA+TGG | + | chr5_4:54336096-54336115 | None:intergenic | 25.0% |
| !! | TGTCCAGTTTGTTTAAAAAT+TGG | + | chr5_4:54336445-54336464 | None:intergenic | 25.0% |
| ! | AATTCATTTCAGCAGATTTA+TGG | + | chr5_4:54336861-54336880 | None:intergenic | 25.0% |
| ! | ATAAATCTGCTGAAATGAAT+TGG | - | chr5_4:54336860-54336879 | Msa0857810:intron | 25.0% |
| ! | AAAAAGCTGAAGAAAAGAAA+AGG | - | chr5_4:54337087-54337106 | Msa0857810:CDS | 25.0% |
| ! | AAAAGCTGAAGAAAAGAAAA+GGG | - | chr5_4:54337088-54337107 | Msa0857810:CDS | 25.0% |
| ! | ACAATCGTTATAATAACAGT+TGG | - | chr5_4:54337177-54337196 | Msa0857810:intron | 25.0% |
| ! | TACAATATCAAACATCATGT+TGG | + | chr5_4:54335562-54335581 | None:intergenic | 25.0% |
| !!! | CTTTTTTCTATGACATAAAG+TGG | + | chr5_4:54335637-54335656 | None:intergenic | 25.0% |
| ! | CACTTTATGTCATAGAAAAA+AGG | - | chr5_4:54335635-54335654 | Msa0857810:CDS | 25.0% |
| ! | TATCAAATACTTCATCCAAA+GGG | - | chr5_4:54335667-54335686 | Msa0857810:CDS | 25.0% |
| ! | TTACATGTGCATATTAATAG+GGG | + | chr5_4:54335871-54335890 | None:intergenic | 25.0% |
| ! | AAGGAAAATGTTAGACTTTA+TGG | - | chr5_4:54335996-54336015 | Msa0857810:intron | 25.0% |
| ! | AGGAAAATGTTAGACTTTAT+GGG | - | chr5_4:54335997-54336016 | Msa0857810:intron | 25.0% |
| !!! | TTATAAATTAAGGGCATTCA+TGG | + | chr5_4:54336096-54336115 | None:intergenic | 25.0% |
| !! | TGTCCAGTTTGTTTAAAAAT+TGG | + | chr5_4:54336445-54336464 | None:intergenic | 25.0% |
| ! | AATTCATTTCAGCAGATTTA+TGG | + | chr5_4:54336861-54336880 | None:intergenic | 25.0% |
| ! | ATAAATCTGCTGAAATGAAT+TGG | - | chr5_4:54336860-54336879 | Msa0857810:intron | 25.0% |
| ! | AAAAAGCTGAAGAAAAGAAA+AGG | - | chr5_4:54337087-54337106 | Msa0857810:CDS | 25.0% |
| ! | AAAAGCTGAAGAAAAGAAAA+GGG | - | chr5_4:54337088-54337107 | Msa0857810:CDS | 25.0% |
| ! | ACAATCGTTATAATAACAGT+TGG | - | chr5_4:54337177-54337196 | Msa0857810:intron | 25.0% |
| ! | ATGATTCTTTTCTTCCTACA+AGG | - | chr5_4:54335448-54335467 | Msa0857810:CDS | 30.0% |
| ! | ATAAAGTGGATGGTTTTTGT+AGG | + | chr5_4:54335623-54335642 | None:intergenic | 30.0% |
| TTTCTATGACATAAAGTGGA+TGG | + | chr5_4:54335633-54335652 | None:intergenic | 30.0% | |
| GTATCAAATACTTCATCCAA+AGG | - | chr5_4:54335666-54335685 | Msa0857810:CDS | 30.0% | |
| TACATGTGCATATTAATAGG+GGG | + | chr5_4:54335870-54335889 | None:intergenic | 30.0% | |
| TTACCCAAAAATATCTTTCC+AGG | - | chr5_4:54335899-54335918 | Msa0857810:intron | 30.0% | |
| TCAAAATCTTGTACTTTCTG+AGG | + | chr5_4:54335945-54335964 | None:intergenic | 30.0% | |
| GAATGTAAAGACGATACATT+AGG | + | chr5_4:54336074-54336093 | None:intergenic | 30.0% | |
| ! | GTATTCAACTTTTTACCCTT+TGG | - | chr5_4:54336132-54336151 | Msa0857810:CDS | 30.0% |
| GGAAAATTCTTAAATAGACC+CGG | - | chr5_4:54336153-54336172 | Msa0857810:CDS | 30.0% | |
| ACTTAGATTTCGATCTTGAA+AGG | - | chr5_4:54336229-54336248 | Msa0857810:intron | 30.0% | |
| TGGAATTGTAATTGAAGGTT+TGG | + | chr5_4:54336425-54336444 | None:intergenic | 30.0% | |
| ACTATACACAGTGTAAATCA+TGG | - | chr5_4:54336887-54336906 | Msa0857810:intron | 30.0% | |
| TTACAATAGATGAAAGAAGC+TGG | + | chr5_4:54337142-54337161 | None:intergenic | 30.0% | |
| ACACATTATCATTCACACAA+TGG | + | chr5_4:54337226-54337245 | None:intergenic | 30.0% | |
| TATCACATTTGTCTATCTGA+TGG | + | chr5_4:54337298-54337317 | None:intergenic | 30.0% | |
| !! | CTTTTAGAAAAACATGCTCA+TGG | + | chr5_4:54337358-54337377 | None:intergenic | 30.0% |
| ! | ATGATTCTTTTCTTCCTACA+AGG | - | chr5_4:54335448-54335467 | Msa0857810:CDS | 30.0% |
| ! | ATAAAGTGGATGGTTTTTGT+AGG | + | chr5_4:54335623-54335642 | None:intergenic | 30.0% |
| TTTCTATGACATAAAGTGGA+TGG | + | chr5_4:54335633-54335652 | None:intergenic | 30.0% | |
| GTATCAAATACTTCATCCAA+AGG | - | chr5_4:54335666-54335685 | Msa0857810:CDS | 30.0% | |
| TACATGTGCATATTAATAGG+GGG | + | chr5_4:54335870-54335889 | None:intergenic | 30.0% | |
| TTACCCAAAAATATCTTTCC+AGG | - | chr5_4:54335899-54335918 | Msa0857810:intron | 30.0% | |
| TCAAAATCTTGTACTTTCTG+AGG | + | chr5_4:54335945-54335964 | None:intergenic | 30.0% | |
| GAATGTAAAGACGATACATT+AGG | + | chr5_4:54336074-54336093 | None:intergenic | 30.0% | |
| ! | GTATTCAACTTTTTACCCTT+TGG | - | chr5_4:54336132-54336151 | Msa0857810:CDS | 30.0% |
| GGAAAATTCTTAAATAGACC+CGG | - | chr5_4:54336153-54336172 | Msa0857810:CDS | 30.0% | |
| ACTTAGATTTCGATCTTGAA+AGG | - | chr5_4:54336229-54336248 | Msa0857810:intron | 30.0% | |
| TGGAATTGTAATTGAAGGTT+TGG | + | chr5_4:54336425-54336444 | None:intergenic | 30.0% | |
| ACTATACACAGTGTAAATCA+TGG | - | chr5_4:54336887-54336906 | Msa0857810:intron | 30.0% | |
| TTACAATAGATGAAAGAAGC+TGG | + | chr5_4:54337142-54337161 | None:intergenic | 30.0% | |
| ACACATTATCATTCACACAA+TGG | + | chr5_4:54337226-54337245 | None:intergenic | 30.0% | |
| TATCACATTTGTCTATCTGA+TGG | + | chr5_4:54337298-54337317 | None:intergenic | 30.0% | |
| !! | CTTTTAGAAAAACATGCTCA+TGG | + | chr5_4:54337358-54337377 | None:intergenic | 30.0% |
| !! | TTGCTTCTGTAGCATTGATT+TGG | + | chr5_4:54335422-54335441 | None:intergenic | 35.0% |
| !!! | TTACTTTTGAAACTACCTGC+TGG | + | chr5_4:54335533-54335552 | None:intergenic | 35.0% |
| ! | ATCAAACATCATGTTGGCTA+AGG | + | chr5_4:54335556-54335575 | None:intergenic | 35.0% |
| GGGAAAATGCAATGAAATCA+GGG | + | chr5_4:54335850-54335869 | None:intergenic | 35.0% | |
| ! | GCTCCTGGAAAGATATTTTT+GGG | + | chr5_4:54335905-54335924 | None:intergenic | 35.0% |
| ! | AGCTCCTGGAAAGATATTTT+TGG | + | chr5_4:54335906-54335925 | None:intergenic | 35.0% |
| !! | TTGTACTTTCTGAGGCTTAA+TGG | + | chr5_4:54335937-54335956 | None:intergenic | 35.0% |
| ATGTTAGACTTTATGGGAAG+TGG | - | chr5_4:54336003-54336022 | Msa0857810:intron | 35.0% | |
| ! | CGATCTTGAAAGGTAGATTT+TGG | - | chr5_4:54336239-54336258 | Msa0857810:intron | 35.0% |
| CACCAACTACATGTTCTTAT+TGG | - | chr5_4:54336264-54336283 | Msa0857810:intron | 35.0% | |
| GACCAATAAGAACATGTAGT+TGG | + | chr5_4:54336269-54336288 | None:intergenic | 35.0% | |
| GTCTACGGAATATGGTAATT+CGG | + | chr5_4:54336328-54336347 | None:intergenic | 35.0% | |
| TAATTGAAGGTTTGGACTTC+AGG | + | chr5_4:54336417-54336436 | None:intergenic | 35.0% | |
| ! | GCTCGTTCTAGATGTAAAAT+AGG | + | chr5_4:54336534-54336553 | None:intergenic | 35.0% |
| !! | TTTTACATCTAGAACGAGCA+TGG | - | chr5_4:54336535-54336554 | Msa0857810:intron | 35.0% |
| AATTCAAAACCAACCATAGC+AGG | + | chr5_4:54336664-54336683 | None:intergenic | 35.0% | |
| ACGACAATACCATTATAGAC+GGG | + | chr5_4:54336706-54336725 | None:intergenic | 35.0% | |
| CACGACAATACCATTATAGA+CGG | + | chr5_4:54336707-54336726 | None:intergenic | 35.0% | |
| CATTTCAGCAGATTTATGGA+GGG | + | chr5_4:54336857-54336876 | None:intergenic | 35.0% | |
| TCATTTCAGCAGATTTATGG+AGG | + | chr5_4:54336858-54336877 | None:intergenic | 35.0% | |
| ! | GGTAGCTTAGTTTGACAATA+TGG | - | chr5_4:54336908-54336927 | Msa0857810:intron | 35.0% |
| ATTGACATACACAGACTTGA+GGG | + | chr5_4:54336975-54336994 | None:intergenic | 35.0% | |
| TATTGACATACACAGACTTG+AGG | + | chr5_4:54336976-54336995 | None:intergenic | 35.0% | |
| CATCTATTGTAACTCGTCAA+AGG | - | chr5_4:54337150-54337169 | Msa0857810:intron | 35.0% | |
| !! | TTGCTTCTGTAGCATTGATT+TGG | + | chr5_4:54335422-54335441 | None:intergenic | 35.0% |
| !!! | TTACTTTTGAAACTACCTGC+TGG | + | chr5_4:54335533-54335552 | None:intergenic | 35.0% |
| ! | ATCAAACATCATGTTGGCTA+AGG | + | chr5_4:54335556-54335575 | None:intergenic | 35.0% |
| GGGAAAATGCAATGAAATCA+GGG | + | chr5_4:54335850-54335869 | None:intergenic | 35.0% | |
| ! | GCTCCTGGAAAGATATTTTT+GGG | + | chr5_4:54335905-54335924 | None:intergenic | 35.0% |
| ! | AGCTCCTGGAAAGATATTTT+TGG | + | chr5_4:54335906-54335925 | None:intergenic | 35.0% |
| !! | TTGTACTTTCTGAGGCTTAA+TGG | + | chr5_4:54335937-54335956 | None:intergenic | 35.0% |
| ATGTTAGACTTTATGGGAAG+TGG | - | chr5_4:54336003-54336022 | Msa0857810:intron | 35.0% | |
| ! | CGATCTTGAAAGGTAGATTT+TGG | - | chr5_4:54336239-54336258 | Msa0857810:intron | 35.0% |
| CACCAACTACATGTTCTTAT+TGG | - | chr5_4:54336264-54336283 | Msa0857810:intron | 35.0% | |
| GACCAATAAGAACATGTAGT+TGG | + | chr5_4:54336269-54336288 | None:intergenic | 35.0% | |
| GTCTACGGAATATGGTAATT+CGG | + | chr5_4:54336328-54336347 | None:intergenic | 35.0% | |
| TAATTGAAGGTTTGGACTTC+AGG | + | chr5_4:54336417-54336436 | None:intergenic | 35.0% | |
| ! | GCTCGTTCTAGATGTAAAAT+AGG | + | chr5_4:54336534-54336553 | None:intergenic | 35.0% |
| !! | TTTTACATCTAGAACGAGCA+TGG | - | chr5_4:54336535-54336554 | Msa0857810:intron | 35.0% |
| AATTCAAAACCAACCATAGC+AGG | + | chr5_4:54336664-54336683 | None:intergenic | 35.0% | |
| ACGACAATACCATTATAGAC+GGG | + | chr5_4:54336706-54336725 | None:intergenic | 35.0% | |
| CACGACAATACCATTATAGA+CGG | + | chr5_4:54336707-54336726 | None:intergenic | 35.0% | |
| CATTTCAGCAGATTTATGGA+GGG | + | chr5_4:54336857-54336876 | None:intergenic | 35.0% | |
| TCATTTCAGCAGATTTATGG+AGG | + | chr5_4:54336858-54336877 | None:intergenic | 35.0% | |
| ! | GGTAGCTTAGTTTGACAATA+TGG | - | chr5_4:54336908-54336927 | Msa0857810:intron | 35.0% |
| ATTGACATACACAGACTTGA+GGG | + | chr5_4:54336975-54336994 | None:intergenic | 35.0% | |
| TATTGACATACACAGACTTG+AGG | + | chr5_4:54336976-54336995 | None:intergenic | 35.0% | |
| CATCTATTGTAACTCGTCAA+AGG | - | chr5_4:54337150-54337169 | Msa0857810:intron | 35.0% | |
| CACAGCGAGTTAATTCAACA+TGG | - | chr5_4:54335322-54335341 | Msa0857810:CDS | 40.0% | |
| AGCGAGTTAATTCAACATGG+TGG | - | chr5_4:54335325-54335344 | Msa0857810:CDS | 40.0% | |
| GCGAGTTAATTCAACATGGT+GGG | - | chr5_4:54335326-54335345 | Msa0857810:CDS | 40.0% | |
| AGGACGTTGAGTTAGAAACT+AGG | - | chr5_4:54335481-54335500 | Msa0857810:CDS | 40.0% | |
| GGACGTTGAGTTAGAAACTA+GGG | - | chr5_4:54335482-54335501 | Msa0857810:CDS | 40.0% | |
| !!! | TTTTGAAACTACCTGCTGGT+TGG | + | chr5_4:54335529-54335548 | None:intergenic | 40.0% |
| CTGTTATGACCAAAGAGAGA+TGG | - | chr5_4:54335746-54335765 | Msa0857810:intron | 40.0% | |
| ACCTTTGCAGGATGTTCATT+GGG | + | chr5_4:54335796-54335815 | None:intergenic | 40.0% | |
| CAGGGAAACAATATTGAGCA+AGG | + | chr5_4:54335832-54335851 | None:intergenic | 40.0% | |
| GGGGAAAATGCAATGAAATC+AGG | + | chr5_4:54335851-54335870 | None:intergenic | 40.0% | |
| ! | TAATGGATCGTTTAAGCTCC+TGG | + | chr5_4:54335920-54335939 | None:intergenic | 40.0% |
| !! | TGACTGCACTACTGATTCTA+AGG | - | chr5_4:54335977-54335996 | Msa0857810:intron | 40.0% |
| AATCCAGTGTGCAAATCACA+TGG | + | chr5_4:54336183-54336202 | None:intergenic | 40.0% | |
| TCATTAGAACAGTTGTGCAC+TGG | + | chr5_4:54336291-54336310 | None:intergenic | 40.0% | |
| ACCATATTCCGTAGACAATG+AGG | - | chr5_4:54336332-54336351 | Msa0857810:intron | 40.0% | |
| ACCTCATTGTCTACGGAATA+TGG | + | chr5_4:54336336-54336355 | None:intergenic | 40.0% | |
| TACCACAACCTCATTGTCTA+CGG | + | chr5_4:54336343-54336362 | None:intergenic | 40.0% | |
| CAGCAACAATTTCACAAGCA+AGG | - | chr5_4:54336370-54336389 | Msa0857810:intron | 40.0% | |
| TATGCGCTTCGAAACCTAAA+GGG | + | chr5_4:54336607-54336626 | None:intergenic | 40.0% | |
| ATATGCGCTTCGAAACCTAA+AGG | + | chr5_4:54336608-54336627 | None:intergenic | 40.0% | |
| AGAATCAATCTCTAGCCTCT+TGG | + | chr5_4:54336638-54336657 | None:intergenic | 40.0% | |
| TAGCAGTATGTCCTTGAACT+CGG | + | chr5_4:54336734-54336753 | None:intergenic | 40.0% | |
| ! | GTTTTCTTCCTCCTTAACTC+AGG | - | chr5_4:54337040-54337059 | Msa0857810:CDS | 40.0% |
| TTCTGCAAATGCCTGAGTTA+AGG | + | chr5_4:54337054-54337073 | None:intergenic | 40.0% | |
| ATGAAACAGAAGCTCTTCGT+AGG | - | chr5_4:54337111-54337130 | Msa0857810:CDS | 40.0% | |
| TAATAACAGTTGGACACCTG+AGG | - | chr5_4:54337187-54337206 | Msa0857810:intron | 40.0% | |
| GTGTCAAATGCCACAATATG+TGG | - | chr5_4:54337242-54337261 | Msa0857810:CDS | 40.0% | |
| GTCACTACTACCACATATTG+TGG | + | chr5_4:54337255-54337274 | None:intergenic | 40.0% | |
| ! | TGTCTATCTGATGGTGTCTA+GGG | + | chr5_4:54337289-54337308 | None:intergenic | 40.0% |
| ! | TTGTCTATCTGATGGTGTCT+AGG | + | chr5_4:54337290-54337309 | None:intergenic | 40.0% |
| ACTTACTGAAACGTCTGGAT+CGG | + | chr5_4:54337321-54337340 | None:intergenic | 40.0% | |
| AGACGTTTCAGTAAGTATCC+CGG | - | chr5_4:54337325-54337344 | Msa0857810:CDS | 40.0% | |
| ! | ACATGCTCATGGTCTTTTAC+CGG | + | chr5_4:54337347-54337366 | None:intergenic | 40.0% |
| ! | AGAGTACGAGAGCTTTGATA+AGG | - | chr5_4:54337376-54337395 | Msa0857810:CDS | 40.0% |
| CTTGCACTGAAAAACCACAT+TGG | + | chr5_4:54337427-54337446 | None:intergenic | 40.0% | |
| CACAGCGAGTTAATTCAACA+TGG | - | chr5_4:54335322-54335341 | Msa0857810:CDS | 40.0% | |
| AGCGAGTTAATTCAACATGG+TGG | - | chr5_4:54335325-54335344 | Msa0857810:CDS | 40.0% | |
| GCGAGTTAATTCAACATGGT+GGG | - | chr5_4:54335326-54335345 | Msa0857810:CDS | 40.0% | |
| AGGACGTTGAGTTAGAAACT+AGG | - | chr5_4:54335481-54335500 | Msa0857810:CDS | 40.0% | |
| GGACGTTGAGTTAGAAACTA+GGG | - | chr5_4:54335482-54335501 | Msa0857810:CDS | 40.0% | |
| !!! | TTTTGAAACTACCTGCTGGT+TGG | + | chr5_4:54335529-54335548 | None:intergenic | 40.0% |
| CTGTTATGACCAAAGAGAGA+TGG | - | chr5_4:54335746-54335765 | Msa0857810:intron | 40.0% | |
| ACCTTTGCAGGATGTTCATT+GGG | + | chr5_4:54335796-54335815 | None:intergenic | 40.0% | |
| CAGGGAAACAATATTGAGCA+AGG | + | chr5_4:54335832-54335851 | None:intergenic | 40.0% | |
| GGGGAAAATGCAATGAAATC+AGG | + | chr5_4:54335851-54335870 | None:intergenic | 40.0% | |
| ! | TAATGGATCGTTTAAGCTCC+TGG | + | chr5_4:54335920-54335939 | None:intergenic | 40.0% |
| !! | TGACTGCACTACTGATTCTA+AGG | - | chr5_4:54335977-54335996 | Msa0857810:intron | 40.0% |
| AATCCAGTGTGCAAATCACA+TGG | + | chr5_4:54336183-54336202 | None:intergenic | 40.0% | |
| TCATTAGAACAGTTGTGCAC+TGG | + | chr5_4:54336291-54336310 | None:intergenic | 40.0% | |
| ACCATATTCCGTAGACAATG+AGG | - | chr5_4:54336332-54336351 | Msa0857810:intron | 40.0% | |
| ACCTCATTGTCTACGGAATA+TGG | + | chr5_4:54336336-54336355 | None:intergenic | 40.0% | |
| TACCACAACCTCATTGTCTA+CGG | + | chr5_4:54336343-54336362 | None:intergenic | 40.0% | |
| CAGCAACAATTTCACAAGCA+AGG | - | chr5_4:54336370-54336389 | Msa0857810:intron | 40.0% | |
| TATGCGCTTCGAAACCTAAA+GGG | + | chr5_4:54336607-54336626 | None:intergenic | 40.0% | |
| ATATGCGCTTCGAAACCTAA+AGG | + | chr5_4:54336608-54336627 | None:intergenic | 40.0% | |
| AGAATCAATCTCTAGCCTCT+TGG | + | chr5_4:54336638-54336657 | None:intergenic | 40.0% | |
| TAGCAGTATGTCCTTGAACT+CGG | + | chr5_4:54336734-54336753 | None:intergenic | 40.0% | |
| ! | GTTTTCTTCCTCCTTAACTC+AGG | - | chr5_4:54337040-54337059 | Msa0857810:CDS | 40.0% |
| TTCTGCAAATGCCTGAGTTA+AGG | + | chr5_4:54337054-54337073 | None:intergenic | 40.0% | |
| ATGAAACAGAAGCTCTTCGT+AGG | - | chr5_4:54337111-54337130 | Msa0857810:CDS | 40.0% | |
| TAATAACAGTTGGACACCTG+AGG | - | chr5_4:54337187-54337206 | Msa0857810:intron | 40.0% | |
| GTGTCAAATGCCACAATATG+TGG | - | chr5_4:54337242-54337261 | Msa0857810:CDS | 40.0% | |
| GTCACTACTACCACATATTG+TGG | + | chr5_4:54337255-54337274 | None:intergenic | 40.0% | |
| ! | TGTCTATCTGATGGTGTCTA+GGG | + | chr5_4:54337289-54337308 | None:intergenic | 40.0% |
| ! | TTGTCTATCTGATGGTGTCT+AGG | + | chr5_4:54337290-54337309 | None:intergenic | 40.0% |
| ACTTACTGAAACGTCTGGAT+CGG | + | chr5_4:54337321-54337340 | None:intergenic | 40.0% | |
| AGACGTTTCAGTAAGTATCC+CGG | - | chr5_4:54337325-54337344 | Msa0857810:CDS | 40.0% | |
| ! | ACATGCTCATGGTCTTTTAC+CGG | + | chr5_4:54337347-54337366 | None:intergenic | 40.0% |
| ! | AGAGTACGAGAGCTTTGATA+AGG | - | chr5_4:54337376-54337395 | Msa0857810:CDS | 40.0% |
| CTTGCACTGAAAAACCACAT+TGG | + | chr5_4:54337427-54337446 | None:intergenic | 40.0% | |
| CCAGACTCTAAGTTTCTCAG+TGG | + | chr5_4:54335366-54335385 | None:intergenic | 45.0% | |
| CCACTGAGAAACTTAGAGTC+TGG | - | chr5_4:54335363-54335382 | Msa0857810:CDS | 45.0% | |
| ! | AACTTAGAGTCTGGAGCAAC+TGG | - | chr5_4:54335372-54335391 | Msa0857810:CDS | 45.0% |
| TCCTACAAGGAGCTCTATTG+AGG | - | chr5_4:54335461-54335480 | Msa0857810:CDS | 45.0% | |
| TCCTCAATAGAGCTCCTTGT+AGG | + | chr5_4:54335465-54335484 | None:intergenic | 45.0% | |
| TTTCATGACTCTCCCTTTGC+AGG | - | chr5_4:54335597-54335616 | Msa0857810:CDS | 45.0% | |
| ! | GGTTTTTGTAGGCCTGCAAA+GGG | + | chr5_4:54335612-54335631 | None:intergenic | 45.0% |
| ! | TGGTTTTTGTAGGCCTGCAA+AGG | + | chr5_4:54335613-54335632 | None:intergenic | 45.0% |
| CCTGAACAAAACCCCAGAAT+CGG | + | chr5_4:54335694-54335713 | None:intergenic | 45.0% | |
| CACAAGTCCTAGGGTAAACA+GGG | + | chr5_4:54335720-54335739 | None:intergenic | 45.0% | |
| ACACAAGTCCTAGGGTAAAC+AGG | + | chr5_4:54335721-54335740 | None:intergenic | 45.0% | |
| CAGTTTGCACACAAGTCCTA+GGG | + | chr5_4:54335729-54335748 | None:intergenic | 45.0% | |
| ACAGTTTGCACACAAGTCCT+AGG | + | chr5_4:54335730-54335749 | None:intergenic | 45.0% | |
| ACCCAATGAACATCCTGCAA+AGG | - | chr5_4:54335792-54335811 | Msa0857810:intron | 45.0% | |
| GACCTTTGCAGGATGTTCAT+TGG | + | chr5_4:54335797-54335816 | None:intergenic | 45.0% | |
| CATCCTGCAAAGGTCTAATC+TGG | - | chr5_4:54335802-54335821 | Msa0857810:intron | 45.0% | |
| CAACCAGATTAGACCTTTGC+AGG | + | chr5_4:54335808-54335827 | None:intergenic | 45.0% | |
| ACCATTGAATCTTCCTCACG+CGG | - | chr5_4:54336034-54336053 | Msa0857810:CDS | 45.0% | |
| TTCCGTAGACAATGAGGTTG+TGG | - | chr5_4:54336338-54336357 | Msa0857810:intron | 45.0% | |
| GTAGACAATGAGGTTGTGGT+AGG | - | chr5_4:54336342-54336361 | Msa0857810:intron | 45.0% | |
| TCTGAGAAATCTCTTCCACC+AGG | - | chr5_4:54336574-54336593 | Msa0857810:intron | 45.0% | |
| ! | GATTGATTCTGCACCTGCTA+TGG | - | chr5_4:54336648-54336667 | Msa0857810:intron | 45.0% |
| CATTATAGACGGGATGTGCT+CGG | + | chr5_4:54336696-54336715 | None:intergenic | 45.0% | |
| GTTCAAGGACATACTGCTAG+AGG | - | chr5_4:54336735-54336754 | Msa0857810:CDS | 45.0% | |
| TGCAAATGCCTGAGTTAAGG+AGG | + | chr5_4:54337051-54337070 | None:intergenic | 45.0% | |
| AAACAGAAGCTCTTCGTAGG+TGG | - | chr5_4:54337114-54337133 | Msa0857810:CDS | 45.0% | |
| TGGACATCATTTGACACCTC+AGG | + | chr5_4:54337206-54337225 | None:intergenic | 45.0% | |
| ! | GTCTATCTGATGGTGTCTAG+GGG | + | chr5_4:54337288-54337307 | None:intergenic | 45.0% |
| GGGATACTTACTGAAACGTC+TGG | + | chr5_4:54337326-54337345 | None:intergenic | 45.0% | |
| ! | CATGCTCATGGTCTTTTACC+GGG | + | chr5_4:54337346-54337365 | None:intergenic | 45.0% |
| GCATCGCTTTGTCAACAAAG+AGG | + | chr5_4:54337405-54337424 | None:intergenic | 45.0% | |
| TTGACAAAGCGATGCCAATG+TGG | - | chr5_4:54337410-54337429 | Msa0857810:CDS | 45.0% | |
| CCAGACTCTAAGTTTCTCAG+TGG | + | chr5_4:54335366-54335385 | None:intergenic | 45.0% | |
| CCACTGAGAAACTTAGAGTC+TGG | - | chr5_4:54335363-54335382 | Msa0857810:CDS | 45.0% | |
| ! | AACTTAGAGTCTGGAGCAAC+TGG | - | chr5_4:54335372-54335391 | Msa0857810:CDS | 45.0% |
| TCCTACAAGGAGCTCTATTG+AGG | - | chr5_4:54335461-54335480 | Msa0857810:CDS | 45.0% | |
| TCCTCAATAGAGCTCCTTGT+AGG | + | chr5_4:54335465-54335484 | None:intergenic | 45.0% | |
| TTTCATGACTCTCCCTTTGC+AGG | - | chr5_4:54335597-54335616 | Msa0857810:CDS | 45.0% | |
| ! | GGTTTTTGTAGGCCTGCAAA+GGG | + | chr5_4:54335612-54335631 | None:intergenic | 45.0% |
| ! | TGGTTTTTGTAGGCCTGCAA+AGG | + | chr5_4:54335613-54335632 | None:intergenic | 45.0% |
| CCTGAACAAAACCCCAGAAT+CGG | + | chr5_4:54335694-54335713 | None:intergenic | 45.0% | |
| CACAAGTCCTAGGGTAAACA+GGG | + | chr5_4:54335720-54335739 | None:intergenic | 45.0% | |
| ACACAAGTCCTAGGGTAAAC+AGG | + | chr5_4:54335721-54335740 | None:intergenic | 45.0% | |
| CAGTTTGCACACAAGTCCTA+GGG | + | chr5_4:54335729-54335748 | None:intergenic | 45.0% | |
| ACAGTTTGCACACAAGTCCT+AGG | + | chr5_4:54335730-54335749 | None:intergenic | 45.0% | |
| ACCCAATGAACATCCTGCAA+AGG | - | chr5_4:54335792-54335811 | Msa0857810:intron | 45.0% | |
| GACCTTTGCAGGATGTTCAT+TGG | + | chr5_4:54335797-54335816 | None:intergenic | 45.0% | |
| CATCCTGCAAAGGTCTAATC+TGG | - | chr5_4:54335802-54335821 | Msa0857810:intron | 45.0% | |
| CAACCAGATTAGACCTTTGC+AGG | + | chr5_4:54335808-54335827 | None:intergenic | 45.0% | |
| ACCATTGAATCTTCCTCACG+CGG | - | chr5_4:54336034-54336053 | Msa0857810:CDS | 45.0% | |
| TTCCGTAGACAATGAGGTTG+TGG | - | chr5_4:54336338-54336357 | Msa0857810:intron | 45.0% | |
| GTAGACAATGAGGTTGTGGT+AGG | - | chr5_4:54336342-54336361 | Msa0857810:intron | 45.0% | |
| TCTGAGAAATCTCTTCCACC+AGG | - | chr5_4:54336574-54336593 | Msa0857810:intron | 45.0% | |
| ! | GATTGATTCTGCACCTGCTA+TGG | - | chr5_4:54336648-54336667 | Msa0857810:intron | 45.0% |
| CATTATAGACGGGATGTGCT+CGG | + | chr5_4:54336696-54336715 | None:intergenic | 45.0% | |
| GTTCAAGGACATACTGCTAG+AGG | - | chr5_4:54336735-54336754 | Msa0857810:CDS | 45.0% | |
| TGCAAATGCCTGAGTTAAGG+AGG | + | chr5_4:54337051-54337070 | None:intergenic | 45.0% | |
| AAACAGAAGCTCTTCGTAGG+TGG | - | chr5_4:54337114-54337133 | Msa0857810:CDS | 45.0% | |
| TGGACATCATTTGACACCTC+AGG | + | chr5_4:54337206-54337225 | None:intergenic | 45.0% | |
| ! | GTCTATCTGATGGTGTCTAG+GGG | + | chr5_4:54337288-54337307 | None:intergenic | 45.0% |
| GGGATACTTACTGAAACGTC+TGG | + | chr5_4:54337326-54337345 | None:intergenic | 45.0% | |
| ! | CATGCTCATGGTCTTTTACC+GGG | + | chr5_4:54337346-54337365 | None:intergenic | 45.0% |
| GCATCGCTTTGTCAACAAAG+AGG | + | chr5_4:54337405-54337424 | None:intergenic | 45.0% | |
| TTGACAAAGCGATGCCAATG+TGG | - | chr5_4:54337410-54337429 | Msa0857810:CDS | 45.0% | |
| ! | TTAGAGTCTGGAGCAACTGG+TGG | - | chr5_4:54335375-54335394 | Msa0857810:CDS | 50.0% |
| ! | GAAACTACCTGCTGGTTGGT+TGG | + | chr5_4:54335525-54335544 | None:intergenic | 50.0% |
| TCATCCAAAGGGTCCGATTC+TGG | - | chr5_4:54335678-54335697 | Msa0857810:CDS | 50.0% | |
| CATCCAAAGGGTCCGATTCT+GGG | - | chr5_4:54335679-54335698 | Msa0857810:CDS | 50.0% | |
| ATCCAAAGGGTCCGATTCTG+GGG | - | chr5_4:54335680-54335699 | Msa0857810:intron | 50.0% | |
| !!! | CCGATTCTGGGGTTTTGTTC+AGG | - | chr5_4:54335691-54335710 | Msa0857810:intron | 50.0% |
| TTCTCGGAGCCATCTCTCTT+TGG | + | chr5_4:54335758-54335777 | None:intergenic | 50.0% | |
| AAAGAGAGATGGCTCCGAGA+AGG | - | chr5_4:54335757-54335776 | Msa0857810:intron | 50.0% | |
| AAGAGAGATGGCTCCGAGAA+GGG | - | chr5_4:54335758-54335777 | Msa0857810:intron | 50.0% | |
| GTTTCACTTGCAGCCCTTCT+CGG | + | chr5_4:54335774-54335793 | None:intergenic | 50.0% | |
| ACCGCGTGAGGAAGATTCAA+TGG | + | chr5_4:54336038-54336057 | None:intergenic | 50.0% | |
| AATCTTCCTCACGCGGTGAA+TGG | - | chr5_4:54336041-54336060 | Msa0857810:CDS | 50.0% | |
| ACTATTCCATTCACCGCGTG+AGG | + | chr5_4:54336050-54336069 | None:intergenic | 50.0% | |
| TGCAAATCACATGGTGCACC+GGG | + | chr5_4:54336174-54336193 | None:intergenic | 50.0% | |
| GTGCAAATCACATGGTGCAC+CGG | + | chr5_4:54336175-54336194 | None:intergenic | 50.0% | |
| ! | GCACCATGTGATTTGCACAC+TGG | - | chr5_4:54336177-54336196 | Msa0857810:CDS | 50.0% |
| CTAGAACGAGCATGGTCAAG+TGG | - | chr5_4:54336543-54336562 | Msa0857810:intron | 50.0% | |
| AGCATGGTCAAGTGGATGTC+TGG | - | chr5_4:54336551-54336570 | Msa0857810:intron | 50.0% | |
| !! | AACCTAAAGGGCACTGTACC+TGG | + | chr5_4:54336595-54336614 | None:intergenic | 50.0% |
| GCGCATATTCTGTTGCCAAG+AGG | - | chr5_4:54336620-54336639 | Msa0857810:intron | 50.0% | |
| GATTCTGCACCTGCTATGGT+TGG | - | chr5_4:54336652-54336671 | Msa0857810:intron | 50.0% | |
| CGAGCACATCCCGTCTATAA+TGG | - | chr5_4:54336694-54336713 | Msa0857810:CDS | 50.0% | |
| ! | TTAGAGTCTGGAGCAACTGG+TGG | - | chr5_4:54335375-54335394 | Msa0857810:CDS | 50.0% |
| ! | GAAACTACCTGCTGGTTGGT+TGG | + | chr5_4:54335525-54335544 | None:intergenic | 50.0% |
| TCATCCAAAGGGTCCGATTC+TGG | - | chr5_4:54335678-54335697 | Msa0857810:CDS | 50.0% | |
| CATCCAAAGGGTCCGATTCT+GGG | - | chr5_4:54335679-54335698 | Msa0857810:CDS | 50.0% | |
| ATCCAAAGGGTCCGATTCTG+GGG | - | chr5_4:54335680-54335699 | Msa0857810:intron | 50.0% | |
| !!! | CCGATTCTGGGGTTTTGTTC+AGG | - | chr5_4:54335691-54335710 | Msa0857810:intron | 50.0% |
| TTCTCGGAGCCATCTCTCTT+TGG | + | chr5_4:54335758-54335777 | None:intergenic | 50.0% | |
| AAAGAGAGATGGCTCCGAGA+AGG | - | chr5_4:54335757-54335776 | Msa0857810:intron | 50.0% | |
| AAGAGAGATGGCTCCGAGAA+GGG | - | chr5_4:54335758-54335777 | Msa0857810:intron | 50.0% | |
| GTTTCACTTGCAGCCCTTCT+CGG | + | chr5_4:54335774-54335793 | None:intergenic | 50.0% | |
| ACCGCGTGAGGAAGATTCAA+TGG | + | chr5_4:54336038-54336057 | None:intergenic | 50.0% | |
| AATCTTCCTCACGCGGTGAA+TGG | - | chr5_4:54336041-54336060 | Msa0857810:CDS | 50.0% | |
| ACTATTCCATTCACCGCGTG+AGG | + | chr5_4:54336050-54336069 | None:intergenic | 50.0% | |
| TGCAAATCACATGGTGCACC+GGG | + | chr5_4:54336174-54336193 | None:intergenic | 50.0% | |
| GTGCAAATCACATGGTGCAC+CGG | + | chr5_4:54336175-54336194 | None:intergenic | 50.0% | |
| ! | GCACCATGTGATTTGCACAC+TGG | - | chr5_4:54336177-54336196 | Msa0857810:CDS | 50.0% |
| CTAGAACGAGCATGGTCAAG+TGG | - | chr5_4:54336543-54336562 | Msa0857810:intron | 50.0% | |
| AGCATGGTCAAGTGGATGTC+TGG | - | chr5_4:54336551-54336570 | Msa0857810:intron | 50.0% | |
| !! | AACCTAAAGGGCACTGTACC+TGG | + | chr5_4:54336595-54336614 | None:intergenic | 50.0% |
| GCGCATATTCTGTTGCCAAG+AGG | - | chr5_4:54336620-54336639 | Msa0857810:intron | 50.0% | |
| GATTCTGCACCTGCTATGGT+TGG | - | chr5_4:54336652-54336671 | Msa0857810:intron | 50.0% | |
| CGAGCACATCCCGTCTATAA+TGG | - | chr5_4:54336694-54336713 | Msa0857810:CDS | 50.0% | |
| ACCTCTTCCAACCAACCAGC+AGG | - | chr5_4:54335515-54335534 | Msa0857810:CDS | 55.0% | |
| ! | ACCTGCTGGTTGGTTGGAAG+AGG | + | chr5_4:54335519-54335538 | None:intergenic | 55.0% |
| AACCCCAGAATCGGACCCTT+TGG | + | chr5_4:54335685-54335704 | None:intergenic | 55.0% | |
| CAGGTCACCCTGTTTACCCT+AGG | - | chr5_4:54335710-54335729 | Msa0857810:intron | 55.0% | |
| !! | CTAAAGGGCACTGTACCTGG+TGG | + | chr5_4:54336592-54336611 | None:intergenic | 55.0% |
| CACCAGGTACAGTGCCCTTT+AGG | - | chr5_4:54336590-54336609 | Msa0857810:intron | 55.0% | |
| TGTCGTGTGTGCCGAGTTCA+AGG | - | chr5_4:54336720-54336739 | Msa0857810:CDS | 55.0% | |
| ACCTCTTCCAACCAACCAGC+AGG | - | chr5_4:54335515-54335534 | Msa0857810:CDS | 55.0% | |
| ! | ACCTGCTGGTTGGTTGGAAG+AGG | + | chr5_4:54335519-54335538 | None:intergenic | 55.0% |
| AACCCCAGAATCGGACCCTT+TGG | + | chr5_4:54335685-54335704 | None:intergenic | 55.0% | |
| CAGGTCACCCTGTTTACCCT+AGG | - | chr5_4:54335710-54335729 | Msa0857810:intron | 55.0% | |
| !! | CTAAAGGGCACTGTACCTGG+TGG | + | chr5_4:54336592-54336611 | None:intergenic | 55.0% |
| CACCAGGTACAGTGCCCTTT+AGG | - | chr5_4:54336590-54336609 | Msa0857810:intron | 55.0% | |
| TGTCGTGTGTGCCGAGTTCA+AGG | - | chr5_4:54336720-54336739 | Msa0857810:CDS | 55.0% | |
| ! | GTCTGGAGCAACTGGTGGTG+TGG | - | chr5_4:54335380-54335399 | Msa0857810:CDS | 60.0% |
| ! | GTCTGGAGCAACTGGTGGTG+TGG | - | chr5_4:54335380-54335399 | Msa0857810:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 54335300 | 54337460 | 54335300 | ID=Msa0857810;Name=Msa0857810 |
| chr5_4 | mRNA | 54335300 | 54337460 | 54335300 | ID=Msa0857810-mRNA-1;Parent=Msa0857810;Name=Msa0857810-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.5|0.2|0.6|1|1|5|0|398 |
| chr5_4 | exon | 54337224 | 54337460 | 54337224 | ID=Msa0857810-mRNA-1:exon:16798;Parent=Msa0857810-mRNA-1 |
| chr5_4 | exon | 54336947 | 54337141 | 54336947 | ID=Msa0857810-mRNA-1:exon:16797;Parent=Msa0857810-mRNA-1 |
| chr5_4 | exon | 54336684 | 54336839 | 54336684 | ID=Msa0857810-mRNA-1:exon:16796;Parent=Msa0857810-mRNA-1 |
| chr5_4 | exon | 54336004 | 54336213 | 54336004 | ID=Msa0857810-mRNA-1:exon:16795;Parent=Msa0857810-mRNA-1 |
| chr5_4 | exon | 54335300 | 54335698 | 54335300 | ID=Msa0857810-mRNA-1:exon:16794;Parent=Msa0857810-mRNA-1 |
| chr5_4 | CDS | 54337224 | 54337460 | 54337224 | ID=Msa0857810-mRNA-1:cds;Parent=Msa0857810-mRNA-1 |
| chr5_4 | CDS | 54336947 | 54337141 | 54336947 | ID=Msa0857810-mRNA-1:cds;Parent=Msa0857810-mRNA-1 |
| chr5_4 | CDS | 54336684 | 54336839 | 54336684 | ID=Msa0857810-mRNA-1:cds;Parent=Msa0857810-mRNA-1 |
| chr5_4 | CDS | 54336004 | 54336213 | 54336004 | ID=Msa0857810-mRNA-1:cds;Parent=Msa0857810-mRNA-1 |
| chr5_4 | CDS | 54335300 | 54335698 | 54335300 | ID=Msa0857810-mRNA-1:cds;Parent=Msa0857810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
