AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417080 MtrunA17_Chr3g0114371 89.958 239 18 2 89 325 1 235 7.34e-137 397
Msa0417080 MtrunA17_Chr3g0114381 87.013 154 19 1 356 509 110 262 5.14e-89 276
Msa0417080 MtrunA17_Chr7g0259481 62.694 193 49 3 156 325 219 411 2.73e-72 238
Msa0417080 MtrunA17_Chr7g0259481 56.667 120 45 3 38 154 4 119 4.54e-30 122
Msa0417080 MtrunA17_Chr8g0338931 70.513 156 45 1 354 509 11 165 6.93e-71 228
Msa0417080 MtrunA17_Chr8g0338931 64.583 48 17 0 4 51 239 286 4.95e-12 67.0
Msa0417080 MtrunA17_Chr8g0338801 60.963 187 65 4 363 542 80 265 2.65e-69 226
Msa0417080 MtrunA17_Chr2g0287241 72.848 151 21 4 193 325 19 167 1.25e-60 199
Msa0417080 MtrunA17_Chr8g0338841 62.195 164 49 3 354 514 317 470 4.97e-59 204
Msa0417080 MtrunA17_Chr8g0352221 70.270 148 40 2 370 514 806 952 8.77e-59 211
Msa0417080 MtrunA17_Chr3g0085731 62.987 154 56 1 356 509 883 1035 1.69e-54 199
Msa0417080 MtrunA17_Chr3g0085531 59.740 154 58 2 356 509 76 225 4.45e-54 186
Msa0417080 MtrunA17_Chr2g0296451 64.052 153 54 1 356 508 394 545 4.82e-53 189
Msa0417080 MtrunA17_Chr8g0338881 67.857 140 43 2 356 494 905 1043 2.37e-52 192
Msa0417080 MtrunA17_Chr8g0338901 64.189 148 52 1 362 509 903 1049 3.58e-52 192
Msa0417080 MtrunA17_Chr8g0338981 62.162 148 55 1 362 509 880 1026 3.52e-51 189
Msa0417080 MtrunA17_Chr8g0339031 59.259 162 62 2 356 517 882 1039 8.35e-51 187
Msa0417080 MtrunA17_Chr8g0339021 60.510 157 60 2 354 510 864 1018 1.44e-49 184
Msa0417080 MtrunA17_Chr8g0370511 61.783 157 58 2 354 510 874 1028 1.78e-49 184
Msa0417080 MtrunA17_Chr5g0430541 51.220 205 92 6 311 509 336 538 3.37e-49 179
Msa0417080 MtrunA17_Chr5g0414761 63.380 142 51 1 368 509 673 813 4.26e-49 182
Msa0417080 MtrunA17_Chr8g0339011 58.442 154 62 2 356 509 871 1022 3.06e-48 180
Msa0417080 MtrunA17_Chr5g0420341 58.599 157 63 2 354 510 875 1029 2.56e-47 177
Msa0417080 MtrunA17_Chr8g0352211 63.504 137 49 1 356 492 805 940 9.19e-47 176
Msa0417080 MtrunA17_Chr7g0223531 55.828 163 63 2 356 510 891 1052 3.27e-45 171
Msa0417080 MtrunA17_Chr5g0420331 58.389 149 60 2 354 502 875 1021 2.42e-44 168
Msa0417080 MtrunA17_Chr8g0343781 78.049 82 17 1 398 479 1 81 2.57e-37 132
Msa0417080 MtrunA17_Chr3g0116821 46.988 166 66 3 185 330 293 456 1.47e-36 142
Msa0417080 MtrunA17_Chr3g0116821 54.667 75 34 0 80 154 74 148 5.31e-17 84.0
Msa0417080 MtrunA17_Chr3g0135571 43.651 126 69 2 367 492 10 133 2.68e-27 108
Msa0417080 MtrunA17_Chr4g0005851 41.958 143 81 2 354 496 918 1058 1.20e-26 115
Msa0417080 MtrunA17_Chr7g0257531 39.716 141 83 2 354 494 532 670 1.21e-26 114
Msa0417080 MtrunA17_Chr3g0135511 42.857 126 70 2 367 492 10 133 3.98e-26 105
Msa0417080 MtrunA17_Chr4g0005591 42.857 140 78 2 354 493 960 1097 8.93e-26 112
Msa0417080 MtrunA17_Chr3g0135541 43.651 126 69 2 367 492 162 285 1.64e-25 107
Msa0417080 MtrunA17_Chr4g0009041 42.308 130 74 1 363 492 1391 1519 3.87e-25 110
Msa0417080 MtrunA17_Chr2g0287231 81.667 60 11 0 96 155 14 73 1.39e-24 102
Msa0417080 MtrunA17_Chr6g0455131 39.394 132 79 1 354 485 976 1106 1.47e-24 108
Msa0417080 MtrunA17_Chr6g0454911 39.850 133 78 2 353 485 109 239 3.21e-24 102
Msa0417080 MtrunA17_Chr7g0234901 43.077 130 71 3 367 495 420 547 7.00e-24 105
Msa0417080 MtrunA17_Chr4g0005871 40.769 130 75 2 354 483 1008 1135 7.33e-24 106
Msa0417080 MtrunA17_Chr4g0009141 39.416 137 82 1 362 498 1402 1537 1.03e-23 106
Msa0417080 MtrunA17_Chr4g0009011 41.481 135 76 2 359 493 169 300 1.11e-23 102
Msa0417080 MtrunA17_Chr6g0454851 39.568 139 82 2 354 492 975 1111 1.18e-23 105
Msa0417080 MtrunA17_Chr6g0454951 38.125 160 95 3 353 510 968 1125 1.82e-23 105
Msa0417080 MtrunA17_Chr4g0014821 40.000 125 72 3 368 492 7 128 2.73e-23 97.1
Msa0417080 MtrunA17_Chr6g0455221 38.168 131 79 2 353 483 987 1115 1.10e-22 102
Msa0417080 MtrunA17_Chr6g0454961 43.333 120 67 1 374 493 939 1057 1.60e-22 102
Msa0417080 MtrunA17_Chr4g0009301 40.876 137 78 3 365 500 1425 1559 3.25e-22 101
Msa0417080 MtrunA17_Chr7g0255681 45.833 120 62 3 367 485 1912 2029 4.47e-22 101
Msa0417080 MtrunA17_Chr4g0005891 42.537 134 75 2 354 487 932 1063 5.74e-22 100
Msa0417080 MtrunA17_Chr6g0455251 42.735 117 65 2 367 483 1010 1124 8.50e-22 100
Msa0417080 MtrunA17_Chr6g0455191 43.590 117 64 2 367 483 1213 1327 9.48e-22 100
Msa0417080 MtrunA17_Chr4g0009101 41.803 122 70 1 372 493 1428 1548 1.51e-21 99.4
Msa0417080 MtrunA17_Chr6g0455551 41.667 120 69 1 374 493 987 1105 2.77e-21 98.6
Msa0417080 MtrunA17_Chr6g0454821 40.800 125 73 1 369 493 939 1062 3.27e-21 98.2
Msa0417080 MtrunA17_Chr6g0455211 37.143 140 86 2 353 492 916 1053 3.31e-21 98.2
Msa0417080 MtrunA17_Chr4g0009171 39.516 124 74 1 377 500 1622 1744 4.67e-21 97.8
Msa0417080 MtrunA17_Chr6g0454971 39.231 130 77 2 354 483 915 1042 5.23e-21 97.4
Msa0417080 MtrunA17_Chr4g0009211 51.724 87 41 1 397 483 5 90 1.13e-19 85.5
Msa0417080 MtrunA17_Chr4g0010711 39.669 121 72 1 367 487 1405 1524 1.15e-19 93.6
Msa0417080 MtrunA17_Chr4g0009241 34.000 150 98 1 363 512 1407 1555 1.33e-19 93.2
Msa0417080 MtrunA17_Chr6g0454831 34.483 145 93 2 354 498 890 1032 1.73e-19 92.8
Msa0417080 MtrunA17_Chr4g0009361 44.643 112 61 1 372 483 408 518 2.97e-19 91.7
Msa0417080 MtrunA17_Chr6g0454861 47.619 84 43 1 402 485 1 83 1.08e-18 81.6
Msa0417080 MtrunA17_Chr4g0009401 39.130 138 82 2 364 500 1385 1521 1.11e-18 90.5
Msa0417080 MtrunA17_Chr4g0008981 39.252 107 64 1 397 503 5 110 5.53e-17 78.6
Msa0417080 MtrunA17_Chr6g0455031 37.692 130 65 5 367 483 905 1031 1.11e-16 84.0
Msa0417080 MtrunA17_Chr6g0454881 40.278 72 42 1 423 494 1 71 1.13e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417080 AT4G02930.1 63.402 194 47 4 156 325 223 416 2.46e-70 233
Msa0417080 AT4G02930.1 83.824 68 11 0 87 154 56 123 5.68e-28 117
Msa0417080 AT4G20360.1 43.128 211 82 6 156 330 235 443 4.91e-39 149
Msa0417080 AT4G20360.1 39.062 128 70 3 27 154 16 135 6.94e-18 87.0
Msa0417080 AT4G20360.2 43.128 211 82 6 156 330 235 443 4.91e-39 149
Msa0417080 AT4G20360.2 39.062 128 70 3 27 154 16 135 6.94e-18 87.0

Find 114 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATCTTCATCATTAA+AGG 0.115786 3_2:+64196141 None:intergenic
CGGGTGGAAATTATCCTTCT+TGG 0.269932 3_2:-64196363 Msa0417080:CDS
ATCAGGTAATTGTACCTTTC+CGG 0.301248 3_2:+64197974 None:intergenic
TGTTCTTGCAGTCTCATGTT+AGG 0.313247 3_2:-64198853 Msa0417080:intron
CTTCCAATTGTGAGAGGTTC+AGG 0.314697 3_2:-64198830 Msa0417080:CDS
CATGTCAATGTTGGCACTAT+TGG 0.325935 3_2:-64199178 Msa0417080:CDS
GCACATGCATATATAATATC+TGG 0.326271 3_2:+64195929 None:intergenic
GGACTCCAAATCAACATTCT+AGG 0.328906 3_2:+64197560 None:intergenic
CATCACCAAAGTCCAATAAA+AGG 0.330270 3_2:-64201097 Msa0417080:CDS
TAAGGAGACGGCTGTTTATC+TGG 0.336048 3_2:-64196047 Msa0417080:CDS
CCTTCTTGGTTAGCCTATAC+AGG 0.338116 3_2:-64196349 Msa0417080:CDS
CTATATGTACAAATCATGTT+AGG 0.348311 3_2:-64195865 Msa0417080:CDS
TATAGTGATTTGTTCCTTAC+GGG 0.351151 3_2:-64196382 Msa0417080:CDS
AGAGAGGAATTACTATTGAT+AGG 0.353059 3_2:-64198949 Msa0417080:CDS
ACGGCTGTTTATCTGGTATA+TGG 0.365310 3_2:-64196040 Msa0417080:CDS
AACAGGACAAATATTTACTT+TGG 0.366981 3_2:-64197631 Msa0417080:intron
ATCATCAACTAACATGGAAT+TGG 0.368164 3_2:-64195969 Msa0417080:CDS
ATGGGAGTTGAATGCCTTAC+TGG 0.370487 3_2:-64196229 Msa0417080:CDS
AGAAGATGCATTGTTGTTGA+TGG 0.373565 3_2:+64199964 None:intergenic
ATATAGAAAATATCTTCTAT+TGG 0.374830 3_2:+64198710 None:intergenic
TGTCCTTTAATGATGAAGAT+TGG 0.388089 3_2:-64196144 Msa0417080:CDS
TTATAGTGATTTGTTCCTTA+CGG 0.395849 3_2:-64196383 Msa0417080:CDS
GAAAGATATCTTGAAACTAA+TGG 0.400329 3_2:-64198774 Msa0417080:CDS
ACAGGACAAATATTTACTTT+GGG 0.404677 3_2:-64197630 Msa0417080:intron
ATTCTTGTATCATAAGCATA+TGG 0.408464 3_2:+64196419 None:intergenic
TCGGTTTATGGGAAGGGGCG+TGG 0.421024 3_2:-64198584 Msa0417080:intron
CCTTTGAAGACTACTGTAAC+TGG 0.424920 3_2:-64198400 Msa0417080:CDS
TGAAAGTGGCCATGGTTCTC+TGG 0.426788 3_2:+64199930 None:intergenic
ATATCTGGATGTATATTTGA+TGG 0.427322 3_2:+64195944 None:intergenic
AGACCTGAACCTCTCACAAT+TGG 0.431602 3_2:+64198827 None:intergenic
GAACAAATCACTATAATTGT+AGG 0.436667 3_2:+64196390 None:intergenic
CTGAGGACGGCAGACATTAC+CGG 0.439899 3_2:-64197993 Msa0417080:CDS
CGACAAGGCTCCTGAGGAAA+AGG 0.440937 3_2:-64198972 Msa0417080:CDS
TTCATCAAAAGCAATGGCCT+TGG 0.441158 3_2:+64198997 None:intergenic
CAATTTCCATTGTAATTGAC+TGG 0.443825 3_2:+64196017 None:intergenic
GTCATCACCTATCATTCAAA+TGG 0.446646 3_2:-64201123 Msa0417080:CDS
ATAACCATCTTGACATCATC+AGG 0.448855 3_2:+64197957 None:intergenic
TGAGCATGGATTGATTGTTA+AGG 0.451330 3_2:-64196065 Msa0417080:CDS
TTTAAGAAACTTGTGGATAG+AGG 0.451784 3_2:-64198367 Msa0417080:CDS
CGGTAATGTCTGCCGTCCTC+AGG 0.456421 3_2:+64197994 None:intergenic
AACATTCTAGGAAAGGACTT+TGG 0.460402 3_2:+64197572 None:intergenic
GAGAGGAATTACTATTGATA+GGG 0.469291 3_2:-64198948 Msa0417080:intron
AAGTTGCACGAGATATGAAA+TGG 0.471511 3_2:+64199999 None:intergenic
GGTCTGGCAAGCTGTCGAAC+AGG 0.475682 3_2:+64198743 None:intergenic
CAAATATTTACTTTGGGAGA+AGG 0.479143 3_2:-64197624 Msa0417080:CDS
GATGGCTCCATTTGAATGAT+AGG 0.488887 3_2:+64201116 None:intergenic
GGATATTGATTATCAAATGA+AGG 0.494533 3_2:-64196293 Msa0417080:CDS
CTAACATGATTTGTACATAT+AGG 0.498000 3_2:+64195866 None:intergenic
TCAAATCTTTATCTCCATGT+TGG 0.498406 3_2:+64201027 None:intergenic
CAACTCCTGCAGCAACTGTC+CGG 0.506240 3_2:+64197598 None:intergenic
TGAAGGTCCTTCACCTGTAT+AGG 0.512120 3_2:+64196336 None:intergenic
AAGATCTCCACTTCGTCGCT+AGG 0.512593 3_2:+64196097 None:intergenic
GGTGAAGAGGTTGAAATACT+AGG 0.517005 3_2:-64198518 Msa0417080:CDS
TTACTTTGGGAGAAGGAGAC+CGG 0.518654 3_2:-64197617 Msa0417080:CDS
GATGACCTCACTTTCACATC+AGG 0.518874 3_2:+64201140 None:intergenic
ATTGTTGTTGATGGAAATGA+TGG 0.520449 3_2:+64199973 None:intergenic
CTTGAAACTAATGAAGAACT+AGG 0.522261 3_2:-64198800 Msa0417080:CDS
GGAGACCGGACAGTTGCTGC+AGG 0.524551 3_2:-64197603 Msa0417080:CDS
TGTCTCGCTTGTATATGATC+TGG 0.525618 3_2:+64196173 None:intergenic
GAACAAGGTACTATCAAAGT+TGG 0.530652 3_2:-64198539 Msa0417080:CDS
TCATAGGTTATCGCCAAGCC+TGG 0.538764 3_2:-64198077 Msa0417080:intron
GTCGATTTCATCAAAAGCAA+TGG 0.541309 3_2:+64198991 None:intergenic
CCAGTTACAGTAGTCTTCAA+AGG 0.542427 3_2:+64198400 None:intergenic
TTATTACGTCGGTGTGAAAG+TGG 0.545144 3_2:+64199916 None:intergenic
AAGGATAATTTCCACCCGTA+AGG 0.548635 3_2:+64196368 None:intergenic
TACTATCAAAGTTGGTGAAG+AGG 0.550506 3_2:-64198531 Msa0417080:CDS
CGTCGGTGTGAAAGTGGCCA+TGG 0.560957 3_2:+64199922 None:intergenic
TGAACTTGAAATTGTGCTGA+AGG 0.561200 3_2:+64196319 None:intergenic
TGGATTGATTGTTAAGGAGA+CGG 0.561564 3_2:-64196059 Msa0417080:CDS
ACGAGATATGAAATGGAAAG+AGG 0.562486 3_2:+64200006 None:intergenic
CCTGTATAGGCTAACCAAGA+AGG 0.562555 3_2:+64196349 None:intergenic
TGGTTAGCCTATACAGGTGA+AGG 0.568222 3_2:-64196343 Msa0417080:CDS
AGCACAATTTCAAGTTCATG+AGG 0.570054 3_2:-64196314 Msa0417080:CDS
ACTATTGGTCATGTGGATCA+TGG 0.571616 3_2:-64199163 Msa0417080:CDS
CAATAGTGCCAACATTGACA+TGG 0.572350 3_2:+64199179 None:intergenic
AGAAAGCCCCATGTCAATGT+TGG 0.575301 3_2:-64199187 Msa0417080:CDS
GGGCGTGGAACTGTTGCCAC+TGG 0.576517 3_2:-64198569 Msa0417080:CDS
TAATGATCAAGACACCAGTA+AGG 0.577043 3_2:+64196215 None:intergenic
TAAGCATGGTGATGTGCAGA+GGG 0.577434 3_2:-64198208 Msa0417080:CDS
TGTTTATGCTTGAACCAACA+TGG 0.578179 3_2:-64201041 Msa0417080:CDS
ATTACCTGATGATGTCAAGA+TGG 0.579029 3_2:-64197961 Msa0417080:CDS
TCTCAGACCTAGCGACGAAG+TGG 0.580782 3_2:-64196104 Msa0417080:CDS
CCAAATCAACATTCTAGGAA+AGG 0.581945 3_2:+64197565 None:intergenic
GATATTGATTATCAAATGAA+GGG 0.584081 3_2:-64196292 Msa0417080:CDS
AGTGATTTGTTCCTTACGGG+TGG 0.585686 3_2:-64196379 Msa0417080:CDS
GGAACTGTTTAAGAAACTTG+TGG 0.588961 3_2:-64198374 Msa0417080:CDS
GGCCTTGGCATTACCTTCAG+CGG 0.589058 3_2:+64199012 None:intergenic
AGTTGAATCATCAACTAACA+TGG 0.589483 3_2:-64195975 Msa0417080:CDS
CGAGATATGAAATGGAAAGA+GGG 0.589604 3_2:+64200007 None:intergenic
ATGATTTGTACATATAGGAA+TGG 0.593296 3_2:+64195871 None:intergenic
TGTTTCTCTCCAGAGAACCA+TGG 0.595272 3_2:-64199939 Msa0417080:CDS
GTTAGGCTTCCAATTGTGAG+AGG 0.603182 3_2:-64198836 Msa0417080:CDS
AATAGTGCCAACATTGACAT+GGG 0.618759 3_2:+64199180 None:intergenic
TGGTGATGTGCAGAGGGGAA+TGG 0.620920 3_2:-64198202 Msa0417080:intron
TTAAGCATGGTGATGTGCAG+AGG 0.621669 3_2:-64198209 Msa0417080:CDS
ATATGGCCAGTCAATTACAA+TGG 0.624707 3_2:-64196023 Msa0417080:CDS
GACGGCAGACATTACCGGAA+AGG 0.627700 3_2:-64197988 Msa0417080:CDS
TGAAATCGACAAGGCTCCTG+AGG 0.628396 3_2:-64198978 Msa0417080:CDS
GAAGACTACTGTAACTGGTG+TGG 0.628650 3_2:-64198395 Msa0417080:CDS
TGTTGGCACTATTGGTCATG+TGG 0.632575 3_2:-64199170 Msa0417080:CDS
ACATCACCATGCTTAAGACC+TGG 0.636127 3_2:+64198216 None:intergenic
ACTAACTGCTGCAACTACAA+AGG 0.636345 3_2:-64199131 Msa0417080:intron
TCGCTTGTATATGATCTGGA+TGG 0.636837 3_2:+64196177 None:intergenic
GATGTCAAGATGGTTATGCC+TGG 0.641755 3_2:-64197951 Msa0417080:CDS
ATTGCAGTCACATTATCACC+AGG 0.646485 3_2:+64197933 None:intergenic
AGCCGCTGAAGGTAATGCCA+AGG 0.647109 3_2:-64199014 Msa0417080:CDS
GCTCCTGAGGAAAAGGAGAG+AGG 0.653886 3_2:-64198965 Msa0417080:CDS
GAACAGGTACTAGCCGCTGA+AGG 0.656802 3_2:-64199025 Msa0417080:intron
TGAAATACTAGGACTGACAC+AGG 0.658653 3_2:-64198507 Msa0417080:intron
ACCTTGTTCAACATCACCAG+TGG 0.684138 3_2:+64198553 None:intergenic
TGTCACCTGATGTGAAAGTG+AGG 0.705681 3_2:-64201145 Msa0417080:CDS
GCCACTGGTGATGTTGAACA+AGG 0.711766 3_2:-64198554 Msa0417080:CDS
ATAGTGCCAACATTGACATG+GGG 0.719538 3_2:+64199181 None:intergenic
AAGCATGGTGATGTGCAGAG+GGG 0.748666 3_2:-64198207 Msa0417080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATAATATTAAAAAAT+AGG + chr3_2:64200331-64200350 None:intergenic 0.0%
!! ATAAATAAGATTAAAATCTA+AGG - chr3_2:64200240-64200259 Msa0417080:intron 10.0%
!! TAAATAAGATTAAAATCTAA+GGG - chr3_2:64200241-64200260 Msa0417080:intron 10.0%
!! TTATATAATTAACAAAGTAT+AGG - chr3_2:64200523-64200542 Msa0417080:intron 10.0%
!!! AGATTTGAACAATTTTTTAT+TGG - chr3_2:64195987-64196006 Msa0417080:CDS 15.0%
!! GTAATTTAACGAAATAAATT+AGG + chr3_2:64196872-64196891 None:intergenic 15.0%
!!! GTTTTCGAAATTTTAATTTT+TGG - chr3_2:64197542-64197561 Msa0417080:intron 15.0%
!! ATATAGAAAATATCTTCTAT+TGG + chr3_2:64198292-64198311 None:intergenic 15.0%
!!! TTCATTTTCATAAAATGAAA+TGG + chr3_2:64198858-64198877 None:intergenic 15.0%
!! TACAATAGATGAAAAACAAT+TGG + chr3_2:64196156-64196175 None:intergenic 20.0%
!! AGAAATAAAAACAATTCAGA+GGG + chr3_2:64196348-64196367 None:intergenic 20.0%
!! TTCAATACATTCATATTTGT+AGG - chr3_2:64196612-64196631 Msa0417080:intron 20.0%
!!! CTTATAATCTTTTTGCTTAA+TGG - chr3_2:64198534-64198553 Msa0417080:CDS 20.0%
!!! AATATTATGTGTCCATTTTT+AGG - chr3_2:64198734-64198753 Msa0417080:CDS 20.0%
!!! TCAAAAGAAGGTTTTAAAAA+CGG + chr3_2:64198896-64198915 None:intergenic 20.0%
!! ACAATCATTTAATTATCAAC+AGG - chr3_2:64199351-64199370 Msa0417080:intron 20.0%
!! TAATTTATTAAGTCGCAAAT+AGG - chr3_2:64199479-64199498 Msa0417080:intron 20.0%
!! AATTTATTAAGTCGCAAATA+GGG - chr3_2:64199480-64199499 Msa0417080:intron 20.0%
!! GTAAAACAAACATATTCAAA+TGG + chr3_2:64199570-64199589 None:intergenic 20.0%
!! AGAAATGTGAAAAATGTAAA+GGG + chr3_2:64199841-64199860 None:intergenic 20.0%
!! AAGAAATGTGAAAAATGTAA+AGG + chr3_2:64199842-64199861 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG + chr3_2:64199924-64199943 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - chr3_2:64199965-64199984 Msa0417080:CDS 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - chr3_2:64199966-64199985 Msa0417080:CDS 20.0%
!! TATTAATTAGGGATATGTTT+AGG - chr3_2:64199977-64199996 Msa0417080:CDS 20.0%
!! GGACAAAAATAAAATCAAAT+GGG - chr3_2:64200049-64200068 Msa0417080:intron 20.0%
!!! TTATTGGCTAACATTAATTT+CGG + chr3_2:64200155-64200174 None:intergenic 20.0%
!!! GATATTGATTATCAAATGAA+GGG - chr3_2:64200707-64200726 Msa0417080:intron 20.0%
! AATCCTTGCAAAAAGAATTA+GGG - chr3_2:64195933-64195952 Msa0417080:CDS 25.0%
!!! GAACAATTTTTTATTGGACA+AGG - chr3_2:64195993-64196012 Msa0417080:CDS 25.0%
! GTTGAAAGTTAAAATGCATA+AGG - chr3_2:64196093-64196112 Msa0417080:CDS 25.0%
!! AATGCATAAGGTATTATGTT+AGG - chr3_2:64196105-64196124 Msa0417080:CDS 25.0%
! GAGAAATAAAAACAATTCAG+AGG + chr3_2:64196349-64196368 None:intergenic 25.0%
! TGGAAATATGAGTATTTAAG+TGG - chr3_2:64196588-64196607 Msa0417080:intron 25.0%
!! ATACAATACAAATCTAGAGT+CGG + chr3_2:64196658-64196677 None:intergenic 25.0%
!!! GGGTTTTAATATTATTACGT+CGG + chr3_2:64197097-64197116 None:intergenic 25.0%
! ATCATGCACATTAACAAATT+AGG - chr3_2:64197183-64197202 Msa0417080:intron 25.0%
!! ATATCTAAAGCATAGCATAT+TGG - chr3_2:64197513-64197532 Msa0417080:intron 25.0%
!!! TAATTTTTGGTGACAAGATT+TGG - chr3_2:64197555-64197574 Msa0417080:intron 25.0%
! AAACGAAAACAACAATAGAA+AGG + chr3_2:64197790-64197809 None:intergenic 25.0%
!!! AAGTGAATTGATTGATTTTG+TGG - chr3_2:64197952-64197971 Msa0417080:CDS 25.0%
! GAAAGATATCTTGAAACTAA+TGG - chr3_2:64198225-64198244 Msa0417080:CDS 25.0%
! TCTTCTATTGGCATTAAAAA+AGG + chr3_2:64198280-64198299 None:intergenic 25.0%
!! TTATATGTTTTCAATGTACC+AGG + chr3_2:64198943-64198962 None:intergenic 25.0%
! AACAGGACAAATATTTACTT+TGG - chr3_2:64199368-64199387 Msa0417080:intron 25.0%
! ACAGGACAAATATTTACTTT+GGG - chr3_2:64199369-64199388 Msa0417080:intron 25.0%
! TTTGCGACTTAATAAATTAC+TGG + chr3_2:64199478-64199497 None:intergenic 25.0%
! CATACAAACAAAGGATAATT+TGG + chr3_2:64199915-64199934 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+TGG - chr3_2:64200013-64200032 Msa0417080:CDS 25.0%
!! TGCATCTAGTAATTTGAAAT+GGG - chr3_2:64200014-64200033 Msa0417080:CDS 25.0%
! GGGACAAAAATAAAATCAAA+TGG - chr3_2:64200048-64200067 Msa0417080:intron 25.0%
!! TATTGGCTAACATTAATTTC+GGG + chr3_2:64200154-64200173 None:intergenic 25.0%
! AAAATGCTAGATATCAAGAA+TGG + chr3_2:64200308-64200327 None:intergenic 25.0%
! ATAATTTATACATCGCATTG+CGG - chr3_2:64200347-64200366 Msa0417080:intron 25.0%
! ATTCTTGTATCATAAGCATA+TGG + chr3_2:64200583-64200602 None:intergenic 25.0%
! GAACAAATCACTATAATTGT+AGG + chr3_2:64200612-64200631 None:intergenic 25.0%
!!! TTATAGTGATTTGTTCCTTA+CGG - chr3_2:64200616-64200635 Msa0417080:intron 25.0%
!! GGATATTGATTATCAAATGA+AGG - chr3_2:64200706-64200725 Msa0417080:intron 25.0%
!! TTCATCATCTTCTAAAAACA+TGG - chr3_2:64200751-64200770 Msa0417080:intron 25.0%
!! TCATCATCTTCTAAAAACAT+GGG - chr3_2:64200752-64200771 Msa0417080:intron 25.0%
! ATATCTGGATGTATATTTGA+TGG + chr3_2:64201058-64201077 None:intergenic 25.0%
!! ATGATTTGTACATATAGGAA+TGG + chr3_2:64201131-64201150 None:intergenic 25.0%
!! CTAACATGATTTGTACATAT+AGG + chr3_2:64201136-64201155 None:intergenic 25.0%
! CTATATGTACAAATCATGTT+AGG - chr3_2:64201134-64201153 Msa0417080:CDS 25.0%
! GATTGTACACATCCTTTTAT+TGG + chr3_2:64195917-64195936 None:intergenic 30.0%
CAATCCTTGCAAAAAGAATT+AGG - chr3_2:64195932-64195951 Msa0417080:CDS 30.0%
TCAAATCTTTATCTCCATGT+TGG + chr3_2:64195975-64195994 None:intergenic 30.0%
! CAGTTTTCTTTCGTTTGTTT+TGG - chr3_2:64196406-64196425 Msa0417080:CDS 30.0%
! ATTGTTGTTGATGGAAATGA+TGG + chr3_2:64197029-64197048 None:intergenic 30.0%
GGTAACAAGAAATGAAGTAA+GGG + chr3_2:64197117-64197136 None:intergenic 30.0%
AGGTAACAAGAAATGAAGTA+AGG + chr3_2:64197118-64197137 None:intergenic 30.0%
!!! TGACACATGGTTTTAAATTG+CGG - chr3_2:64197278-64197297 Msa0417080:intron 30.0%
AAACTAAGACTCTTAAGTAG+TGG + chr3_2:64197421-64197440 None:intergenic 30.0%
ACTACTTAAGAGTCTTAGTT+TGG - chr3_2:64197420-64197439 Msa0417080:intron 30.0%
CATTTCCCAATCAGTATTTA+CGG + chr3_2:64197447-64197466 None:intergenic 30.0%
AAATGCTTGAAATACACACT+TGG - chr3_2:64197462-64197481 Msa0417080:intron 30.0%
AATGCTTGAAATACACACTT+GGG - chr3_2:64197463-64197482 Msa0417080:intron 30.0%
AAAGCATAGCATATTGGAAT+TGG - chr3_2:64197519-64197538 Msa0417080:intron 30.0%
AAGCATAGCATATTGGAATT+GGG - chr3_2:64197520-64197539 Msa0417080:intron 30.0%
!! ATTGATTGATTTTGTGGAAC+AGG - chr3_2:64197958-64197977 Msa0417080:CDS 30.0%
AGAGAGGAATTACTATTGAT+AGG - chr3_2:64198050-64198069 Msa0417080:CDS 30.0%
GAGAGGAATTACTATTGATA+GGG - chr3_2:64198051-64198070 Msa0417080:CDS 30.0%
CTTGAAACTAATGAAGAACT+AGG - chr3_2:64198199-64198218 Msa0417080:intron 30.0%
TATTGGCATTAAAAAAGGTC+TGG + chr3_2:64198275-64198294 None:intergenic 30.0%
TTTAAGAAACTTGTGGATAG+AGG - chr3_2:64198632-64198651 Msa0417080:intron 30.0%
AAAAACGGAGAAGGAAAAAT+TGG + chr3_2:64198881-64198900 None:intergenic 30.0%
! CTATGATTTTCGTCAAAAGA+AGG + chr3_2:64198908-64198927 None:intergenic 30.0%
! CTTCTTTTGACGAAAATCAT+AGG - chr3_2:64198906-64198925 Msa0417080:intron 30.0%
ATGGTAAGCATTATCTATGA+TGG - chr3_2:64199121-64199140 Msa0417080:intron 30.0%
TTGATGTCGTATAAGAAAGT+TGG - chr3_2:64199224-64199243 Msa0417080:intron 30.0%
! CAAATATTTACTTTGGGAGA+AGG - chr3_2:64199375-64199394 Msa0417080:intron 30.0%
! ATTTTTGACACTTGATGTGT+TGG - chr3_2:64199542-64199561 Msa0417080:intron 30.0%
!!! ATGTTTGTTTTACCTGTATG+AGG - chr3_2:64199577-64199596 Msa0417080:intron 30.0%
! GCATCTAGTAATTTGAAATG+GGG - chr3_2:64200015-64200034 Msa0417080:intron 30.0%
TTGAAATGGGGTTTACATTT+AGG - chr3_2:64200027-64200046 Msa0417080:intron 30.0%
TGAAATGGGGTTTACATTTA+GGG - chr3_2:64200028-64200047 Msa0417080:intron 30.0%
! GCAATGCTATTTATCAAGAA+AGG - chr3_2:64200111-64200130 Msa0417080:intron 30.0%
ACTATACAAACATAACATGC+TGG + chr3_2:64200402-64200421 None:intergenic 30.0%
!! TTGTATAGTAACTTGTTGCA+TGG - chr3_2:64200413-64200432 Msa0417080:intron 30.0%
TCTATTCTGCTCTTCTTATA+TGG - chr3_2:64200448-64200467 Msa0417080:intron 30.0%
!! TATAGTGATTTGTTCCTTAC+GGG - chr3_2:64200617-64200636 Msa0417080:intron 30.0%
TGTCCTTTAATGATGAAGAT+TGG - chr3_2:64200855-64200874 Msa0417080:intron 30.0%
CTTCCAATCTTCATCATTAA+AGG + chr3_2:64200861-64200880 None:intergenic 30.0%
CAATTTCCATTGTAATTGAC+TGG + chr3_2:64200985-64201004 None:intergenic 30.0%
AGTTGAATCATCAACTAACA+TGG - chr3_2:64201024-64201043 Msa0417080:CDS 30.0%
ATCATCAACTAACATGGAAT+TGG - chr3_2:64201030-64201049 Msa0417080:CDS 30.0%
GCACATGCATATATAATATC+TGG + chr3_2:64201073-64201092 None:intergenic 30.0%
GTCATCACCTATCATTCAAA+TGG - chr3_2:64195876-64195895 Msa0417080:CDS 35.0%
! CTTTTATTGGACTTTGGTGA+TGG + chr3_2:64195904-64195923 None:intergenic 35.0%
CATCACCAAAGTCCAATAAA+AGG - chr3_2:64195902-64195921 Msa0417080:CDS 35.0%
! CACATCCTTTTATTGGACTT+TGG + chr3_2:64195910-64195929 None:intergenic 35.0%
! ATGCCCTAATTCTTTTTGCA+AGG + chr3_2:64195939-64195958 None:intergenic 35.0%
TGTTTATGCTTGAACCAACA+TGG - chr3_2:64195958-64195977 Msa0417080:CDS 35.0%
GTTTCCAAATTAGAAAGACG+TGG - chr3_2:64196069-64196088 Msa0417080:CDS 35.0%
AACTCCACGTCTTTCTAATT+TGG + chr3_2:64196076-64196095 None:intergenic 35.0%
ATGCACAAACATAAGCAATC+TGG - chr3_2:64196182-64196201 Msa0417080:CDS 35.0%
AACATAAGCAATCTGGCATA+TGG - chr3_2:64196189-64196208 Msa0417080:CDS 35.0%
ATTCTCTTGATCTACCAAAG+AGG - chr3_2:64196290-64196309 Msa0417080:CDS 35.0%
TACCAAAGAGGAGTGATTTA+GGG - chr3_2:64196302-64196321 Msa0417080:CDS 35.0%
! ACAATTCAGAGGGTGATTTT+GGG + chr3_2:64196338-64196357 None:intergenic 35.0%
! AACAATTCAGAGGGTGATTT+TGG + chr3_2:64196339-64196358 None:intergenic 35.0%
! TTTGATTTCTCGTCTTTGTG+CGG - chr3_2:64196460-64196479 Msa0417080:intron 35.0%
CGAGATATGAAATGGAAAGA+GGG + chr3_2:64196995-64197014 None:intergenic 35.0%
ACGAGATATGAAATGGAAAG+AGG + chr3_2:64196996-64197015 None:intergenic 35.0%
AAGTTGCACGAGATATGAAA+TGG + chr3_2:64197003-64197022 None:intergenic 35.0%
! AGAAGATGCATTGTTGTTGA+TGG + chr3_2:64197038-64197057 None:intergenic 35.0%
TTTGGTCCGTAAATACTGAT+TGG - chr3_2:64197438-64197457 Msa0417080:intron 35.0%
! TTGGTCCGTAAATACTGATT+GGG - chr3_2:64197439-64197458 Msa0417080:intron 35.0%
TGAACCACATCAGATGATTT+CGG + chr3_2:64197589-64197608 None:intergenic 35.0%
ACCACATCATCAATATATGC+TGG - chr3_2:64197679-64197698 Msa0417080:intron 35.0%
!!! CGAACCATGGTTTTAAATTG+CGG + chr3_2:64197705-64197724 None:intergenic 35.0%
AAAATACATGTGTCGAACCA+TGG + chr3_2:64197718-64197737 None:intergenic 35.0%
! TCGACACATGTATTTTGTGT+CGG - chr3_2:64197722-64197741 Msa0417080:intron 35.0%
AATAGTGCCAACATTGACAT+GGG + chr3_2:64197822-64197841 None:intergenic 35.0%
GGCATTAAATTTGTGTGACT+CGG - chr3_2:64197895-64197914 Msa0417080:intron 35.0%
!! AAATTTGTGTGACTCGGTTT+AGG - chr3_2:64197901-64197920 Msa0417080:intron 35.0%
! GTCGATTTCATCAAAAGCAA+TGG + chr3_2:64198011-64198030 None:intergenic 35.0%
! TGCTTTTGATGAAATCGACA+AGG - chr3_2:64198012-64198031 Msa0417080:CDS 35.0%
ACTATTGATAGGGTAAGACT+TGG - chr3_2:64198061-64198080 Msa0417080:CDS 35.0%
TTCCACTATCTTCGGTTTAT+GGG - chr3_2:64198404-64198423 Msa0417080:CDS 35.0%
! GAACAAGGTACTATCAAAGT+TGG - chr3_2:64198460-64198479 Msa0417080:intron 35.0%
!! TACTATCAAAGTTGGTGAAG+AGG - chr3_2:64198468-64198487 Msa0417080:intron 35.0%
GGAACTGTTTAAGAAACTTG+TGG - chr3_2:64198625-64198644 Msa0417080:intron 35.0%
!!! CTCTTTTTTTCCTCGCAATT+TGG - chr3_2:64198696-64198715 Msa0417080:intron 35.0%
!! TTATGTGTCCATTTTTAGGC+TGG - chr3_2:64198738-64198757 Msa0417080:CDS 35.0%
CTTTATCACCAGCCTAAAAA+TGG + chr3_2:64198749-64198768 None:intergenic 35.0%
! TTTTAGGCTGGTGATAAAGT+AGG - chr3_2:64198750-64198769 Msa0417080:CDS 35.0%
! AAAGTAGGACTTCTTTTACC+AGG - chr3_2:64198765-64198784 Msa0417080:CDS 35.0%
!!! GAAGGTTTTAAAAACGGAGA+AGG + chr3_2:64198890-64198909 None:intergenic 35.0%
! TCGACTCTAAATTTTACCTG+AGG - chr3_2:64198989-64199008 Msa0417080:CDS 35.0%
! CTCTAAATTTTACCTGAGGA+CGG - chr3_2:64198993-64199012 Msa0417080:CDS 35.0%
ATCAGGTAATTGTACCTTTC+CGG + chr3_2:64199028-64199047 None:intergenic 35.0%
! ATTACCTGATGATGTCAAGA+TGG - chr3_2:64199038-64199057 Msa0417080:intron 35.0%
ATAACCATCTTGACATCATC+AGG + chr3_2:64199045-64199064 None:intergenic 35.0%
TTACCTTATCCTCTTGAACA+TGG - chr3_2:64199102-64199121 Msa0417080:intron 35.0%
TTACCATGTTCAAGAGGATA+AGG + chr3_2:64199108-64199127 None:intergenic 35.0%
TAATGCTTACCATGTTCAAG+AGG + chr3_2:64199114-64199133 None:intergenic 35.0%
! AACATTCTAGGAAAGGACTT+TGG + chr3_2:64199430-64199449 None:intergenic 35.0%
! CCAAATCAACATTCTAGGAA+AGG + chr3_2:64199437-64199456 None:intergenic 35.0%
! CCTTTCCTAGAATGTTGATT+TGG - chr3_2:64199434-64199453 Msa0417080:intron 35.0%
ATTACTGGACAGAAACTTTG+TGG + chr3_2:64199463-64199482 None:intergenic 35.0%
!! AAGGGTGTTACATATAGAGA+CGG + chr3_2:64199823-64199842 None:intergenic 35.0%
TCAAATGGGTGCTTAGATAT+AGG - chr3_2:64200063-64200082 Msa0417080:intron 35.0%
TAGCCAATAAAATCTCAGTC+TGG - chr3_2:64200165-64200184 Msa0417080:intron 35.0%
TGAACTTGAAATTGTGCTGA+AGG + chr3_2:64200683-64200702 None:intergenic 35.0%
!! AGCACAATTTCAAGTTCATG+AGG - chr3_2:64200685-64200704 Msa0417080:intron 35.0%
TAATGATCAAGACACCAGTA+AGG + chr3_2:64200787-64200806 None:intergenic 35.0%
! ATCTTTGTAGCTTTTGAGCA+TGG - chr3_2:64200920-64200939 Msa0417080:intron 35.0%
! TGAGCATGGATTGATTGTTA+AGG - chr3_2:64200934-64200953 Msa0417080:intron 35.0%
TGGATTGATTGTTAAGGAGA+CGG - chr3_2:64200940-64200959 Msa0417080:intron 35.0%
ATATGGCCAGTCAATTACAA+TGG - chr3_2:64200976-64200995 Msa0417080:intron 35.0%
GATGGCTCCATTTGAATGAT+AGG + chr3_2:64195886-64195905 None:intergenic 40.0%
AGAAAAGTCACAGGCTGAAA+TGG + chr3_2:64196045-64196064 None:intergenic 40.0%
CTACCAAAGAGGAGTGATTT+AGG - chr3_2:64196301-64196320 Msa0417080:CDS 40.0%
!! TTGCGTCAACGTTTTAGATC+TGG - chr3_2:64196568-64196587 Msa0417080:intron 40.0%
AAAGAGAAGGAATGAGCTAG+CGG + chr3_2:64196928-64196947 None:intergenic 40.0%
ATTGGAACCTTGGAAAGAGA+AGG + chr3_2:64196941-64196960 None:intergenic 40.0%
TTCCAAGGTTCCAATTCCAA+TGG - chr3_2:64196946-64196965 Msa0417080:intron 40.0%
AAGAAAGCAAGAGAAGCCAT+TGG + chr3_2:64196965-64196984 None:intergenic 40.0%
TTATTACGTCGGTGTGAAAG+TGG + chr3_2:64197086-64197105 None:intergenic 40.0%
GTTACCTACGTTACTTGTCA+TGG - chr3_2:64197131-64197150 Msa0417080:intron 40.0%
CATGCTTAGTGTTTGACACA+TGG - chr3_2:64197265-64197284 Msa0417080:intron 40.0%
!!! ATGGTTTTAAATTGCGGTCG+CGG - chr3_2:64197284-64197303 Msa0417080:intron 40.0%
ATCACAGTAGCCATAATGAC+TGG + chr3_2:64197312-64197331 None:intergenic 40.0%
TGAAATACACACTTGGGAGA+CGG - chr3_2:64197469-64197488 Msa0417080:intron 40.0%
! TGGTGACAAGATTTGGAACA+TGG - chr3_2:64197562-64197581 Msa0417080:intron 40.0%
! GGTGACAAGATTTGGAACAT+GGG - chr3_2:64197563-64197582 Msa0417080:intron 40.0%
GTGATCTTCAACCATGTGTA+CGG + chr3_2:64197631-64197650 None:intergenic 40.0%
!! GCCAGCATATATTGATGATG+TGG + chr3_2:64197683-64197702 None:intergenic 40.0%
!! TGTATTTTGTGTCGGTGCAT+AGG - chr3_2:64197730-64197749 Msa0417080:intron 40.0%
!! GTATTTTGTGTCGGTGCATA+GGG - chr3_2:64197731-64197750 Msa0417080:intron 40.0%
ATAGTGCCAACATTGACATG+GGG + chr3_2:64197821-64197840 None:intergenic 40.0%
CAATAGTGCCAACATTGACA+TGG + chr3_2:64197823-64197842 None:intergenic 40.0%
CATGTCAATGTTGGCACTAT+TGG - chr3_2:64197821-64197840 Msa0417080:intron 40.0%
ACTATTGGTCATGTGGATCA+TGG - chr3_2:64197836-64197855 Msa0417080:intron 40.0%
ACTAACTGCTGCAACTACAA+AGG - chr3_2:64197868-64197887 Msa0417080:intron 40.0%
! TGCTGCAACTACAAAGGTTT+TGG - chr3_2:64197874-64197893 Msa0417080:intron 40.0%
TTCATCAAAAGCAATGGCCT+TGG + chr3_2:64198005-64198024 None:intergenic 40.0%
ATGAGACTGCAAGAACAATC+AGG + chr3_2:64198143-64198162 None:intergenic 40.0%
TGTTCTTGCAGTCTCATGTT+AGG - chr3_2:64198146-64198165 Msa0417080:intron 40.0%
GAAGTTGACAACATATGTGG+AGG + chr3_2:64198374-64198393 None:intergenic 40.0%
CAGGAAGTTGACAACATATG+TGG + chr3_2:64198377-64198396 None:intergenic 40.0%
!! AAGATAGTGGAAGGAACATC+AGG + chr3_2:64198396-64198415 None:intergenic 40.0%
GATGTTCCTTCCACTATCTT+CGG - chr3_2:64198396-64198415 Msa0417080:CDS 40.0%
!! CATAAACCGAAGATAGTGGA+AGG + chr3_2:64198405-64198424 None:intergenic 40.0%
CTTCCACTATCTTCGGTTTA+TGG - chr3_2:64198403-64198422 Msa0417080:CDS 40.0%
TTCCCATAAACCGAAGATAG+TGG + chr3_2:64198409-64198428 None:intergenic 40.0%
ACTATCTTCGGTTTATGGGA+AGG - chr3_2:64198408-64198427 Msa0417080:CDS 40.0%
CTATCTTCGGTTTATGGGAA+GGG - chr3_2:64198409-64198428 Msa0417080:CDS 40.0%
TATCTTCGGTTTATGGGAAG+GGG - chr3_2:64198410-64198429 Msa0417080:intron 40.0%
GGTGAAGAGGTTGAAATACT+AGG - chr3_2:64198481-64198500 Msa0417080:intron 40.0%
TGAAATACTAGGACTGACAC+AGG - chr3_2:64198492-64198511 Msa0417080:intron 40.0%
TTTATCAGTCTTCTGTGTGC+AGG - chr3_2:64198571-64198590 Msa0417080:CDS 40.0%
TTATCAGTCTTCTGTGTGCA+GGG - chr3_2:64198572-64198591 Msa0417080:CDS 40.0%
CCAGTTACAGTAGTCTTCAA+AGG + chr3_2:64198602-64198621 None:intergenic 40.0%
! CCTTTGAAGACTACTGTAAC+TGG - chr3_2:64198599-64198618 Msa0417080:intron 40.0%
TGCGAGGAAAAAAAGAGTAG+AGG + chr3_2:64198693-64198712 None:intergenic 40.0%
! CTTTTACCAGGTCTTAAGCA+TGG - chr3_2:64198777-64198796 Msa0417080:CDS 40.0%
! TGTTTTCAATGTACCAGGCT+TGG + chr3_2:64198938-64198957 None:intergenic 40.0%
ATTGCAGTCACATTATCACC+AGG + chr3_2:64199069-64199088 None:intergenic 40.0%
GGACTCCAAATCAACATTCT+AGG + chr3_2:64199442-64199461 None:intergenic 40.0%
!! GAAACACTGATTCCTCATAC+AGG + chr3_2:64199592-64199611 None:intergenic 40.0%
GTGTTACATATAGAGACGGA+GGG + chr3_2:64199819-64199838 None:intergenic 40.0%
TGGGTGCTTAGATATAGGAA+CGG - chr3_2:64200068-64200087 Msa0417080:intron 40.0%
TGCTTAGATATAGGAACGGA+GGG - chr3_2:64200072-64200091 Msa0417080:intron 40.0%
CAATAAAATCTCAGTCTGGC+CGG - chr3_2:64200169-64200188 Msa0417080:intron 40.0%
AAGGATAATTTCCACCCGTA+AGG + chr3_2:64200634-64200653 None:intergenic 40.0%
TCGCTTGTATATGATCTGGA+TGG + chr3_2:64200825-64200844 None:intergenic 40.0%
TGTCTCGCTTGTATATGATC+TGG + chr3_2:64200829-64200848 None:intergenic 40.0%
ACGGCTGTTTATCTGGTATA+TGG - chr3_2:64200959-64200978 Msa0417080:intron 40.0%
TGTCACCTGATGTGAAAGTG+AGG - chr3_2:64195854-64195873 Msa0417080:CDS 45.0%
GATGACCTCACTTTCACATC+AGG + chr3_2:64195862-64195881 None:intergenic 45.0%
GAAACACGCAGAAAAGTCAC+AGG + chr3_2:64196054-64196073 None:intergenic 45.0%
GACCCTAAATCACTCCTCTT+TGG + chr3_2:64196307-64196326 None:intergenic 45.0%
! TCTAGAGTCGGTAAAGACAG+CGG + chr3_2:64196646-64196665 None:intergenic 45.0%
GCTCATTCCTTCTCTTTCCA+AGG - chr3_2:64196931-64196950 Msa0417080:intron 45.0%
AGCCATTGGAATTGGAACCT+TGG + chr3_2:64196951-64196970 None:intergenic 45.0%
GCAAGAGAAGCCATTGGAAT+TGG + chr3_2:64196959-64196978 None:intergenic 45.0%
TGTTTCTCTCCAGAGAACCA+TGG - chr3_2:64197060-64197079 Msa0417080:intron 45.0%
GCATCCATGACAAGTAACGT+AGG + chr3_2:64197138-64197157 None:intergenic 45.0%
TGAAGATCACACCGCAATTG+TGG - chr3_2:64197641-64197660 Msa0417080:intron 45.0%
! CTGGCCGCAATTTAAAACCA+TGG - chr3_2:64197698-64197717 Msa0417080:intron 45.0%
AGAAAGCCCCATGTCAATGT+TGG - chr3_2:64197812-64197831 Msa0417080:intron 45.0%
TGTTGGCACTATTGGTCATG+TGG - chr3_2:64197829-64197848 Msa0417080:intron 45.0%
! ATTCCTCTCTCCTTTTCCTC+AGG + chr3_2:64198040-64198059 None:intergenic 45.0%
GTTAGGCTTCCAATTGTGAG+AGG - chr3_2:64198163-64198182 Msa0417080:intron 45.0%
CTTCCAATTGTGAGAGGTTC+AGG - chr3_2:64198169-64198188 Msa0417080:intron 45.0%
AGACCTGAACCTCTCACAAT+TGG + chr3_2:64198175-64198194 None:intergenic 45.0%
ACCTTGTTCAACATCACCAG+TGG + chr3_2:64198449-64198468 None:intergenic 45.0%
GAAGACTACTGTAACTGGTG+TGG - chr3_2:64198604-64198623 Msa0417080:intron 45.0%
! TTCCTCGCAATTTGGACTAG+TGG - chr3_2:64198704-64198723 Msa0417080:intron 45.0%
ATCCACTAGTCCAAATTGCG+AGG + chr3_2:64198709-64198728 None:intergenic 45.0%
ACATCACCATGCTTAAGACC+TGG + chr3_2:64198786-64198805 None:intergenic 45.0%
! TTAAGCATGGTGATGTGCAG+AGG - chr3_2:64198790-64198809 Msa0417080:CDS 45.0%
! TAAGCATGGTGATGTGCAGA+GGG - chr3_2:64198791-64198810 Msa0417080:CDS 45.0%
GATGTCAAGATGGTTATGCC+TGG - chr3_2:64199048-64199067 Msa0417080:intron 45.0%
! GTGGTCACACACAAAAGTGT+TGG + chr3_2:64199310-64199329 None:intergenic 45.0%
! TTACTTTGGGAGAAGGAGAC+CGG - chr3_2:64199382-64199401 Msa0417080:intron 45.0%
ATTGAAACCAGCATGCAGAG+AGG - chr3_2:64199503-64199522 Msa0417080:intron 45.0%
ATAGATTCCTCTCTGCATGC+TGG + chr3_2:64199513-64199532 None:intergenic 45.0%
! GGTGTTACATATAGAGACGG+AGG + chr3_2:64199820-64199839 None:intergenic 45.0%
GTGCTTAGATATAGGAACGG+AGG - chr3_2:64200071-64200090 Msa0417080:intron 45.0%
! CGGCCAGACTGAGATTTTAT+TGG + chr3_2:64200171-64200190 None:intergenic 45.0%
!! AGTGATTTGTTCCTTACGGG+TGG - chr3_2:64200620-64200639 Msa0417080:intron 45.0%
CGGGTGGAAATTATCCTTCT+TGG - chr3_2:64200636-64200655 Msa0417080:intron 45.0%
CCTGTATAGGCTAACCAAGA+AGG + chr3_2:64200653-64200672 None:intergenic 45.0%
!! CCTTCTTGGTTAGCCTATAC+AGG - chr3_2:64200650-64200669 Msa0417080:intron 45.0%
!! TGGTTAGCCTATACAGGTGA+AGG - chr3_2:64200656-64200675 Msa0417080:intron 45.0%
TGAAGGTCCTTCACCTGTAT+AGG + chr3_2:64200666-64200685 None:intergenic 45.0%
ATGGGAGTTGAATGCCTTAC+TGG - chr3_2:64200770-64200789 Msa0417080:intron 45.0%
TAAGGAGACGGCTGTTTATC+TGG - chr3_2:64200952-64200971 Msa0417080:intron 45.0%
TGAAAGTGGCCATGGTTCTC+TGG + chr3_2:64197072-64197091 None:intergenic 50.0%
TGTGCATGATGATCGCATGC+AGG + chr3_2:64197173-64197192 None:intergenic 50.0%
TGGGCCGAAATCATCTGATG+TGG - chr3_2:64197582-64197601 Msa0417080:CDS 50.0%
TAACGATGCAGCCGTACACA+TGG - chr3_2:64197617-64197636 Msa0417080:CDS 50.0%
! TTGTGTCGGTGCATAGGGTA+TGG - chr3_2:64197736-64197755 Msa0417080:intron 50.0%
! TGTGTCGGTGCATAGGGTAT+GGG - chr3_2:64197737-64197756 Msa0417080:intron 50.0%
TGAAATCGACAAGGCTCCTG+AGG - chr3_2:64198021-64198040 Msa0417080:CDS 50.0%
! GCCACTGGTGATGTTGAACA+AGG - chr3_2:64198445-64198464 Msa0417080:intron 50.0%
! AAGCATGGTGATGTGCAGAG+GGG - chr3_2:64198792-64198811 Msa0417080:CDS 50.0%
TCATAGGTTATCGCCAAGCC+TGG - chr3_2:64198922-64198941 Msa0417080:intron 50.0%
TCAGTCTGGCCGGAAATCAT+GGG - chr3_2:64200179-64200198 Msa0417080:intron 50.0%
GTGTGATCTTCAACCACGTG+TGG - chr3_2:64200369-64200388 Msa0417080:intron 50.0%
AAGATCTCCACTTCGTCGCT+AGG + chr3_2:64200905-64200924 None:intergenic 50.0%
GGTCGCGGATCCAGTCATTA+TGG - chr3_2:64197299-64197318 Msa0417080:intron 55.0%
ACCGCAATTGTGGTGCGATG+CGG - chr3_2:64197651-64197670 Msa0417080:intron 55.0%
ACCGCATCGCACCACAATTG+CGG + chr3_2:64197655-64197674 None:intergenic 55.0%
GAACAGGTACTAGCCGCTGA+AGG - chr3_2:64197974-64197993 Msa0417080:CDS 55.0%
AGCCGCTGAAGGTAATGCCA+AGG - chr3_2:64197985-64198004 Msa0417080:CDS 55.0%
GGCCTTGGCATTACCTTCAG+CGG + chr3_2:64197990-64198009 None:intergenic 55.0%
CGACAAGGCTCCTGAGGAAA+AGG - chr3_2:64198027-64198046 Msa0417080:CDS 55.0%
GCTCCTGAGGAAAAGGAGAG+AGG - chr3_2:64198034-64198053 Msa0417080:CDS 55.0%
! TGGTGATGTGCAGAGGGGAA+TGG - chr3_2:64198797-64198816 Msa0417080:CDS 55.0%
CTGAGGACGGCAGACATTAC+CGG - chr3_2:64199006-64199025 Msa0417080:CDS 55.0%
GACGGCAGACATTACCGGAA+AGG - chr3_2:64199011-64199030 Msa0417080:CDS 55.0%
CAACTCCTGCAGCAACTGTC+CGG + chr3_2:64199404-64199423 None:intergenic 55.0%
CTCAGTCTGGCCGGAAATCA+TGG - chr3_2:64200178-64200197 Msa0417080:intron 55.0%
CAGTCTGGCCGGAAATCATG+GGG - chr3_2:64200180-64200199 Msa0417080:intron 55.0%
ACCCACCACCCCATGATTTC+CGG + chr3_2:64200191-64200210 None:intergenic 55.0%
!! TGCTGGTGTTGATCCACACG+TGG + chr3_2:64200385-64200404 None:intergenic 55.0%
TCTCAGACCTAGCGACGAAG+TGG - chr3_2:64200895-64200914 Msa0417080:intron 55.0%
CGTCGGTGTGAAAGTGGCCA+TGG + chr3_2:64197080-64197099 None:intergenic 60.0%
GCAATTGTGGTGCGATGCGG+TGG - chr3_2:64197654-64197673 Msa0417080:intron 60.0%
GGTCTGGCAAGCTGTCGAAC+AGG + chr3_2:64198259-64198278 None:intergenic 60.0%
TCGGTTTATGGGAAGGGGCG+TGG - chr3_2:64198415-64198434 Msa0417080:intron 60.0%
CGGTAATGTCTGCCGTCCTC+AGG + chr3_2:64199008-64199027 None:intergenic 60.0%
TCTGGCCGGAAATCATGGGG+TGG - chr3_2:64200183-64200202 Msa0417080:intron 60.0%
GCCGGAAATCATGGGGTGGT+GGG - chr3_2:64200187-64200206 Msa0417080:intron 60.0%
GGGCGTGGAACTGTTGCCAC+TGG - chr3_2:64198430-64198449 Msa0417080:intron 65.0%
GGAGACCGGACAGTTGCTGC+AGG - chr3_2:64199396-64199415 Msa0417080:intron 65.0%
GGCCGGAAATCATGGGGTGG+TGG - chr3_2:64200186-64200205 Msa0417080:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64195847 64201174 64195847 ID=Msa0417080;Name=Msa0417080
chr3_2 mRNA 64195847 64201174 64195847 ID=Msa0417080-mRNA-1;Parent=Msa0417080;Name=Msa0417080-mRNA-1;_AED=0.33;_eAED=0.35;_QI=0|0.3|0.18|1|0.7|0.63|11|0|547
chr3_2 exon 64201002 64201174 64201002 ID=Msa0417080-mRNA-1:exon:14228;Parent=Msa0417080-mRNA-1
chr3_2 exon 64199923 64200033 64199923 ID=Msa0417080-mRNA-1:exon:14227;Parent=Msa0417080-mRNA-1
chr3_2 exon 64199132 64199207 64199132 ID=Msa0417080-mRNA-1:exon:14226;Parent=Msa0417080-mRNA-1
chr3_2 exon 64198949 64199041 64198949 ID=Msa0417080-mRNA-1:exon:14225;Parent=Msa0417080-mRNA-1
chr3_2 exon 64198706 64198864 64198706 ID=Msa0417080-mRNA-1:exon:14224;Parent=Msa0417080-mRNA-1
chr3_2 exon 64198508 64198591 64198508 ID=Msa0417080-mRNA-1:exon:14223;Parent=Msa0417080-mRNA-1
chr3_2 exon 64198363 64198428 64198363 ID=Msa0417080-mRNA-1:exon:14222;Parent=Msa0417080-mRNA-1
chr3_2 exon 64198203 64198265 64198203 ID=Msa0417080-mRNA-1:exon:14221;Parent=Msa0417080-mRNA-1
chr3_2 exon 64197944 64198093 64197944 ID=Msa0417080-mRNA-1:exon:14220;Parent=Msa0417080-mRNA-1
chr3_2 exon 64197575 64197648 64197575 ID=Msa0417080-mRNA-1:exon:14219;Parent=Msa0417080-mRNA-1
chr3_2 exon 64195847 64196441 64195847 ID=Msa0417080-mRNA-1:exon:14218;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64201002 64201174 64201002 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64199923 64200033 64199923 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64199132 64199207 64199132 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64198949 64199041 64198949 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64198706 64198864 64198706 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64198508 64198591 64198508 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64198363 64198428 64198363 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64198203 64198265 64198203 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64197944 64198093 64197944 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64197575 64197648 64197575 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
chr3_2 CDS 64195847 64196441 64195847 ID=Msa0417080-mRNA-1:cds;Parent=Msa0417080-mRNA-1
Gene Sequence

>Msa0417080

ATGGATCTGTCACCTGATGTGAAAGTGAGGTCATCACCTATCATTCAAATGGAGCCATCACCAAAGTCCAATAAAAGGATGTGTACAATCCTTGCAAAAAGAATTAGGGCATGTTTATGCTTGAACCAACATGGAGATAAAGATTTGAACAATTTTTTATTGGACAAGGTTTTAAAACCCTCTTTCCATTTCATATCTCGTGCAACTTCTTCCATCATTTCCATCAACAACAATGCATCTTCTTTTGTTTCTCTCCAGAGAACCATGGCCACTTTCACACCGACAAAGCCCCATGTCAATGTTGGCACTATTGGTCATGTGGATCATGGAAAAATCACACTAACTGCTGCAACTACAAAGGTACTAGCCGCTGAAGGTAATGCCAAGGCCATTGCTTTTGATGAAATCGACAAGGCTCCTGAGGAAAAGGAGAGAGGAATTACTATTGATAGGTCTCATGTTAGGCTTCCAATTGTGAGAGGTTCAGGTCTGTATCTTGAAACTAATGAAGAACTAGGAGAGAAAGATATCTTGAAACTAATGGTTGCTGATCCTGTTCGACAGCTTGCCAGACCTTTTTTAATGCCAATAGAAGATATTTTCTATATTCAAGGGCGTGGAACTGTTGCCACTGGTGATGTTGAACAAGGTACTATCAAAGTTGGTGAAGAGGTTGAAATACTAGGACTGACACAGGGTGAACCTTTGAAGACTACTGTAACTGGTGTGGAACTGTTTAAGAAACTTGTGGATAGAGGAGAAGCTGGTGATAAAGTAGGACTTCTTTTACCAGGTCTTAAGCATGGTGATGTGCAGAGGGGAATGGTTATCGCCAAGCCTGGTACATTGAAAACATATAAGAAGTTTGAAGCACAAATTTTTTATGTCGACTCTAAATTTTACCTGAGGACGGCAGACATTACCGGAAAGGTACAATTACCTGATGATGTCAAGATGGTTATGCCTGGTGATAATGACAAATATTTACTTTGGGAGAAGGAGACCGGACAGTTGCTGCAGGAGTTGTCTCCAAAGTCCTTTCCTAGAATCCATATGCTTATGATACAAGAATTAACAACCTACAATTATAGTGATTTGTTCCTTACGGGTGGAAATTATCCTTCTTGGTTAGCCTATACAGGTGAAGGACCTTCAGCACAATTTCAAGTTCATGAGGATATTGATTATCAAATGAAGGGAACAATCATATGTATTGTTTATTCATCATCTTCTAAAAACATGGGAGTTGAATGCCTTACTGGTGTCTTGATCATTAATTACACAAAGTGCACCATCCAGATCATATACAAGCGAGACACGATAATGTCCTTTAATGATGAAGATTGGAAGAATGTAACATCAAATCTCAGACCTAGCGACGAAGTGGAGATCTTTGTAGCTTTTGAGCATGGATTGATTGTTAAGGAGACGGCTGTTTATCTGGTATATGGCCAGTCAATTACAATGGAAATTGAACAATCAATTACTATTGAAGTTGAATCATCAACTAACATGGAATTGGAGCCATCAAATATACATCCAGATATTATATATGCATGTGCTTTGATGCAAACTAAATGTAGCTCATCAATTTTCACCATTCCTATATGTACAAATCATGTTAGGTTTAACTTAATCGTGTGA
Protein sequence

>Msa0417080

MDLSPDVKVRSSPIIQMEPSPKSNKRMCTILAKRIRACLCLNQHGDKDLNNFLLDKVLKPSFHFISRATSSIISINNNASSFVSLQRTMATFTPTKPHVNVGTIGHVDHGKITLTAATTKVLAAEGNAKAIAFDEIDKAPEEKERGITIDRSHVRLPIVRGSGLYLETNEELGEKDILKLMVADPVRQLARPFLMPIEDIFYIQGRGTVATGDVEQGTIKVGEEVEILGLTQGEPLKTTVTGVELFKKLVDRGEAGDKVGLLLPGLKHGDVQRGMVIAKPGTLKTYKKFEAQIFYVDSKFYLRTADITGKVQLPDDVKMVMPGDNDKYLLWEKETGQLLQELSPKSFPRIHMLMIQELTTYNYSDLFLTGGNYPSWLAYTGEGPSAQFQVHEDIDYQMKGTIICIVYSSSSKNMGVECLTGVLIINYTKCTIQIIYKRDTIMSFNDEDWKNVTSNLRPSDEVEIFVAFEHGLIVKETAVYLVYGQSITMEIEQSITIEVESSTNMELEPSNIHPDIIYACALMQTKCSSSIFTIPICTNHVRFNLIV*