Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673450 | XP_003605490.2 | 83.908 | 348 | 54 | 1 | 1 | 346 | 1 | 348 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673450 | sp|F4HT21|IAN9_ARATH | 56.119 | 335 | 137 | 2 | 2 | 336 | 6 | 330 | 5.75e-125 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673450 | G7JN50 | 83.908 | 348 | 54 | 1 | 1 | 346 | 1 | 348 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0673450 | 0.801820 | 7.517817e-49 | -8.615850e-47 |
| Msa0012530 | Msa0673450 | 0.813820 | 2.108628e-51 | -8.615850e-47 |
| Msa0017510 | Msa0673450 | 0.819725 | 9.985837e-53 | -8.615850e-47 |
| Msa0018650 | Msa0673450 | 0.804021 | 2.638506e-49 | -8.615850e-47 |
| Msa0062860 | Msa0673450 | 0.815216 | 1.035681e-51 | -8.615850e-47 |
| Msa0071500 | Msa0673450 | 0.805097 | 1.573427e-49 | -8.615850e-47 |
| Msa0078590 | Msa0673450 | 0.826886 | 2.121340e-54 | -8.615850e-47 |
| Msa0096450 | Msa0673450 | 0.800947 | 1.134488e-48 | -8.615850e-47 |
| Msa0105070 | Msa0673450 | 0.803491 | 3.398914e-49 | -8.615850e-47 |
| Msa0107580 | Msa0673450 | 0.826141 | 3.192930e-54 | -8.615850e-47 |
| Msa0114060 | Msa0673450 | 0.802142 | 6.453923e-49 | -8.615850e-47 |
| Msa0636170 | Msa0673450 | 0.802409 | 5.688263e-49 | -8.615850e-47 |
| Msa0650630 | Msa0673450 | 0.802904 | 4.495668e-49 | -8.615850e-47 |
| Msa0657970 | Msa0673450 | 0.834134 | 3.573182e-56 | -8.615850e-47 |
| Msa0661650 | Msa0673450 | 0.817432 | 3.307251e-52 | -8.615850e-47 |
| Msa0661870 | Msa0673450 | 0.841214 | 5.441681e-58 | -8.615850e-47 |
| Msa0672570 | Msa0673450 | 0.834698 | 2.578138e-56 | -8.615850e-47 |
| Msa0673450 | Msa0673460 | 0.841290 | 5.198919e-58 | -8.615850e-47 |
| Msa0673450 | Msa0678930 | 0.808430 | 3.109752e-50 | -8.615850e-47 |
| Msa0673450 | Msa0681250 | 0.804659 | 1.943001e-49 | -8.615850e-47 |
| Msa0673450 | Msa0681270 | 0.821166 | 4.665938e-53 | -8.615850e-47 |
| Msa0673450 | Msa0696640 | 0.812451 | 4.212157e-51 | -8.615850e-47 |
| Msa0673450 | Msa0726140 | 0.816077 | 6.659917e-52 | -8.615850e-47 |
| Msa0673450 | Msa0731940 | 0.801489 | 8.790185e-49 | -8.615850e-47 |
| Msa0673450 | Msa0735170 | 0.805799 | 1.121342e-49 | -8.615850e-47 |
| Msa0673450 | Msa0743720 | 0.804283 | 2.327424e-49 | -8.615850e-47 |
| Msa0673450 | Msa0745060 | 0.815126 | 1.084614e-51 | -8.615850e-47 |
| Msa0673450 | Msa0749290 | 0.811689 | 6.174118e-51 | -8.615850e-47 |
| Msa0673450 | Msa0764960 | 0.825317 | 5.007684e-54 | -8.615850e-47 |
| Msa0673450 | Msa0766630 | 0.815795 | 7.698899e-52 | -8.615850e-47 |
| Msa0673450 | Msa0789250 | 0.833263 | 5.896341e-56 | -8.615850e-47 |
| Msa0673450 | Msa0806090 | 0.800349 | 1.502617e-48 | -8.615850e-47 |
| Msa0673450 | Msa0810220 | 0.804193 | 2.429867e-49 | -8.615850e-47 |
| Msa0673450 | Msa0825860 | 0.809831 | 1.558014e-50 | -8.615850e-47 |
| Msa0673450 | Msa0857810 | 0.817531 | 3.142191e-52 | -8.615850e-47 |
| Msa0673450 | Msa0880140 | 0.816993 | 4.151209e-52 | -8.615850e-47 |
| Msa0673450 | Msa0885280 | 0.842418 | 2.618170e-58 | -8.615850e-47 |
| Msa0673450 | Msa0885290 | 0.830954 | 2.194823e-55 | -8.615850e-47 |
| Msa0673450 | Msa0901400 | 0.810232 | 1.276986e-50 | -8.615850e-47 |
| Msa0673450 | Msa0907070 | 0.823553 | 1.301577e-53 | -8.615850e-47 |
| Msa0673450 | Msa0909120 | 0.810407 | 1.170700e-50 | -8.615850e-47 |
| Msa0673450 | Msa0942200 | 0.809095 | 2.241604e-50 | -8.615850e-47 |
| Msa0673450 | Msa0969260 | 0.806327 | 8.683260e-50 | -8.615850e-47 |
| Msa0673450 | Msa0969450 | 0.804033 | 2.623029e-49 | -8.615850e-47 |
| Msa0673450 | Msa0969520 | 0.821352 | 4.226563e-53 | -8.615850e-47 |
| Msa0673450 | Msa0990350 | 0.807191 | 5.702360e-50 | -8.615850e-47 |
| Msa0673450 | Msa1014540 | 0.845236 | 4.605241e-59 | -8.615850e-47 |
| Msa0673450 | Msa1014990 | 0.835859 | 1.312714e-56 | -8.615850e-47 |
| Msa0673450 | Msa1024240 | 0.830159 | 3.436747e-55 | -8.615850e-47 |
| Msa0673450 | Msa1030970 | 0.818361 | 2.040726e-52 | -8.615850e-47 |
| Msa0673450 | Msa1075220 | -0.803253 | 3.807933e-49 | -8.615850e-47 |
| Msa0673450 | Msa1075540 | 0.821095 | 4.844664e-53 | -8.615850e-47 |
| Msa0673450 | Msa1075650 | 0.803042 | 4.209535e-49 | -8.615850e-47 |
| Msa0673450 | Msa1079180 | 0.804937 | 1.699587e-49 | -8.615850e-47 |
| Msa0673450 | Msa1082500 | 0.827636 | 1.402585e-54 | -8.615850e-47 |
| Msa0673450 | Msa1085740 | 0.804563 | 2.034653e-49 | -8.615850e-47 |
| Msa0673450 | Msa1092990 | 0.814728 | 1.328957e-51 | -8.615850e-47 |
| Msa0673450 | Msa1100980 | 0.800747 | 1.246735e-48 | -8.615850e-47 |
| Msa0673450 | Msa1109440 | 0.825121 | 5.570737e-54 | -8.615850e-47 |
| Msa0673450 | Msa1136090 | 0.828421 | 9.073199e-55 | -8.615850e-47 |
| Msa0673450 | Msa1137570 | 0.807439 | 5.052431e-50 | -8.615850e-47 |
| Msa0673450 | Msa1146110 | 0.813130 | 2.991319e-51 | -8.615850e-47 |
| Msa0673450 | Msa1160670 | 0.844756 | 6.207274e-59 | -8.615850e-47 |
| Msa0673450 | Msa1160690 | 0.802959 | 4.380708e-49 | -8.615850e-47 |
| Msa0673450 | Msa1162550 | -0.815146 | 1.073656e-51 | -8.615850e-47 |
| Msa0673450 | Msa1169000 | 0.800734 | 1.254370e-48 | -8.615850e-47 |
| Msa0673450 | Msa1174040 | 0.811531 | 6.681808e-51 | -8.615850e-47 |
| Msa0673450 | Msa1184420 | 0.810324 | 1.219748e-50 | -8.615850e-47 |
| Msa0673450 | Msa1187940 | 0.824226 | 9.051945e-54 | -8.615850e-47 |
| Msa0673450 | Msa1187950 | 0.820348 | 7.192616e-53 | -8.615850e-47 |
| Msa0673450 | Msa1190400 | 0.802486 | 5.484072e-49 | -8.615850e-47 |
| Msa0673450 | Msa1205130 | 0.822391 | 2.428943e-53 | -8.615850e-47 |
| Msa0673450 | Msa1226660 | 0.819552 | 1.094083e-52 | -8.615850e-47 |
| Msa0673450 | Msa1233890 | 0.802435 | 5.617762e-49 | -8.615850e-47 |
| Msa0673450 | Msa1236430 | 0.800348 | 1.503238e-48 | -8.615850e-47 |
| Msa0673450 | Msa1244250 | 0.805231 | 1.475344e-49 | -8.615850e-47 |
| Msa0673450 | Msa1249490 | 0.817675 | 2.915438e-52 | -8.615850e-47 |
| Msa0673450 | Msa1253000 | 0.837861 | 4.048200e-57 | -8.615850e-47 |
| Msa0673450 | Msa1253020 | 0.805391 | 1.365359e-49 | -8.615850e-47 |
| Msa0673450 | Msa1269670 | 0.813135 | 2.982684e-51 | -8.615850e-47 |
| Msa0673450 | Msa1270240 | 0.809715 | 1.649911e-50 | -8.615850e-47 |
| Msa0673450 | Msa1277660 | 0.829341 | 5.434364e-55 | -8.615850e-47 |
| Msa0673450 | Msa1283860 | 0.819654 | 1.036715e-52 | -8.615850e-47 |
| Msa0673450 | Msa1284680 | 0.841731 | 3.977923e-58 | -8.615850e-47 |
| Msa0673450 | Msa1285930 | 0.809561 | 1.780447e-50 | -8.615850e-47 |
| Msa0673450 | Msa1297210 | 0.841741 | 3.954138e-58 | -8.615850e-47 |
| Msa0673450 | Msa1306850 | 0.800070 | 1.712402e-48 | -8.615850e-47 |
| Msa0673450 | Msa1308580 | 0.806502 | 7.974093e-50 | -8.615850e-47 |
| Msa0673450 | Msa1308620 | 0.812060 | 5.126248e-51 | -8.615850e-47 |
| Msa0673450 | Msa1324780 | 0.802451 | 5.576242e-49 | -8.615850e-47 |
| Msa0673450 | Msa1342840 | 0.827670 | 1.375901e-54 | -8.615850e-47 |
| Msa0673450 | Msa1353470 | 0.805306 | 1.422465e-49 | -8.615850e-47 |
| Msa0673450 | Msa1359040 | 0.823729 | 1.183937e-53 | -8.615850e-47 |
| Msa0673450 | Msa1372760 | 0.805826 | 1.106831e-49 | -8.615850e-47 |
| Msa0673450 | Msa1390050 | 0.801830 | 7.480690e-49 | -8.615850e-47 |
| Msa0673450 | Msa1392240 | 0.800273 | 1.556802e-48 | -8.615850e-47 |
| Msa0673450 | Msa1397860 | 0.813308 | 2.733585e-51 | -8.615850e-47 |
| Msa0673450 | Msa1402590 | 0.800800 | 1.216099e-48 | -8.615850e-47 |
| Msa0673450 | Msa1404000 | 0.805272 | 1.446020e-49 | -8.615850e-47 |
| Msa0673450 | Msa1411020 | 0.810735 | 9.941788e-51 | -8.615850e-47 |
| Msa0673450 | Msa1424290 | 0.804981 | 1.663845e-49 | -8.615850e-47 |
| Msa0673450 | Msa1433120 | 0.809069 | 2.270668e-50 | -8.615850e-47 |
| Msa0673450 | Msa1434350 | 0.805248 | 1.462893e-49 | -8.615850e-47 |
| Msa0673450 | Msa1438250 | 0.834398 | 3.066484e-56 | -8.615850e-47 |
| Msa0673450 | Msa1439320 | 0.803238 | 3.834966e-49 | -8.615850e-47 |
| Msa0673450 | Msa1452240 | 0.825284 | 5.097145e-54 | -8.615850e-47 |
| Msa0673450 | Msa1464940 | 0.808366 | 3.208461e-50 | -8.615850e-47 |
| Msa0153910 | Msa0673450 | 0.824129 | 9.542081e-54 | -8.615850e-47 |
| Msa0157290 | Msa0673450 | 0.820319 | 7.304053e-53 | -8.615850e-47 |
| Msa0158480 | Msa0673450 | 0.827071 | 1.915841e-54 | -8.615850e-47 |
| Msa0165210 | Msa0673450 | 0.807041 | 6.134051e-50 | -8.615850e-47 |
| Msa0166870 | Msa0673450 | 0.805449 | 1.327667e-49 | -8.615850e-47 |
| Msa0178960 | Msa0673450 | 0.820610 | 6.262128e-53 | -8.615850e-47 |
| Msa0199240 | Msa0673450 | 0.818206 | 2.211675e-52 | -8.615850e-47 |
| Msa0205510 | Msa0673450 | 0.802869 | 4.570553e-49 | -8.615850e-47 |
| Msa0220740 | Msa0673450 | 0.802323 | 5.925920e-49 | -8.615850e-47 |
| Msa0233300 | Msa0673450 | 0.824267 | 8.856622e-54 | -8.615850e-47 |
| Msa0379640 | Msa0673450 | 0.801550 | 8.539889e-49 | -8.615850e-47 |
| Msa0388960 | Msa0673450 | 0.803227 | 3.854745e-49 | -8.615850e-47 |
| Msa0397750 | Msa0673450 | 0.807424 | 5.088367e-50 | -8.615850e-47 |
| Msa0402290 | Msa0673450 | 0.820338 | 7.231069e-53 | -8.615850e-47 |
| Msa0407960 | Msa0673450 | 0.826341 | 2.861428e-54 | -8.615850e-47 |
| Msa0417100 | Msa0673450 | 0.801695 | 7.973464e-49 | -8.615850e-47 |
| Msa0425400 | Msa0673450 | 0.802574 | 5.259750e-49 | -8.615850e-47 |
| Msa0426640 | Msa0673450 | 0.807126 | 5.885126e-50 | -8.615850e-47 |
| Msa0428930 | Msa0673450 | 0.805873 | 1.081561e-49 | -8.615850e-47 |
| Msa0430420 | Msa0673450 | 0.814792 | 1.285989e-51 | -8.615850e-47 |
| Msa0431690 | Msa0673450 | 0.848254 | 6.892614e-60 | -8.615850e-47 |
| Msa0432290 | Msa0673450 | 0.812115 | 4.987488e-51 | -8.615850e-47 |
| Msa0432300 | Msa0673450 | 0.808321 | 3.279565e-50 | -8.615850e-47 |
| Msa0435390 | Msa0673450 | 0.803645 | 3.158082e-49 | -8.615850e-47 |
| Msa0437990 | Msa0673450 | 0.815103 | 1.097335e-51 | -8.615850e-47 |
| Msa0452620 | Msa0673450 | 0.821018 | 5.047303e-53 | -8.615850e-47 |
| Msa0453120 | Msa0673450 | 0.803673 | 3.115866e-49 | -8.615850e-47 |
| Msa0456200 | Msa0673450 | 0.802804 | 4.714935e-49 | -8.615850e-47 |
| Msa0456840 | Msa0673450 | 0.800653 | 1.302644e-48 | -8.615850e-47 |
| Msa0464680 | Msa0673450 | 0.803180 | 3.942471e-49 | -8.615850e-47 |
| Msa0239090 | Msa0673450 | 0.808769 | 2.631727e-50 | -8.615850e-47 |
| Msa0251320 | Msa0673450 | 0.808424 | 3.117829e-50 | -8.615850e-47 |
| Msa0257460 | Msa0673450 | 0.811809 | 5.813090e-51 | -8.615850e-47 |
| Msa0288100 | Msa0673450 | 0.805841 | 1.098837e-49 | -8.615850e-47 |
| Msa0291540 | Msa0673450 | 0.808023 | 3.796845e-50 | -8.615850e-47 |
| Msa0329190 | Msa0673450 | 0.806173 | 9.355341e-50 | -8.615850e-47 |
| Msa0337900 | Msa0673450 | 0.803744 | 3.011589e-49 | -8.615850e-47 |
| Msa0355220 | Msa0673450 | 0.812751 | 3.620525e-51 | -8.615850e-47 |
| Msa0484780 | Msa0673450 | 0.806594 | 7.624789e-50 | -8.615850e-47 |
| Msa0512900 | Msa0673450 | 0.832363 | 9.868571e-56 | -8.615850e-47 |
| Msa0516170 | Msa0673450 | 0.802242 | 6.155748e-49 | -8.615850e-47 |
| Msa0523940 | Msa0673450 | 0.803009 | 4.276962e-49 | -8.615850e-47 |
| Msa0554050 | Msa0673450 | 0.814891 | 1.223151e-51 | -8.615850e-47 |
| Msa0554740 | Msa0673450 | 0.801925 | 7.152831e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673450 | MtrunA17_Chr4g0014101 | 88.184 | 347 | 40 | 1 | 1 | 346 | 1 | 347 | 0.0 | 582 |
| Msa0673450 | MtrunA17_Chr4g0014111 | 85.263 | 285 | 38 | 2 | 1 | 281 | 1 | 285 | 3.30e-175 | 488 |
| Msa0673450 | MtrunA17_Chr4g0014141 | 64.756 | 349 | 110 | 4 | 2 | 346 | 1 | 340 | 1.08e-158 | 447 |
| Msa0673450 | MtrunA17_Chr4g0014161 | 67.372 | 331 | 102 | 1 | 9 | 339 | 10 | 334 | 9.72e-158 | 446 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673450 | AT1G33970.1 | 56.119 | 335 | 137 | 2 | 2 | 336 | 6 | 330 | 5.85e-126 | 365 |
| Msa0673450 | AT1G33970.2 | 56.119 | 335 | 137 | 2 | 2 | 336 | 6 | 330 | 5.85e-126 | 365 |
| Msa0673450 | AT1G33970.4 | 56.119 | 335 | 137 | 2 | 2 | 336 | 6 | 330 | 5.85e-126 | 365 |
| Msa0673450 | AT1G33970.5 | 56.119 | 335 | 137 | 2 | 2 | 336 | 6 | 330 | 5.85e-126 | 365 |
| Msa0673450 | AT1G33970.3 | 56.071 | 280 | 113 | 2 | 2 | 281 | 6 | 275 | 1.42e-104 | 308 |
| Msa0673450 | AT1G33960.1 | 51.399 | 286 | 134 | 2 | 18 | 303 | 35 | 315 | 3.46e-91 | 277 |
| Msa0673450 | AT1G33960.2 | 51.399 | 286 | 134 | 2 | 18 | 303 | 59 | 339 | 6.51e-91 | 277 |
| Msa0673450 | AT4G09940.1 | 45.277 | 307 | 162 | 5 | 21 | 324 | 39 | 342 | 2.00e-90 | 276 |
| Msa0673450 | AT4G09940.2 | 45.277 | 307 | 162 | 5 | 21 | 324 | 82 | 385 | 1.34e-89 | 276 |
| Msa0673450 | AT1G33930.1 | 46.528 | 288 | 144 | 2 | 9 | 296 | 24 | 301 | 6.82e-87 | 265 |
| Msa0673450 | AT1G33900.1 | 45.395 | 304 | 155 | 4 | 25 | 327 | 14 | 307 | 8.58e-87 | 265 |
| Msa0673450 | AT1G33950.1 | 48.162 | 272 | 140 | 1 | 25 | 296 | 12 | 282 | 3.33e-85 | 260 |
| Msa0673450 | AT4G09950.1 | 44.012 | 334 | 179 | 6 | 18 | 346 | 6 | 336 | 3.25e-84 | 258 |
| Msa0673450 | AT1G33950.2 | 47.794 | 272 | 135 | 3 | 25 | 296 | 12 | 276 | 2.99e-79 | 244 |
| Msa0673450 | AT2G26820.2 | 42.532 | 308 | 173 | 3 | 30 | 336 | 6 | 310 | 1.61e-76 | 239 |
| Msa0673450 | AT2G26820.4 | 42.532 | 308 | 173 | 3 | 30 | 336 | 6 | 310 | 3.94e-76 | 239 |
| Msa0673450 | AT4G09930.1 | 40.058 | 347 | 194 | 8 | 2 | 346 | 1 | 335 | 2.09e-75 | 236 |
| Msa0673450 | AT2G26820.3 | 42.532 | 308 | 173 | 3 | 30 | 336 | 6 | 310 | 8.21e-75 | 239 |
| Msa0673450 | AT2G26820.1 | 44.803 | 279 | 149 | 3 | 30 | 307 | 6 | 280 | 1.59e-74 | 238 |
| Msa0673450 | AT1G33890.1 | 43.657 | 268 | 150 | 1 | 29 | 296 | 13 | 279 | 1.69e-72 | 228 |
| Msa0673450 | AT1G33890.2 | 43.657 | 268 | 150 | 1 | 29 | 296 | 13 | 279 | 1.69e-72 | 228 |
| Msa0673450 | AT1G33910.1 | 46.545 | 275 | 136 | 6 | 25 | 296 | 8 | 274 | 1.32e-71 | 225 |
| Msa0673450 | AT1G33830.1 | 50.490 | 204 | 101 | 0 | 32 | 235 | 11 | 214 | 1.53e-67 | 212 |
| Msa0673450 | AT1G33870.1 | 42.570 | 249 | 141 | 1 | 54 | 302 | 1 | 247 | 9.36e-66 | 208 |
| Msa0673450 | AT4G09950.2 | 41.111 | 270 | 151 | 6 | 82 | 346 | 7 | 273 | 1.78e-55 | 182 |
| Msa0673450 | AT1G33880.2 | 41.063 | 207 | 116 | 2 | 29 | 235 | 23 | 223 | 6.46e-55 | 180 |
| Msa0673450 | AT1G33880.1 | 41.063 | 207 | 116 | 2 | 29 | 235 | 23 | 223 | 6.46e-55 | 180 |
Find 78 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTTGCAGACATTATT+TGG | 0.173812 | 4_4:-19754616 | Msa0673450:CDS |
| GCAACCGGTAATAGTATTAT+TGG | 0.242098 | 4_4:-19755488 | Msa0673450:CDS |
| GATACACTTGCCGATTATTT+AGG | 0.253738 | 4_4:-19754529 | Msa0673450:CDS |
| TCTGCTGGATCCGAGTTTAT+TGG | 0.254269 | 4_4:-19754745 | Msa0673450:CDS |
| GATTTGTTTAAACTTTCTTC+TGG | 0.272702 | 4_4:-19751973 | Msa0673450:three_prime_UTR |
| TGAAGCTCGGACAGTGGTTT+TGG | 0.303565 | 4_4:-19755537 | Msa0673450:CDS |
| CTGCTGGATCCGAGTTTATT+GGG | 0.308339 | 4_4:-19754744 | Msa0673450:CDS |
| TTTCCCAATAATACTATTAC+CGG | 0.320204 | 4_4:+19755484 | None:intergenic |
| TGCAAATAACTCGTGTGTAT+AGG | 0.336340 | 4_4:+19753743 | None:intergenic |
| GCAAATAACTCGTGTGTATA+GGG | 0.339503 | 4_4:+19753744 | None:intergenic |
| GAAGTTATGTTGAAGATGAT+TGG | 0.342560 | 4_4:-19755607 | Msa0673450:CDS |
| AGTTGAAGGTGTCAACTAAA+AGG | 0.357458 | 4_4:-19752192 | Msa0673450:CDS |
| TAATAGTATTATTGGGAAAC+AGG | 0.362344 | 4_4:-19755480 | Msa0673450:CDS |
| ATGAACATCATTAGCTGATC+TGG | 0.366970 | 4_4:+19755571 | None:intergenic |
| GCAAAGAAAGATTGATTCCT+TGG | 0.383767 | 4_4:-19753599 | Msa0673450:CDS |
| GTAGATTGAGTCAAAGTTGA+AGG | 0.399631 | 4_4:-19752206 | Msa0673450:intron |
| TCAGTGATTGGAATTTATGA+TGG | 0.402832 | 4_4:-19755633 | Msa0673450:exon |
| AAGTTATGTTGAAGATGATT+GGG | 0.420774 | 4_4:-19755606 | Msa0673450:CDS |
| ACATTCACCGCCTAAATAAT+CGG | 0.431303 | 4_4:+19754519 | None:intergenic |
| CTCCGCAAGCGAGGTGGTAA+TGG | 0.433495 | 4_4:-19752040 | Msa0673450:CDS |
| CAACCGGTAATAGTATTATT+GGG | 0.436442 | 4_4:-19755487 | Msa0673450:CDS |
| TTGGTTGGCCGTACAGGCAA+TGG | 0.440299 | 4_4:-19755518 | Msa0673450:CDS |
| GGATTATTTGAAGTTTCTGC+TGG | 0.441692 | 4_4:-19754760 | Msa0673450:CDS |
| AGGTCGAGGGCTAGCTCGTC+CGG | 0.446801 | 4_4:-19755452 | Msa0673450:CDS |
| CGAGTTATTTGCAGAGCTAA+AGG | 0.447267 | 4_4:-19753733 | Msa0673450:intron |
| CTATATGATCGTGGTCTTCA+CGG | 0.451497 | 4_4:-19754578 | Msa0673450:CDS |
| GTGGTCTTCACGGGAGGGGA+TGG | 0.461079 | 4_4:-19754568 | Msa0673450:CDS |
| AGCAGAAGACAATGCAAAGT+TGG | 0.468961 | 4_4:-19752128 | Msa0673450:CDS |
| CAGTGATTGGAATTTATGAT+GGG | 0.469087 | 4_4:-19755632 | Msa0673450:exon |
| GGCAATGGGAAAAGTGCAAC+CGG | 0.488294 | 4_4:-19755503 | Msa0673450:CDS |
| TGGTTGGCCGTACAGGCAAT+GGG | 0.494616 | 4_4:-19755517 | Msa0673450:CDS |
| AGAAAGATTGATTCCTTGGA+AGG | 0.503880 | 4_4:-19753595 | Msa0673450:CDS |
| GAGCAATGGAACTGCATAGC+GGG | 0.506391 | 4_4:-19753621 | Msa0673450:CDS |
| TCTCTTTGACAACAAGACTA+AGG | 0.507101 | 4_4:-19753844 | Msa0673450:CDS |
| TGCATAGACTTTGCCAAGGA+TGG | 0.507813 | 4_4:-19754706 | Msa0673450:CDS |
| TGAATGTCCAGAGTCTTTGA+AGG | 0.507892 | 4_4:-19754503 | Msa0673450:intron |
| AAGGACGAAAAGAAGCGATC+TGG | 0.516709 | 4_4:-19753825 | Msa0673450:CDS |
| GTCAATGTTATTGACACTCC+AGG | 0.521632 | 4_4:-19755377 | Msa0673450:intron |
| GACAGATAACACCACAAGAA+TGG | 0.522190 | 4_4:+19754675 | None:intergenic |
| TATATGATCGTGGTCTTCAC+GGG | 0.533417 | 4_4:-19754577 | Msa0673450:CDS |
| GGGGATGGACTAGAAGATGA+TGG | 0.534525 | 4_4:-19754553 | Msa0673450:CDS |
| GAAGGTGTCAACTAAAAGGC+TGG | 0.535970 | 4_4:-19752188 | Msa0673450:CDS |
| AATGGCATGGATACCATCCT+TGG | 0.542900 | 4_4:+19754693 | None:intergenic |
| GTGATTGGAATTTATGATGG+GGG | 0.545427 | 4_4:-19755630 | Msa0673450:exon |
| GATCGTGGTCTTCACGGGAG+GGG | 0.549312 | 4_4:-19754572 | Msa0673450:CDS |
| AACCATTACCACCTCGCTTG+CGG | 0.557199 | 4_4:+19752038 | None:intergenic |
| TATTTCTTTCCCAATAAACT+CGG | 0.557662 | 4_4:+19754735 | None:intergenic |
| TAGCAAATCCTCTCTTTGTG+TGG | 0.559170 | 4_4:-19753879 | Msa0673450:CDS |
| AGCAAATCCTCTCTTTGTGT+GGG | 0.561083 | 4_4:-19753878 | Msa0673450:CDS |
| TGATAGTATCACAGAATGGT+GGG | 0.562437 | 4_4:-19753770 | Msa0673450:CDS |
| ATATTTCAGCTAATGAAGCT+CGG | 0.568952 | 4_4:-19755550 | Msa0673450:CDS |
| AGCAGCATGCATTTCACAAG+AGG | 0.571620 | 4_4:+19755421 | None:intergenic |
| TGATTGGAATTTATGATGGG+GGG | 0.573203 | 4_4:-19755629 | Msa0673450:exon |
| AGCTAATGAAGCTCGGACAG+TGG | 0.575504 | 4_4:-19755543 | Msa0673450:CDS |
| ACAATGAAATACGAAAACTA+AGG | 0.582337 | 4_4:-19752090 | Msa0673450:CDS |
| TTGATTGCAGAAAGGAGCAA+TGG | 0.584225 | 4_4:-19753635 | Msa0673450:intron |
| CATGAAGAACTCCGCAAGCG+AGG | 0.587165 | 4_4:-19752049 | Msa0673450:CDS |
| TGATCGTGGTCTTCACGGGA+GGG | 0.592418 | 4_4:-19754573 | Msa0673450:CDS |
| AACGATTCCCACACAAAGAG+AGG | 0.592811 | 4_4:+19753871 | None:intergenic |
| TTGATAGTATCACAGAATGG+TGG | 0.594891 | 4_4:-19753771 | Msa0673450:CDS |
| AGCGCTACTAGATCATAGAA+TGG | 0.596677 | 4_4:+19752012 | None:intergenic |
| GCTAAAACATATTACTGAGA+CGG | 0.608958 | 4_4:-19753512 | Msa0673450:intron |
| ATGATCGTGGTCTTCACGGG+AGG | 0.612755 | 4_4:-19754574 | Msa0673450:CDS |
| ACACTTGCCGATTATTTAGG+CGG | 0.621336 | 4_4:-19754526 | Msa0673450:CDS |
| AAAACTAAGGAAGAATCTTG+AGG | 0.621998 | 4_4:-19752077 | Msa0673450:CDS |
| AGCTTGATAGTATCACAGAA+TGG | 0.625086 | 4_4:-19753774 | Msa0673450:CDS |
| TGGTATCCATGCCATTCTTG+TGG | 0.626101 | 4_4:-19754686 | Msa0673450:CDS |
| CATGCTGCTGAGTTGAGTGA+TGG | 0.628624 | 4_4:-19755407 | Msa0673450:CDS |
| AGTGATTGGAATTTATGATG+GGG | 0.631678 | 4_4:-19755631 | Msa0673450:exon |
| TTCACAAGAGGAAGTGACAC+CGG | 0.638052 | 4_4:+19755433 | None:intergenic |
| GCATATGCAGCAAACATACG+AGG | 0.641389 | 4_4:-19753539 | Msa0673450:CDS |
| ATAACACCACAAGAATGGCA+TGG | 0.647650 | 4_4:+19754680 | None:intergenic |
| GATTGTTGACTATATGATCG+TGG | 0.655429 | 4_4:-19754587 | Msa0673450:CDS |
| GAAGAACTCCGCAAGCGAGG+TGG | 0.663684 | 4_4:-19752046 | Msa0673450:CDS |
| TGTCAGATCACGATTTAGCG+AGG | 0.673590 | 4_4:-19754656 | Msa0673450:CDS |
| CAAGTGCATAGACTTTGCCA+AGG | 0.679540 | 4_4:-19754710 | Msa0673450:CDS |
| ACTAAGGAAGAATCTTGAGG+AGG | 0.695240 | 4_4:-19752074 | Msa0673450:CDS |
| GGAGCAATGGAACTGCATAG+CGG | 0.743379 | 4_4:-19753622 | Msa0673450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAATAAAAACATAAATAT+GGG | + | chr4_4:19753187-19753206 | None:intergenic | 10.0% |
| !! | ATAGAATAAAAACATAAATA+TGG | + | chr4_4:19753188-19753207 | None:intergenic | 10.0% |
| !! | TTATTATTACTCTTAATAAA+AGG | - | chr4_4:19753272-19753291 | Msa0673450:intron | 10.0% |
| !!! | TACTTTTCTTTTTTAAATTA+CGG | + | chr4_4:19753631-19753650 | None:intergenic | 10.0% |
| !! | TTTAATAAGGAAAATAATTA+TGG | - | chr4_4:19754727-19754746 | Msa0673450:CDS | 10.0% |
| !!! | GTTTAGATTTTATAAAAAAT+TGG | - | chr4_4:19755012-19755031 | Msa0673450:intron | 10.0% |
| !! | TTAAATATCTCAATTATTAC+CGG | - | chr4_4:19752328-19752347 | Msa0673450:intron | 15.0% |
| !!! | TAAAACATCGTTAATTTTTT+AGG | - | chr4_4:19752431-19752450 | Msa0673450:intron | 15.0% |
| !!! | AAAACATCGTTAATTTTTTA+GGG | - | chr4_4:19752432-19752451 | Msa0673450:intron | 15.0% |
| !!! | TAATTTTGTTGATCTTTAAT+TGG | - | chr4_4:19753708-19753727 | Msa0673450:intron | 15.0% |
| !! | AATATTAGGAATTAAGTAAT+GGG | - | chr4_4:19754429-19754448 | Msa0673450:intron | 15.0% |
| !!! | TTATTTTCCTTATTAAAAGT+TGG | + | chr4_4:19754724-19754743 | None:intergenic | 15.0% |
| !!! | TAGATTTTATAAAAAATTGG+AGG | - | chr4_4:19755015-19755034 | Msa0673450:intron | 15.0% |
| !!! | TTAACGATGTTTTATTTCTA+GGG | + | chr4_4:19752425-19752444 | None:intergenic | 20.0% |
| !!! | ATTAACGATGTTTTATTTCT+AGG | + | chr4_4:19752426-19752445 | None:intergenic | 20.0% |
| !! | TATATTACTTCAAAAACACT+TGG | + | chr4_4:19753556-19753575 | None:intergenic | 20.0% |
| !! | TTGAAAAATATAGACACAAA+AGG | + | chr4_4:19754140-19754159 | None:intergenic | 20.0% |
| !! | CAATATTAGGAATTAAGTAA+TGG | - | chr4_4:19754428-19754447 | Msa0673450:intron | 20.0% |
| !!! | TATATTCTTTTTCCATTTCA+TGG | - | chr4_4:19754456-19754475 | Msa0673450:intron | 20.0% |
| !!! | ATATTCTTTTTCCATTTCAT+GGG | - | chr4_4:19754457-19754476 | Msa0673450:intron | 20.0% |
| !!! | TTTGGTATTTTAAAAAGTTG+TGG | - | chr4_4:19754528-19754547 | Msa0673450:CDS | 20.0% |
| !! | AATAAGGAAAATAATTATGG+AGG | - | chr4_4:19754730-19754749 | Msa0673450:CDS | 20.0% |
| !! | ATAAGGAAAATAATTATGGA+GGG | - | chr4_4:19754731-19754750 | Msa0673450:CDS | 20.0% |
| !! | TCTAAACCAAAATCATAATT+AGG | + | chr4_4:19754999-19755018 | None:intergenic | 20.0% |
| !!! | TTTATTAATCCTTTGAGAAA+TGG | - | chr4_4:19755116-19755135 | Msa0673450:intron | 20.0% |
| !! | TATGCTAATATATGTGAAAA+AGG | + | chr4_4:19755195-19755214 | None:intergenic | 20.0% |
| !! | TATGTGTTAGATCAATTATA+TGG | - | chr4_4:19755391-19755410 | Msa0673450:CDS | 20.0% |
| !!! | TTGAATTTGTTTTCAGTGAT+TGG | - | chr4_4:19751979-19751998 | Msa0673450:three_prime_UTR | 25.0% |
| ! | AAGTTATGTTGAAGATGATT+GGG | - | chr4_4:19752018-19752037 | Msa0673450:exon | 25.0% |
| ! | TTTCCCAATAATACTATTAC+CGG | + | chr4_4:19752143-19752162 | None:intergenic | 25.0% |
| ! | TAATAGTATTATTGGGAAAC+AGG | - | chr4_4:19752144-19752163 | Msa0673450:CDS | 25.0% |
| ! | ATCTCCTTTGTATATGTAAA+GGG | + | chr4_4:19752602-19752621 | None:intergenic | 25.0% |
| ! | TTTCATGTTTCTTACAAGAT+TGG | - | chr4_4:19752625-19752644 | Msa0673450:intron | 25.0% |
| ! | ATGCTGAGAATAAAAATCAT+CGG | + | chr4_4:19752681-19752700 | None:intergenic | 25.0% |
| !! | TTTAACCTGAAAAGTTTTAC+AGG | - | chr4_4:19752843-19752862 | Msa0673450:intron | 25.0% |
| !! | ATAATCCTGTAAAACTTTTC+AGG | + | chr4_4:19752851-19752870 | None:intergenic | 25.0% |
| ! | TATTTCTTTCCCAATAAACT+CGG | + | chr4_4:19752892-19752911 | None:intergenic | 25.0% |
| !!! | AGTCTTCTTACACATTTTTT+TGG | - | chr4_4:19753357-19753376 | Msa0673450:intron | 25.0% |
| !! | GCTTGAATATCTAGAATTAT+AGG | - | chr4_4:19753406-19753425 | Msa0673450:intron | 25.0% |
| !!! | TTTTTCTTTAAGGGTGTTTT+TGG | + | chr4_4:19753684-19753703 | None:intergenic | 25.0% |
| !! | CAATCTTGTTTCTTAAATCT+TGG | - | chr4_4:19753935-19753954 | Msa0673450:intron | 25.0% |
| !! | TTCATATATTGATTGCAGAA+AGG | - | chr4_4:19753981-19754000 | Msa0673450:intron | 25.0% |
| ! | ATGTCTATTACAAATTCACA+AGG | + | chr4_4:19754498-19754517 | None:intergenic | 25.0% |
| ! | TGTTTCCATTTATGTATGTA+CGG | - | chr4_4:19754697-19754716 | Msa0673450:CDS | 25.0% |
| ! | TAGTTATTTGCAGTTTCTAT+AGG | - | chr4_4:19754791-19754810 | Msa0673450:intron | 25.0% |
| ! | ATAAATTGTCAAACCTAGTT+TGG | - | chr4_4:19754901-19754920 | Msa0673450:intron | 25.0% |
| ! | AACCAAAATCATAATTAGGA+TGG | + | chr4_4:19754995-19755014 | None:intergenic | 25.0% |
| ! | ATCTAACACATAAATACTAG+GGG | + | chr4_4:19755383-19755402 | None:intergenic | 25.0% |
| ! | GATCTAACACATAAATACTA+GGG | + | chr4_4:19755384-19755403 | None:intergenic | 25.0% |
| ! | TGATCTAACACATAAATACT+AGG | + | chr4_4:19755385-19755404 | None:intergenic | 25.0% |
| ! | ACAATGAAATACGAAAACTA+AGG | - | chr4_4:19755534-19755553 | Msa0673450:CDS | 25.0% |
| !! | GATTTGTTTAAACTTTCTTC+TGG | - | chr4_4:19755651-19755670 | Msa0673450:five_prime_UTR | 25.0% |
| TCAGTGATTGGAATTTATGA+TGG | - | chr4_4:19751991-19752010 | Msa0673450:three_prime_UTR | 30.0% | |
| CAGTGATTGGAATTTATGAT+GGG | - | chr4_4:19751992-19752011 | Msa0673450:three_prime_UTR | 30.0% | |
| AGTGATTGGAATTTATGATG+GGG | - | chr4_4:19751993-19752012 | Msa0673450:three_prime_UTR | 30.0% | |
| GAAGTTATGTTGAAGATGAT+TGG | - | chr4_4:19752017-19752036 | Msa0673450:exon | 30.0% | |
| ATATTTCAGCTAATGAAGCT+CGG | - | chr4_4:19752074-19752093 | Msa0673450:CDS | 30.0% | |
| CAACCGGTAATAGTATTATT+GGG | - | chr4_4:19752137-19752156 | Msa0673450:CDS | 30.0% | |
| ! | TTATTGGGAAACAGGTTTTT+AGG | - | chr4_4:19752152-19752171 | Msa0673450:CDS | 30.0% |
| ACATTTCATCCTACAAAACA+CGG | + | chr4_4:19752501-19752520 | None:intergenic | 30.0% | |
| GTATATGTAAAGGGTCTTTA+AGG | + | chr4_4:19752593-19752612 | None:intergenic | 30.0% | |
| AAGACCCTTTACATATACAA+AGG | - | chr4_4:19752595-19752614 | Msa0673450:intron | 30.0% | |
| CATCTCCTTTGTATATGTAA+AGG | + | chr4_4:19752603-19752622 | None:intergenic | 30.0% | |
| ! | TATTCTCAGCATGAAGTTTT+TGG | - | chr4_4:19752689-19752708 | Msa0673450:intron | 30.0% |
| CATAACTCAAACAAAACCAT+AGG | + | chr4_4:19752761-19752780 | None:intergenic | 30.0% | |
| !! | CAAACTTTTCAAGAAGTAGA+AGG | + | chr4_4:19752817-19752836 | None:intergenic | 30.0% |
| ATAAAAACCTTCAAAGACTC+TGG | + | chr4_4:19753131-19753150 | None:intergenic | 30.0% | |
| TTTGGATTGAGGATTTAGAA+GGG | + | chr4_4:19753666-19753685 | None:intergenic | 30.0% | |
| ! | TTTTGGATTGAGGATTTAGA+AGG | + | chr4_4:19753667-19753686 | None:intergenic | 30.0% |
| GCTAAAACATATTACTGAGA+CGG | - | chr4_4:19754112-19754131 | Msa0673450:intron | 30.0% | |
| TATATACATGCATTTCTGCA+TGG | - | chr4_4:19754256-19754275 | Msa0673450:intron | 30.0% | |
| TCAATGCTGTTAGCTATTAT+TGG | - | chr4_4:19754357-19754376 | Msa0673450:intron | 30.0% | |
| CTTAAAGCTCGTTCAATATT+AGG | - | chr4_4:19754415-19754434 | Msa0673450:intron | 30.0% | |
| TTAGGATTTCAAACAGCTTA+CGG | - | chr4_4:19754581-19754600 | Msa0673450:CDS | 30.0% | |
| ATCTCATTGTTTATTCCTAG+TGG | + | chr4_4:19754763-19754782 | None:intergenic | 30.0% | |
| AATAGATTCCGATCAAAATG+CGG | - | chr4_4:19754871-19754890 | Msa0673450:intron | 30.0% | |
| CATCTTGATCATAAATCTCA+AGG | - | chr4_4:19754929-19754948 | Msa0673450:intron | 30.0% | |
| AATCATAATTAGGATGGAGT+TGG | + | chr4_4:19754989-19755008 | None:intergenic | 30.0% | |
| ! | CTCCATCCTAATTATGATTT+TGG | - | chr4_4:19754990-19755009 | Msa0673450:intron | 30.0% |
| ! | TTAATCCTTTGAGAAATGGA+TGG | - | chr4_4:19755120-19755139 | Msa0673450:intron | 30.0% |
| ! | TAATCCTTTGAGAAATGGAT+GGG | - | chr4_4:19755121-19755140 | Msa0673450:intron | 30.0% |
| TGAAAAAGGAAACTGTTAGT+TGG | + | chr4_4:19755181-19755200 | None:intergenic | 30.0% | |
| TCTGTCATGTGAATATTTAG+AGG | + | chr4_4:19755324-19755343 | None:intergenic | 30.0% | |
| AAAACTAAGGAAGAATCTTG+AGG | - | chr4_4:19755547-19755566 | Msa0673450:CDS | 30.0% | |
| GTGATTGGAATTTATGATGG+GGG | - | chr4_4:19751994-19752013 | Msa0673450:three_prime_UTR | 35.0% | |
| ! | TGATTGGAATTTATGATGGG+GGG | - | chr4_4:19751995-19752014 | Msa0673450:three_prime_UTR | 35.0% |
| ATGAACATCATTAGCTGATC+TGG | + | chr4_4:19752056-19752075 | None:intergenic | 35.0% | |
| GCAACCGGTAATAGTATTAT+TGG | - | chr4_4:19752136-19752155 | Msa0673450:CDS | 35.0% | |
| TATGTAGGCATGTATTTACC+TGG | + | chr4_4:19752268-19752287 | None:intergenic | 35.0% | |
| AGGTAAATACATGCCTACAT+AGG | - | chr4_4:19752267-19752286 | Msa0673450:intron | 35.0% | |
| ! | TTTGGTATTCGTGTTTCTGT+TGG | - | chr4_4:19752364-19752383 | Msa0673450:intron | 35.0% |
| !! | TGTTTCTGTTGGTGATTTGT+AGG | - | chr4_4:19752375-19752394 | Msa0673450:intron | 35.0% |
| ATTAGTCGAGTTTAAACCGA+GGG | - | chr4_4:19752537-19752556 | Msa0673450:intron | 35.0% | |
| ! | GGATTATTTGAAGTTTCTGC+TGG | - | chr4_4:19752864-19752883 | Msa0673450:intron | 35.0% |
| ! | GATTGTTGACTATATGATCG+TGG | - | chr4_4:19753037-19753056 | Msa0673450:intron | 35.0% |
| ! | GATACACTTGCCGATTATTT+AGG | - | chr4_4:19753095-19753114 | Msa0673450:intron | 35.0% |
| ACATTCACCGCCTAAATAAT+CGG | + | chr4_4:19753108-19753127 | None:intergenic | 35.0% | |
| TGATTCGTATCACTAAAGGA+GGG | + | chr4_4:19753331-19753350 | None:intergenic | 35.0% | |
| CTAGTGATTCGTATCACTAA+AGG | + | chr4_4:19753335-19753354 | None:intergenic | 35.0% | |
| TTATAGGAAAGTCTATCTGC+TGG | - | chr4_4:19753422-19753441 | Msa0673450:intron | 35.0% | |
| TTGGATTGAGGATTTAGAAG+GGG | + | chr4_4:19753665-19753684 | None:intergenic | 35.0% | |
| !!! | TTAAGGGTGTTTTTGGATTG+AGG | + | chr4_4:19753677-19753696 | None:intergenic | 35.0% |
| TCTCTTTGACAACAAGACTA+AGG | - | chr4_4:19753780-19753799 | Msa0673450:CDS | 35.0% | |
| ! | AGCTTGATAGTATCACAGAA+TGG | - | chr4_4:19753850-19753869 | Msa0673450:CDS | 35.0% |
| ! | TTGATAGTATCACAGAATGG+TGG | - | chr4_4:19753853-19753872 | Msa0673450:CDS | 35.0% |
| TGATAGTATCACAGAATGGT+GGG | - | chr4_4:19753854-19753873 | Msa0673450:CDS | 35.0% | |
| GCAAATAACTCGTGTGTATA+GGG | + | chr4_4:19753883-19753902 | None:intergenic | 35.0% | |
| TGCAAATAACTCGTGTGTAT+AGG | + | chr4_4:19753884-19753903 | None:intergenic | 35.0% | |
| ! | GCAAAGAAAGATTGATTCCT+TGG | - | chr4_4:19754025-19754044 | Msa0673450:intron | 35.0% |
| ! | AGAAAGATTGATTCCTTGGA+AGG | - | chr4_4:19754029-19754048 | Msa0673450:intron | 35.0% |
| ! | TTCTTTTGAATGTCCTTCCA+AGG | + | chr4_4:19754045-19754064 | None:intergenic | 35.0% |
| ! | CAGCATTGAATGCAACTAAT+TGG | + | chr4_4:19754346-19754365 | None:intergenic | 35.0% |
| !!! | GTTTTGACTTGATGTCACTT+AGG | - | chr4_4:19754381-19754400 | Msa0673450:intron | 35.0% |
| ! | TTTTCCATTTCATGGGTCAT+AGG | - | chr4_4:19754464-19754483 | Msa0673450:intron | 35.0% |
| TTACAAATTCACAAGGCCAT+TGG | + | chr4_4:19754491-19754510 | None:intergenic | 35.0% | |
| ATAGACATTAAGCGTGTGTT+TGG | - | chr4_4:19754510-19754529 | Msa0673450:CDS | 35.0% | |
| !! | TTGGGTTGAAGCTAAAACTT+AGG | - | chr4_4:19754563-19754582 | Msa0673450:CDS | 35.0% |
| TTGGTCCGTACATACATAAA+TGG | + | chr4_4:19754705-19754724 | None:intergenic | 35.0% | |
| ! | GTACGGACCAACTTTTAATA+AGG | - | chr4_4:19754714-19754733 | Msa0673450:CDS | 35.0% |
| !! | TTGCTTAACCGCATTTTGAT+CGG | + | chr4_4:19754882-19754901 | None:intergenic | 35.0% |
| !! | TAAGCCCTCTTGTTTGATTT+TGG | - | chr4_4:19755054-19755073 | Msa0673450:intron | 35.0% |
| GAGTCCAAAATCAAACAAGA+GGG | + | chr4_4:19755061-19755080 | None:intergenic | 35.0% | |
| GTAGATTGAGTCAAAGTTGA+AGG | - | chr4_4:19755418-19755437 | Msa0673450:CDS | 35.0% | |
| !! | AGTTGAAGGTGTCAACTAAA+AGG | - | chr4_4:19755432-19755451 | Msa0673450:CDS | 35.0% |
| !!! | GAAACAGGTTTTTAGGTCGA+GGG | - | chr4_4:19752159-19752178 | Msa0673450:CDS | 40.0% |
| GTCAATGTTATTGACACTCC+AGG | - | chr4_4:19752247-19752266 | Msa0673450:intron | 40.0% | |
| TGACTGTCAATAGCCTATGT+AGG | + | chr4_4:19752283-19752302 | None:intergenic | 40.0% | |
| ACCAAAAACAACACAGACAC+CGG | + | chr4_4:19752350-19752369 | None:intergenic | 40.0% | |
| ! | TAAGCACCCCATTTCGTTTT+TGG | - | chr4_4:19752466-19752485 | Msa0673450:intron | 40.0% |
| ACGGACACCAAAAACGAAAT+GGG | + | chr4_4:19752476-19752495 | None:intergenic | 40.0% | |
| ! | GATTAGTCGAGTTTAAACCG+AGG | - | chr4_4:19752536-19752555 | Msa0673450:intron | 40.0% |
| !! | CCATAGGTGTTACTTGTTTC+AGG | + | chr4_4:19752745-19752764 | None:intergenic | 40.0% |
| CCTGAAACAAGTAACACCTA+TGG | - | chr4_4:19752742-19752761 | Msa0673450:intron | 40.0% | |
| ATAACACCACAAGAATGGCA+TGG | + | chr4_4:19752947-19752966 | None:intergenic | 40.0% | |
| GACAGATAACACCACAAGAA+TGG | + | chr4_4:19752952-19752971 | None:intergenic | 40.0% | |
| TGCAGCTTGCAGACATTATT+TGG | - | chr4_4:19753008-19753027 | Msa0673450:intron | 40.0% | |
| CTATATGATCGTGGTCTTCA+CGG | - | chr4_4:19753046-19753065 | Msa0673450:intron | 40.0% | |
| TATATGATCGTGGTCTTCAC+GGG | - | chr4_4:19753047-19753066 | Msa0673450:intron | 40.0% | |
| ! | ACACTTGCCGATTATTTAGG+CGG | - | chr4_4:19753098-19753117 | Msa0673450:intron | 40.0% |
| TGAATGTCCAGAGTCTTTGA+AGG | - | chr4_4:19753121-19753140 | Msa0673450:intron | 40.0% | |
| GTGATTCGTATCACTAAAGG+AGG | + | chr4_4:19753332-19753351 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr4_4:19753455-19753474 | Msa0673450:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr4_4:19753459-19753478 | Msa0673450:intron | 40.0% | |
| TAGCAAATCCTCTCTTTGTG+TGG | - | chr4_4:19753745-19753764 | Msa0673450:CDS | 40.0% | |
| AGCAAATCCTCTCTTTGTGT+GGG | - | chr4_4:19753746-19753765 | Msa0673450:CDS | 40.0% | |
| CGAGTTATTTGCAGAGCTAA+AGG | - | chr4_4:19753891-19753910 | Msa0673450:intron | 40.0% | |
| GTTATTTGCAGAGCTAAAGG+TGG | - | chr4_4:19753894-19753913 | Msa0673450:intron | 40.0% | |
| TTGATTGCAGAAAGGAGCAA+TGG | - | chr4_4:19753989-19754008 | Msa0673450:intron | 40.0% | |
| TTCAAACAGCTTACGGTGAA+AGG | - | chr4_4:19754588-19754607 | Msa0673450:CDS | 40.0% | |
| TCAAACAGCTTACGGTGAAA+GGG | - | chr4_4:19754589-19754608 | Msa0673450:CDS | 40.0% | |
| GCAAGGTAGTGATGTTCTAT+CGG | - | chr4_4:19754621-19754640 | Msa0673450:CDS | 40.0% | |
| CAAGGTAGTGATGTTCTATC+GGG | - | chr4_4:19754622-19754641 | Msa0673450:CDS | 40.0% | |
| ! | GTGTCTATTTAGTGGGTGTT+TGG | + | chr4_4:19754651-19754670 | None:intergenic | 40.0% |
| GAAGCACGTGTCTATTTAGT+GGG | + | chr4_4:19754658-19754677 | None:intergenic | 40.0% | |
| ! | TAGACACGTGCTTCCATTTT+TGG | - | chr4_4:19754664-19754683 | Msa0673450:CDS | 40.0% |
| !! | AGACACGTGCTTCCATTTTT+GGG | - | chr4_4:19754665-19754684 | Msa0673450:CDS | 40.0% |
| TTGCAGTTTCTATAGGAGTC+AGG | - | chr4_4:19754798-19754817 | Msa0673450:intron | 40.0% | |
| ! | TCTATAGGAGTCAGGACTTT+TGG | - | chr4_4:19754806-19754825 | Msa0673450:intron | 40.0% |
| TAGGTAGGGGAAATTGTACT+GGG | - | chr4_4:19754833-19754852 | Msa0673450:intron | 40.0% | |
| TCAAGATGTGATGCCAAACT+AGG | + | chr4_4:19754917-19754936 | None:intergenic | 40.0% | |
| CGAGTCCAAAATCAAACAAG+AGG | + | chr4_4:19755062-19755081 | None:intergenic | 40.0% | |
| !! | TGTTTGATTTTGGACTCGAG+AGG | - | chr4_4:19755064-19755083 | Msa0673450:intron | 40.0% |
| CGAGAGGAAAAAAGAACTTG+TGG | - | chr4_4:19755080-19755099 | Msa0673450:intron | 40.0% | |
| ATCTCCCATCCATTTCTCAA+AGG | + | chr4_4:19755128-19755147 | None:intergenic | 40.0% | |
| CTGGAGAAACTATCAAGAGT+AGG | - | chr4_4:19755155-19755174 | Msa0673450:intron | 40.0% | |
| GTTGTTCTATGCTTGAACTC+TGG | - | chr4_4:19755290-19755309 | Msa0673450:intron | 40.0% | |
| AGCAGAAGACAATGCAAAGT+TGG | - | chr4_4:19755496-19755515 | Msa0673450:CDS | 40.0% | |
| ACTAAGGAAGAATCTTGAGG+AGG | - | chr4_4:19755550-19755569 | Msa0673450:CDS | 40.0% | |
| AGCGCTACTAGATCATAGAA+TGG | + | chr4_4:19755615-19755634 | None:intergenic | 40.0% | |
| ! | CACTTTTCCCATTGCCTGTA+CGG | + | chr4_4:19752117-19752136 | None:intergenic | 45.0% |
| !!! | GGAAACAGGTTTTTAGGTCG+AGG | - | chr4_4:19752158-19752177 | Msa0673450:CDS | 45.0% |
| TTCACAAGAGGAAGTGACAC+CGG | + | chr4_4:19752194-19752213 | None:intergenic | 45.0% | |
| AGCAGCATGCATTTCACAAG+AGG | + | chr4_4:19752206-19752225 | None:intergenic | 45.0% | |
| !!! | ACCGGTGTCTGTGTTGTTTT+TGG | - | chr4_4:19752346-19752365 | Msa0673450:intron | 45.0% |
| CGGACACCAAAAACGAAATG+GGG | + | chr4_4:19752475-19752494 | None:intergenic | 45.0% | |
| CACGGACACCAAAAACGAAA+TGG | + | chr4_4:19752477-19752496 | None:intergenic | 45.0% | |
| CATCCTACAAAACACGGACA+CGG | + | chr4_4:19752495-19752514 | None:intergenic | 45.0% | |
| GCTCATGATAAGTTGTCCCT+CGG | + | chr4_4:19752556-19752575 | None:intergenic | 45.0% | |
| ! | GGGTCTTTAAGGAATGCGAA+TGG | + | chr4_4:19752582-19752601 | None:intergenic | 45.0% |
| TCTGCTGGATCCGAGTTTAT+TGG | - | chr4_4:19752879-19752898 | Msa0673450:intron | 45.0% | |
| CTGCTGGATCCGAGTTTATT+GGG | - | chr4_4:19752880-19752899 | Msa0673450:intron | 45.0% | |
| CAAGTGCATAGACTTTGCCA+AGG | - | chr4_4:19752914-19752933 | Msa0673450:intron | 45.0% | |
| TGCATAGACTTTGCCAAGGA+TGG | - | chr4_4:19752918-19752937 | Msa0673450:intron | 45.0% | |
| AATGGCATGGATACCATCCT+TGG | + | chr4_4:19752934-19752953 | None:intergenic | 45.0% | |
| TGGTATCCATGCCATTCTTG+TGG | - | chr4_4:19752938-19752957 | Msa0673450:intron | 45.0% | |
| TGTCAGATCACGATTTAGCG+AGG | - | chr4_4:19752968-19752987 | Msa0673450:intron | 45.0% | |
| TCAATCCAAACACACCCTGA+AGG | + | chr4_4:19753449-19753468 | None:intergenic | 45.0% | |
| TTCAGGGTGTGTTTGGATTG+AGG | - | chr4_4:19753448-19753467 | Msa0673450:intron | 45.0% | |
| TCAGGGTGTGTTTGGATTGA+GGG | - | chr4_4:19753449-19753468 | Msa0673450:intron | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr4_4:19753458-19753477 | Msa0673450:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr4_4:19753460-19753479 | Msa0673450:intron | 45.0% | |
| TTGAGGATTTAGAAGGGGAG+AGG | + | chr4_4:19753660-19753679 | None:intergenic | 45.0% | |
| AACGATTCCCACACAAAGAG+AGG | + | chr4_4:19753756-19753775 | None:intergenic | 45.0% | |
| AAGGACGAAAAGAAGCGATC+TGG | - | chr4_4:19753799-19753818 | Msa0673450:CDS | 45.0% | |
| ATTTGCAGAGCTAAAGGTGG+AGG | - | chr4_4:19753897-19753916 | Msa0673450:intron | 45.0% | |
| GCATATGCAGCAAACATACG+AGG | - | chr4_4:19754085-19754104 | Msa0673450:intron | 45.0% | |
| TGGACCTATGACCCATGAAA+TGG | + | chr4_4:19754471-19754490 | None:intergenic | 45.0% | |
| TTCATGGGTCATAGGTCCAA+TGG | - | chr4_4:19754472-19754491 | Msa0673450:intron | 45.0% | |
| ! | TTTAGCTTCAACCCAACGTG+CGG | + | chr4_4:19754559-19754578 | None:intergenic | 45.0% |
| CAAACAGCTTACGGTGAAAG+GGG | - | chr4_4:19754590-19754609 | Msa0673450:CDS | 45.0% | |
| ! | GGAAGCACGTGTCTATTTAG+TGG | + | chr4_4:19754659-19754678 | None:intergenic | 45.0% |
| ACAGTACACGTGCCCAAAAA+TGG | + | chr4_4:19754680-19754699 | None:intergenic | 45.0% | |
| !! | TATGGAGGGTATCTTCCACT+AGG | - | chr4_4:19754745-19754764 | Msa0673450:CDS | 45.0% |
| !! | AGTCAGGACTTTTGGTAGCT+AGG | - | chr4_4:19754814-19754833 | Msa0673450:intron | 45.0% |
| !! | AGGACTTTTGGTAGCTAGGT+AGG | - | chr4_4:19754818-19754837 | Msa0673450:intron | 45.0% |
| !! | GGACTTTTGGTAGCTAGGTA+GGG | - | chr4_4:19754819-19754838 | Msa0673450:intron | 45.0% |
| !! | GACTTTTGGTAGCTAGGTAG+GGG | - | chr4_4:19754820-19754839 | Msa0673450:intron | 45.0% |
| CTAGGTAGGGGAAATTGTAC+TGG | - | chr4_4:19754832-19754851 | Msa0673450:intron | 45.0% | |
| TAGGGGAAATTGTACTGGGA+AGG | - | chr4_4:19754837-19754856 | Msa0673450:intron | 45.0% | |
| TGGATGGGAGATATGTTAGC+TGG | - | chr4_4:19755136-19755155 | Msa0673450:intron | 45.0% | |
| !! | GAAGGTGTCAACTAAAAGGC+TGG | - | chr4_4:19755436-19755455 | Msa0673450:CDS | 45.0% |
| !!! | AATTATTAATTTTTCTTTAA+GGG | + | chr4_4:19753693-19753712 | None:intergenic | 5.0% |
| !!! | AAATTATTAATTTTTCTTTA+AGG | + | chr4_4:19753694-19753713 | None:intergenic | 5.0% |
| AGCTAATGAAGCTCGGACAG+TGG | - | chr4_4:19752081-19752100 | Msa0673450:CDS | 50.0% | |
| ! | TGAAGCTCGGACAGTGGTTT+TGG | - | chr4_4:19752087-19752106 | Msa0673450:CDS | 50.0% |
| ! | GGCAATGGGAAAAGTGCAAC+CGG | - | chr4_4:19752121-19752140 | Msa0673450:CDS | 50.0% |
| ! | CATGCTGCTGAGTTGAGTGA+TGG | - | chr4_4:19752217-19752236 | Msa0673450:intron | 50.0% |
| ! | TGTCCGTGTCCGTGTTTTGT+AGG | - | chr4_4:19752489-19752508 | Msa0673450:intron | 50.0% |
| !! | GGGGATGGACTAGAAGATGA+TGG | - | chr4_4:19753071-19753090 | Msa0673450:intron | 50.0% |
| AGTCTATCTGCTGGACCTTC+AGG | - | chr4_4:19753431-19753450 | Msa0673450:intron | 50.0% | |
| GTCTATCTGCTGGACCTTCA+GGG | - | chr4_4:19753432-19753451 | Msa0673450:intron | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | - | chr4_4:19753464-19753483 | Msa0673450:intron | 50.0% | |
| GGATTTAGAAGGGGAGAGGA+GGG | + | chr4_4:19753656-19753675 | None:intergenic | 50.0% | |
| AGGATTTAGAAGGGGAGAGG+AGG | + | chr4_4:19753657-19753676 | None:intergenic | 50.0% | |
| GGAGCAATGGAACTGCATAG+CGG | - | chr4_4:19754002-19754021 | Msa0673450:intron | 50.0% | |
| GAGCAATGGAACTGCATAGC+GGG | - | chr4_4:19754003-19754022 | Msa0673450:intron | 50.0% | |
| TGAAAGGGGTCTCAAACGCA+AGG | - | chr4_4:19754604-19754623 | Msa0673450:CDS | 50.0% | |
| AACCATTACCACCTCGCTTG+CGG | + | chr4_4:19755589-19755608 | None:intergenic | 50.0% | |
| !!! | GCTCGGACAGTGGTTTTGGT+TGG | - | chr4_4:19752091-19752110 | Msa0673450:CDS | 55.0% |
| !!! | GTGGTTTTGGTTGGCCGTAC+AGG | - | chr4_4:19752100-19752119 | Msa0673450:CDS | 55.0% |
| ! | TTGGTTGGCCGTACAGGCAA+TGG | - | chr4_4:19752106-19752125 | Msa0673450:CDS | 55.0% |
| ! | TGGTTGGCCGTACAGGCAAT+GGG | - | chr4_4:19752107-19752126 | Msa0673450:CDS | 55.0% |
| ATGATCGTGGTCTTCACGGG+AGG | - | chr4_4:19753050-19753069 | Msa0673450:intron | 55.0% | |
| TGATCGTGGTCTTCACGGGA+GGG | - | chr4_4:19753051-19753070 | Msa0673450:intron | 55.0% | |
| CTGGACCTTCAGGGTGTGTT+TGG | - | chr4_4:19753441-19753460 | Msa0673450:intron | 55.0% | |
| AGGGTTTAGGAGGGGAAGGA+AGG | - | chr4_4:19753468-19753487 | Msa0673450:intron | 55.0% | |
| GGGTTTAGGAGGGGAAGGAA+GGG | - | chr4_4:19753469-19753488 | Msa0673450:intron | 55.0% | |
| GGTTTAGGAGGGGAAGGAAG+GGG | - | chr4_4:19753470-19753489 | Msa0673450:intron | 55.0% | |
| TTGTGGTGTGACCGCACGTT+GGG | - | chr4_4:19754545-19754564 | Msa0673450:CDS | 55.0% | |
| CATGAAGAACTCCGCAAGCG+AGG | - | chr4_4:19755575-19755594 | Msa0673450:CDS | 55.0% | |
| GATCGTGGTCTTCACGGGAG+GGG | - | chr4_4:19753052-19753071 | Msa0673450:intron | 60.0% | |
| TTAGGAGGGGAAGGAAGGGG+AGG | - | chr4_4:19753473-19753492 | Msa0673450:intron | 60.0% | |
| TAGGAGGGGAAGGAAGGGGA+GGG | - | chr4_4:19753474-19753493 | Msa0673450:intron | 60.0% | |
| GTTGTGGTGTGACCGCACGT+TGG | - | chr4_4:19754544-19754563 | Msa0673450:CDS | 60.0% | |
| GAAGAACTCCGCAAGCGAGG+TGG | - | chr4_4:19755578-19755597 | Msa0673450:CDS | 60.0% | |
| CTCCGCAAGCGAGGTGGTAA+TGG | - | chr4_4:19755584-19755603 | Msa0673450:CDS | 60.0% | |
| !! | AGGTCGAGGGCTAGCTCGTC+CGG | - | chr4_4:19752172-19752191 | Msa0673450:CDS | 65.0% |
| GTGGTCTTCACGGGAGGGGA+TGG | - | chr4_4:19753056-19753075 | Msa0673450:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 19751949 | 19755697 | 19751949 | ID=Msa0673450;Name=Msa0673450 |
| chr4_4 | mRNA | 19751949 | 19755697 | 19751949 | ID=Msa0673450-mRNA-1;Parent=Msa0673450;Name=Msa0673450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=58|1|1|1|0.75|0.8|5|75|346 |
| chr4_4 | exon | 19751949 | 19752224 | 19751949 | ID=Msa0673450-mRNA-1:exon:5704;Parent=Msa0673450-mRNA-1 |
| chr4_4 | exon | 19753513 | 19753647 | 19753513 | ID=Msa0673450-mRNA-1:exon:5703;Parent=Msa0673450-mRNA-1 |
| chr4_4 | exon | 19753734 | 19753898 | 19753734 | ID=Msa0673450-mRNA-1:exon:5702;Parent=Msa0673450-mRNA-1 |
| chr4_4 | exon | 19754504 | 19754781 | 19754504 | ID=Msa0673450-mRNA-1:exon:5701;Parent=Msa0673450-mRNA-1 |
| chr4_4 | exon | 19755378 | 19755697 | 19755378 | ID=Msa0673450-mRNA-1:exon:5700;Parent=Msa0673450-mRNA-1 |
| chr4_4 | five_prime_UTR | 19755640 | 19755697 | 19755640 | ID=Msa0673450-mRNA-1:five_prime_utr;Parent=Msa0673450-mRNA-1 |
| chr4_4 | CDS | 19755378 | 19755639 | 19755378 | ID=Msa0673450-mRNA-1:cds;Parent=Msa0673450-mRNA-1 |
| chr4_4 | CDS | 19754504 | 19754781 | 19754504 | ID=Msa0673450-mRNA-1:cds;Parent=Msa0673450-mRNA-1 |
| chr4_4 | CDS | 19753734 | 19753898 | 19753734 | ID=Msa0673450-mRNA-1:cds;Parent=Msa0673450-mRNA-1 |
| chr4_4 | CDS | 19753513 | 19753647 | 19753513 | ID=Msa0673450-mRNA-1:cds;Parent=Msa0673450-mRNA-1 |
| chr4_4 | CDS | 19752024 | 19752224 | 19752024 | ID=Msa0673450-mRNA-1:cds;Parent=Msa0673450-mRNA-1 |
| chr4_4 | three_prime_UTR | 19751949 | 19752023 | 19751949 | ID=Msa0673450-mRNA-1:three_prime_utr;Parent=Msa0673450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
