Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860790 | XP_003617058.2 | 93.796 | 274 | 11 | 3 | 1 | 273 | 1 | 269 | 2.26e-173 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860790 | G7KHG5 | 93.796 | 274 | 11 | 3 | 1 | 273 | 1 | 269 | 1.08e-173 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0860790 | 0.807883 | 4.066879e-50 | -8.615850e-47 |
| Msa0064120 | Msa0860790 | 0.804446 | 2.152178e-49 | -8.615850e-47 |
| Msa0108880 | Msa0860790 | 0.814103 | 1.826407e-51 | -8.615850e-47 |
| Msa0740090 | Msa0860790 | 0.819572 | 1.082510e-52 | -8.615850e-47 |
| Msa0782750 | Msa0860790 | 0.866304 | 3.143666e-65 | -8.615850e-47 |
| Msa0820380 | Msa0860790 | 0.837472 | 5.093757e-57 | -8.615850e-47 |
| Msa0415610 | Msa0860790 | 0.806575 | 7.694753e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860790 | MtrunA17_Chr5g0440311 | 93.796 | 274 | 11 | 3 | 1 | 273 | 1 | 269 | 2.08e-177 | 489 |
| Msa0860790 | MtrunA17_Chr5g0440321 | 36.559 | 279 | 145 | 9 | 1 | 263 | 1 | 263 | 2.48e-40 | 140 |
| Msa0860790 | MtrunA17_Chr5g0440291 | 45.882 | 170 | 82 | 4 | 1 | 163 | 3 | 169 | 2.55e-35 | 127 |
| Msa0860790 | MtrunA17_Chr6g0481571 | 44.000 | 100 | 55 | 1 | 1 | 99 | 1 | 100 | 9.14e-20 | 84.0 |
| Msa0860790 | MtrunA17_Chr7g0253661 | 34.375 | 96 | 63 | 0 | 6 | 101 | 4 | 99 | 1.89e-16 | 75.9 |
| Msa0860790 | MtrunA17_Chr3g0078561 | 36.735 | 98 | 60 | 2 | 4 | 99 | 11 | 108 | 5.41e-14 | 71.2 |
| Msa0860790 | MtrunA17_Chr4g0060201 | 37.234 | 94 | 59 | 0 | 12 | 105 | 21 | 114 | 9.01e-14 | 69.3 |
| Msa0860790 | MtrunA17_Chr8g0356011 | 39.286 | 84 | 50 | 1 | 11 | 93 | 22 | 105 | 2.16e-12 | 66.6 |
| Msa0860790 | MtrunA17_Chr5g0439551 | 40.426 | 94 | 50 | 2 | 63 | 150 | 3 | 96 | 7.51e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860790 | AT2G27140.1 | 33.333 | 186 | 113 | 4 | 6 | 191 | 7 | 181 | 2.09e-21 | 90.1 |
| Msa0860790 | AT5G20970.1 | 42.000 | 100 | 56 | 1 | 10 | 107 | 7 | 106 | 6.19e-17 | 78.6 |
| Msa0860790 | AT1G54400.1 | 33.071 | 127 | 71 | 4 | 1 | 115 | 1 | 125 | 7.93e-12 | 63.2 |
| Msa0860790 | AT5G04890.1 | 35.227 | 88 | 56 | 1 | 13 | 99 | 16 | 103 | 9.51e-11 | 62.0 |
Find 60 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATGATGTTAACCAATT+AGG | 0.187266 | 5_4:+59866446 | Msa0860790:CDS |
| TCTTCATTCCATTCATGATA+TGG | 0.231919 | 5_4:-59865251 | None:intergenic |
| ATAATGATGTTAACCAATTA+GGG | 0.264427 | 5_4:+59866447 | Msa0860790:CDS |
| TGTGGCAACCTTGTTGGTTT+TGG | 0.279792 | 5_4:+59866523 | Msa0860790:CDS |
| CGCCAAAACCAAACCCTAAT+TGG | 0.288282 | 5_4:-59866460 | None:intergenic |
| TGTTCTTGAGGCTTATTAGC+TGG | 0.292615 | 5_4:-59866101 | None:intergenic |
| ACCAATAACTTTCCCTTCTT+AGG | 0.294063 | 5_4:-59866491 | None:intergenic |
| GTCTCACAATATGGAGGAAT+TGG | 0.306295 | 5_4:-59866014 | None:intergenic |
| GCCTAAGAAGGGAAAGTTAT+TGG | 0.308172 | 5_4:+59866490 | Msa0860790:CDS |
| GACAAGGGATTGAGAATATA+TGG | 0.314294 | 5_4:+59865970 | Msa0860790:CDS |
| ACGTCATTGGTCTCACAATA+TGG | 0.322478 | 5_4:-59866023 | None:intergenic |
| AACCAATTAGGGTTTGGTTT+TGG | 0.337138 | 5_4:+59866458 | Msa0860790:CDS |
| GTTCTTGAGGCTTATTAGCT+GGG | 0.354236 | 5_4:-59866100 | None:intergenic |
| TCTTGAGGTGGATTTGTGAT+AGG | 0.359500 | 5_4:-59866128 | None:intergenic |
| TGTGCTTGTGTTGGTACCTT+AGG | 0.364462 | 5_4:-59866182 | None:intergenic |
| GAGAATATATGGCATCGTTT+TGG | 0.366522 | 5_4:+59865981 | Msa0860790:CDS |
| TTAGCTGGGGTGATGAGCTT+TGG | 0.368563 | 5_4:-59866086 | None:intergenic |
| TTAATATAAGTTTGAGATCA+AGG | 0.375563 | 5_4:+59866420 | Msa0860790:CDS |
| GATGTTAACCAATTAGGGTT+TGG | 0.388797 | 5_4:+59866452 | Msa0860790:CDS |
| GTCTTTCACAGTTGATCCTT+AGG | 0.409983 | 5_4:-59865950 | None:intergenic |
| TATTAAAACTGCTGAGGGTA+AGG | 0.412039 | 5_4:+59866346 | Msa0860790:CDS |
| AAACTTGGCACTCACGTCAT+TGG | 0.420410 | 5_4:-59866036 | None:intergenic |
| TTTGGCAAGTATGGATCAAA+AGG | 0.426346 | 5_4:+59865190 | Msa0860790:exon |
| AAATCTTTGTAAACACGATC+AGG | 0.439333 | 5_4:-59865224 | None:intergenic |
| ATTTGCAACCATATCATGAA+TGG | 0.458815 | 5_4:+59865243 | Msa0860790:CDS |
| TAGCACTCCACGTTCAAACT+TGG | 0.470158 | 5_4:-59866051 | None:intergenic |
| TATGATTGTGGCAACCTTGT+TGG | 0.473845 | 5_4:+59866517 | Msa0860790:CDS |
| TGGCGACACAAGGCCTAAGA+AGG | 0.474594 | 5_4:+59866478 | Msa0860790:CDS |
| GTGATAGGTTCTTGTTCTTG+AGG | 0.481402 | 5_4:-59866113 | None:intergenic |
| AGAGTGCAAGTGACTTCAAA+AGG | 0.504816 | 5_4:+59865924 | Msa0860790:CDS |
| TAATATAAGTTTGAGATCAA+GGG | 0.517604 | 5_4:+59866421 | Msa0860790:CDS |
| GGTTCATCACTAAGTTGTTG+TGG | 0.525524 | 5_4:-59866161 | None:intergenic |
| ATCATCTCAAGGAGAATCAA+AGG | 0.545186 | 5_4:+59866586 | Msa0860790:CDS |
| GTTATTGGTGAATATGATTG+TGG | 0.547201 | 5_4:+59866505 | Msa0860790:CDS |
| AGTTGAAAATGATCAAAAGA+AGG | 0.550917 | 5_4:+59866286 | Msa0860790:CDS |
| ATTAAAACTGCTGAGGGTAA+GGG | 0.552764 | 5_4:+59866347 | Msa0860790:CDS |
| TGACTTCAAAAGGTGTCCTA+AGG | 0.553657 | 5_4:+59865934 | Msa0860790:CDS |
| TCAACCACTTGTGCTTGTGT+TGG | 0.564822 | 5_4:-59866191 | None:intergenic |
| TGGTAGCATTAGAACAAGAA+TGG | 0.565784 | 5_4:-59865285 | None:intergenic |
| ACAACTTAGTGATGAACCTA+AGG | 0.567103 | 5_4:+59866166 | Msa0860790:CDS |
| ATTCTTGTTCTAATGCTACC+AGG | 0.571905 | 5_4:+59865287 | Msa0860790:CDS |
| TTCTTGAGGCTTATTAGCTG+GGG | 0.572470 | 5_4:-59866099 | None:intergenic |
| GGCATTGAAGATTCTTGAGG+TGG | 0.576544 | 5_4:-59866140 | None:intergenic |
| GAAGTTATTAAAACTGCTGA+GGG | 0.577721 | 5_4:+59866341 | Msa0860790:CDS |
| AGAAGTTATTAAAACTGCTG+AGG | 0.579114 | 5_4:+59866340 | Msa0860790:CDS |
| GAGGACTAATGATGAGGTGT+TGG | 0.594288 | 5_4:+59866310 | Msa0860790:CDS |
| GGCGACACAAGGCCTAAGAA+GGG | 0.602925 | 5_4:+59866479 | Msa0860790:CDS |
| AAAATGATCAAAAGAAGGTG+AGG | 0.604262 | 5_4:+59866291 | Msa0860790:CDS |
| TGTGGCATTGAAGATTCTTG+AGG | 0.613059 | 5_4:-59866143 | None:intergenic |
| TGACACAAAGATTGAAAACA+AGG | 0.614384 | 5_4:+59866387 | Msa0860790:CDS |
| TGGTCATCATCATCATCTCA+AGG | 0.615793 | 5_4:+59866575 | Msa0860790:CDS |
| CCCAAGCACCAAAACCAACA+AGG | 0.618558 | 5_4:-59866531 | None:intergenic |
| GGTACCAACACAAGCACAAG+TGG | 0.622697 | 5_4:+59866187 | Msa0860790:CDS |
| AGGATCAACTGTGAAAGACA+AGG | 0.634508 | 5_4:+59865954 | Msa0860790:CDS |
| GGATCAACTGTGAAAGACAA+GGG | 0.642161 | 5_4:+59865955 | Msa0860790:CDS |
| GAAGGTGAGGACTAATGATG+AGG | 0.653025 | 5_4:+59866304 | Msa0860790:CDS |
| GAGGGTAAGGGAAAGAGACA+AGG | 0.675091 | 5_4:+59866359 | Msa0860790:CDS |
| TCATTGGTCTCACAATATGG+AGG | 0.693475 | 5_4:-59866020 | None:intergenic |
| AACAAGTACAGGATTCACAA+AGG | 0.702481 | 5_4:+59865893 | Msa0860790:intron |
| GTGAGTGCCAAGTTTGAACG+TGG | 0.731238 | 5_4:+59866044 | Msa0860790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAAAGTATACTTAAAT+TGG | + | chr5_4:59865757-59865776 | Msa0860790:intron | 10.0% |
| !!! | ATTAAAAAGTATACTTAAAT+TGG | + | chr5_4:59865757-59865776 | Msa0860790:intron | 10.0% |
| !! | AAATATTTGACAACAAATTT+CGG | - | chr5_4:59865804-59865823 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTTCATCAATAAT+TGG | - | chr5_4:59866248-59866267 | None:intergenic | 15.0% |
| !! | AAATATTTGACAACAAATTT+CGG | - | chr5_4:59865804-59865823 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTTCATCAATAAT+TGG | - | chr5_4:59866248-59866267 | None:intergenic | 15.0% |
| !!! | GTTGATATTATTTTGTGTTT+TGG | - | chr5_4:59865158-59865177 | None:intergenic | 20.0% |
| !!! | ATCAACAACAAAGAAATTTT+TGG | + | chr5_4:59865172-59865191 | Msa0860790:five_prime_UTR | 20.0% |
| !! | ATATAGAAGAAAATGAGAAA+TGG | - | chr5_4:59865852-59865871 | None:intergenic | 20.0% |
| !!! | TTAATATAAGTTTGAGATCA+AGG | + | chr5_4:59866420-59866439 | Msa0860790:CDS | 20.0% |
| !!! | TAATATAAGTTTGAGATCAA+GGG | + | chr5_4:59866421-59866440 | Msa0860790:CDS | 20.0% |
| !! | ATAATGATGTTAACCAATTA+GGG | + | chr5_4:59866447-59866466 | Msa0860790:CDS | 20.0% |
| !!! | GTTGATATTATTTTGTGTTT+TGG | - | chr5_4:59865158-59865177 | None:intergenic | 20.0% |
| !!! | ATCAACAACAAAGAAATTTT+TGG | + | chr5_4:59865172-59865191 | Msa0860790:five_prime_UTR | 20.0% |
| !! | ATATAGAAGAAAATGAGAAA+TGG | - | chr5_4:59865852-59865871 | None:intergenic | 20.0% |
| !!! | TTAATATAAGTTTGAGATCA+AGG | + | chr5_4:59866420-59866439 | Msa0860790:CDS | 20.0% |
| !!! | TAATATAAGTTTGAGATCAA+GGG | + | chr5_4:59866421-59866440 | Msa0860790:CDS | 20.0% |
| !! | ATAATGATGTTAACCAATTA+GGG | + | chr5_4:59866447-59866466 | Msa0860790:CDS | 20.0% |
| !!! | AAAGAAATTTTTGGCAAGTA+TGG | + | chr5_4:59865181-59865200 | Msa0860790:exon | 25.0% |
| ! | GTACATAATATTAGACATTC+AGG | + | chr5_4:59865434-59865453 | Msa0860790:intron | 25.0% |
| ! | AGAGATATTTCATATGTTGA+GGG | + | chr5_4:59865490-59865509 | Msa0860790:intron | 25.0% |
| ! | AGTTGAAAATGATCAAAAGA+AGG | + | chr5_4:59866286-59866305 | Msa0860790:CDS | 25.0% |
| ! | GATAATGATGTTAACCAATT+AGG | + | chr5_4:59866446-59866465 | Msa0860790:CDS | 25.0% |
| ! | TGTATGTCAAAAATGCATTA+TGG | + | chr5_4:59866555-59866574 | Msa0860790:CDS | 25.0% |
| !!! | AAAGAAATTTTTGGCAAGTA+TGG | + | chr5_4:59865181-59865200 | Msa0860790:exon | 25.0% |
| ! | GTACATAATATTAGACATTC+AGG | + | chr5_4:59865434-59865453 | Msa0860790:intron | 25.0% |
| ! | AGAGATATTTCATATGTTGA+GGG | + | chr5_4:59865490-59865509 | Msa0860790:intron | 25.0% |
| ! | AGTTGAAAATGATCAAAAGA+AGG | + | chr5_4:59866286-59866305 | Msa0860790:CDS | 25.0% |
| ! | GATAATGATGTTAACCAATT+AGG | + | chr5_4:59866446-59866465 | Msa0860790:CDS | 25.0% |
| ! | TGTATGTCAAAAATGCATTA+TGG | + | chr5_4:59866555-59866574 | Msa0860790:CDS | 25.0% |
| AAATCTTTGTAAACACGATC+AGG | - | chr5_4:59865227-59865246 | None:intergenic | 30.0% | |
| ATTTGCAACCATATCATGAA+TGG | + | chr5_4:59865243-59865262 | Msa0860790:CDS | 30.0% | |
| TCTTCATTCCATTCATGATA+TGG | - | chr5_4:59865254-59865273 | None:intergenic | 30.0% | |
| TGCAAAGTTAAACATATACC+TGG | - | chr5_4:59865308-59865327 | None:intergenic | 30.0% | |
| ATAATATTAGACATTCAGGC+CGG | + | chr5_4:59865438-59865457 | Msa0860790:intron | 30.0% | |
| CAGAGATATTTCATATGTTG+AGG | + | chr5_4:59865489-59865508 | Msa0860790:intron | 30.0% | |
| ! | TTTTTGTTCAAAGAGTGATG+CGG | - | chr5_4:59865538-59865557 | None:intergenic | 30.0% |
| AAAATGATCAAAAGAAGGTG+AGG | + | chr5_4:59866291-59866310 | Msa0860790:CDS | 30.0% | |
| AGAAGTTATTAAAACTGCTG+AGG | + | chr5_4:59866340-59866359 | Msa0860790:CDS | 30.0% | |
| GAAGTTATTAAAACTGCTGA+GGG | + | chr5_4:59866341-59866360 | Msa0860790:CDS | 30.0% | |
| TGACACAAAGATTGAAAACA+AGG | + | chr5_4:59866387-59866406 | Msa0860790:CDS | 30.0% | |
| GTTATTGGTGAATATGATTG+TGG | + | chr5_4:59866505-59866524 | Msa0860790:CDS | 30.0% | |
| ! | TATAGGCTTAAATGCGTTTT+TGG | + | chr5_4:59866713-59866732 | Msa0860790:three_prime_UTR | 30.0% |
| AAATCTTTGTAAACACGATC+AGG | - | chr5_4:59865227-59865246 | None:intergenic | 30.0% | |
| ATTTGCAACCATATCATGAA+TGG | + | chr5_4:59865243-59865262 | Msa0860790:CDS | 30.0% | |
| TCTTCATTCCATTCATGATA+TGG | - | chr5_4:59865254-59865273 | None:intergenic | 30.0% | |
| TGCAAAGTTAAACATATACC+TGG | - | chr5_4:59865308-59865327 | None:intergenic | 30.0% | |
| ATAATATTAGACATTCAGGC+CGG | + | chr5_4:59865438-59865457 | Msa0860790:intron | 30.0% | |
| CAGAGATATTTCATATGTTG+AGG | + | chr5_4:59865489-59865508 | Msa0860790:intron | 30.0% | |
| ! | TTTTTGTTCAAAGAGTGATG+CGG | - | chr5_4:59865538-59865557 | None:intergenic | 30.0% |
| AAAATGATCAAAAGAAGGTG+AGG | + | chr5_4:59866291-59866310 | Msa0860790:CDS | 30.0% | |
| AGAAGTTATTAAAACTGCTG+AGG | + | chr5_4:59866340-59866359 | Msa0860790:CDS | 30.0% | |
| GAAGTTATTAAAACTGCTGA+GGG | + | chr5_4:59866341-59866360 | Msa0860790:CDS | 30.0% | |
| TGACACAAAGATTGAAAACA+AGG | + | chr5_4:59866387-59866406 | Msa0860790:CDS | 30.0% | |
| GTTATTGGTGAATATGATTG+TGG | + | chr5_4:59866505-59866524 | Msa0860790:CDS | 30.0% | |
| TTTGGCAAGTATGGATCAAA+AGG | + | chr5_4:59865190-59865209 | Msa0860790:exon | 35.0% | |
| TGGTAGCATTAGAACAAGAA+TGG | - | chr5_4:59865288-59865307 | None:intergenic | 35.0% | |
| ATTCTTGTTCTAATGCTACC+AGG | + | chr5_4:59865287-59865306 | Msa0860790:CDS | 35.0% | |
| TTTAACGCGATTCAAAATCG+TGG | + | chr5_4:59865644-59865663 | Msa0860790:intron | 35.0% | |
| ! | AAATCGTGGTTAGTCATGTT+TGG | + | chr5_4:59865658-59865677 | Msa0860790:intron | 35.0% |
| ! | TGGTTAGTCATGTTTGGTAT+CGG | + | chr5_4:59865664-59865683 | Msa0860790:intron | 35.0% |
| ACTTCTATTCCAACAAGTAC+AGG | + | chr5_4:59865882-59865901 | Msa0860790:intron | 35.0% | |
| TTTGTGAATCCTGTACTTGT+TGG | - | chr5_4:59865894-59865913 | None:intergenic | 35.0% | |
| AACAAGTACAGGATTCACAA+AGG | + | chr5_4:59865893-59865912 | Msa0860790:intron | 35.0% | |
| GACAAGGGATTGAGAATATA+TGG | + | chr5_4:59865970-59865989 | Msa0860790:CDS | 35.0% | |
| ! | GAGAATATATGGCATCGTTT+TGG | + | chr5_4:59865981-59866000 | Msa0860790:CDS | 35.0% |
| ACAACTTAGTGATGAACCTA+AGG | + | chr5_4:59866166-59866185 | Msa0860790:CDS | 35.0% | |
| TATTAAAACTGCTGAGGGTA+AGG | + | chr5_4:59866346-59866365 | Msa0860790:CDS | 35.0% | |
| ATTAAAACTGCTGAGGGTAA+GGG | + | chr5_4:59866347-59866366 | Msa0860790:CDS | 35.0% | |
| GATGTTAACCAATTAGGGTT+TGG | + | chr5_4:59866452-59866471 | Msa0860790:CDS | 35.0% | |
| !! | AACCAATTAGGGTTTGGTTT+TGG | + | chr5_4:59866458-59866477 | Msa0860790:CDS | 35.0% |
| ACCAATAACTTTCCCTTCTT+AGG | - | chr5_4:59866494-59866513 | None:intergenic | 35.0% | |
| ATCATCTCAAGGAGAATCAA+AGG | + | chr5_4:59866586-59866605 | Msa0860790:CDS | 35.0% | |
| TTTGGCAAGTATGGATCAAA+AGG | + | chr5_4:59865190-59865209 | Msa0860790:exon | 35.0% | |
| TGGTAGCATTAGAACAAGAA+TGG | - | chr5_4:59865288-59865307 | None:intergenic | 35.0% | |
| ATTCTTGTTCTAATGCTACC+AGG | + | chr5_4:59865287-59865306 | Msa0860790:CDS | 35.0% | |
| TTTAACGCGATTCAAAATCG+TGG | + | chr5_4:59865644-59865663 | Msa0860790:intron | 35.0% | |
| ! | AAATCGTGGTTAGTCATGTT+TGG | + | chr5_4:59865658-59865677 | Msa0860790:intron | 35.0% |
| ! | TGGTTAGTCATGTTTGGTAT+CGG | + | chr5_4:59865664-59865683 | Msa0860790:intron | 35.0% |
| ACTTCTATTCCAACAAGTAC+AGG | + | chr5_4:59865882-59865901 | Msa0860790:intron | 35.0% | |
| TTTGTGAATCCTGTACTTGT+TGG | - | chr5_4:59865894-59865913 | None:intergenic | 35.0% | |
| AACAAGTACAGGATTCACAA+AGG | + | chr5_4:59865893-59865912 | Msa0860790:intron | 35.0% | |
| GACAAGGGATTGAGAATATA+TGG | + | chr5_4:59865970-59865989 | Msa0860790:CDS | 35.0% | |
| ! | GAGAATATATGGCATCGTTT+TGG | + | chr5_4:59865981-59866000 | Msa0860790:CDS | 35.0% |
| ACAACTTAGTGATGAACCTA+AGG | + | chr5_4:59866166-59866185 | Msa0860790:CDS | 35.0% | |
| TATTAAAACTGCTGAGGGTA+AGG | + | chr5_4:59866346-59866365 | Msa0860790:CDS | 35.0% | |
| ATTAAAACTGCTGAGGGTAA+GGG | + | chr5_4:59866347-59866366 | Msa0860790:CDS | 35.0% | |
| GATGTTAACCAATTAGGGTT+TGG | + | chr5_4:59866452-59866471 | Msa0860790:CDS | 35.0% | |
| !! | AACCAATTAGGGTTTGGTTT+TGG | + | chr5_4:59866458-59866477 | Msa0860790:CDS | 35.0% |
| ACCAATAACTTTCCCTTCTT+AGG | - | chr5_4:59866494-59866513 | None:intergenic | 35.0% | |
| ATCATCTCAAGGAGAATCAA+AGG | + | chr5_4:59866586-59866605 | Msa0860790:CDS | 35.0% | |
| ACCATGTGAGTTGTACTTAC+CGG | - | chr5_4:59865460-59865479 | None:intergenic | 40.0% | |
| TTTCATATGTTGAGGGCTTG+AGG | + | chr5_4:59865497-59865516 | Msa0860790:intron | 40.0% | |
| AGAGTGCAAGTGACTTCAAA+AGG | + | chr5_4:59865924-59865943 | Msa0860790:CDS | 40.0% | |
| !! | TGACTTCAAAAGGTGTCCTA+AGG | + | chr5_4:59865934-59865953 | Msa0860790:CDS | 40.0% |
| GTCTTTCACAGTTGATCCTT+AGG | - | chr5_4:59865953-59865972 | None:intergenic | 40.0% | |
| AGGATCAACTGTGAAAGACA+AGG | + | chr5_4:59865954-59865973 | Msa0860790:CDS | 40.0% | |
| GGATCAACTGTGAAAGACAA+GGG | + | chr5_4:59865955-59865974 | Msa0860790:CDS | 40.0% | |
| GTCTCACAATATGGAGGAAT+TGG | - | chr5_4:59866017-59866036 | None:intergenic | 40.0% | |
| ! | TCATTGGTCTCACAATATGG+AGG | - | chr5_4:59866023-59866042 | None:intergenic | 40.0% |
| ! | ACGTCATTGGTCTCACAATA+TGG | - | chr5_4:59866026-59866045 | None:intergenic | 40.0% |
| TTCTTGAGGCTTATTAGCTG+GGG | - | chr5_4:59866102-59866121 | None:intergenic | 40.0% | |
| GTTCTTGAGGCTTATTAGCT+GGG | - | chr5_4:59866103-59866122 | None:intergenic | 40.0% | |
| TGTTCTTGAGGCTTATTAGC+TGG | - | chr5_4:59866104-59866123 | None:intergenic | 40.0% | |
| GTGATAGGTTCTTGTTCTTG+AGG | - | chr5_4:59866116-59866135 | None:intergenic | 40.0% | |
| ! | TCTTGAGGTGGATTTGTGAT+AGG | - | chr5_4:59866131-59866150 | None:intergenic | 40.0% |
| ! | TGTGGCATTGAAGATTCTTG+AGG | - | chr5_4:59866146-59866165 | None:intergenic | 40.0% |
| GGTTCATCACTAAGTTGTTG+TGG | - | chr5_4:59866164-59866183 | None:intergenic | 40.0% | |
| GCCTAAGAAGGGAAAGTTAT+TGG | + | chr5_4:59866490-59866509 | Msa0860790:CDS | 40.0% | |
| TATGATTGTGGCAACCTTGT+TGG | + | chr5_4:59866517-59866536 | Msa0860790:CDS | 40.0% | |
| TGGTCATCATCATCATCTCA+AGG | + | chr5_4:59866575-59866594 | Msa0860790:CDS | 40.0% | |
| ACCATGTGAGTTGTACTTAC+CGG | - | chr5_4:59865460-59865479 | None:intergenic | 40.0% | |
| TTTCATATGTTGAGGGCTTG+AGG | + | chr5_4:59865497-59865516 | Msa0860790:intron | 40.0% | |
| AGAGTGCAAGTGACTTCAAA+AGG | + | chr5_4:59865924-59865943 | Msa0860790:CDS | 40.0% | |
| !! | TGACTTCAAAAGGTGTCCTA+AGG | + | chr5_4:59865934-59865953 | Msa0860790:CDS | 40.0% |
| GTCTTTCACAGTTGATCCTT+AGG | - | chr5_4:59865953-59865972 | None:intergenic | 40.0% | |
| AGGATCAACTGTGAAAGACA+AGG | + | chr5_4:59865954-59865973 | Msa0860790:CDS | 40.0% | |
| GGATCAACTGTGAAAGACAA+GGG | + | chr5_4:59865955-59865974 | Msa0860790:CDS | 40.0% | |
| GTCTCACAATATGGAGGAAT+TGG | - | chr5_4:59866017-59866036 | None:intergenic | 40.0% | |
| ! | TCATTGGTCTCACAATATGG+AGG | - | chr5_4:59866023-59866042 | None:intergenic | 40.0% |
| ! | ACGTCATTGGTCTCACAATA+TGG | - | chr5_4:59866026-59866045 | None:intergenic | 40.0% |
| TTCTTGAGGCTTATTAGCTG+GGG | - | chr5_4:59866102-59866121 | None:intergenic | 40.0% | |
| GTTCTTGAGGCTTATTAGCT+GGG | - | chr5_4:59866103-59866122 | None:intergenic | 40.0% | |
| TGTTCTTGAGGCTTATTAGC+TGG | - | chr5_4:59866104-59866123 | None:intergenic | 40.0% | |
| GTGATAGGTTCTTGTTCTTG+AGG | - | chr5_4:59866116-59866135 | None:intergenic | 40.0% | |
| ! | TCTTGAGGTGGATTTGTGAT+AGG | - | chr5_4:59866131-59866150 | None:intergenic | 40.0% |
| ! | TGTGGCATTGAAGATTCTTG+AGG | - | chr5_4:59866146-59866165 | None:intergenic | 40.0% |
| GGTTCATCACTAAGTTGTTG+TGG | - | chr5_4:59866164-59866183 | None:intergenic | 40.0% | |
| GCCTAAGAAGGGAAAGTTAT+TGG | + | chr5_4:59866490-59866509 | Msa0860790:CDS | 40.0% | |
| TATGATTGTGGCAACCTTGT+TGG | + | chr5_4:59866517-59866536 | Msa0860790:CDS | 40.0% | |
| TGGTCATCATCATCATCTCA+AGG | + | chr5_4:59866575-59866594 | Msa0860790:CDS | 40.0% | |
| AAACTTGGCACTCACGTCAT+TGG | - | chr5_4:59866039-59866058 | None:intergenic | 45.0% | |
| TAGCACTCCACGTTCAAACT+TGG | - | chr5_4:59866054-59866073 | None:intergenic | 45.0% | |
| ! | GGCATTGAAGATTCTTGAGG+TGG | - | chr5_4:59866143-59866162 | None:intergenic | 45.0% |
| ! | TGTGCTTGTGTTGGTACCTT+AGG | - | chr5_4:59866185-59866204 | None:intergenic | 45.0% |
| TCAACCACTTGTGCTTGTGT+TGG | - | chr5_4:59866194-59866213 | None:intergenic | 45.0% | |
| GAAGGTGAGGACTAATGATG+AGG | + | chr5_4:59866304-59866323 | Msa0860790:CDS | 45.0% | |
| GAGGACTAATGATGAGGTGT+TGG | + | chr5_4:59866310-59866329 | Msa0860790:CDS | 45.0% | |
| CGCCAAAACCAAACCCTAAT+TGG | - | chr5_4:59866463-59866482 | None:intergenic | 45.0% | |
| !!! | TGTGGCAACCTTGTTGGTTT+TGG | + | chr5_4:59866523-59866542 | Msa0860790:CDS | 45.0% |
| !!! | ACCTTGTTGGTTTTGGTGCT+TGG | + | chr5_4:59866530-59866549 | Msa0860790:CDS | 45.0% |
| !!! | CCTTGTTGGTTTTGGTGCTT+GGG | + | chr5_4:59866531-59866550 | Msa0860790:CDS | 45.0% |
| !!! | CTTGTTGGTTTTGGTGCTTG+GGG | + | chr5_4:59866532-59866551 | Msa0860790:CDS | 45.0% |
| AAACTTGGCACTCACGTCAT+TGG | - | chr5_4:59866039-59866058 | None:intergenic | 45.0% | |
| TAGCACTCCACGTTCAAACT+TGG | - | chr5_4:59866054-59866073 | None:intergenic | 45.0% | |
| ! | GGCATTGAAGATTCTTGAGG+TGG | - | chr5_4:59866143-59866162 | None:intergenic | 45.0% |
| ! | TGTGCTTGTGTTGGTACCTT+AGG | - | chr5_4:59866185-59866204 | None:intergenic | 45.0% |
| TCAACCACTTGTGCTTGTGT+TGG | - | chr5_4:59866194-59866213 | None:intergenic | 45.0% | |
| GAAGGTGAGGACTAATGATG+AGG | + | chr5_4:59866304-59866323 | Msa0860790:CDS | 45.0% | |
| GAGGACTAATGATGAGGTGT+TGG | + | chr5_4:59866310-59866329 | Msa0860790:CDS | 45.0% | |
| CGCCAAAACCAAACCCTAAT+TGG | - | chr5_4:59866463-59866482 | None:intergenic | 45.0% | |
| !!! | TGTGGCAACCTTGTTGGTTT+TGG | + | chr5_4:59866523-59866542 | Msa0860790:CDS | 45.0% |
| !!! | ACCTTGTTGGTTTTGGTGCT+TGG | + | chr5_4:59866530-59866549 | Msa0860790:CDS | 45.0% |
| !!! | CCTTGTTGGTTTTGGTGCTT+GGG | + | chr5_4:59866531-59866550 | Msa0860790:CDS | 45.0% |
| !!! | CTTGTTGGTTTTGGTGCTTG+GGG | + | chr5_4:59866532-59866551 | Msa0860790:CDS | 45.0% |
| !!! | ATTATAGATATATATTTTAT+AGG | + | chr5_4:59866696-59866715 | Msa0860790:three_prime_UTR | 5.0% |
| !!! | ATTATAGATATATATTTTAT+AGG | + | chr5_4:59866696-59866715 | Msa0860790:three_prime_UTR | 5.0% |
| GCCGGTAAGTACAACTCACA+TGG | + | chr5_4:59865456-59865475 | Msa0860790:intron | 50.0% | |
| GTGAGTGCCAAGTTTGAACG+TGG | + | chr5_4:59866044-59866063 | Msa0860790:CDS | 50.0% | |
| TTAGCTGGGGTGATGAGCTT+TGG | - | chr5_4:59866089-59866108 | None:intergenic | 50.0% | |
| GGTACCAACACAAGCACAAG+TGG | + | chr5_4:59866187-59866206 | Msa0860790:CDS | 50.0% | |
| GAGGGTAAGGGAAAGAGACA+AGG | + | chr5_4:59866359-59866378 | Msa0860790:CDS | 50.0% | |
| !!! | GGTTTGGTTTTGGCGACACA+AGG | + | chr5_4:59866468-59866487 | Msa0860790:CDS | 50.0% |
| CCCAAGCACCAAAACCAACA+AGG | - | chr5_4:59866534-59866553 | None:intergenic | 50.0% | |
| GCCGGTAAGTACAACTCACA+TGG | + | chr5_4:59865456-59865475 | Msa0860790:intron | 50.0% | |
| GTGAGTGCCAAGTTTGAACG+TGG | + | chr5_4:59866044-59866063 | Msa0860790:CDS | 50.0% | |
| TTAGCTGGGGTGATGAGCTT+TGG | - | chr5_4:59866089-59866108 | None:intergenic | 50.0% | |
| GGTACCAACACAAGCACAAG+TGG | + | chr5_4:59866187-59866206 | Msa0860790:CDS | 50.0% | |
| GAGGGTAAGGGAAAGAGACA+AGG | + | chr5_4:59866359-59866378 | Msa0860790:CDS | 50.0% | |
| !!! | GGTTTGGTTTTGGCGACACA+AGG | + | chr5_4:59866468-59866487 | Msa0860790:CDS | 50.0% |
| CCCAAGCACCAAAACCAACA+AGG | - | chr5_4:59866534-59866553 | None:intergenic | 50.0% | |
| TATGTTGAGGGCTTGAGGCG+CGG | + | chr5_4:59865502-59865521 | Msa0860790:intron | 55.0% | |
| TGGCGACACAAGGCCTAAGA+AGG | + | chr5_4:59866478-59866497 | Msa0860790:CDS | 55.0% | |
| GGCGACACAAGGCCTAAGAA+GGG | + | chr5_4:59866479-59866498 | Msa0860790:CDS | 55.0% | |
| TATGTTGAGGGCTTGAGGCG+CGG | + | chr5_4:59865502-59865521 | Msa0860790:intron | 55.0% | |
| TGGCGACACAAGGCCTAAGA+AGG | + | chr5_4:59866478-59866497 | Msa0860790:CDS | 55.0% | |
| GGCGACACAAGGCCTAAGAA+GGG | + | chr5_4:59866479-59866498 | Msa0860790:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 59865148 | 59866734 | 59865148 | ID=Msa0860790;Name=Msa0860790 |
| chr5_4 | mRNA | 59865148 | 59866734 | 59865148 | ID=Msa0860790-mRNA-1;Parent=Msa0860790;Name=Msa0860790-mRNA-1;_AED=0.28;_eAED=0.28;_QI=52|1|1|1|1|1|2|118|273 |
| chr5_4 | exon | 59865148 | 59865308 | 59865148 | ID=Msa0860790-mRNA-1:exon:18395;Parent=Msa0860790-mRNA-1 |
| chr5_4 | exon | 59865904 | 59866734 | 59865904 | ID=Msa0860790-mRNA-1:exon:18396;Parent=Msa0860790-mRNA-1 |
| chr5_4 | five_prime_UTR | 59865148 | 59865199 | 59865148 | ID=Msa0860790-mRNA-1:five_prime_utr;Parent=Msa0860790-mRNA-1 |
| chr5_4 | CDS | 59865200 | 59865308 | 59865200 | ID=Msa0860790-mRNA-1:cds;Parent=Msa0860790-mRNA-1 |
| chr5_4 | CDS | 59865904 | 59866616 | 59865904 | ID=Msa0860790-mRNA-1:cds;Parent=Msa0860790-mRNA-1 |
| chr5_4 | three_prime_UTR | 59866617 | 59866734 | 59866617 | ID=Msa0860790-mRNA-1:three_prime_utr;Parent=Msa0860790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
