Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820380 | XP_003617058.2 | 95.290 | 276 | 6 | 2 | 1 | 276 | 1 | 269 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820380 | G7KHG5 | 95.290 | 276 | 6 | 2 | 1 | 276 | 1 | 269 | 0.0 | 527 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0820380 | 0.891976 | 2.427348e-74 | -8.615850e-47 |
| Msa0029960 | Msa0820380 | 0.809615 | 1.733572e-50 | -8.615850e-47 |
| Msa0029970 | Msa0820380 | 0.820256 | 7.551287e-53 | -8.615850e-47 |
| Msa0029990 | Msa0820380 | 0.824908 | 6.254151e-54 | -8.615850e-47 |
| Msa0064120 | Msa0820380 | 0.886409 | 3.506787e-72 | -8.615850e-47 |
| Msa0071840 | Msa0820380 | 0.825723 | 4.012979e-54 | -8.615850e-47 |
| Msa0071850 | Msa0820380 | 0.828875 | 7.050227e-55 | -8.615850e-47 |
| Msa0071860 | Msa0820380 | 0.812809 | 3.516746e-51 | -8.615850e-47 |
| Msa0108880 | Msa0820380 | 0.868382 | 6.804492e-66 | -8.615850e-47 |
| Msa0736440 | Msa0820380 | 0.836996 | 6.745080e-57 | -8.615850e-47 |
| Msa0740090 | Msa0820380 | 0.968046 | 4.009623e-128 | -8.615850e-47 |
| Msa0782750 | Msa0820380 | 0.976150 | 2.807190e-141 | -8.615850e-47 |
| Msa0800140 | Msa0820380 | 0.805661 | 1.198545e-49 | -8.615850e-47 |
| Msa0800200 | Msa0820380 | 0.807783 | 4.271089e-50 | -8.615850e-47 |
| Msa0820380 | Msa0849650 | 0.825512 | 4.503228e-54 | -8.615850e-47 |
| Msa0820380 | Msa0853590 | 0.802855 | 4.601658e-49 | -8.615850e-47 |
| Msa0820380 | Msa0860790 | 0.837472 | 5.093757e-57 | -8.615850e-47 |
| Msa0820380 | Msa1014320 | 0.863332 | 2.685666e-64 | -8.615850e-47 |
| Msa0820380 | Msa1021780 | 0.815119 | 1.088455e-51 | -8.615850e-47 |
| Msa0820380 | Msa1055310 | 0.853759 | 1.932369e-61 | -8.615850e-47 |
| Msa0820380 | Msa1125250 | 0.813975 | 1.949834e-51 | -8.615850e-47 |
| Msa0820380 | Msa1257340 | 0.838644 | 2.544097e-57 | -8.615850e-47 |
| Msa0820380 | Msa1262860 | 0.807176 | 5.742781e-50 | -8.615850e-47 |
| Msa0820380 | Msa1290380 | 0.818123 | 2.309573e-52 | -8.615850e-47 |
| Msa0820380 | Msa1290440 | 0.816087 | 6.625129e-52 | -8.615850e-47 |
| Msa0820380 | Msa1356350 | 0.821296 | 4.354443e-53 | -8.615850e-47 |
| Msa0820380 | Msa1360930 | 0.800304 | 1.534967e-48 | -8.615850e-47 |
| Msa0820380 | Msa1404480 | 0.811669 | 6.236302e-51 | -8.615850e-47 |
| Msa0820380 | Msa1429860 | 0.852347 | 4.899583e-61 | -8.615850e-47 |
| Msa0820380 | Msa1435630 | 0.845338 | 4.323044e-59 | -8.615850e-47 |
| Msa0125200 | Msa0820380 | 0.815948 | 7.114645e-52 | -8.615850e-47 |
| Msa0137210 | Msa0820380 | 0.810056 | 1.393583e-50 | -8.615850e-47 |
| Msa0155180 | Msa0820380 | 0.877707 | 5.061767e-69 | -8.615850e-47 |
| Msa0182400 | Msa0820380 | 0.826409 | 2.755950e-54 | -8.615850e-47 |
| Msa0205570 | Msa0820380 | 0.807029 | 6.170159e-50 | -8.615850e-47 |
| Msa0382530 | Msa0820380 | 0.844750 | 6.231590e-59 | -8.615850e-47 |
| Msa0415610 | Msa0820380 | 0.811892 | 5.576664e-51 | -8.615850e-47 |
| Msa0432320 | Msa0820380 | 0.834713 | 2.555699e-56 | -8.615850e-47 |
| Msa0451170 | Msa0820380 | 0.817957 | 2.518073e-52 | -8.615850e-47 |
| Msa0460550 | Msa0820380 | 0.812376 | 4.374179e-51 | -8.615850e-47 |
| Msa0460630 | Msa0820380 | 0.818367 | 2.034468e-52 | -8.615850e-47 |
| Msa0342840 | Msa0820380 | 0.813350 | 2.676285e-51 | -8.615850e-47 |
| Msa0359010 | Msa0820380 | 0.825497 | 4.538633e-54 | -8.615850e-47 |
| Msa0498610 | Msa0820380 | 0.818549 | 1.850051e-52 | -8.615850e-47 |
| Msa0525210 | Msa0820380 | 0.847228 | 1.320346e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820380 | MtrunA17_Chr5g0440311 | 95.290 | 276 | 6 | 2 | 1 | 276 | 1 | 269 | 0.0 | 527 |
| Msa0820380 | MtrunA17_Chr5g0440321 | 36.170 | 282 | 143 | 9 | 1 | 264 | 1 | 263 | 2.63e-39 | 138 |
| Msa0820380 | MtrunA17_Chr5g0440291 | 45.029 | 171 | 83 | 4 | 1 | 164 | 3 | 169 | 9.85e-35 | 125 |
| Msa0820380 | MtrunA17_Chr6g0481571 | 43.158 | 95 | 54 | 0 | 5 | 99 | 6 | 100 | 4.32e-19 | 82.0 |
| Msa0820380 | MtrunA17_Chr7g0253661 | 35.417 | 96 | 62 | 0 | 6 | 101 | 4 | 99 | 3.50e-17 | 77.8 |
| Msa0820380 | MtrunA17_Chr4g0060201 | 37.234 | 94 | 59 | 0 | 12 | 105 | 21 | 114 | 1.06e-13 | 69.3 |
| Msa0820380 | MtrunA17_Chr3g0078561 | 36.735 | 98 | 60 | 2 | 4 | 99 | 11 | 108 | 1.16e-13 | 70.5 |
| Msa0820380 | MtrunA17_Chr8g0356011 | 39.286 | 84 | 50 | 1 | 11 | 93 | 22 | 105 | 7.39e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820380 | AT2G27140.1 | 29.956 | 227 | 147 | 4 | 6 | 232 | 7 | 221 | 1.96e-20 | 87.8 |
| Msa0820380 | AT5G20970.1 | 42.000 | 100 | 56 | 1 | 10 | 107 | 7 | 106 | 1.88e-16 | 77.4 |
Find 59 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATTCCATTCATGATA+TGG | 0.231919 | 5_3:-57673099 | None:intergenic |
| CACCAAAACCAAAACCTAAT+TGG | 0.259644 | 5_3:-57674308 | None:intergenic |
| GATAAGGATGTTAACCAATT+AGG | 0.278710 | 5_3:+57674294 | Msa0820380:CDS |
| TGTGGCATCCTTGTTGGTTT+TGG | 0.279792 | 5_3:+57674371 | Msa0820380:CDS |
| ACCAATAACTTCCCCTTCTT+AGG | 0.291447 | 5_3:-57674339 | None:intergenic |
| TTTGTGGCATTGAAGATTCT+TGG | 0.306163 | 5_3:-57673990 | None:intergenic |
| GTCTCACAATATGGAGGAAT+TGG | 0.306295 | 5_3:-57673859 | None:intergenic |
| GACAAGGGATTGAGAATATA+TGG | 0.314294 | 5_3:+57673815 | Msa0820380:CDS |
| ACGTCATTGGTCTCACAATA+TGG | 0.322478 | 5_3:-57673868 | None:intergenic |
| GCCTAAGAAGGGGAAGTTAT+TGG | 0.330941 | 5_3:+57674338 | Msa0820380:CDS |
| TTGTGGCATTGAAGATTCTT+GGG | 0.338711 | 5_3:-57673989 | None:intergenic |
| TGTGCTTGTGTTGGTGCCTT+AGG | 0.347331 | 5_3:-57674027 | None:intergenic |
| GATGTTAACCAATTAGGTTT+TGG | 0.362529 | 5_3:+57674300 | Msa0820380:CDS |
| GAGAATATATGGCATCGTTT+TGG | 0.366522 | 5_3:+57673826 | Msa0820380:CDS |
| TTAGCTGGAGTGATTAGCTT+TGG | 0.374539 | 5_3:-57673931 | None:intergenic |
| TCTTGGGGTGGATTTGTGAT+AGG | 0.374810 | 5_3:-57673973 | None:intergenic |
| TGTTCTTGAGGCTTATTAGC+TGG | 0.378209 | 5_3:-57673946 | None:intergenic |
| GTCTTTCACAATTGATCCTT+AGG | 0.382931 | 5_3:-57673795 | None:intergenic |
| TATTAAAACTGCTGAGGGTA+AGG | 0.412039 | 5_3:+57674194 | Msa0820380:CDS |
| TTTGGCAAGTATGGATCAAA+AGG | 0.417877 | 5_3:+57673038 | Msa0820380:exon |
| TATGATTGTGGCATCCTTGT+TGG | 0.435298 | 5_3:+57674365 | Msa0820380:CDS |
| TTTATAATACATGTGTTAAG+AGG | 0.436463 | 5_3:-57674617 | None:intergenic |
| AAATCTTTGTAAACACGATC+AGG | 0.439333 | 5_3:-57673072 | None:intergenic |
| TTTGAGATCAAAGGATGATA+AGG | 0.439999 | 5_3:+57674278 | Msa0820380:CDS |
| ATTTGCAACCATATCATGAA+TGG | 0.458815 | 5_3:+57673091 | Msa0820380:CDS |
| TAGCACTCCACGCTCAAACT+TGG | 0.459332 | 5_3:-57673896 | None:intergenic |
| AAACTTGGCACTCACGTCAT+TGG | 0.464817 | 5_3:-57673881 | None:intergenic |
| TGGTGACATAAGGCCTAAGA+AGG | 0.480818 | 5_3:+57674326 | Msa0820380:CDS |
| GTGATAGGTTCTTGTTCTTG+AGG | 0.481402 | 5_3:-57673958 | None:intergenic |
| TAATATAAGTTTGAGATCAA+AGG | 0.489862 | 5_3:+57674269 | Msa0820380:CDS |
| AGAGTGCAAGTGACTTCAAA+AGG | 0.504816 | 5_3:+57673769 | Msa0820380:CDS |
| TCAACCACTTGTGCTTGTGT+TGG | 0.527170 | 5_3:-57674036 | None:intergenic |
| GAGGACTAATGATGAGTTGT+TGG | 0.528622 | 5_3:+57674158 | Msa0820380:CDS |
| GGCATTGAAGATTCTTGGGG+TGG | 0.533531 | 5_3:-57673985 | None:intergenic |
| AAAACTTAGTGATGAACCTA+AGG | 0.543043 | 5_3:+57674011 | Msa0820380:CDS |
| AGTTGAAAATGATCAAAAGA+AGG | 0.550917 | 5_3:+57674134 | Msa0820380:CDS |
| ATTAAAACTGCTGAGGGTAA+GGG | 0.552764 | 5_3:+57674195 | Msa0820380:CDS |
| TGACTTCAAAAGGTGTCCTA+AGG | 0.553657 | 5_3:+57673779 | Msa0820380:CDS |
| GTTATTGGTGAATATGATTG+TGG | 0.556259 | 5_3:+57674353 | Msa0820380:CDS |
| ATCATCTCAAGGAGAATCAA+AGG | 0.557564 | 5_3:+57674440 | Msa0820380:CDS |
| GAAGTTATTAAAACTGCTGA+GGG | 0.577721 | 5_3:+57674189 | Msa0820380:CDS |
| AGAAGTTATTAAAACTGCTG+AGG | 0.579114 | 5_3:+57674188 | Msa0820380:CDS |
| CCCAAGCACCAAAACCAACA+AGG | 0.596289 | 5_3:-57674379 | None:intergenic |
| GGCACCAACACAAGCACAAG+TGG | 0.599712 | 5_3:+57674032 | Msa0820380:CDS |
| AAAATGATCAAAAGAAGGTG+AGG | 0.604262 | 5_3:+57674139 | Msa0820380:CDS |
| TGACACAAAGATTGAAAACA+AGG | 0.614384 | 5_3:+57674235 | Msa0820380:CDS |
| ACTCTTGTTCTAATGCTACC+AGG | 0.617254 | 5_3:+57673135 | Msa0820380:CDS |
| TGTGGCATTGAAGATTCTTG+GGG | 0.617922 | 5_3:-57673988 | None:intergenic |
| AGGATCAATTGTGAAAGACA+AGG | 0.627967 | 5_3:+57673799 | Msa0820380:CDS |
| GGATCAATTGTGAAAGACAA+GGG | 0.637612 | 5_3:+57673800 | Msa0820380:CDS |
| GTGACATAAGGCCTAAGAAG+GGG | 0.654964 | 5_3:+57674328 | Msa0820380:CDS |
| GGTGACATAAGGCCTAAGAA+GGG | 0.663272 | 5_3:+57674327 | Msa0820380:CDS |
| TGGTAGCATTAGAACAAGAG+TGG | 0.670251 | 5_3:-57673133 | None:intergenic |
| GAGGGTAAGGGAAAGAGACA+AGG | 0.675091 | 5_3:+57674207 | Msa0820380:CDS |
| ACAAGTATTAAATATAACAC+CGG | 0.680730 | 5_3:-57674591 | None:intergenic |
| GTGAGTGCCAAGTTTGAGCG+TGG | 0.681150 | 5_3:+57673889 | Msa0820380:CDS |
| AACAAGAACAGGATTCACAA+AGG | 0.687428 | 5_3:+57673738 | Msa0820380:intron |
| TCATTGGTCTCACAATATGG+AGG | 0.693475 | 5_3:-57673865 | None:intergenic |
| GAAGTTTGATCAAATCACAC+CGG | 0.707478 | 5_3:+57674572 | Msa0820380:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTTTTCATCAATAAT+TGG | - | chr5_3:57674096-57674115 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTTCATCAATAAT+TGG | - | chr5_3:57674096-57674115 | None:intergenic | 15.0% |
| !!! | GTTGATATTATTTTGTGTTT+TGG | - | chr5_3:57673006-57673025 | None:intergenic | 20.0% |
| !!! | ATCAACAACAAAGAAATTTT+TGG | + | chr5_3:57673020-57673039 | Msa0820380:five_prime_UTR | 20.0% |
| !! | AAATATTTGACAACACATTT+CGG | - | chr5_3:57673648-57673667 | None:intergenic | 20.0% |
| !! | ATATAGAAGAAAATGAGAAA+TGG | - | chr5_3:57673696-57673715 | None:intergenic | 20.0% |
| !!! | ATAATTGGTTCTTTTTTCTT+TGG | - | chr5_3:57674081-57674100 | None:intergenic | 20.0% |
| !!! | TAATATAAGTTTGAGATCAA+AGG | + | chr5_3:57674269-57674288 | Msa0820380:CDS | 20.0% |
| !! | ACAAGTATTAAATATAACAC+CGG | - | chr5_3:57674594-57674613 | None:intergenic | 20.0% |
| !! | TTTATAATACATGTGTTAAG+AGG | - | chr5_3:57674620-57674639 | None:intergenic | 20.0% |
| !!! | GTTGATATTATTTTGTGTTT+TGG | - | chr5_3:57673006-57673025 | None:intergenic | 20.0% |
| !!! | ATCAACAACAAAGAAATTTT+TGG | + | chr5_3:57673020-57673039 | Msa0820380:five_prime_UTR | 20.0% |
| !! | AAATATTTGACAACACATTT+CGG | - | chr5_3:57673648-57673667 | None:intergenic | 20.0% |
| !! | ATATAGAAGAAAATGAGAAA+TGG | - | chr5_3:57673696-57673715 | None:intergenic | 20.0% |
| !!! | ATAATTGGTTCTTTTTTCTT+TGG | - | chr5_3:57674081-57674100 | None:intergenic | 20.0% |
| !!! | TAATATAAGTTTGAGATCAA+AGG | + | chr5_3:57674269-57674288 | Msa0820380:CDS | 20.0% |
| !! | ACAAGTATTAAATATAACAC+CGG | - | chr5_3:57674594-57674613 | None:intergenic | 20.0% |
| !! | TTTATAATACATGTGTTAAG+AGG | - | chr5_3:57674620-57674639 | None:intergenic | 20.0% |
| !!! | AAAGAAATTTTTGGCAAGTA+TGG | + | chr5_3:57673029-57673048 | Msa0820380:exon | 25.0% |
| ! | GTACATAATATTAGACATTC+AGG | + | chr5_3:57673280-57673299 | Msa0820380:intron | 25.0% |
| ! | AGAGATATTTCATATGTTGA+GGG | + | chr5_3:57673336-57673355 | Msa0820380:intron | 25.0% |
| ! | AGTTGAAAATGATCAAAAGA+AGG | + | chr5_3:57674134-57674153 | Msa0820380:CDS | 25.0% |
| !!! | ATTTTGTGTTTTGGTTCTTT+CGG | - | chr5_3:57672997-57673016 | None:intergenic | 25.0% |
| !!! | AAAGAAATTTTTGGCAAGTA+TGG | + | chr5_3:57673029-57673048 | Msa0820380:exon | 25.0% |
| ! | GTACATAATATTAGACATTC+AGG | + | chr5_3:57673280-57673299 | Msa0820380:intron | 25.0% |
| ! | AGAGATATTTCATATGTTGA+GGG | + | chr5_3:57673336-57673355 | Msa0820380:intron | 25.0% |
| ! | AGTTGAAAATGATCAAAAGA+AGG | + | chr5_3:57674134-57674153 | Msa0820380:CDS | 25.0% |
| AAATCTTTGTAAACACGATC+AGG | - | chr5_3:57673075-57673094 | None:intergenic | 30.0% | |
| ATTTGCAACCATATCATGAA+TGG | + | chr5_3:57673091-57673110 | Msa0820380:CDS | 30.0% | |
| TCTTCATTCCATTCATGATA+TGG | - | chr5_3:57673102-57673121 | None:intergenic | 30.0% | |
| TGCAAAGTTAAACATATACC+TGG | - | chr5_3:57673156-57673175 | None:intergenic | 30.0% | |
| ATAATATTAGACATTCAGGC+CGG | + | chr5_3:57673284-57673303 | Msa0820380:intron | 30.0% | |
| CAGAGATATTTCATATGTTG+AGG | + | chr5_3:57673335-57673354 | Msa0820380:intron | 30.0% | |
| ! | TTTTTGTTCAAAGAGTGATG+CGG | - | chr5_3:57673384-57673403 | None:intergenic | 30.0% |
| ! | TGGTTAGTCATGTTTGATAT+CGG | + | chr5_3:57673508-57673527 | Msa0820380:intron | 30.0% |
| AAAACTTAGTGATGAACCTA+AGG | + | chr5_3:57674011-57674030 | Msa0820380:CDS | 30.0% | |
| AAAATGATCAAAAGAAGGTG+AGG | + | chr5_3:57674139-57674158 | Msa0820380:CDS | 30.0% | |
| AGAAGTTATTAAAACTGCTG+AGG | + | chr5_3:57674188-57674207 | Msa0820380:CDS | 30.0% | |
| GAAGTTATTAAAACTGCTGA+GGG | + | chr5_3:57674189-57674208 | Msa0820380:CDS | 30.0% | |
| TGACACAAAGATTGAAAACA+AGG | + | chr5_3:57674235-57674254 | Msa0820380:CDS | 30.0% | |
| ! | TTTGAGATCAAAGGATGATA+AGG | + | chr5_3:57674278-57674297 | Msa0820380:CDS | 30.0% |
| GATAAGGATGTTAACCAATT+AGG | + | chr5_3:57674294-57674313 | Msa0820380:CDS | 30.0% | |
| ! | GATGTTAACCAATTAGGTTT+TGG | + | chr5_3:57674300-57674319 | Msa0820380:CDS | 30.0% |
| !!! | AACCAATTAGGTTTTGGTTT+TGG | + | chr5_3:57674306-57674325 | Msa0820380:CDS | 30.0% |
| GTTATTGGTGAATATGATTG+TGG | + | chr5_3:57674353-57674372 | Msa0820380:CDS | 30.0% | |
| TGTATGTCAAAAATGCATTG+TGG | + | chr5_3:57674403-57674422 | Msa0820380:CDS | 30.0% | |
| !!! | TTTTGTGTTTTGGTTCTTTC+GGG | - | chr5_3:57672996-57673015 | None:intergenic | 30.0% |
| AAATCTTTGTAAACACGATC+AGG | - | chr5_3:57673075-57673094 | None:intergenic | 30.0% | |
| ATTTGCAACCATATCATGAA+TGG | + | chr5_3:57673091-57673110 | Msa0820380:CDS | 30.0% | |
| TCTTCATTCCATTCATGATA+TGG | - | chr5_3:57673102-57673121 | None:intergenic | 30.0% | |
| TGCAAAGTTAAACATATACC+TGG | - | chr5_3:57673156-57673175 | None:intergenic | 30.0% | |
| ATAATATTAGACATTCAGGC+CGG | + | chr5_3:57673284-57673303 | Msa0820380:intron | 30.0% | |
| CAGAGATATTTCATATGTTG+AGG | + | chr5_3:57673335-57673354 | Msa0820380:intron | 30.0% | |
| ! | TTTTTGTTCAAAGAGTGATG+CGG | - | chr5_3:57673384-57673403 | None:intergenic | 30.0% |
| ! | TGGTTAGTCATGTTTGATAT+CGG | + | chr5_3:57673508-57673527 | Msa0820380:intron | 30.0% |
| AAAACTTAGTGATGAACCTA+AGG | + | chr5_3:57674011-57674030 | Msa0820380:CDS | 30.0% | |
| AAAATGATCAAAAGAAGGTG+AGG | + | chr5_3:57674139-57674158 | Msa0820380:CDS | 30.0% | |
| AGAAGTTATTAAAACTGCTG+AGG | + | chr5_3:57674188-57674207 | Msa0820380:CDS | 30.0% | |
| GAAGTTATTAAAACTGCTGA+GGG | + | chr5_3:57674189-57674208 | Msa0820380:CDS | 30.0% | |
| TGACACAAAGATTGAAAACA+AGG | + | chr5_3:57674235-57674254 | Msa0820380:CDS | 30.0% | |
| ! | TTTGAGATCAAAGGATGATA+AGG | + | chr5_3:57674278-57674297 | Msa0820380:CDS | 30.0% |
| GATAAGGATGTTAACCAATT+AGG | + | chr5_3:57674294-57674313 | Msa0820380:CDS | 30.0% | |
| ! | GATGTTAACCAATTAGGTTT+TGG | + | chr5_3:57674300-57674319 | Msa0820380:CDS | 30.0% |
| !!! | AACCAATTAGGTTTTGGTTT+TGG | + | chr5_3:57674306-57674325 | Msa0820380:CDS | 30.0% |
| GTTATTGGTGAATATGATTG+TGG | + | chr5_3:57674353-57674372 | Msa0820380:CDS | 30.0% | |
| TGTATGTCAAAAATGCATTG+TGG | + | chr5_3:57674403-57674422 | Msa0820380:CDS | 30.0% | |
| TTTGGCAAGTATGGATCAAA+AGG | + | chr5_3:57673038-57673057 | Msa0820380:exon | 35.0% | |
| TTTAACGCGATTCAAAATCG+TGG | + | chr5_3:57673488-57673507 | Msa0820380:intron | 35.0% | |
| ! | CTTTCTTTTCCAACAAGAAC+AGG | + | chr5_3:57673727-57673746 | Msa0820380:intron | 35.0% |
| TTTGTGAATCCTGTTCTTGT+TGG | - | chr5_3:57673739-57673758 | None:intergenic | 35.0% | |
| AACAAGAACAGGATTCACAA+AGG | + | chr5_3:57673738-57673757 | Msa0820380:intron | 35.0% | |
| GTCTTTCACAATTGATCCTT+AGG | - | chr5_3:57673798-57673817 | None:intergenic | 35.0% | |
| AGGATCAATTGTGAAAGACA+AGG | + | chr5_3:57673799-57673818 | Msa0820380:CDS | 35.0% | |
| GGATCAATTGTGAAAGACAA+GGG | + | chr5_3:57673800-57673819 | Msa0820380:CDS | 35.0% | |
| GACAAGGGATTGAGAATATA+TGG | + | chr5_3:57673815-57673834 | Msa0820380:CDS | 35.0% | |
| ! | GAGAATATATGGCATCGTTT+TGG | + | chr5_3:57673826-57673845 | Msa0820380:CDS | 35.0% |
| ! | TTGTGGCATTGAAGATTCTT+GGG | - | chr5_3:57673992-57674011 | None:intergenic | 35.0% |
| ! | TTTGTGGCATTGAAGATTCT+TGG | - | chr5_3:57673993-57674012 | None:intergenic | 35.0% |
| ! | GGTTCATCACTAAGTTTTTG+TGG | - | chr5_3:57674009-57674028 | None:intergenic | 35.0% |
| TATTAAAACTGCTGAGGGTA+AGG | + | chr5_3:57674194-57674213 | Msa0820380:CDS | 35.0% | |
| ATTAAAACTGCTGAGGGTAA+GGG | + | chr5_3:57674195-57674214 | Msa0820380:CDS | 35.0% | |
| CACCAAAACCAAAACCTAAT+TGG | - | chr5_3:57674311-57674330 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTTTGGTGACATA+AGG | + | chr5_3:57674316-57674335 | Msa0820380:CDS | 35.0% |
| TCATCATCATCATCATCTCA+AGG | + | chr5_3:57674429-57674448 | Msa0820380:CDS | 35.0% | |
| ATCATCTCAAGGAGAATCAA+AGG | + | chr5_3:57674440-57674459 | Msa0820380:CDS | 35.0% | |
| GAAGTTTGATCAAATCACAC+CGG | + | chr5_3:57674572-57674591 | Msa0820380:three_prime_UTR | 35.0% | |
| TTTGGCAAGTATGGATCAAA+AGG | + | chr5_3:57673038-57673057 | Msa0820380:exon | 35.0% | |
| TTTAACGCGATTCAAAATCG+TGG | + | chr5_3:57673488-57673507 | Msa0820380:intron | 35.0% | |
| ! | CTTTCTTTTCCAACAAGAAC+AGG | + | chr5_3:57673727-57673746 | Msa0820380:intron | 35.0% |
| TTTGTGAATCCTGTTCTTGT+TGG | - | chr5_3:57673739-57673758 | None:intergenic | 35.0% | |
| AACAAGAACAGGATTCACAA+AGG | + | chr5_3:57673738-57673757 | Msa0820380:intron | 35.0% | |
| GTCTTTCACAATTGATCCTT+AGG | - | chr5_3:57673798-57673817 | None:intergenic | 35.0% | |
| AGGATCAATTGTGAAAGACA+AGG | + | chr5_3:57673799-57673818 | Msa0820380:CDS | 35.0% | |
| GGATCAATTGTGAAAGACAA+GGG | + | chr5_3:57673800-57673819 | Msa0820380:CDS | 35.0% | |
| GACAAGGGATTGAGAATATA+TGG | + | chr5_3:57673815-57673834 | Msa0820380:CDS | 35.0% | |
| ! | GAGAATATATGGCATCGTTT+TGG | + | chr5_3:57673826-57673845 | Msa0820380:CDS | 35.0% |
| ! | TTGTGGCATTGAAGATTCTT+GGG | - | chr5_3:57673992-57674011 | None:intergenic | 35.0% |
| ! | TTTGTGGCATTGAAGATTCT+TGG | - | chr5_3:57673993-57674012 | None:intergenic | 35.0% |
| ! | GGTTCATCACTAAGTTTTTG+TGG | - | chr5_3:57674009-57674028 | None:intergenic | 35.0% |
| TATTAAAACTGCTGAGGGTA+AGG | + | chr5_3:57674194-57674213 | Msa0820380:CDS | 35.0% | |
| ATTAAAACTGCTGAGGGTAA+GGG | + | chr5_3:57674195-57674214 | Msa0820380:CDS | 35.0% | |
| CACCAAAACCAAAACCTAAT+TGG | - | chr5_3:57674311-57674330 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTTTGGTGACATA+AGG | + | chr5_3:57674316-57674335 | Msa0820380:CDS | 35.0% |
| TCATCATCATCATCATCTCA+AGG | + | chr5_3:57674429-57674448 | Msa0820380:CDS | 35.0% | |
| ATCATCTCAAGGAGAATCAA+AGG | + | chr5_3:57674440-57674459 | Msa0820380:CDS | 35.0% | |
| GAAGTTTGATCAAATCACAC+CGG | + | chr5_3:57674572-57674591 | Msa0820380:three_prime_UTR | 35.0% | |
| TGGTAGCATTAGAACAAGAG+TGG | - | chr5_3:57673136-57673155 | None:intergenic | 40.0% | |
| ACTCTTGTTCTAATGCTACC+AGG | + | chr5_3:57673135-57673154 | Msa0820380:CDS | 40.0% | |
| ACCATGTGAGTTGTACTTAC+CGG | - | chr5_3:57673306-57673325 | None:intergenic | 40.0% | |
| TTTCATATGTTGAGGGCTTG+AGG | + | chr5_3:57673343-57673362 | Msa0820380:intron | 40.0% | |
| AGAGTGCAAGTGACTTCAAA+AGG | + | chr5_3:57673769-57673788 | Msa0820380:CDS | 40.0% | |
| !! | TGACTTCAAAAGGTGTCCTA+AGG | + | chr5_3:57673779-57673798 | Msa0820380:CDS | 40.0% |
| GTCTCACAATATGGAGGAAT+TGG | - | chr5_3:57673862-57673881 | None:intergenic | 40.0% | |
| ! | TCATTGGTCTCACAATATGG+AGG | - | chr5_3:57673868-57673887 | None:intergenic | 40.0% |
| ! | ACGTCATTGGTCTCACAATA+TGG | - | chr5_3:57673871-57673890 | None:intergenic | 40.0% |
| !! | TTAGCTGGAGTGATTAGCTT+TGG | - | chr5_3:57673934-57673953 | None:intergenic | 40.0% |
| TGTTCTTGAGGCTTATTAGC+TGG | - | chr5_3:57673949-57673968 | None:intergenic | 40.0% | |
| GTGATAGGTTCTTGTTCTTG+AGG | - | chr5_3:57673961-57673980 | None:intergenic | 40.0% | |
| ! | TGTGGCATTGAAGATTCTTG+GGG | - | chr5_3:57673991-57674010 | None:intergenic | 40.0% |
| GAGGACTAATGATGAGTTGT+TGG | + | chr5_3:57674158-57674177 | Msa0820380:CDS | 40.0% | |
| ACCAATAACTTCCCCTTCTT+AGG | - | chr5_3:57674342-57674361 | None:intergenic | 40.0% | |
| TATGATTGTGGCATCCTTGT+TGG | + | chr5_3:57674365-57674384 | Msa0820380:CDS | 40.0% | |
| TGGTAGCATTAGAACAAGAG+TGG | - | chr5_3:57673136-57673155 | None:intergenic | 40.0% | |
| ACTCTTGTTCTAATGCTACC+AGG | + | chr5_3:57673135-57673154 | Msa0820380:CDS | 40.0% | |
| ACCATGTGAGTTGTACTTAC+CGG | - | chr5_3:57673306-57673325 | None:intergenic | 40.0% | |
| TTTCATATGTTGAGGGCTTG+AGG | + | chr5_3:57673343-57673362 | Msa0820380:intron | 40.0% | |
| AGAGTGCAAGTGACTTCAAA+AGG | + | chr5_3:57673769-57673788 | Msa0820380:CDS | 40.0% | |
| !! | TGACTTCAAAAGGTGTCCTA+AGG | + | chr5_3:57673779-57673798 | Msa0820380:CDS | 40.0% |
| GTCTCACAATATGGAGGAAT+TGG | - | chr5_3:57673862-57673881 | None:intergenic | 40.0% | |
| ! | TCATTGGTCTCACAATATGG+AGG | - | chr5_3:57673868-57673887 | None:intergenic | 40.0% |
| ! | ACGTCATTGGTCTCACAATA+TGG | - | chr5_3:57673871-57673890 | None:intergenic | 40.0% |
| !! | TTAGCTGGAGTGATTAGCTT+TGG | - | chr5_3:57673934-57673953 | None:intergenic | 40.0% |
| TGTTCTTGAGGCTTATTAGC+TGG | - | chr5_3:57673949-57673968 | None:intergenic | 40.0% | |
| GTGATAGGTTCTTGTTCTTG+AGG | - | chr5_3:57673961-57673980 | None:intergenic | 40.0% | |
| ! | TGTGGCATTGAAGATTCTTG+GGG | - | chr5_3:57673991-57674010 | None:intergenic | 40.0% |
| GAGGACTAATGATGAGTTGT+TGG | + | chr5_3:57674158-57674177 | Msa0820380:CDS | 40.0% | |
| ACCAATAACTTCCCCTTCTT+AGG | - | chr5_3:57674342-57674361 | None:intergenic | 40.0% | |
| TATGATTGTGGCATCCTTGT+TGG | + | chr5_3:57674365-57674384 | Msa0820380:CDS | 40.0% | |
| AAACTTGGCACTCACGTCAT+TGG | - | chr5_3:57673884-57673903 | None:intergenic | 45.0% | |
| ! | TCTTGGGGTGGATTTGTGAT+AGG | - | chr5_3:57673976-57673995 | None:intergenic | 45.0% |
| TCAACCACTTGTGCTTGTGT+TGG | - | chr5_3:57674039-57674058 | None:intergenic | 45.0% | |
| TGGTGACATAAGGCCTAAGA+AGG | + | chr5_3:57674326-57674345 | Msa0820380:CDS | 45.0% | |
| GGTGACATAAGGCCTAAGAA+GGG | + | chr5_3:57674327-57674346 | Msa0820380:CDS | 45.0% | |
| GTGACATAAGGCCTAAGAAG+GGG | + | chr5_3:57674328-57674347 | Msa0820380:CDS | 45.0% | |
| GCCTAAGAAGGGGAAGTTAT+TGG | + | chr5_3:57674338-57674357 | Msa0820380:CDS | 45.0% | |
| !!! | TGTGGCATCCTTGTTGGTTT+TGG | + | chr5_3:57674371-57674390 | Msa0820380:CDS | 45.0% |
| !!! | TCCTTGTTGGTTTTGGTGCT+TGG | + | chr5_3:57674378-57674397 | Msa0820380:CDS | 45.0% |
| !!! | CCTTGTTGGTTTTGGTGCTT+GGG | + | chr5_3:57674379-57674398 | Msa0820380:CDS | 45.0% |
| !!! | CTTGTTGGTTTTGGTGCTTG+GGG | + | chr5_3:57674380-57674399 | Msa0820380:CDS | 45.0% |
| AAACTTGGCACTCACGTCAT+TGG | - | chr5_3:57673884-57673903 | None:intergenic | 45.0% | |
| ! | TCTTGGGGTGGATTTGTGAT+AGG | - | chr5_3:57673976-57673995 | None:intergenic | 45.0% |
| TCAACCACTTGTGCTTGTGT+TGG | - | chr5_3:57674039-57674058 | None:intergenic | 45.0% | |
| TGGTGACATAAGGCCTAAGA+AGG | + | chr5_3:57674326-57674345 | Msa0820380:CDS | 45.0% | |
| GGTGACATAAGGCCTAAGAA+GGG | + | chr5_3:57674327-57674346 | Msa0820380:CDS | 45.0% | |
| GTGACATAAGGCCTAAGAAG+GGG | + | chr5_3:57674328-57674347 | Msa0820380:CDS | 45.0% | |
| GCCTAAGAAGGGGAAGTTAT+TGG | + | chr5_3:57674338-57674357 | Msa0820380:CDS | 45.0% | |
| !!! | TGTGGCATCCTTGTTGGTTT+TGG | + | chr5_3:57674371-57674390 | Msa0820380:CDS | 45.0% |
| !!! | TCCTTGTTGGTTTTGGTGCT+TGG | + | chr5_3:57674378-57674397 | Msa0820380:CDS | 45.0% |
| !!! | CCTTGTTGGTTTTGGTGCTT+GGG | + | chr5_3:57674379-57674398 | Msa0820380:CDS | 45.0% |
| !!! | CTTGTTGGTTTTGGTGCTTG+GGG | + | chr5_3:57674380-57674399 | Msa0820380:CDS | 45.0% |
| GCCGGTAAGTACAACTCACA+TGG | + | chr5_3:57673302-57673321 | Msa0820380:intron | 50.0% | |
| TAGCACTCCACGCTCAAACT+TGG | - | chr5_3:57673899-57673918 | None:intergenic | 50.0% | |
| ! | GGCATTGAAGATTCTTGGGG+TGG | - | chr5_3:57673988-57674007 | None:intergenic | 50.0% |
| ! | TGTGCTTGTGTTGGTGCCTT+AGG | - | chr5_3:57674030-57674049 | None:intergenic | 50.0% |
| GAGGGTAAGGGAAAGAGACA+AGG | + | chr5_3:57674207-57674226 | Msa0820380:CDS | 50.0% | |
| CCCAAGCACCAAAACCAACA+AGG | - | chr5_3:57674382-57674401 | None:intergenic | 50.0% | |
| GCCGGTAAGTACAACTCACA+TGG | + | chr5_3:57673302-57673321 | Msa0820380:intron | 50.0% | |
| TAGCACTCCACGCTCAAACT+TGG | - | chr5_3:57673899-57673918 | None:intergenic | 50.0% | |
| ! | GGCATTGAAGATTCTTGGGG+TGG | - | chr5_3:57673988-57674007 | None:intergenic | 50.0% |
| ! | TGTGCTTGTGTTGGTGCCTT+AGG | - | chr5_3:57674030-57674049 | None:intergenic | 50.0% |
| GAGGGTAAGGGAAAGAGACA+AGG | + | chr5_3:57674207-57674226 | Msa0820380:CDS | 50.0% | |
| CCCAAGCACCAAAACCAACA+AGG | - | chr5_3:57674382-57674401 | None:intergenic | 50.0% | |
| TATGTTGAGGGCTTGAGGCG+CGG | + | chr5_3:57673348-57673367 | Msa0820380:intron | 55.0% | |
| GTGAGTGCCAAGTTTGAGCG+TGG | + | chr5_3:57673889-57673908 | Msa0820380:CDS | 55.0% | |
| GGCACCAACACAAGCACAAG+TGG | + | chr5_3:57674032-57674051 | Msa0820380:CDS | 55.0% | |
| TATGTTGAGGGCTTGAGGCG+CGG | + | chr5_3:57673348-57673367 | Msa0820380:intron | 55.0% | |
| GTGAGTGCCAAGTTTGAGCG+TGG | + | chr5_3:57673889-57673908 | Msa0820380:CDS | 55.0% | |
| GGCACCAACACAAGCACAAG+TGG | + | chr5_3:57674032-57674051 | Msa0820380:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 57672996 | 57674683 | 57672996 | ID=Msa0820380;Name=Msa0820380 |
| chr5_3 | mRNA | 57672996 | 57674683 | 57672996 | ID=Msa0820380-mRNA-1;Parent=Msa0820380;Name=Msa0820380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=52|1|1|1|1|1|2|213|276 |
| chr5_3 | exon | 57672996 | 57673156 | 57672996 | ID=Msa0820380-mRNA-1:exon:17430;Parent=Msa0820380-mRNA-1 |
| chr5_3 | exon | 57673749 | 57674683 | 57673749 | ID=Msa0820380-mRNA-1:exon:17431;Parent=Msa0820380-mRNA-1 |
| chr5_3 | five_prime_UTR | 57672996 | 57673047 | 57672996 | ID=Msa0820380-mRNA-1:five_prime_utr;Parent=Msa0820380-mRNA-1 |
| chr5_3 | CDS | 57673048 | 57673156 | 57673048 | ID=Msa0820380-mRNA-1:cds;Parent=Msa0820380-mRNA-1 |
| chr5_3 | CDS | 57673749 | 57674470 | 57673749 | ID=Msa0820380-mRNA-1:cds;Parent=Msa0820380-mRNA-1 |
| chr5_3 | three_prime_UTR | 57674471 | 57674683 | 57674471 | ID=Msa0820380-mRNA-1:three_prime_utr;Parent=Msa0820380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
