AlfalfaGEDB | Msa0759660

M. sativa cultivar zhongmu-4 / Msa0759660

KEGG: K02930
GO: GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00573.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759660	sp\|Q9SF40\|RL4A_ARATH	82.222	405	72	0	3	407	2	406	0.0	685

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759660	B7FHR0	97.783	406	9	0	2	407	3	408	0.0	810

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0094210	Msa0759660	0.802115	6.537085e-49	-8.615850e-47
Msa0132460	Msa0759660	0.827355	1.637887e-54	-8.615850e-47
Msa0182050	Msa0759660	0.827184	1.800187e-54	-8.615850e-47
Msa0182100	Msa0759660	0.817570	3.079037e-52	-8.615850e-47
Msa0188740	Msa0759660	0.812020	5.231002e-51	-8.615850e-47
Msa0270160	Msa0759660	0.804311	2.296298e-49	-8.615850e-47
Msa0371490	Msa0759660	0.806051	9.923325e-50	-8.615850e-47
Msa0578010	Msa0759660	0.824817	6.571433e-54	-8.615850e-47
Msa0656450	Msa0759660	0.811857	5.675148e-51	-8.615850e-47
Msa0708630	Msa0759660	0.828093	1.088825e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
Msa0759660	MtrunA17_Chr5g0407811	97.783	406	9	2	407	3	408	810
Msa0759660	MtrunA17_Chr1g0168531	95.556	405	18	3	407	47	451	747
Msa0759660	MtrunA17_Chr1g0181761	92.822	404	29	4	407	2	405	733

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0759660	AT3G09630.1	82.222	405	72	0	3	407	2	406	685
Msa0759660	AT3G09630.2	81.975	405	72	1	3	407	2	405	678
Msa0759660	AT5G02870.1	81.081	407	77	0	1	407	1	407	677
Msa0759660	AT5G02870.2	80.835	407	77	1	1	407	1	406	669

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Find 156 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCCAAGGATAGCCTT+GGG	0.538830	5_2:+15413638	Msa0759660:CDS
AACCTACCCAAATGCCCACC+CGG	0.552263	5_2:-15413823	None:intergenic
AAGCAGCCTGACCAGCACGG+TGG	0.701528	5_2:-15413348	None:intergenic
AAGGGACCGTTGATTGTTTA+TGG	0.172085	5_2:+15413709	Msa0759660:CDS
AAGGGTTCGGAGAAGAAGAA+AGG	0.539248	5_2:+15413904	Msa0759660:CDS
AAGGTATGCACCTAGCTATC+GGG	0.517073	5_2:+15416465	Msa0759660:three_prime_UTR
AATACGTGAAACAGCACGTC+CGG	0.525790	5_2:-15413302	None:intergenic
AATGGTGGTTGGTGAATCGG+CGG	0.669878	5_2:-15413140	None:intergenic
AATGTGTAATAATCTTAAAC+CGG	0.479016	5_2:-15416325	None:intergenic
AATTATGGCGAACATATAAA+TGG	0.284147	5_2:-15416253	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATTGGATTCGATCTAT+GGG	+	chr5_2:15413872-15413891	Msa0759660:CDS	30.0%
TGGTGAATTCTGATTTAACT+AGG	+	chr5_2:15413950-15413969	Msa0759660:CDS	30.0%
CTCTTAACATCCTTCTTAAT+CGG	-	chr5_2:15414012-15414031	None:intergenic	30.0%
GATTAAGAAGGATGTTAAGA+GGG	+	chr5_2:15414011-15414030	Msa0759660:CDS	30.0%
TTTGATTCTATCGTGAAGAT+AGG	+	chr5_2:15414533-15414552	Msa0759660:intron	30.0%
TTAACTTCATGTGTAAGTGA+GGG	+	chr5_2:15414693-15414712	Msa0759660:intron	30.0%
TTAAGACAATACAAGTGCAA+AGG	-	chr5_2:15414719-15414738	None:intergenic	30.0%
TTAACTTCATGTGTAAGTGA+GGG	+	chr5_2:15414693-15414712	Msa0759660:intron	30.0%
GTAATCATAGTAGTCAATAG+TGG	+	chr5_2:15414935-15414954	Msa0759660:intron	30.0%
ACCATACAACAAAGTCTATT+TGG	-	chr5_2:15415176-15415195	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	15412959	15416519	15412959	ID=Msa0759660;Name=Msa0759660
chr5_2	mRNA	15412959	15416519	15412959	ID=Msa0759660-mRNA-1;Parent=Msa0759660;Name=Msa0759660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120\|1\|1\|1\|1\|1\|2\|270\|407
chr5_2	exon	15412959	15414188	15412959	ID=Msa0759660-mRNA-1:exon:6979;Parent=Msa0759660-mRNA-1
chr5_2	exon	15416136	15416519	15416136	ID=Msa0759660-mRNA-1:exon:6980;Parent=Msa0759660-mRNA-1
chr5_2	five_prime_UTR	15412959	15413078	15412959	ID=Msa0759660-mRNA-1:five_prime_utr;Parent=Msa0759660-mRNA-1
chr5_2	CDS	15413079	15414188	15413079	ID=Msa0759660-mRNA-1:cds;Parent=Msa0759660-mRNA-1
chr5_2	CDS	15416136	15416249	15416136	ID=Msa0759660-mRNA-1:cds;Parent=Msa0759660-mRNA-1
chr5_2	three_prime_UTR	15416250	15416519	15416250	ID=Msa0759660-mRNA-1:three_prime_utr;Parent=Msa0759660-mRNA-1

Gene Sequence

>Msa0759660

ATGGCCGCCGCAGCAGCAGCACGTCCCCTCGTCACAATCCAAACCCTAGAATCGGAAATGTCCGCCGATTCACCAACCACCATTCCAATCCCCGATGTCATGCGTGCTTCAATCCGTCCTGACATCGTCAACTTCGTCCATTCCAACATTTCCAAAAACTCCAGACAACCTTACGCCGTCAGCCGGAAAGCTGGTCACCAAACCTCAGCTGAATCATGGGGTACCGGACGTGCTGTTTCACGTATTCCTCGTGTTGCAGGTGGTGGGACCCACCGTGCTGGTCAGGCTGCTTTTGGTAACATGTGTCGTGGTGGTAGAATGTTTGCTCCGACTAGGATCTGGAGGAAATGGCATAGGAAGATTAATGTTAATCAGAAACGTTATGCTGTTGTTTCAGCTATAGCAGCTTCTGCTATTCCTTCATTGGTTCTTGCTCGTGGTCACAGGATTGAGACTGTTCCTGAGTTTCCTCTTGTTGTTGGTGATGCTGCTGAAGGAGTAGAGAAAACTAAGGAGGCTATTAAGGTTTTGAAGCAGGTTGGTGCTTTTGCTGATGCTGAAAAGGCCAAGGATAGCCTTGGGATTAGACCCGGGAAGGGGAAGATGAGGAACAGGCGATATATATTGCGAAAGGGACCGTTGATTGTTTATGGTACCGAAGGGGCGAAGGCGGTTAAGGCTTTTAGGAATATTCCTGGTGTTGAGATTACTAATGTGGAGAGGTTGAATCTTTTGAAGCTTGCACCGGGTGGGCATTTGGGTAGGTTTGTGATTTGGACTAAGTCGGCTTTTGAGAAATTGGATTCGATCTATGGGACGTTTGCTAAGGGTTCGGAGAAGAAGAAAGGGTATGTTTTACCTAGGGCTAAGATGGTGAATTCTGATTTAACTAGGATTATTAATAGTGATGAGGTGCAGAGTGTTGTGAGGCCGATTAAGAAGGATGTTAAGAGGGCTACGCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGACTTAATCCTTATGCCAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAGGCTGAAAGGGTTAAGGCTAAGAAGGAGAAGCTCGATAAGAAGAGAAAGACTGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGGAAAGCTTGGTATAACACCATGGTCTCAGATTCTGATTATGCTGAATTTGACAACTTCTCTAAATGGCTAGGGGTTTCTCAGTAA

Protein sequence

>Msa0759660

MAAAAAARPLVTIQTLESEMSADSPTTIPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIETVPEFPLVVGDAAEGVEKTKEAIKVLKQVGAFADAEKAKDSLGIRPGKGKMRNRRYILRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGTFAKGSEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYAEFDNFSKWLGVSQ*