Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759660 | sp|Q9SF40|RL4A_ARATH | 82.222 | 405 | 72 | 0 | 3 | 407 | 2 | 406 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759660 | B7FHR0 | 97.783 | 406 | 9 | 0 | 2 | 407 | 3 | 408 | 0.0 | 810 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094210 | Msa0759660 | 0.802115 | 6.537085e-49 | -8.615850e-47 |
| Msa0656450 | Msa0759660 | 0.811857 | 5.675148e-51 | -8.615850e-47 |
| Msa0708630 | Msa0759660 | 0.828093 | 1.088825e-54 | -8.615850e-47 |
| Msa0718560 | Msa0759660 | 0.854620 | 1.090572e-61 | -8.615850e-47 |
| Msa0759660 | Msa0790450 | 0.805461 | 1.320457e-49 | -8.615850e-47 |
| Msa0759660 | Msa0863290 | 0.817375 | 3.407140e-52 | -8.615850e-47 |
| Msa0759660 | Msa0930360 | 0.815894 | 7.316909e-52 | -8.615850e-47 |
| Msa0759660 | Msa0930790 | 0.811890 | 5.582730e-51 | -8.615850e-47 |
| Msa0759660 | Msa1126690 | 0.802574 | 5.259830e-49 | -8.615850e-47 |
| Msa0759660 | Msa1144610 | 0.818422 | 1.977010e-52 | -8.615850e-47 |
| Msa0759660 | Msa1245270 | 0.847496 | 1.114644e-59 | -8.615850e-47 |
| Msa0759660 | Msa1351020 | 0.801682 | 8.023827e-49 | -8.615850e-47 |
| Msa0759660 | Msa1363910 | 0.801865 | 7.360292e-49 | -8.615850e-47 |
| Msa0759660 | Msa1403520 | 0.800900 | 1.160074e-48 | -8.615850e-47 |
| Msa0759660 | Msa1413570 | 0.816694 | 4.846919e-52 | -8.615850e-47 |
| Msa0759660 | Msa1424570 | 0.814621 | 1.403809e-51 | -8.615850e-47 |
| Msa0759660 | Msa1432310 | 0.807967 | 3.902505e-50 | -8.615850e-47 |
| Msa0759660 | Msa1450560 | 0.807510 | 4.880772e-50 | -8.615850e-47 |
| Msa0132460 | Msa0759660 | 0.827355 | 1.637887e-54 | -8.615850e-47 |
| Msa0182050 | Msa0759660 | 0.827184 | 1.800187e-54 | -8.615850e-47 |
| Msa0182100 | Msa0759660 | 0.817570 | 3.079037e-52 | -8.615850e-47 |
| Msa0188740 | Msa0759660 | 0.812020 | 5.231002e-51 | -8.615850e-47 |
| Msa0371490 | Msa0759660 | 0.806051 | 9.923325e-50 | -8.615850e-47 |
| Msa0270160 | Msa0759660 | 0.804311 | 2.296298e-49 | -8.615850e-47 |
| Msa0578010 | Msa0759660 | 0.824817 | 6.571433e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759660 | MtrunA17_Chr5g0407811 | 97.783 | 406 | 9 | 0 | 2 | 407 | 3 | 408 | 0.0 | 810 |
| Msa0759660 | MtrunA17_Chr1g0168531 | 95.556 | 405 | 18 | 0 | 3 | 407 | 47 | 451 | 0.0 | 747 |
| Msa0759660 | MtrunA17_Chr1g0181761 | 92.822 | 404 | 29 | 0 | 4 | 407 | 2 | 405 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759660 | AT3G09630.1 | 82.222 | 405 | 72 | 0 | 3 | 407 | 2 | 406 | 0.0 | 685 |
| Msa0759660 | AT3G09630.2 | 81.975 | 405 | 72 | 1 | 3 | 407 | 2 | 405 | 0.0 | 678 |
| Msa0759660 | AT5G02870.1 | 81.081 | 407 | 77 | 0 | 1 | 407 | 1 | 407 | 0.0 | 677 |
| Msa0759660 | AT5G02870.2 | 80.835 | 407 | 77 | 1 | 1 | 407 | 1 | 406 | 0.0 | 669 |
Find 156 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGACCGTTGATTGTTTA+TGG | 0.172085 | 5_2:+15413709 | Msa0759660:CDS |
| GAGAAATTGGATTCGATCTA+TGG | 0.187639 | 5_2:+15413871 | Msa0759660:CDS |
| TTATCTGAACTAAATAATTT+TGG | 0.199263 | 5_2:+15416288 | Msa0759660:three_prime_UTR |
| GAAAACTAAGGAGGCTATTA+AGG | 0.230890 | 5_2:+15413582 | Msa0759660:CDS |
| GCTTGCACCGGGTGGGCATT+TGG | 0.242314 | 5_2:+15413816 | Msa0759660:CDS |
| GTTCCTCATCTTCCCCTTCC+CGG | 0.264935 | 5_2:-15413668 | None:intergenic |
| CGTGCTGGTCAGGCTGCTTT+TGG | 0.280197 | 5_2:+15413352 | Msa0759660:CDS |
| AATTATGGCGAACATATAAA+TGG | 0.284147 | 5_2:-15416253 | None:intergenic |
| CCTGAGTTTCCTCTTGTTGT+TGG | 0.285780 | 5_2:+15413538 | Msa0759660:CDS |
| AATTTGACAACTTCTCTAAA+TGG | 0.287943 | 5_2:+15416209 | Msa0759660:CDS |
| CGGCGGACATTTCCGATTCT+AGG | 0.295659 | 5_2:-15413123 | None:intergenic |
| AGCTTCTGCTATTCCTTCAT+TGG | 0.305726 | 5_2:+15413483 | Msa0759660:CDS |
| TCACGTATTCCTCGTGTTGC+AGG | 0.319460 | 5_2:+15413316 | Msa0759660:CDS |
| AGGTTTGGTGACCAGCTTTC+CGG | 0.324392 | 5_2:-15413261 | None:intergenic |
| CTCTTAACATCCTTCTTAAT+CGG | 0.329533 | 5_2:-15414009 | None:intergenic |
| CTTGCACCGGGTGGGCATTT+GGG | 0.333428 | 5_2:+15413817 | Msa0759660:CDS |
| AGCTTTCCCTGCAGCCTTGA+TGG | 0.333710 | 5_2:-15416149 | None:intergenic |
| GCTGCTGCTGCGGCGGCCAT+TGG | 0.334418 | 5_2:-15413076 | None:intergenic |
| ACATTTCCGATTCTAGGGTT+TGG | 0.356399 | 5_2:-15413117 | None:intergenic |
| ATTTGGGTAGGTTTGTGATT+TGG | 0.373636 | 5_2:+15413833 | Msa0759660:CDS |
| GCTGCTGCGGCGGCCATTGG+TGG | 0.376380 | 5_2:-15413073 | None:intergenic |
| CTCTTAGCAGTCTTGGCATA+AGG | 0.381657 | 5_2:-15414087 | None:intergenic |
| CGAAGGGGCGAAGGCGGTTA+AGG | 0.381946 | 5_2:+15413735 | Msa0759660:CDS |
| CGACTAGGATCTGGAGGAAA+TGG | 0.383246 | 5_2:+15413407 | Msa0759660:CDS |
| TGGAATGGTGGTTGGTGAAT+CGG | 0.390647 | 5_2:-15413143 | None:intergenic |
| CCCATGATTCAGCTGAGGTT+TGG | 0.398368 | 5_2:-15413276 | None:intergenic |
| GGAAGGGGAAGATGAGGAAC+AGG | 0.401302 | 5_2:+15413671 | Msa0759660:CDS |
| CTTTGCTTGCTGAGGCTGAA+AGG | 0.401451 | 5_2:+15414115 | Msa0759660:CDS |
| GCTGCGGCGGCCATTGGTGG+AGG | 0.401489 | 5_2:-15413070 | None:intergenic |
| TGGACGAAGTTGACGATGTC+AGG | 0.402562 | 5_2:-15413196 | None:intergenic |
| GCTGACGGCGTAAGGTTGTC+TGG | 0.404851 | 5_2:-15413239 | None:intergenic |
| ATTCCTCGTGTTGCAGGTGG+TGG | 0.407586 | 5_2:+15413322 | Msa0759660:CDS |
| GAAGAGAAAGACTGTCTCTA+AGG | 0.412134 | 5_2:+15414167 | Msa0759660:CDS |
| TTCCTCATCTTCCCCTTCCC+GGG | 0.419374 | 5_2:-15413667 | None:intergenic |
| TGGGACCCACCGTGCTGGTC+AGG | 0.423632 | 5_2:+15413342 | Msa0759660:CDS |
| AGCTAGGTGCATACCTTACT+TGG | 0.430184 | 5_2:-15416459 | None:intergenic |
| ATAACATTAAGATTCTTAAG+AGG | 0.432087 | 5_2:-15414051 | None:intergenic |
| GAGATGAAGAGAGTGTGTTT+TGG | 0.432573 | 5_2:-15412959 | None:intergenic |
| TGTTTGCTCCGACTAGGATC+TGG | 0.436823 | 5_2:+15413398 | Msa0759660:CDS |
| ACCAAACCTCAGCTGAATCA+TGG | 0.447157 | 5_2:+15413275 | Msa0759660:CDS |
| ATTGAAGCACGCATGACATC+GGG | 0.449044 | 5_2:-15413169 | None:intergenic |
| TGCTGAGGCTGAAAGGGTTA+AGG | 0.459340 | 5_2:+15414122 | Msa0759660:CDS |
| CTTAACCGCCTTCGCCCCTT+CGG | 0.464630 | 5_2:-15413734 | None:intergenic |
| ATGCTGTCCCTGGCCAAGTA+AGG | 0.466393 | 5_2:+15416446 | Msa0759660:three_prime_UTR |
| TGGTTCTTGCTCGTGGTCAC+AGG | 0.467976 | 5_2:+15413503 | Msa0759660:CDS |
| ACAACTTCTCTAAATGGCTA+GGG | 0.469584 | 5_2:+15416215 | Msa0759660:CDS |
| TTTGCTTGCTGAGGCTGAAA+GGG | 0.469665 | 5_2:+15414116 | Msa0759660:CDS |
| AGCCATCCTCTTAGCAGTCT+TGG | 0.471110 | 5_2:-15414094 | None:intergenic |
| GCTTCTGCCATCAAGGCTGC+AGG | 0.471561 | 5_2:+15416142 | Msa0759660:CDS |
| TGGTGAATTCTGATTTAACT+AGG | 0.475496 | 5_2:+15413950 | Msa0759660:CDS |
| GTGTGTGTCGTGTGAGAAGA+AGG | 0.476941 | 5_2:-15412999 | None:intergenic |
| CCAAACCTCAGCTGAATCAT+GGG | 0.477617 | 5_2:+15413276 | Msa0759660:CDS |
| AATGTGTAATAATCTTAAAC+CGG | 0.479016 | 5_2:-15416325 | None:intergenic |
| CACAATCCAAACCCTAGAAT+CGG | 0.481379 | 5_2:+15413111 | Msa0759660:CDS |
| GATCTATGGGACGTTTGCTA+AGG | 0.482388 | 5_2:+15413885 | Msa0759660:CDS |
| TGGGACGTTTGCTAAGGGTT+CGG | 0.483103 | 5_2:+15413891 | Msa0759660:CDS |
| GCTTTCCGGCTGACGGCGTA+AGG | 0.484743 | 5_2:-15413247 | None:intergenic |
| GCACGCATGACATCGGGGAT+TGG | 0.485217 | 5_2:-15413163 | None:intergenic |
| GGCGGACATTTCCGATTCTA+GGG | 0.486402 | 5_2:-15413122 | None:intergenic |
| GTGACCAGCTTTCCGGCTGA+CGG | 0.489052 | 5_2:-15413254 | None:intergenic |
| TACGCCGTCAGCCGGAAAGC+TGG | 0.492481 | 5_2:+15413250 | Msa0759660:CDS |
| TAAGGTATGCACCTAGCTAT+CGG | 0.496967 | 5_2:+15416464 | Msa0759660:three_prime_UTR |
| CACCGGGTGGGCATTTGGGT+AGG | 0.501033 | 5_2:+15413821 | Msa0759660:CDS |
| TGAAAGGGTTAAGGCTAAGA+AGG | 0.502198 | 5_2:+15414131 | Msa0759660:CDS |
| TTTCTTCCTCCCTCCACCAA+TGG | 0.505861 | 5_2:+15413060 | Msa0759660:exon |
| TCAAGGCTGCAGGGAAAGCT+TGG | 0.505941 | 5_2:+15416152 | Msa0759660:CDS |
| GAAAAGGCCAAGGATAGCCT+TGG | 0.508889 | 5_2:+15413637 | Msa0759660:CDS |
| GACAACCTTACGCCGTCAGC+CGG | 0.509508 | 5_2:+15413242 | Msa0759660:CDS |
| GTTGTTGGTGATGCTGCTGA+AGG | 0.512772 | 5_2:+15413553 | Msa0759660:CDS |
| GTTTGTGATTTGGACTAAGT+CGG | 0.513758 | 5_2:+15413843 | Msa0759660:CDS |
| GGGACGTGCTGCTGCTGCGG+CGG | 0.515937 | 5_2:-15413083 | None:intergenic |
| GACAACTTCTCTAAATGGCT+AGG | 0.516462 | 5_2:+15416214 | Msa0759660:CDS |
| AAGGTATGCACCTAGCTATC+GGG | 0.517073 | 5_2:+15416465 | Msa0759660:three_prime_UTR |
| CGATTAAGAAGGATGTTAAG+AGG | 0.519292 | 5_2:+15414010 | Msa0759660:CDS |
| CTGCGGCGGCCATTGGTGGA+GGG | 0.520408 | 5_2:-15413069 | None:intergenic |
| ATCTATGGGACGTTTGCTAA+GGG | 0.523012 | 5_2:+15413886 | Msa0759660:CDS |
| GAGGATGGCTTTGCTTGCTG+AGG | 0.523283 | 5_2:+15414107 | Msa0759660:CDS |
| GGAGGAAGCTTCTGCCATCA+AGG | 0.523621 | 5_2:+15416135 | Msa0759660:intron |
| AGAAATTGGATTCGATCTAT+GGG | 0.523704 | 5_2:+15413872 | Msa0759660:CDS |
| TCTAATCCCAAGGCTATCCT+TGG | 0.524268 | 5_2:-15413644 | None:intergenic |
| AATACGTGAAACAGCACGTC+CGG | 0.525790 | 5_2:-15413302 | None:intergenic |
| TTGGGATTAGACCCGGGAAG+GGG | 0.526474 | 5_2:+15413656 | Msa0759660:CDS |
| AATTTGTTATATGCTGTCCC+TGG | 0.527625 | 5_2:+15416436 | Msa0759660:three_prime_UTR |
| GGTGCATACCTTACTTGGCC+AGG | 0.528908 | 5_2:-15416454 | None:intergenic |
| TCGGGGATTGGAATGGTGGT+TGG | 0.531430 | 5_2:-15413151 | None:intergenic |
| GGGAGGAAGAAACACTAGCT+AGG | 0.532621 | 5_2:-15413049 | None:intergenic |
| TGTTGTGAGGCCGATTAAGA+AGG | 0.535007 | 5_2:+15413999 | Msa0759660:CDS |
| CCTTCATTGGTTCTTGCTCG+TGG | 0.536411 | 5_2:+15413496 | Msa0759660:CDS |
| TGCTGATGCTGAAAAGGCCA+AGG | 0.537379 | 5_2:+15413627 | Msa0759660:CDS |
| AAAAGGCCAAGGATAGCCTT+GGG | 0.538830 | 5_2:+15413638 | Msa0759660:CDS |
| AAGGGTTCGGAGAAGAAGAA+AGG | 0.539248 | 5_2:+15413904 | Msa0759660:CDS |
| CGGCGGCCATTGGTGGAGGG+AGG | 0.548170 | 5_2:-15413066 | None:intergenic |
| TTGATTGTTTATGGTACCGA+AGG | 0.548502 | 5_2:+15413718 | Msa0759660:CDS |
| GGTGGTGGGACCCACCGTGC+TGG | 0.549222 | 5_2:+15413337 | Msa0759660:CDS |
| TCAGCAGACACCCGATAGCT+AGG | 0.550548 | 5_2:-15416475 | None:intergenic |
| AACCTACCCAAATGCCCACC+CGG | 0.552263 | 5_2:-15413823 | None:intergenic |
| AGCAGCCTGACCAGCACGGT+GGG | 0.552373 | 5_2:-15413347 | None:intergenic |
| GACATCGGGGATTGGAATGG+TGG | 0.557058 | 5_2:-15413155 | None:intergenic |
| CCTTGGGATTAGACCCGGGA+AGG | 0.558086 | 5_2:+15413654 | Msa0759660:CDS |
| TGATTGTTTATGGTACCGAA+GGG | 0.561790 | 5_2:+15413719 | Msa0759660:CDS |
| GATTGAAGCACGCATGACAT+CGG | 0.563386 | 5_2:-15413170 | None:intergenic |
| CTTATGCCAAGACTGCTAAG+AGG | 0.565343 | 5_2:+15414088 | Msa0759660:CDS |
| TTATGGTACCGAAGGGGCGA+AGG | 0.567293 | 5_2:+15413726 | Msa0759660:CDS |
| GATAGCCTTGGGATTAGACC+CGG | 0.567327 | 5_2:+15413649 | Msa0759660:CDS |
| CTTGGGATTAGACCCGGGAA+GGG | 0.569338 | 5_2:+15413655 | Msa0759660:CDS |
| GAATTCACCATCTTAGCCCT+AGG | 0.569796 | 5_2:-15413937 | None:intergenic |
| TTCCTCGTGTTGCAGGTGGT+GGG | 0.571891 | 5_2:+15413323 | Msa0759660:CDS |
| TACACATTATGCAGACAGCA+TGG | 0.574711 | 5_2:+15416340 | Msa0759660:three_prime_UTR |
| CTAGGGTTTGGATTGTGACG+AGG | 0.576558 | 5_2:-15413105 | None:intergenic |
| TCAGCTGAATCATGGGGTAC+CGG | 0.577134 | 5_2:+15413283 | Msa0759660:CDS |
| CGAAGTTGACGATGTCAGGA+CGG | 0.577332 | 5_2:-15413192 | None:intergenic |
| CGTATTCCTCGTGTTGCAGG+TGG | 0.577884 | 5_2:+15413319 | Msa0759660:CDS |
| TGAAGGAGTAGAGAAAACTA+AGG | 0.578428 | 5_2:+15413570 | Msa0759660:CDS |
| CCTTCCCGGGTCTAATCCCA+AGG | 0.579401 | 5_2:-15413654 | None:intergenic |
| CATGACATCGGGGATTGGAA+TGG | 0.580734 | 5_2:-15413158 | None:intergenic |
| ATAATCAGAATCTGAGACCA+TGG | 0.582620 | 5_2:-15416182 | None:intergenic |
| GGAGGAAGAAACACTAGCTA+GGG | 0.583478 | 5_2:-15413048 | None:intergenic |
| GCAGCATCACCAACAACAAG+AGG | 0.587525 | 5_2:-15413547 | None:intergenic |
| TAGGGTTTGGATTGTGACGA+GGG | 0.587614 | 5_2:-15413104 | None:intergenic |
| CAACTTCTCTAAATGGCTAG+GGG | 0.592153 | 5_2:+15416216 | Msa0759660:CDS |
| GAGGGGACGTGCTGCTGCTG+CGG | 0.594798 | 5_2:-15413086 | None:intergenic |
| GACCCGGGAAGGGGAAGATG+AGG | 0.595589 | 5_2:+15413665 | Msa0759660:CDS |
| CAGGCGATATATATTGCGAA+AGG | 0.595643 | 5_2:+15413690 | Msa0759660:CDS |
| GGATCTGGAGGAAATGGCAT+AGG | 0.595709 | 5_2:+15413413 | Msa0759660:CDS |
| CTTCTGCCATCAAGGCTGCA+GGG | 0.598308 | 5_2:+15416143 | Msa0759660:CDS |
| TGCCAAGACTGCTAAGAGGA+TGG | 0.598875 | 5_2:+15414092 | Msa0759660:CDS |
| AGGCGATATATATTGCGAAA+GGG | 0.599051 | 5_2:+15413691 | Msa0759660:CDS |
| TGGTGTTGAGATTACTAATG+TGG | 0.599446 | 5_2:+15413774 | Msa0759660:CDS |
| GTAGAATGTTTGCTCCGACT+AGG | 0.599712 | 5_2:+15413392 | Msa0759660:CDS |
| CCACGAGCAAGAACCAATGA+AGG | 0.600012 | 5_2:-15413496 | None:intergenic |
| CCAACAACAAGAGGAAACTC+AGG | 0.606988 | 5_2:-15413538 | None:intergenic |
| GTGCATACCTTACTTGGCCA+GGG | 0.608278 | 5_2:-15416453 | None:intergenic |
| CATTTCCTCCAGATCCTAGT+CGG | 0.610904 | 5_2:-15413406 | None:intergenic |
| AGGGTTCGGAGAAGAAGAAA+GGG | 0.618510 | 5_2:+15413905 | Msa0759660:CDS |
| AGGAGTAGAGAAAACTAAGG+AGG | 0.635842 | 5_2:+15413573 | Msa0759660:CDS |
| TCGGTACCATAAACAATCAA+CGG | 0.638403 | 5_2:-15413715 | None:intergenic |
| TGGTACCGAAGGGGCGAAGG+CGG | 0.639215 | 5_2:+15413729 | Msa0759660:CDS |
| TAGGATTATTAATAGTGATG+AGG | 0.640452 | 5_2:+15413969 | Msa0759660:CDS |
| GATTAAGAAGGATGTTAAGA+GGG | 0.643145 | 5_2:+15414011 | Msa0759660:CDS |
| GTCCCACCACCTGCAACACG+AGG | 0.646810 | 5_2:-15413325 | None:intergenic |
| ATAGCCTTGGGATTAGACCC+GGG | 0.646880 | 5_2:+15413650 | Msa0759660:CDS |
| TGTGTGTCGTGTGAGAAGAA+GGG | 0.647420 | 5_2:-15412998 | None:intergenic |
| TTGCTCCGACTAGGATCTGG+AGG | 0.651327 | 5_2:+15413401 | Msa0759660:CDS |
| TTGAGATTACTAATGTGGAG+AGG | 0.654222 | 5_2:+15413779 | Msa0759660:CDS |
| GGTACCCCATGATTCAGCTG+AGG | 0.655914 | 5_2:-15413281 | None:intergenic |
| AATGGTGGTTGGTGAATCGG+CGG | 0.669878 | 5_2:-15413140 | None:intergenic |
| CAAAAGCAGCCTGACCAGCA+CGG | 0.671346 | 5_2:-15413351 | None:intergenic |
| ACATTAGTAATCTCAACACC+AGG | 0.671385 | 5_2:-15413772 | None:intergenic |
| GATTGTTTATGGTACCGAAG+GGG | 0.679160 | 5_2:+15413720 | Msa0759660:CDS |
| AGGGTTTGGATTGTGACGAG+GGG | 0.685612 | 5_2:-15413103 | None:intergenic |
| TTTGGTAACATGTGTCGTGG+TGG | 0.688796 | 5_2:+15413370 | Msa0759660:CDS |
| AAGCAGCCTGACCAGCACGG+TGG | 0.701528 | 5_2:-15413348 | None:intergenic |
| ATGAGGTGCAGAGTGTTGTG+AGG | 0.702312 | 5_2:+15413986 | Msa0759660:CDS |
| GAAAGCTTGGTATAACACCA+TGG | 0.705586 | 5_2:+15416165 | Msa0759660:CDS |
| TTGAAGCACGCATGACATCG+GGG | 0.725773 | 5_2:-15413168 | None:intergenic |
| CAAACCTCAGCTGAATCATG+GGG | 0.734702 | 5_2:+15413277 | Msa0759660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAATAGTTTTTGATT+TGG | + | chr5_2:15414642-15414661 | Msa0759660:intron | 10.0% |
| !!! | TAATTAATAGTTTTTGATTT+GGG | + | chr5_2:15414643-15414662 | Msa0759660:intron | 10.0% |
| !!! | TACAAAATGTTTTTAAAATA+TGG | - | chr5_2:15415104-15415123 | None:intergenic | 10.0% |
| !! | CATACTAAATTATTAAAGTT+TGG | - | chr5_2:15414586-15414605 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATATGGTCAATT+TGG | - | chr5_2:15415095-15415114 | None:intergenic | 15.0% |
| !!! | CAAATTTCTAAATTGATTTA+GGG | + | chr5_2:15415131-15415150 | Msa0759660:intron | 15.0% |
| !!! | TCTTTTTTTCTTTTGTTTTA+CGG | + | chr5_2:15415218-15415237 | Msa0759660:intron | 15.0% |
| !!! | ATTTAAATTTGAGATTGTAA+TGG | - | chr5_2:15415465-15415484 | None:intergenic | 15.0% |
| !!! | AACTTAGTTTTATTTTAATC+TGG | - | chr5_2:15415507-15415526 | None:intergenic | 15.0% |
| !!! | CTACTATTTTATTTAACAAT+TGG | + | chr5_2:15415624-15415643 | Msa0759660:intron | 15.0% |
| !!! | AGTTTAAGACAATAAATAAA+TGG | - | chr5_2:15416079-15416098 | None:intergenic | 15.0% |
| !!! | TTATCTGAACTAAATAATTT+TGG | + | chr5_2:15416288-15416307 | Msa0759660:three_prime_UTR | 15.0% |
| !! | ATAACATTAAGATTCTTAAG+AGG | - | chr5_2:15414054-15414073 | None:intergenic | 20.0% |
| !!! | TTGATCATTTTATGTTGATT+TGG | + | chr5_2:15414344-15414363 | Msa0759660:intron | 20.0% |
| !!! | ATTAAAGCACTAAATCTAAA+TGG | - | chr5_2:15414460-15414479 | None:intergenic | 20.0% |
| !! | TTAGATTTAGTGCTTTAATT+AGG | + | chr5_2:15414461-15414480 | Msa0759660:intron | 20.0% |
| !!! | ACAATCTCAACTTTTATATA+AGG | - | chr5_2:15414500-15414519 | None:intergenic | 20.0% |
| !!! | ATAATTCATAGCTTTTGATT+TGG | + | chr5_2:15414790-15414809 | Msa0759660:intron | 20.0% |
| !!! | TAATTCATAGCTTTTGATTT+GGG | + | chr5_2:15414791-15414810 | Msa0759660:intron | 20.0% |
| !! | TTTCAACTAAAATCAAATAG+CGG | - | chr5_2:15415068-15415087 | None:intergenic | 20.0% |
| !! | CCTAAATCAATTTAGAAATT+TGG | - | chr5_2:15415133-15415152 | None:intergenic | 20.0% |
| !!! | CCAAATTTCTAAATTGATTT+AGG | + | chr5_2:15415130-15415149 | Msa0759660:intron | 20.0% |
| !! | GTAAAACAAAAGAAAAAAAG+AGG | - | chr5_2:15415219-15415238 | None:intergenic | 20.0% |
| !!! | AATCTGGTTTGTATAATTTA+GGG | - | chr5_2:15415491-15415510 | None:intergenic | 20.0% |
| !!! | TAATCTGGTTTGTATAATTT+AGG | - | chr5_2:15415492-15415511 | None:intergenic | 20.0% |
| !! | TCTTGCATGATAAATAATAA+GGG | - | chr5_2:15415660-15415679 | None:intergenic | 20.0% |
| !! | TTCTTGCATGATAAATAATA+AGG | - | chr5_2:15415661-15415680 | None:intergenic | 20.0% |
| !!! | AAGTATTTTTTAGTTGTAAG+TGG | + | chr5_2:15415680-15415699 | Msa0759660:intron | 20.0% |
| !! | TAACCACACAAAAAAAATTA+TGG | - | chr5_2:15416271-15416290 | None:intergenic | 20.0% |
| !! | AATGTGTAATAATCTTAAAC+CGG | - | chr5_2:15416328-15416347 | None:intergenic | 20.0% |
| ! | TAGGATTATTAATAGTGATG+AGG | + | chr5_2:15413969-15413988 | Msa0759660:CDS | 25.0% |
| !!! | AAATTGATTTAGGGCATTTT+AGG | + | chr5_2:15415140-15415159 | Msa0759660:intron | 25.0% |
| !!! | AATTGATTTAGGGCATTTTA+GGG | + | chr5_2:15415141-15415160 | Msa0759660:intron | 25.0% |
| !!! | GTTCTCTATCTTTTGTTTTT+TGG | + | chr5_2:15415271-15415290 | Msa0759660:intron | 25.0% |
| ! | CATCTTAAGTTATCAAAACT+TGG | + | chr5_2:15415527-15415546 | Msa0759660:intron | 25.0% |
| ! | ATAAAATAGTAGAGTAAACC+AGG | - | chr5_2:15415616-15415635 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTTTGCAGAATAA+TGG | + | chr5_2:15415948-15415967 | Msa0759660:intron | 25.0% |
| ! | AATTTGACAACTTCTCTAAA+TGG | + | chr5_2:15416209-15416228 | Msa0759660:CDS | 25.0% |
| ! | AATTATGGCGAACATATAAA+TGG | - | chr5_2:15416256-15416275 | None:intergenic | 25.0% |
| !! | AGTTTTTGGAAATGTTGGAA+TGG | - | chr5_2:15413219-15413238 | None:intergenic | 30.0% |
| AGAAATTGGATTCGATCTAT+GGG | + | chr5_2:15413872-15413891 | Msa0759660:CDS | 30.0% | |
| TGGTGAATTCTGATTTAACT+AGG | + | chr5_2:15413950-15413969 | Msa0759660:CDS | 30.0% | |
| CTCTTAACATCCTTCTTAAT+CGG | - | chr5_2:15414012-15414031 | None:intergenic | 30.0% | |
| GATTAAGAAGGATGTTAAGA+GGG | + | chr5_2:15414011-15414030 | Msa0759660:CDS | 30.0% | |
| TTTGATTCTATCGTGAAGAT+AGG | + | chr5_2:15414533-15414552 | Msa0759660:intron | 30.0% | |
| TTAACTTCATGTGTAAGTGA+GGG | + | chr5_2:15414693-15414712 | Msa0759660:intron | 30.0% | |
| TTAAGACAATACAAGTGCAA+AGG | - | chr5_2:15414719-15414738 | None:intergenic | 30.0% | |
| TTAACTTCATGTGTAAGTGA+GGG | + | chr5_2:15414693-15414712 | Msa0759660:intron | 30.0% | |
| GTAATCATAGTAGTCAATAG+TGG | + | chr5_2:15414935-15414954 | Msa0759660:intron | 30.0% | |
| ! | ACCAAATAGACTTTGTTGTA+TGG | + | chr5_2:15415172-15415191 | Msa0759660:intron | 30.0% |
| ACCATACAACAAAGTCTATT+TGG | - | chr5_2:15415176-15415195 | None:intergenic | 30.0% | |
| ! | TTTGTTTATACTCCCACTTT+TGG | + | chr5_2:15415384-15415403 | Msa0759660:intron | 30.0% |
| !! | TTGTTTATACTCCCACTTTT+GGG | + | chr5_2:15415385-15415404 | Msa0759660:intron | 30.0% |
| ! | TTAGTTGTAAGTGGATTTGA+TGG | + | chr5_2:15415689-15415708 | Msa0759660:intron | 30.0% |
| AATTAATAACTGCAATTCCC+AGG | - | chr5_2:15415730-15415749 | None:intergenic | 30.0% | |
| !!! | AGTGGATGAGTTGATTTTTT+GGG | + | chr5_2:15415802-15415821 | Msa0759660:intron | 30.0% |
| !!! | GTTGATTTTTTGGGGAATAA+TGG | + | chr5_2:15415811-15415830 | Msa0759660:intron | 30.0% |
| !!! | GCAGAATAATGGATGAATTT+TGG | + | chr5_2:15415959-15415978 | Msa0759660:intron | 30.0% |
| !!! | TCGCCATAATTTTTTTTGTG+TGG | + | chr5_2:15416265-15416284 | Msa0759660:three_prime_UTR | 30.0% |
| !!! | AGAAGGGTTTGTTTTGTGAT+GGG | - | chr5_2:15412985-15413004 | None:intergenic | 35.0% |
| !!! | AAGAAGGGTTTGTTTTGTGA+TGG | - | chr5_2:15412986-15413005 | None:intergenic | 35.0% |
| !! | TCTGGAGTTTTTGGAAATGT+TGG | - | chr5_2:15413224-15413243 | None:intergenic | 35.0% |
| TGAAGGAGTAGAGAAAACTA+AGG | + | chr5_2:15413570-15413589 | Msa0759660:CDS | 35.0% | |
| GAAAACTAAGGAGGCTATTA+AGG | + | chr5_2:15413582-15413601 | Msa0759660:CDS | 35.0% | |
| !!! | ATTAAGGTTTTGAAGCAGGT+TGG | + | chr5_2:15413598-15413617 | Msa0759660:CDS | 35.0% |
| AGGCGATATATATTGCGAAA+GGG | + | chr5_2:15413691-15413710 | Msa0759660:CDS | 35.0% | |
| TCGGTACCATAAACAATCAA+CGG | - | chr5_2:15413718-15413737 | None:intergenic | 35.0% | |
| ! | TTGATTGTTTATGGTACCGA+AGG | + | chr5_2:15413718-15413737 | Msa0759660:CDS | 35.0% |
| ! | TGATTGTTTATGGTACCGAA+GGG | + | chr5_2:15413719-15413738 | Msa0759660:CDS | 35.0% |
| !! | AAGGCTTTTAGGAATATTCC+TGG | + | chr5_2:15413754-15413773 | Msa0759660:CDS | 35.0% |
| ACATTAGTAATCTCAACACC+AGG | - | chr5_2:15413775-15413794 | None:intergenic | 35.0% | |
| ! | TGGTGTTGAGATTACTAATG+TGG | + | chr5_2:15413774-15413793 | Msa0759660:CDS | 35.0% |
| TTGAGATTACTAATGTGGAG+AGG | + | chr5_2:15413779-15413798 | Msa0759660:CDS | 35.0% | |
| ATTTGGGTAGGTTTGTGATT+TGG | + | chr5_2:15413833-15413852 | Msa0759660:CDS | 35.0% | |
| ! | GTTTGTGATTTGGACTAAGT+CGG | + | chr5_2:15413843-15413862 | Msa0759660:CDS | 35.0% |
| !! | TAAGTCGGCTTTTGAGAAAT+TGG | + | chr5_2:15413858-15413877 | Msa0759660:CDS | 35.0% |
| GAGAAATTGGATTCGATCTA+TGG | + | chr5_2:15413871-15413890 | Msa0759660:CDS | 35.0% | |
| !! | AGAAAGGGTATGTTTTACCT+AGG | + | chr5_2:15413920-15413939 | Msa0759660:CDS | 35.0% |
| !! | GAAAGGGTATGTTTTACCTA+GGG | + | chr5_2:15413921-15413940 | Msa0759660:CDS | 35.0% |
| CGATTAAGAAGGATGTTAAG+AGG | + | chr5_2:15414010-15414029 | Msa0759660:CDS | 35.0% | |
| CATTCAAAAATCGAGCACAA+TGG | - | chr5_2:15414207-15414226 | None:intergenic | 35.0% | |
| !! | GTTGATTTGGTATTGTTCCT+AGG | + | chr5_2:15414357-15414376 | Msa0759660:intron | 35.0% |
| ACTAGAACATACATCTCCTT+TGG | - | chr5_2:15414389-15414408 | None:intergenic | 35.0% | |
| GATTTGAATTGTGATCTTGC+TGG | + | chr5_2:15414417-15414436 | Msa0759660:intron | 35.0% | |
| ATTCTATCGTGAAGATAGGA+CGG | + | chr5_2:15414537-15414556 | Msa0759660:intron | 35.0% | |
| ! | TGATTTGGGTTTGTAGTGAT+TGG | + | chr5_2:15414657-15414676 | Msa0759660:intron | 35.0% |
| GTTAACTTCATGTGTAAGTG+AGG | + | chr5_2:15414692-15414711 | Msa0759660:intron | 35.0% | |
| ! | TGATTTGGGTTTGTAGTGAT+TGG | + | chr5_2:15414657-15414676 | Msa0759660:intron | 35.0% |
| GTTAACTTCATGTGTAAGTG+AGG | + | chr5_2:15414692-15414711 | Msa0759660:intron | 35.0% | |
| AAATCAAATAGCGGCTAAAG+CGG | - | chr5_2:15415059-15415078 | None:intergenic | 35.0% | |
| !! | TGTTTATACTCCCACTTTTG+GGG | + | chr5_2:15415386-15415405 | Msa0759660:intron | 35.0% |
| ACATTCATAGTAGTCGATCT+CGG | - | chr5_2:15415423-15415442 | None:intergenic | 35.0% | |
| AGTAAAGAGCAGAATATGCA+AGG | - | chr5_2:15415575-15415594 | None:intergenic | 35.0% | |
| TAAATAGTGACTGATCTTCC+TGG | + | chr5_2:15415595-15415614 | Msa0759660:intron | 35.0% | |
| !!! | GAGTGGATGAGTTGATTTTT+TGG | + | chr5_2:15415801-15415820 | Msa0759660:intron | 35.0% |
| !!! | GTGGATGAGTTGATTTTTTG+GGG | + | chr5_2:15415803-15415822 | Msa0759660:intron | 35.0% |
| ! | AGAAAGAAGCATGGAACATA+TGG | - | chr5_2:15415859-15415878 | None:intergenic | 35.0% |
| AACACAATCAGAAAGAAGCA+TGG | - | chr5_2:15415868-15415887 | None:intergenic | 35.0% | |
| ACACGGTTGAATGTCTAAAT+TGG | - | chr5_2:15415908-15415927 | None:intergenic | 35.0% | |
| TCCACTCATCTAAATACACA+CGG | - | chr5_2:15415925-15415944 | None:intergenic | 35.0% | |
| ! | ATAATCAGAATCTGAGACCA+TGG | - | chr5_2:15416185-15416204 | None:intergenic | 35.0% |
| ACAACTTCTCTAAATGGCTA+GGG | + | chr5_2:15416215-15416234 | Msa0759660:CDS | 35.0% | |
| !!! | TTTGGTTTTTTGTCGTTCTC+CGG | + | chr5_2:15416306-15416325 | Msa0759660:three_prime_UTR | 35.0% |
| !! | AATTTGTTATATGCTGTCCC+TGG | + | chr5_2:15416436-15416455 | Msa0759660:three_prime_UTR | 35.0% |
| !! | GAGATGAAGAGAGTGTGTTT+TGG | - | chr5_2:15412962-15412981 | None:intergenic | 40.0% |
| !!! | GAAGGGTTTGTTTTGTGATG+GGG | - | chr5_2:15412984-15413003 | None:intergenic | 40.0% |
| ! | AACACTAGCTAGGGTTTTTG+CGG | - | chr5_2:15413042-15413061 | None:intergenic | 40.0% |
| CACAATCCAAACCCTAGAAT+CGG | + | chr5_2:15413111-15413130 | Msa0759660:CDS | 40.0% | |
| !! | ACATTTCCGATTCTAGGGTT+TGG | - | chr5_2:15413120-15413139 | None:intergenic | 40.0% |
| !! | GTAAGGTTGTCTGGAGTTTT+TGG | - | chr5_2:15413233-15413252 | None:intergenic | 40.0% |
| AGCTTCTGCTATTCCTTCAT+TGG | + | chr5_2:15413483-15413502 | Msa0759660:CDS | 40.0% | |
| AGGAGTAGAGAAAACTAAGG+AGG | + | chr5_2:15413573-15413592 | Msa0759660:CDS | 40.0% | |
| !!! | GGCTATTAAGGTTTTGAAGC+AGG | + | chr5_2:15413594-15413613 | Msa0759660:CDS | 40.0% |
| ! | TGCTTTTGCTGATGCTGAAA+AGG | + | chr5_2:15413621-15413640 | Msa0759660:CDS | 40.0% |
| CAGGCGATATATATTGCGAA+AGG | + | chr5_2:15413690-15413709 | Msa0759660:CDS | 40.0% | |
| ! | AAGGGACCGTTGATTGTTTA+TGG | + | chr5_2:15413709-15413728 | Msa0759660:CDS | 40.0% |
| ! | GATTGTTTATGGTACCGAAG+GGG | + | chr5_2:15413720-15413739 | Msa0759660:CDS | 40.0% |
| !!! | GAATCTTTTGAAGCTTGCAC+CGG | + | chr5_2:15413804-15413823 | Msa0759660:CDS | 40.0% |
| !!! | AATCTTTTGAAGCTTGCACC+GGG | + | chr5_2:15413805-15413824 | Msa0759660:CDS | 40.0% |
| ! | ATCTATGGGACGTTTGCTAA+GGG | + | chr5_2:15413886-15413905 | Msa0759660:CDS | 40.0% |
| ! | TGTTTTACCTAGGGCTAAGA+TGG | + | chr5_2:15413930-15413949 | Msa0759660:CDS | 40.0% |
| TGAAAGGGTTAAGGCTAAGA+AGG | + | chr5_2:15414131-15414150 | Msa0759660:CDS | 40.0% | |
| GAAGAGAAAGACTGTCTCTA+AGG | + | chr5_2:15414167-15414186 | Msa0759660:CDS | 40.0% | |
| TTCTATCGTGAAGATAGGAC+GGG | + | chr5_2:15414538-15414557 | Msa0759660:intron | 40.0% | |
| CATCCACTCATCTAAACACA+CGG | - | chr5_2:15415790-15415809 | None:intergenic | 40.0% | |
| !!! | GGGGAATAATGGATGACTTT+TGG | + | chr5_2:15415822-15415841 | Msa0759660:intron | 40.0% |
| GAAGCATGGAACATATGGAA+CGG | - | chr5_2:15415854-15415873 | None:intergenic | 40.0% | |
| ACCGTGTGTATTTAGATGAG+TGG | + | chr5_2:15415921-15415940 | Msa0759660:intron | 40.0% | |
| AGAAAGAAGCAGGGAACATA+TGG | - | chr5_2:15415996-15416015 | None:intergenic | 40.0% | |
| AACACAGTCAGAAAGAAGCA+GGG | - | chr5_2:15416005-15416024 | None:intergenic | 40.0% | |
| AAACACAGTCAGAAAGAAGC+AGG | - | chr5_2:15416006-15416025 | None:intergenic | 40.0% | |
| GAAAGCTTGGTATAACACCA+TGG | + | chr5_2:15416165-15416184 | Msa0759660:CDS | 40.0% | |
| GACAACTTCTCTAAATGGCT+AGG | + | chr5_2:15416214-15416233 | Msa0759660:CDS | 40.0% | |
| CAACTTCTCTAAATGGCTAG+GGG | + | chr5_2:15416216-15416235 | Msa0759660:CDS | 40.0% | |
| TACACATTATGCAGACAGCA+TGG | + | chr5_2:15416340-15416359 | Msa0759660:three_prime_UTR | 40.0% | |
| TAAGGTATGCACCTAGCTAT+CGG | + | chr5_2:15416464-15416483 | Msa0759660:three_prime_UTR | 40.0% | |
| TGTGTGTCGTGTGAGAAGAA+GGG | - | chr5_2:15413001-15413020 | None:intergenic | 45.0% | |
| ! | ACACTAGCTAGGGTTTTTGC+GGG | - | chr5_2:15413041-15413060 | None:intergenic | 45.0% |
| GGAGGAAGAAACACTAGCTA+GGG | - | chr5_2:15413051-15413070 | None:intergenic | 45.0% | |
| TAGGGTTTGGATTGTGACGA+GGG | - | chr5_2:15413107-15413126 | None:intergenic | 45.0% | |
| !! | TGGAATGGTGGTTGGTGAAT+CGG | - | chr5_2:15413146-15413165 | None:intergenic | 45.0% |
| ATTGAAGCACGCATGACATC+GGG | - | chr5_2:15413172-15413191 | None:intergenic | 45.0% | |
| GATTGAAGCACGCATGACAT+CGG | - | chr5_2:15413173-15413192 | None:intergenic | 45.0% | |
| ACCAAACCTCAGCTGAATCA+TGG | + | chr5_2:15413275-15413294 | Msa0759660:CDS | 45.0% | |
| CCAAACCTCAGCTGAATCAT+GGG | + | chr5_2:15413276-15413295 | Msa0759660:CDS | 45.0% | |
| CAAACCTCAGCTGAATCATG+GGG | + | chr5_2:15413277-15413296 | Msa0759660:CDS | 45.0% | |
| AATACGTGAAACAGCACGTC+CGG | - | chr5_2:15413305-15413324 | None:intergenic | 45.0% | |
| !! | GCTTTTGGTAACATGTGTCG+TGG | + | chr5_2:15413367-15413386 | Msa0759660:CDS | 45.0% |
| ! | TTTGGTAACATGTGTCGTGG+TGG | + | chr5_2:15413370-15413389 | Msa0759660:CDS | 45.0% |
| GTAGAATGTTTGCTCCGACT+AGG | + | chr5_2:15413392-15413411 | Msa0759660:CDS | 45.0% | |
| CATTTCCTCCAGATCCTAGT+CGG | - | chr5_2:15413409-15413428 | None:intergenic | 45.0% | |
| CCAACAACAAGAGGAAACTC+AGG | - | chr5_2:15413541-15413560 | None:intergenic | 45.0% | |
| ! | CCTGAGTTTCCTCTTGTTGT+TGG | + | chr5_2:15413538-15413557 | Msa0759660:CDS | 45.0% |
| AAAAGGCCAAGGATAGCCTT+GGG | + | chr5_2:15413638-15413657 | Msa0759660:CDS | 45.0% | |
| TCTAATCCCAAGGCTATCCT+TGG | - | chr5_2:15413647-15413666 | None:intergenic | 45.0% | |
| ! | GATCTATGGGACGTTTGCTA+AGG | + | chr5_2:15413885-15413904 | Msa0759660:CDS | 45.0% |
| AAGGGTTCGGAGAAGAAGAA+AGG | + | chr5_2:15413904-15413923 | Msa0759660:CDS | 45.0% | |
| AGGGTTCGGAGAAGAAGAAA+GGG | + | chr5_2:15413905-15413924 | Msa0759660:CDS | 45.0% | |
| GAATTCACCATCTTAGCCCT+AGG | - | chr5_2:15413940-15413959 | None:intergenic | 45.0% | |
| TGTTGTGAGGCCGATTAAGA+AGG | + | chr5_2:15413999-15414018 | Msa0759660:CDS | 45.0% | |
| CTCTTAGCAGTCTTGGCATA+AGG | - | chr5_2:15414090-15414109 | None:intergenic | 45.0% | |
| CTTATGCCAAGACTGCTAAG+AGG | + | chr5_2:15414088-15414107 | Msa0759660:CDS | 45.0% | |
| ! | TTTGCTTGCTGAGGCTGAAA+GGG | + | chr5_2:15414116-15414135 | Msa0759660:CDS | 45.0% |
| TGTTCCTAGGATTCTGCCAA+AGG | + | chr5_2:15414370-15414389 | Msa0759660:intron | 45.0% | |
| ATCTCCTTTGGCAGAATCCT+AGG | - | chr5_2:15414377-15414396 | None:intergenic | 45.0% | |
| TCTATCGTGAAGATAGGACG+GGG | + | chr5_2:15414539-15414558 | Msa0759660:intron | 45.0% | |
| TAGTAGTCGATCTCGGAAAG+CGG | - | chr5_2:15415416-15415435 | None:intergenic | 45.0% | |
| ! | AGTGGATTTGATGGCAGCTT+TGG | + | chr5_2:15415698-15415717 | Msa0759660:intron | 45.0% |
| ! | TGGCAGCTTTGGTAAATTCC+TGG | + | chr5_2:15415709-15415728 | Msa0759660:intron | 45.0% |
| ! | GGCAGCTTTGGTAAATTCCT+GGG | + | chr5_2:15415710-15415729 | Msa0759660:intron | 45.0% |
| CAACCGTGTGTTTAGATGAG+TGG | + | chr5_2:15415784-15415803 | Msa0759660:intron | 45.0% | |
| GAAGCAGGGAACATATGGAA+TGG | - | chr5_2:15415991-15416010 | None:intergenic | 45.0% | |
| TGTGTTCCTTTCCCTCTTTC+AGG | + | chr5_2:15416114-15416133 | Msa0759660:intron | 45.0% | |
| AGAAGCTTCCTCCTGAAAGA+GGG | - | chr5_2:15416128-15416147 | None:intergenic | 45.0% | |
| AGCTAGGTGCATACCTTACT+TGG | - | chr5_2:15416462-15416481 | None:intergenic | 45.0% | |
| AAGGTATGCACCTAGCTATC+GGG | + | chr5_2:15416465-15416484 | Msa0759660:three_prime_UTR | 45.0% | |
| GTGTGTGTCGTGTGAGAAGA+AGG | - | chr5_2:15413002-15413021 | None:intergenic | 50.0% | |
| GGGAGGAAGAAACACTAGCT+AGG | - | chr5_2:15413052-15413071 | None:intergenic | 50.0% | |
| TTTCTTCCTCCCTCCACCAA+TGG | + | chr5_2:15413060-15413079 | Msa0759660:exon | 50.0% | |
| AGGGTTTGGATTGTGACGAG+GGG | - | chr5_2:15413106-15413125 | None:intergenic | 50.0% | |
| CTAGGGTTTGGATTGTGACG+AGG | - | chr5_2:15413108-15413127 | None:intergenic | 50.0% | |
| GGCGGACATTTCCGATTCTA+GGG | - | chr5_2:15413125-15413144 | None:intergenic | 50.0% | |
| !! | AATGGTGGTTGGTGAATCGG+CGG | - | chr5_2:15413143-15413162 | None:intergenic | 50.0% |
| CATGACATCGGGGATTGGAA+TGG | - | chr5_2:15413161-15413180 | None:intergenic | 50.0% | |
| TTGAAGCACGCATGACATCG+GGG | - | chr5_2:15413171-15413190 | None:intergenic | 50.0% | |
| CGAAGTTGACGATGTCAGGA+CGG | - | chr5_2:15413195-15413214 | None:intergenic | 50.0% | |
| TGGACGAAGTTGACGATGTC+AGG | - | chr5_2:15413199-15413218 | None:intergenic | 50.0% | |
| !! | AGGTTTGGTGACCAGCTTTC+CGG | - | chr5_2:15413264-15413283 | None:intergenic | 50.0% |
| CCCATGATTCAGCTGAGGTT+TGG | - | chr5_2:15413279-15413298 | None:intergenic | 50.0% | |
| TCAGCTGAATCATGGGGTAC+CGG | + | chr5_2:15413283-15413302 | Msa0759660:CDS | 50.0% | |
| TCACGTATTCCTCGTGTTGC+AGG | + | chr5_2:15413316-15413335 | Msa0759660:CDS | 50.0% | |
| TGTTTGCTCCGACTAGGATC+TGG | + | chr5_2:15413398-15413417 | Msa0759660:CDS | 50.0% | |
| CGACTAGGATCTGGAGGAAA+TGG | + | chr5_2:15413407-15413426 | Msa0759660:CDS | 50.0% | |
| GGATCTGGAGGAAATGGCAT+AGG | + | chr5_2:15413413-15413432 | Msa0759660:CDS | 50.0% | |
| CCACGAGCAAGAACCAATGA+AGG | - | chr5_2:15413499-15413518 | None:intergenic | 50.0% | |
| !! | CCTTCATTGGTTCTTGCTCG+TGG | + | chr5_2:15413496-15413515 | Msa0759660:CDS | 50.0% |
| GCAGCATCACCAACAACAAG+AGG | - | chr5_2:15413550-15413569 | None:intergenic | 50.0% | |
| !! | GTTGTTGGTGATGCTGCTGA+AGG | + | chr5_2:15413553-15413572 | Msa0759660:CDS | 50.0% |
| TGCTGATGCTGAAAAGGCCA+AGG | + | chr5_2:15413627-15413646 | Msa0759660:CDS | 50.0% | |
| GAAAAGGCCAAGGATAGCCT+TGG | + | chr5_2:15413637-15413656 | Msa0759660:CDS | 50.0% | |
| ! | GATAGCCTTGGGATTAGACC+CGG | + | chr5_2:15413649-15413668 | Msa0759660:CDS | 50.0% |
| ! | ATAGCCTTGGGATTAGACCC+GGG | + | chr5_2:15413650-15413669 | Msa0759660:CDS | 50.0% |
| ! | CGAAGGCGGTTAAGGCTTTT+AGG | + | chr5_2:15413743-15413762 | Msa0759660:CDS | 50.0% |
| !!! | TTTTGAAGCTTGCACCGGGT+GGG | + | chr5_2:15413809-15413828 | Msa0759660:CDS | 50.0% |
| ! | TGGGACGTTTGCTAAGGGTT+CGG | + | chr5_2:15413891-15413910 | Msa0759660:CDS | 50.0% |
| !! | ATGAGGTGCAGAGTGTTGTG+AGG | + | chr5_2:15413986-15414005 | Msa0759660:CDS | 50.0% |
| TGCCAAGACTGCTAAGAGGA+TGG | + | chr5_2:15414092-15414111 | Msa0759660:CDS | 50.0% | |
| AGCCATCCTCTTAGCAGTCT+TGG | - | chr5_2:15414097-15414116 | None:intergenic | 50.0% | |
| ! | CTTTGCTTGCTGAGGCTGAA+AGG | + | chr5_2:15414115-15414134 | Msa0759660:CDS | 50.0% |
| TGCTGAGGCTGAAAGGGTTA+AGG | + | chr5_2:15414122-15414141 | Msa0759660:CDS | 50.0% | |
| CGGGGATCTCAATTGCATGA+AGG | + | chr5_2:15414557-15414576 | Msa0759660:intron | 50.0% | |
| GTTCCTTTCCCTCTTTCAGG+AGG | + | chr5_2:15416117-15416136 | Msa0759660:intron | 50.0% | |
| CTTCCTCCTGAAAGAGGGAA+AGG | - | chr5_2:15416123-15416142 | None:intergenic | 50.0% | |
| CAGAAGCTTCCTCCTGAAAG+AGG | - | chr5_2:15416129-15416148 | None:intergenic | 50.0% | |
| GTGCATACCTTACTTGGCCA+GGG | - | chr5_2:15416456-15416475 | None:intergenic | 50.0% | |
| CGGCGGACATTTCCGATTCT+AGG | - | chr5_2:15413126-15413145 | None:intergenic | 55.0% | |
| TCGGGGATTGGAATGGTGGT+TGG | - | chr5_2:15413154-15413173 | None:intergenic | 55.0% | |
| GACATCGGGGATTGGAATGG+TGG | - | chr5_2:15413158-15413177 | None:intergenic | 55.0% | |
| GGTACCCCATGATTCAGCTG+AGG | - | chr5_2:15413284-15413303 | None:intergenic | 55.0% | |
| CGTATTCCTCGTGTTGCAGG+TGG | + | chr5_2:15413319-15413338 | Msa0759660:CDS | 55.0% | |
| ATTCCTCGTGTTGCAGGTGG+TGG | + | chr5_2:15413322-15413341 | Msa0759660:CDS | 55.0% | |
| TTCCTCGTGTTGCAGGTGGT+GGG | + | chr5_2:15413323-15413342 | Msa0759660:CDS | 55.0% | |
| CAAAAGCAGCCTGACCAGCA+CGG | - | chr5_2:15413354-15413373 | None:intergenic | 55.0% | |
| TTGCTCCGACTAGGATCTGG+AGG | + | chr5_2:15413401-15413420 | Msa0759660:CDS | 55.0% | |
| TGGTTCTTGCTCGTGGTCAC+AGG | + | chr5_2:15413503-15413522 | Msa0759660:CDS | 55.0% | |
| CTTGGGATTAGACCCGGGAA+GGG | + | chr5_2:15413655-15413674 | Msa0759660:CDS | 55.0% | |
| TTGGGATTAGACCCGGGAAG+GGG | + | chr5_2:15413656-15413675 | Msa0759660:CDS | 55.0% | |
| TTCCTCATCTTCCCCTTCCC+GGG | - | chr5_2:15413670-15413689 | None:intergenic | 55.0% | |
| GTTCCTCATCTTCCCCTTCC+CGG | - | chr5_2:15413671-15413690 | None:intergenic | 55.0% | |
| GGAAGGGGAAGATGAGGAAC+AGG | + | chr5_2:15413671-15413690 | Msa0759660:CDS | 55.0% | |
| ! | TTATGGTACCGAAGGGGCGA+AGG | + | chr5_2:15413726-15413745 | Msa0759660:CDS | 55.0% |
| !!! | CTTTTGAAGCTTGCACCGGG+TGG | + | chr5_2:15413808-15413827 | Msa0759660:CDS | 55.0% |
| AACCTACCCAAATGCCCACC+CGG | - | chr5_2:15413826-15413845 | None:intergenic | 55.0% | |
| ! | GAGGATGGCTTTGCTTGCTG+AGG | + | chr5_2:15414107-15414126 | Msa0759660:CDS | 55.0% |
| CTTATTCCGCACCGCTACGA+CGG | - | chr5_2:15414983-15415002 | None:intergenic | 55.0% | |
| AGCGGTGCGGAATAAGACAG+CGG | + | chr5_2:15414987-15415006 | Msa0759660:intron | 55.0% | |
| CAGCTGCTATAGCAGCGTAG+TGG | + | chr5_2:15415016-15415035 | Msa0759660:intron | 55.0% | |
| ! | GCTATAGCAGCGTAGTGGAG+CGG | + | chr5_2:15415021-15415040 | Msa0759660:intron | 55.0% |
| AAGCGGCTGACCCCAAAAGT+GGG | - | chr5_2:15415399-15415418 | None:intergenic | 55.0% | |
| AAAGCGGCTGACCCCAAAAG+TGG | - | chr5_2:15415400-15415419 | None:intergenic | 55.0% | |
| GGAGGAAGCTTCTGCCATCA+AGG | + | chr5_2:15416135-15416154 | Msa0759660:intron | 55.0% | |
| CTTCTGCCATCAAGGCTGCA+GGG | + | chr5_2:15416143-15416162 | Msa0759660:CDS | 55.0% | |
| AGCTTTCCCTGCAGCCTTGA+TGG | - | chr5_2:15416152-15416171 | None:intergenic | 55.0% | |
| TCAAGGCTGCAGGGAAAGCT+TGG | + | chr5_2:15416152-15416171 | Msa0759660:CDS | 55.0% | |
| ATGCTGTCCCTGGCCAAGTA+AGG | + | chr5_2:15416446-15416465 | Msa0759660:three_prime_UTR | 55.0% | |
| GGTGCATACCTTACTTGGCC+AGG | - | chr5_2:15416457-15416476 | None:intergenic | 55.0% | |
| TCAGCAGACACCCGATAGCT+AGG | - | chr5_2:15416478-15416497 | None:intergenic | 55.0% | |
| GCACGCATGACATCGGGGAT+TGG | - | chr5_2:15413166-15413185 | None:intergenic | 60.0% | |
| GCTGACGGCGTAAGGTTGTC+TGG | - | chr5_2:15413242-15413261 | None:intergenic | 60.0% | |
| GACAACCTTACGCCGTCAGC+CGG | + | chr5_2:15413242-15413261 | Msa0759660:CDS | 60.0% | |
| GTGACCAGCTTTCCGGCTGA+CGG | - | chr5_2:15413257-15413276 | None:intergenic | 60.0% | |
| !! | CGTGCTGGTCAGGCTGCTTT+TGG | + | chr5_2:15413352-15413371 | Msa0759660:CDS | 60.0% |
| CCTTCCCGGGTCTAATCCCA+AGG | - | chr5_2:15413657-15413676 | None:intergenic | 60.0% | |
| CCTTGGGATTAGACCCGGGA+AGG | + | chr5_2:15413654-15413673 | Msa0759660:CDS | 60.0% | |
| CTTAACCGCCTTCGCCCCTT+CGG | - | chr5_2:15413737-15413756 | None:intergenic | 60.0% | |
| CTTGCACCGGGTGGGCATTT+GGG | + | chr5_2:15413817-15413836 | Msa0759660:CDS | 60.0% | |
| CGCTACGACGGTTAGCGTAG+CGG | - | chr5_2:15414971-15414990 | None:intergenic | 60.0% | |
| CGCTACGCTAACCGTCGTAG+CGG | + | chr5_2:15414969-15414988 | Msa0759660:intron | 60.0% | |
| GCTTCTGCCATCAAGGCTGC+AGG | + | chr5_2:15416142-15416161 | Msa0759660:CDS | 60.0% | |
| GCTTTCCGGCTGACGGCGTA+AGG | - | chr5_2:15413250-15413269 | None:intergenic | 65.0% | |
| TACGCCGTCAGCCGGAAAGC+TGG | + | chr5_2:15413250-15413269 | Msa0759660:CDS | 65.0% | |
| GTCCCACCACCTGCAACACG+AGG | - | chr5_2:15413328-15413347 | None:intergenic | 65.0% | |
| AGCAGCCTGACCAGCACGGT+GGG | - | chr5_2:15413350-15413369 | None:intergenic | 65.0% | |
| AAGCAGCCTGACCAGCACGG+TGG | - | chr5_2:15413351-15413370 | None:intergenic | 65.0% | |
| GACCCGGGAAGGGGAAGATG+AGG | + | chr5_2:15413665-15413684 | Msa0759660:CDS | 65.0% | |
| ! | TGGTACCGAAGGGGCGAAGG+CGG | + | chr5_2:15413729-15413748 | Msa0759660:CDS | 65.0% |
| CGAAGGGGCGAAGGCGGTTA+AGG | + | chr5_2:15413735-15413754 | Msa0759660:CDS | 65.0% | |
| GCTTGCACCGGGTGGGCATT+TGG | + | chr5_2:15413816-15413835 | Msa0759660:CDS | 65.0% | |
| CACCGGGTGGGCATTTGGGT+AGG | + | chr5_2:15413821-15413840 | Msa0759660:CDS | 65.0% | |
| CGCTAACCGTCGTAGCGGTG+CGG | + | chr5_2:15414974-15414993 | Msa0759660:intron | 65.0% | |
| ! | AGCAGCGTAGTGGAGCGGAG+TGG | + | chr5_2:15415026-15415045 | Msa0759660:intron | 65.0% |
| CTGCGGCGGCCATTGGTGGA+GGG | - | chr5_2:15413072-15413091 | None:intergenic | 70.0% | |
| ! | GAGGGGACGTGCTGCTGCTG+CGG | - | chr5_2:15413089-15413108 | None:intergenic | 70.0% |
| ! | TGGGACCCACCGTGCTGGTC+AGG | + | chr5_2:15413342-15413361 | Msa0759660:CDS | 70.0% |
| GTTAGCGTAGCGGCGACGCG+TGG | - | chr5_2:15414961-15414980 | None:intergenic | 70.0% | |
| CGGCGGCCATTGGTGGAGGG+AGG | - | chr5_2:15413069-15413088 | None:intergenic | 75.0% | |
| GCTGCGGCGGCCATTGGTGG+AGG | - | chr5_2:15413073-15413092 | None:intergenic | 75.0% | |
| GCTGCTGCGGCGGCCATTGG+TGG | - | chr5_2:15413076-15413095 | None:intergenic | 75.0% | |
| GCTGCTGCTGCGGCGGCCAT+TGG | - | chr5_2:15413079-15413098 | None:intergenic | 75.0% | |
| ! | GGGACGTGCTGCTGCTGCGG+CGG | - | chr5_2:15413086-15413105 | None:intergenic | 75.0% |
| !! | GGTGGTGGGACCCACCGTGC+TGG | + | chr5_2:15413337-15413356 | Msa0759660:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 15412959 | 15416519 | 15412959 | ID=Msa0759660;Name=Msa0759660 |
| chr5_2 | mRNA | 15412959 | 15416519 | 15412959 | ID=Msa0759660-mRNA-1;Parent=Msa0759660;Name=Msa0759660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120|1|1|1|1|1|2|270|407 |
| chr5_2 | exon | 15412959 | 15414188 | 15412959 | ID=Msa0759660-mRNA-1:exon:6979;Parent=Msa0759660-mRNA-1 |
| chr5_2 | exon | 15416136 | 15416519 | 15416136 | ID=Msa0759660-mRNA-1:exon:6980;Parent=Msa0759660-mRNA-1 |
| chr5_2 | five_prime_UTR | 15412959 | 15413078 | 15412959 | ID=Msa0759660-mRNA-1:five_prime_utr;Parent=Msa0759660-mRNA-1 |
| chr5_2 | CDS | 15413079 | 15414188 | 15413079 | ID=Msa0759660-mRNA-1:cds;Parent=Msa0759660-mRNA-1 |
| chr5_2 | CDS | 15416136 | 15416249 | 15416136 | ID=Msa0759660-mRNA-1:cds;Parent=Msa0759660-mRNA-1 |
| chr5_2 | three_prime_UTR | 15416250 | 15416519 | 15416250 | ID=Msa0759660-mRNA-1:three_prime_utr;Parent=Msa0759660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
