Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578010 | XP_013446562.1 | 98.844 | 173 | 2 | 0 | 25 | 197 | 1 | 173 | 3.09e-124 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578010 | sp|Q93VI3|RL171_ARATH | 87.861 | 173 | 21 | 0 | 25 | 197 | 1 | 173 | 4.79e-113 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578010 | I3SHA1 | 98.844 | 173 | 2 | 0 | 25 | 197 | 1 | 173 | 1.47e-124 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0578010 | 0.825292 | 5.075898e-54 | -8.615850e-47 |
| Msa0003030 | Msa0578010 | 0.820291 | 7.414184e-53 | -8.615850e-47 |
| Msa0003330 | Msa0578010 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
| Msa0042510 | Msa0578010 | 0.873447 | 1.459870e-67 | -8.615850e-47 |
| Msa0079560 | Msa0578010 | 0.884682 | 1.557045e-71 | -8.615850e-47 |
| Msa0086160 | Msa0578010 | 0.827104 | 1.880661e-54 | -8.615850e-47 |
| Msa0094210 | Msa0578010 | 0.810705 | 1.009330e-50 | -8.615850e-47 |
| Msa0116600 | Msa0578010 | 0.845490 | 3.931970e-59 | -8.615850e-47 |
| Msa0116690 | Msa0578010 | 0.837144 | 6.182440e-57 | -8.615850e-47 |
| Msa0123290 | Msa0578010 | 0.813860 | 2.066950e-51 | -8.615850e-47 |
| Msa0127230 | Msa0578010 | 0.879750 | 9.659499e-70 | -8.615850e-47 |
| Msa0128330 | Msa0578010 | 0.850996 | 1.182823e-60 | -8.615850e-47 |
| Msa0132460 | Msa0578010 | 0.869617 | 2.706947e-66 | -8.615850e-47 |
| Msa0134580 | Msa0578010 | 0.809806 | 1.577507e-50 | -8.615850e-47 |
| Msa0146910 | Msa0578010 | 0.818932 | 1.514439e-52 | -8.615850e-47 |
| Msa0167860 | Msa0578010 | 0.822555 | 2.224907e-53 | -8.615850e-47 |
| Msa0168320 | Msa0578010 | 0.815210 | 1.038930e-51 | -8.615850e-47 |
| Msa0172300 | Msa0578010 | 0.830624 | 2.643870e-55 | -8.615850e-47 |
| Msa0174580 | Msa0578010 | 0.839585 | 1.450695e-57 | -8.615850e-47 |
| Msa0182050 | Msa0578010 | 0.873451 | 1.455603e-67 | -8.615850e-47 |
| Msa0182100 | Msa0578010 | 0.881330 | 2.625078e-70 | -8.615850e-47 |
| Msa0188740 | Msa0578010 | 0.847285 | 1.274221e-59 | -8.615850e-47 |
| Msa0192300 | Msa0578010 | 0.878902 | 1.927982e-69 | -8.615850e-47 |
| Msa0216200 | Msa0578010 | 0.834713 | 2.556791e-56 | -8.615850e-47 |
| Msa0233550 | Msa0578010 | 0.845599 | 3.672080e-59 | -8.615850e-47 |
| Msa0371490 | Msa0578010 | 0.852822 | 3.586115e-61 | -8.615850e-47 |
| Msa0373350 | Msa0578010 | 0.877018 | 8.796459e-69 | -8.615850e-47 |
| Msa0376850 | Msa0578010 | 0.823908 | 1.075210e-53 | -8.615850e-47 |
| Msa0382670 | Msa0578010 | 0.803439 | 3.484196e-49 | -8.615850e-47 |
| Msa0387290 | Msa0578010 | 0.837708 | 4.432793e-57 | -8.615850e-47 |
| Msa0388520 | Msa0578010 | 0.850374 | 1.769763e-60 | -8.615850e-47 |
| Msa0421920 | Msa0578010 | 0.861073 | 1.325238e-63 | -8.615850e-47 |
| Msa0426090 | Msa0578010 | 0.818569 | 1.830650e-52 | -8.615850e-47 |
| Msa0426250 | Msa0578010 | 0.815122 | 1.086847e-51 | -8.615850e-47 |
| Msa0426940 | Msa0578010 | 0.823335 | 1.464263e-53 | -8.615850e-47 |
| Msa0467740 | Msa0578010 | 0.825305 | 5.041196e-54 | -8.615850e-47 |
| Msa0469430 | Msa0578010 | 0.802176 | 6.352554e-49 | -8.615850e-47 |
| Msa0472480 | Msa0578010 | 0.816311 | 5.904771e-52 | -8.615850e-47 |
| Msa0477670 | Msa0578010 | 0.803109 | 4.077768e-49 | -8.615850e-47 |
| Msa0482560 | Msa0578010 | 0.821938 | 3.093925e-53 | -8.615850e-47 |
| Msa0239420 | Msa0578010 | 0.802850 | 4.613694e-49 | -8.615850e-47 |
| Msa0256350 | Msa0578010 | 0.819496 | 1.126623e-52 | -8.615850e-47 |
| Msa0270160 | Msa0578010 | 0.862015 | 6.833226e-64 | -8.615850e-47 |
| Msa0277600 | Msa0578010 | 0.840325 | 9.308405e-58 | -8.615850e-47 |
| Msa0301250 | Msa0578010 | 0.884918 | 1.271125e-71 | -8.615850e-47 |
| Msa0313060 | Msa0578010 | 0.868629 | 5.666668e-66 | -8.615850e-47 |
| Msa0315430 | Msa0578010 | 0.810473 | 1.132689e-50 | -8.615850e-47 |
| Msa0485220 | Msa0578010 | 0.807973 | 3.890483e-50 | -8.615850e-47 |
| Msa0511760 | Msa0578010 | 0.872302 | 3.529160e-67 | -8.615850e-47 |
| Msa0514130 | Msa0578010 | 0.819741 | 9.901894e-53 | -8.615850e-47 |
| Msa0516830 | Msa0578010 | 0.823715 | 1.193024e-53 | -8.615850e-47 |
| Msa0524340 | Msa0578010 | 0.826335 | 2.870850e-54 | -8.615850e-47 |
| Msa0524450 | Msa0578010 | 0.802560 | 5.294543e-49 | -8.615850e-47 |
| Msa0547920 | Msa0578010 | 0.847209 | 1.336523e-59 | -8.615850e-47 |
| Msa0563540 | Msa0578010 | 0.834854 | 2.356030e-56 | -8.615850e-47 |
| Msa0573550 | Msa0578010 | 0.847570 | 1.063428e-59 | -8.615850e-47 |
| Msa0574780 | Msa0578010 | 0.860557 | 1.901413e-63 | -8.615850e-47 |
| Msa0578010 | Msa0589160 | 0.853289 | 2.636507e-61 | -8.615850e-47 |
| Msa0578010 | Msa0602900 | 0.852956 | 3.284430e-61 | -8.615850e-47 |
| Msa0578010 | Msa0605600 | 0.813475 | 2.511683e-51 | -8.615850e-47 |
| Msa0578010 | Msa0609120 | 0.822085 | 2.860013e-53 | -8.615850e-47 |
| Msa0578010 | Msa0619230 | 0.906613 | 1.231150e-80 | -8.615850e-47 |
| Msa0578010 | Msa0621190 | 0.875222 | 3.653062e-68 | -8.615850e-47 |
| Msa0578010 | Msa0629280 | 0.804972 | 1.670994e-49 | -8.615850e-47 |
| Msa0578010 | Msa0643960 | 0.846919 | 1.604515e-59 | -8.615850e-47 |
| Msa0578010 | Msa0656450 | 0.975522 | 4.151504e-140 | -8.615850e-47 |
| Msa0578010 | Msa0667110 | 0.804493 | 2.103918e-49 | -8.615850e-47 |
| Msa0578010 | Msa0691760 | 0.862071 | 6.571097e-64 | -8.615850e-47 |
| Msa0578010 | Msa0694400 | 0.867926 | 9.545867e-66 | -8.615850e-47 |
| Msa0578010 | Msa0700370 | 0.902500 | 9.094897e-79 | -8.615850e-47 |
| Msa0578010 | Msa0704860 | 0.832211 | 1.075664e-55 | -8.615850e-47 |
| Msa0578010 | Msa0708630 | 0.871292 | 7.635605e-67 | -8.615850e-47 |
| Msa0578010 | Msa0759660 | 0.824817 | 6.571433e-54 | -8.615850e-47 |
| Msa0578010 | Msa0790450 | 0.844325 | 8.108569e-59 | -8.615850e-47 |
| Msa0578010 | Msa0798590 | 0.820707 | 5.948159e-53 | -8.615850e-47 |
| Msa0578010 | Msa0863290 | 0.822225 | 2.654287e-53 | -8.615850e-47 |
| Msa0578010 | Msa0902730 | 0.810371 | 1.191609e-50 | -8.615850e-47 |
| Msa0578010 | Msa0929700 | 0.827903 | 1.209851e-54 | -8.615850e-47 |
| Msa0578010 | Msa0930100 | 0.852228 | 5.297920e-61 | -8.615850e-47 |
| Msa0578010 | Msa0930360 | 0.913843 | 3.843043e-84 | -8.615850e-47 |
| Msa0578010 | Msa0930790 | 0.896621 | 3.093517e-76 | -8.615850e-47 |
| Msa0578010 | Msa0930890 | 0.807895 | 4.042173e-50 | -8.615850e-47 |
| Msa0578010 | Msa1068660 | 0.808021 | 3.800307e-50 | -8.615850e-47 |
| Msa0578010 | Msa1082050 | 0.844701 | 6.421270e-59 | -8.615850e-47 |
| Msa0578010 | Msa1126690 | 0.852004 | 6.135172e-61 | -8.615850e-47 |
| Msa0578010 | Msa1144630 | 0.892706 | 1.239927e-74 | -8.615850e-47 |
| Msa0578010 | Msa1165210 | 0.815755 | 7.856390e-52 | -8.615850e-47 |
| Msa0578010 | Msa1165700 | 0.861084 | 1.314756e-63 | -8.615850e-47 |
| Msa0578010 | Msa1227350 | 0.844836 | 5.906034e-59 | -8.615850e-47 |
| Msa0578010 | Msa1235950 | 0.846505 | 2.082516e-59 | -8.615850e-47 |
| Msa0578010 | Msa1235980 | 0.852515 | 4.388645e-61 | -8.615850e-47 |
| Msa0578010 | Msa1237040 | 0.851234 | 1.013582e-60 | -8.615850e-47 |
| Msa0578010 | Msa1245270 | 0.838976 | 2.087998e-57 | -8.615850e-47 |
| Msa0578010 | Msa1284800 | 0.871271 | 7.760995e-67 | -8.615850e-47 |
| Msa0578010 | Msa1296090 | 0.812630 | 3.849313e-51 | -8.615850e-47 |
| Msa0578010 | Msa1316100 | 0.804707 | 1.898018e-49 | -8.615850e-47 |
| Msa0578010 | Msa1317390 | 0.900479 | 7.031457e-78 | -8.615850e-47 |
| Msa0578010 | Msa1351020 | 0.890105 | 1.330795e-73 | -8.615850e-47 |
| Msa0578010 | Msa1363910 | 0.800809 | 1.210605e-48 | -8.615850e-47 |
| Msa0578010 | Msa1363930 | 0.893839 | 4.323541e-75 | -8.615850e-47 |
| Msa0578010 | Msa1366540 | 0.839990 | 1.138464e-57 | -8.615850e-47 |
| Msa0578010 | Msa1385480 | 0.863935 | 1.745332e-64 | -8.615850e-47 |
| Msa0578010 | Msa1387750 | 0.891261 | 4.668115e-74 | -8.615850e-47 |
| Msa0578010 | Msa1390760 | 0.908186 | 2.251690e-81 | -8.615850e-47 |
| Msa0578010 | Msa1403520 | 0.847230 | 1.318571e-59 | -8.615850e-47 |
| Msa0578010 | Msa1407550 | 0.897712 | 1.077660e-76 | -8.615850e-47 |
| Msa0578010 | Msa1413570 | 0.978645 | 2.927013e-146 | -8.615850e-47 |
| Msa0578010 | Msa1424570 | 0.845460 | 4.006809e-59 | -8.615850e-47 |
| Msa0578010 | Msa1432310 | 0.922540 | 8.614653e-89 | -8.615850e-47 |
| Msa0578010 | Msa1446510 | 0.848329 | 6.571232e-60 | -8.615850e-47 |
| Msa0578010 | Msa1450560 | 0.847768 | 9.381997e-60 | -8.615850e-47 |
| Msa0578010 | Msa1463510 | 0.827613 | 1.420189e-54 | -8.615850e-47 |
| Msa0578010 | Msa1463570 | 0.842422 | 2.611558e-58 | -8.615850e-47 |
| Msa0578010 | Msa1465700 | 0.833276 | 5.853994e-56 | -8.615850e-47 |
| Msa0578010 | Msa1465890 | 0.845549 | 3.789390e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578010 | MtrunA17_Chr8g0377301 | 98.844 | 173 | 2 | 0 | 25 | 197 | 1 | 173 | 2.84e-128 | 358 |
| Msa0578010 | MtrunA17_Chr3g0122641 | 95.954 | 173 | 7 | 0 | 25 | 197 | 1 | 173 | 5.03e-126 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578010 | AT1G27400.1 | 87.861 | 173 | 21 | 0 | 25 | 197 | 1 | 173 | 4.87e-114 | 322 |
| Msa0578010 | AT1G67430.1 | 87.283 | 173 | 22 | 0 | 25 | 197 | 1 | 173 | 1.12e-113 | 321 |
| Msa0578010 | AT1G67430.2 | 64.162 | 173 | 18 | 1 | 25 | 197 | 1 | 129 | 6.10e-71 | 211 |
Find 66 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAGTGTCTATTCT+TGG | 0.210303 | 4_1:-82433481 | None:intergenic |
| TCTTCTTGCTTGCTGCCAAC+TGG | 0.224595 | 4_1:-82434054 | None:intergenic |
| ATCATTAAATAGATATTTCT+TGG | 0.256668 | 4_1:+82434289 | Msa0578010:three_prime_UTR |
| TATTGCTGCCTTGTACTCTT+AGG | 0.257568 | 4_1:+82434099 | Msa0578010:three_prime_UTR |
| GCCCTCTATCGTTTATTTGC+AGG | 0.259687 | 4_1:+82430123 | Msa0578010:CDS |
| GTACACTTGGTAGGGTTATC+AGG | 0.307617 | 4_1:-82430291 | None:intergenic |
| TGCCCTTGACCAAGGCTAAA+AGG | 0.311470 | 4_1:+82433379 | Msa0578010:CDS |
| TATAAAATAGAACATAGTTT+TGG | 0.317872 | 4_1:-82434173 | None:intergenic |
| ACCATGACGACGGCGTTTGA+TGG | 0.321397 | 4_1:-82430148 | None:intergenic |
| TAGAGTGTCTATTCTTGGCC+TGG | 0.328430 | 4_1:-82433476 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 4_1:+82433445 | Msa0578010:CDS |
| TACTTTCTAGGTCAAAGGTT+TGG | 0.377018 | 4_1:+82433663 | Msa0578010:intron |
| CTTCTTGCTTGCTGCCAACT+GGG | 0.392921 | 4_1:-82434053 | None:intergenic |
| CTTGCTGCCAACTGGGACTC+CGG | 0.394551 | 4_1:-82434046 | None:intergenic |
| GCTTCTGTGCTTGATTGACT+TGG | 0.407265 | 4_1:-82433714 | None:intergenic |
| AGAGTGTCTATTCTTGGCCT+GGG | 0.411697 | 4_1:-82433475 | None:intergenic |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.422500 | 4_1:+82433444 | Msa0578010:CDS |
| GGGAAACTGCCTTTGCCATC+AGG | 0.434248 | 4_1:+82433352 | Msa0578010:CDS |
| CAAGTCAGCGAAGTTTATCC+TGG | 0.440074 | 4_1:+82433521 | Msa0578010:CDS |
| AGACGTTCTTGCACACAAAC+AGG | 0.445626 | 4_1:+82433410 | Msa0578010:CDS |
| ATAAACTTCGCTGACTTGAC+TGG | 0.446611 | 4_1:-82433516 | None:intergenic |
| GAGGTCAGCACCACGAGCCT+TGG | 0.456110 | 4_1:-82430418 | None:intergenic |
| GTCAGCACCACGAGCCTTGG+TGG | 0.461811 | 4_1:-82430415 | None:intergenic |
| TGGTGTTGGGAGGACAGCCC+AGG | 0.463667 | 4_1:+82433458 | Msa0578010:CDS |
| GCCAAGAATAGACACTCTAA+TGG | 0.473513 | 4_1:+82433480 | Msa0578010:CDS |
| AATTGTACTTGCAGAACACT+AGG | 0.474152 | 4_1:+82433331 | Msa0578010:intron |
| AAGAAGAGGGCTTAAACTCT+AGG | 0.479337 | 4_1:+82434070 | Msa0578010:exon |
| CCATTCAGACGTTTCTGTCG+TGG | 0.491424 | 4_1:+82433438 | Msa0578010:CDS |
| TGACCTCAGAGTTCATTTCA+AGG | 0.493325 | 4_1:+82430434 | Msa0578010:CDS |
| CCACGACAGAAACGTCTGAA+TGG | 0.493513 | 4_1:-82433438 | None:intergenic |
| ATTACTACTTTCTAGGTCAA+AGG | 0.496618 | 4_1:+82433658 | Msa0578010:intron |
| TCCATCAAACGCCGTCGTCA+TGG | 0.500893 | 4_1:+82430147 | Msa0578010:CDS |
| GACCAAGGCTAAAAGGTACT+TGG | 0.501746 | 4_1:+82433386 | Msa0578010:CDS |
| AACGATAGAGGGCTGAGAGC+AGG | 0.508536 | 4_1:-82430113 | None:intergenic |
| AGAAGTTGCGTACACTTGGT+AGG | 0.512427 | 4_1:-82430300 | None:intergenic |
| AACCTGCAAATAAACGATAG+AGG | 0.523015 | 4_1:-82430125 | None:intergenic |
| ACATACGGTTGATTCTTCCA+TGG | 0.528331 | 4_1:-82433759 | None:intergenic |
| AATTGTCAAACATGATTCAC+CGG | 0.528999 | 4_1:+82434244 | Msa0578010:three_prime_UTR |
| CTGCATTCTTCAGCAAATCC+AGG | 0.531822 | 4_1:-82433539 | None:intergenic |
| GGAAGAGGCGGTTCAGAAAG+AGG | 0.535941 | 4_1:+82433923 | Msa0578010:CDS |
| ATTAAATAGATATTTCTTGG+TGG | 0.542034 | 4_1:+82434292 | Msa0578010:three_prime_UTR |
| CATACGGTTGATTCTTCCAT+GGG | 0.548316 | 4_1:-82433758 | None:intergenic |
| CGCAGAACATACAGAGCCCA+TGG | 0.557011 | 4_1:+82433742 | Msa0578010:CDS |
| GTTGGCAGCAAGCAAGAAGA+GGG | 0.565267 | 4_1:+82434057 | Msa0578010:CDS |
| ACCTGCAAATAAACGATAGA+GGG | 0.576091 | 4_1:-82430124 | None:intergenic |
| AGCAGGAATGAAGTGAGGTA+TGG | 0.580970 | 4_1:-82430096 | None:intergenic |
| GAAGTTGCGTACACTTGGTA+GGG | 0.582227 | 4_1:-82430299 | None:intergenic |
| GGGCAACTTCCTGATGGCAA+AGG | 0.587242 | 4_1:-82433361 | None:intergenic |
| GGTCAAGGGCAACTTCCTGA+TGG | 0.590928 | 4_1:-82433367 | None:intergenic |
| AGTTGGCAGCAAGCAAGAAG+AGG | 0.597913 | 4_1:+82434056 | Msa0578010:CDS |
| ATTGTACTTGCAGAACACTA+GGG | 0.598625 | 4_1:+82433332 | Msa0578010:intron |
| TGACAAGACCTAAGAGTACA+AGG | 0.608536 | 4_1:-82434107 | None:intergenic |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.609236 | 4_1:+82433448 | Msa0578010:CDS |
| AAAATCAACTCAATGTGGCA+AGG | 0.612514 | 4_1:-82433891 | None:intergenic |
| TTTCCAGCCGGAGTCCCAGT+TGG | 0.613767 | 4_1:+82434039 | Msa0578010:intron |
| TTTATCTGAAAAGGAAGAGG+CGG | 0.620263 | 4_1:+82433911 | Msa0578010:CDS |
| ACAGAAACGTCTGAATGGAA+TGG | 0.621533 | 4_1:-82433433 | None:intergenic |
| CAGATAAAATCAACTCAATG+TGG | 0.623662 | 4_1:-82433896 | None:intergenic |
| CAGGAAGTTGCCCTTGACCA+AGG | 0.624452 | 4_1:+82433371 | Msa0578010:CDS |
| GACACTCTAATGGACAAGGA+AGG | 0.649233 | 4_1:+82433490 | Msa0578010:CDS |
| TTACCTTGAAATGAACTCTG+AGG | 0.651324 | 4_1:-82430437 | None:intergenic |
| ACTCTAATGGACAAGGAAGG+TGG | 0.651493 | 4_1:+82433493 | Msa0578010:CDS |
| TATGCAGCCACCAAGGCTCG+TGG | 0.654672 | 4_1:+82430408 | Msa0578010:intron |
| CTGAGAGCAGGAATGAAGTG+AGG | 0.665047 | 4_1:-82430101 | None:intergenic |
| AATAGACACTCTAATGGACA+AGG | 0.667364 | 4_1:+82433486 | Msa0578010:CDS |
| TTCTAAGCTTACCATGACGA+CGG | 0.697620 | 4_1:-82430158 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAATTGAAATGAATA+AGG | - | chr4_1:82431553-82431572 | None:intergenic | 10.0% |
| !!! | TGTTTTATTATTATAGATTA+TGG | + | chr4_1:82432370-82432389 | Msa0578010:intron | 10.0% |
| !! | ATCATTAATAAAACATAATT+GGG | - | chr4_1:82433236-82433255 | None:intergenic | 10.0% |
| !! | AATCATTAATAAAACATAAT+TGG | - | chr4_1:82433237-82433256 | None:intergenic | 10.0% |
| !! | TTCATAAAAAAATCATATAA+AGG | - | chr4_1:82433292-82433311 | None:intergenic | 10.0% |
| !!! | ATTTTATAAGGTAATAGATA+AGG | + | chr4_1:82430707-82430726 | Msa0578010:intron | 15.0% |
| !!! | ATTTAGTTTATAGATGAAAA+AGG | + | chr4_1:82432408-82432427 | Msa0578010:intron | 15.0% |
| !!! | TAATAACCATGATTTTTTTA+AGG | + | chr4_1:82432478-82432497 | Msa0578010:intron | 15.0% |
| !!! | ATATAAAACTCATTGTTATT+GGG | + | chr4_1:82432673-82432692 | Msa0578010:intron | 15.0% |
| !! | TATATAATCAAGTAATAATG+AGG | - | chr4_1:82432917-82432936 | None:intergenic | 15.0% |
| !!! | TTAATTGATTATATTTGTTG+TGG | + | chr4_1:82433802-82433821 | Msa0578010:intron | 15.0% |
| !! | TATTGCTTATTTAATTGTTT+CGG | + | chr4_1:82433974-82433993 | Msa0578010:intron | 15.0% |
| !!! | TATAAAATAGAACATAGTTT+TGG | - | chr4_1:82434176-82434195 | None:intergenic | 15.0% |
| !!! | TCTATTTAATGATTTTATCA+CGG | - | chr4_1:82434282-82434301 | None:intergenic | 15.0% |
| !! | ATCATTAAATAGATATTTCT+TGG | + | chr4_1:82434289-82434308 | Msa0578010:three_prime_UTR | 15.0% |
| !!! | TGTTTGTTTTTCGAATTTTT+AGG | + | chr4_1:82430251-82430270 | Msa0578010:intron | 20.0% |
| !! | TACAACAAAAAATGAGTATT+AGG | - | chr4_1:82430525-82430544 | None:intergenic | 20.0% |
| !! | AGAAATGTAGTTTGAAAATT+TGG | + | chr4_1:82430826-82430845 | Msa0578010:intron | 20.0% |
| !!! | TAAAACTTTTCTATGTAATG+GGG | - | chr4_1:82431002-82431021 | None:intergenic | 20.0% |
| !!! | CTAAAACTTTTCTATGTAAT+GGG | - | chr4_1:82431003-82431022 | None:intergenic | 20.0% |
| !!! | ACTAAAACTTTTCTATGTAA+TGG | - | chr4_1:82431004-82431023 | None:intergenic | 20.0% |
| !! | TACTAATTATTGATCATTGA+TGG | + | chr4_1:82431449-82431468 | Msa0578010:intron | 20.0% |
| !! | ATGAAGTTAATTGATATACT+TGG | + | chr4_1:82431575-82431594 | Msa0578010:intron | 20.0% |
| !!! | GATATAAAACCATTGTTATT+GGG | + | chr4_1:82431669-82431688 | Msa0578010:intron | 20.0% |
| !! | GAAACCTATAATCATAAAAA+GGG | - | chr4_1:82431870-82431889 | None:intergenic | 20.0% |
| !! | TGAAACCTATAATCATAAAA+AGG | - | chr4_1:82431871-82431890 | None:intergenic | 20.0% |
| !! | ATGATTATAGGTTTCATAAA+TGG | + | chr4_1:82431875-82431894 | Msa0578010:intron | 20.0% |
| !!! | ATATATAACCCATTGTTATT+GGG | + | chr4_1:82432279-82432298 | Msa0578010:intron | 20.0% |
| !! | GATATAAAACTCATTGTTAT+TGG | + | chr4_1:82432672-82432691 | Msa0578010:intron | 20.0% |
| !! | TACTTGATTATATAAGACAT+AGG | + | chr4_1:82432923-82432942 | Msa0578010:intron | 20.0% |
| !!! | ATTCAAGAAGCATTAATTAA+AGG | + | chr4_1:82433125-82433144 | Msa0578010:intron | 20.0% |
| !!! | ATCATAAGATTTGAAACATA+CGG | - | chr4_1:82433777-82433796 | None:intergenic | 20.0% |
| !!! | GTTCTATTTTATACTGAATT+TGG | + | chr4_1:82434183-82434202 | Msa0578010:three_prime_UTR | 20.0% |
| !! | ATTAAATAGATATTTCTTGG+TGG | + | chr4_1:82434292-82434311 | Msa0578010:three_prime_UTR | 20.0% |
| !!! | TATTGTGTTTTAAGCCTAAT+TGG | + | chr4_1:82430330-82430349 | Msa0578010:intron | 25.0% |
| ! | TTCATCTCAAAAAACCAATT+AGG | - | chr4_1:82430347-82430366 | None:intergenic | 25.0% |
| !! | TAGTCATTGTCAATTTTGTT+GGG | + | chr4_1:82430744-82430763 | Msa0578010:intron | 25.0% |
| ! | ATGTAGTTTGAAAATTTGGA+AGG | + | chr4_1:82430830-82430849 | Msa0578010:intron | 25.0% |
| ! | TTGAAAATTTGGAAGGAAAA+AGG | + | chr4_1:82430837-82430856 | Msa0578010:intron | 25.0% |
| !! | ATGTTATTTGAAAGACAAAC+TGG | - | chr4_1:82431139-82431158 | None:intergenic | 25.0% |
| !!! | GGTTTTCTCTATATTTTAAC+TGG | - | chr4_1:82431226-82431245 | None:intergenic | 25.0% |
| ! | TGAACCTTAAATCATTACAT+GGG | - | chr4_1:82431379-82431398 | None:intergenic | 25.0% |
| !! | ATTTAAGGTTCACTAAATGA+GGG | + | chr4_1:82431387-82431406 | Msa0578010:intron | 25.0% |
| ! | CCAAACAATCTAAGTAATAA+GGG | - | chr4_1:82431518-82431537 | None:intergenic | 25.0% |
| ! | ACCAAACAATCTAAGTAATA+AGG | - | chr4_1:82431519-82431538 | None:intergenic | 25.0% |
| ! | GGATATAAAACCATTGTTAT+TGG | + | chr4_1:82431668-82431687 | Msa0578010:intron | 25.0% |
| !! | AGTTCCCTTTTTATGATTAT+AGG | + | chr4_1:82431863-82431882 | Msa0578010:intron | 25.0% |
| ! | GATATATAACCCATTGTTAT+TGG | + | chr4_1:82432278-82432297 | Msa0578010:intron | 25.0% |
| ! | CAGAACCTTAAATCATAAAA+AGG | - | chr4_1:82432513-82432532 | None:intergenic | 25.0% |
| !! | TTTTATATCCCTGAATGTTA+CGG | - | chr4_1:82432661-82432680 | None:intergenic | 25.0% |
| !! | ATGTGTTGACATGTATTTAT+TGG | + | chr4_1:82432817-82432836 | Msa0578010:intron | 25.0% |
| ! | ATGTAATATTGAACTGGAAA+AGG | - | chr4_1:82432964-82432983 | None:intergenic | 25.0% |
| !! | TTTTCCAGTTCAATATTACA+TGG | + | chr4_1:82432963-82432982 | Msa0578010:intron | 25.0% |
| !! | TTTTCCATGTAATATTGAAC+TGG | - | chr4_1:82432970-82432989 | None:intergenic | 25.0% |
| ! | CTCTCTAAACAATTATTGTT+TGG | + | chr4_1:82433188-82433207 | Msa0578010:intron | 25.0% |
| ! | AACGTTAATTACTACTTTCT+AGG | + | chr4_1:82433651-82433670 | Msa0578010:intron | 25.0% |
| !!! | TGAGTTGATTTTATCTGAAA+AGG | + | chr4_1:82433902-82433921 | Msa0578010:CDS | 25.0% |
| TTAGGTAACACAAATTGAAC+TGG | - | chr4_1:82430507-82430526 | None:intergenic | 30.0% | |
| GAACTTATGTATTTCTCTGA+TGG | + | chr4_1:82430570-82430589 | Msa0578010:intron | 30.0% | |
| AAGCTAAAAACAAGCTTGTA+AGG | + | chr4_1:82430607-82430626 | Msa0578010:intron | 30.0% | |
| AATAGATAAGGCAATCCAAA+CGG | + | chr4_1:82430719-82430738 | Msa0578010:intron | 30.0% | |
| CAACAAAATTGACAATGACT+AGG | - | chr4_1:82430745-82430764 | None:intergenic | 30.0% | |
| ! | CTAGTCATTGTCAATTTTGT+TGG | + | chr4_1:82430743-82430762 | Msa0578010:intron | 30.0% |
| ACAATAGATGTAGTGAAACT+TGG | + | chr4_1:82431043-82431062 | Msa0578010:intron | 30.0% | |
| !! | TTGTTGTTTATGTTGTACTG+AGG | + | chr4_1:82431109-82431128 | Msa0578010:intron | 30.0% |
| GAAACTAGTGTCTAATAGAT+GGG | - | chr4_1:82431247-82431266 | None:intergenic | 30.0% | |
| ! | CATCTATTAGACACTAGTTT+CGG | + | chr4_1:82431246-82431265 | Msa0578010:intron | 30.0% |
| ! | TTTTCATAGGGTTATCTATC+AGG | - | chr4_1:82431276-82431295 | None:intergenic | 30.0% |
| CAGGTTATTCACAAAATAAC+AGG | - | chr4_1:82431306-82431325 | None:intergenic | 30.0% | |
| AATAACCTGTCGTTAAAATC+AGG | + | chr4_1:82431317-82431336 | Msa0578010:intron | 30.0% | |
| ATAACCTGTCGTTAAAATCA+GGG | + | chr4_1:82431318-82431337 | Msa0578010:intron | 30.0% | |
| ! | AGATAATAGCCATGGTTTTT+GGG | + | chr4_1:82431341-82431360 | Msa0578010:intron | 30.0% |
| AACTCCCATGTAATGATTTA+AGG | + | chr4_1:82431372-82431391 | Msa0578010:intron | 30.0% | |
| GTGAACCTTAAATCATTACA+TGG | - | chr4_1:82431380-82431399 | None:intergenic | 30.0% | |
| ! | GATTTAAGGTTCACTAAATG+AGG | + | chr4_1:82431386-82431405 | Msa0578010:intron | 30.0% |
| TGTTTCATTTAGCATCTTAG+TGG | + | chr4_1:82431477-82431496 | Msa0578010:intron | 30.0% | |
| CCCTTATTACTTAGATTGTT+TGG | + | chr4_1:82431515-82431534 | Msa0578010:intron | 30.0% | |
| ! | TTTTATATCCCTGAAGGTTA+CGG | - | chr4_1:82431658-82431677 | None:intergenic | 30.0% |
| AATGTACCTCGTTAAATTCA+GGG | + | chr4_1:82431836-82431855 | Msa0578010:intron | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | chr4_1:82432017-82432036 | Msa0578010:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | chr4_1:82432021-82432040 | None:intergenic | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | chr4_1:82432017-82432036 | Msa0578010:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | chr4_1:82432021-82432040 | None:intergenic | 30.0% | |
| ATTGAAAAAAAGCAGTGGTT+TGG | + | chr4_1:82432221-82432240 | Msa0578010:intron | 30.0% | |
| TTATATATCCCTGAAGGTTA+CGG | - | chr4_1:82432267-82432286 | None:intergenic | 30.0% | |
| AGTTTATAGATGAAAAAGGC+AGG | + | chr4_1:82432412-82432431 | Msa0578010:intron | 30.0% | |
| GGTTCACCTTAAAAAAATCA+TGG | - | chr4_1:82432487-82432506 | None:intergenic | 30.0% | |
| CCTTAAATCATAAAAAGGAG+AGG | - | chr4_1:82432508-82432527 | None:intergenic | 30.0% | |
| ! | CCTCTCCTTTTTATGATTTA+AGG | + | chr4_1:82432505-82432524 | Msa0578010:intron | 30.0% |
| TTTATATCCCTGAATGTTAC+GGG | - | chr4_1:82432660-82432679 | None:intergenic | 30.0% | |
| ATTACATGGAAAAGACGTAT+AGG | + | chr4_1:82432977-82432996 | Msa0578010:intron | 30.0% | |
| TCCTGATGTAAAAAGAAAAC+AGG | + | chr4_1:82433010-82433029 | Msa0578010:intron | 30.0% | |
| ! | ACCTGTTTTCTTTTTACATC+AGG | - | chr4_1:82433014-82433033 | None:intergenic | 30.0% |
| ATTACTACTTTCTAGGTCAA+AGG | + | chr4_1:82433658-82433677 | Msa0578010:intron | 30.0% | |
| !!! | TGTGGTTTTTTTTGAAAGTG+TGG | + | chr4_1:82433820-82433839 | Msa0578010:intron | 30.0% |
| CAGATAAAATCAACTCAATG+TGG | - | chr4_1:82433899-82433918 | None:intergenic | 30.0% | |
| ! | GATTTTATCTGAAAAGGAAG+AGG | + | chr4_1:82433908-82433927 | Msa0578010:CDS | 30.0% |
| ! | TAATTGTTTCGGCAAGATTT+TGG | + | chr4_1:82433985-82434004 | Msa0578010:intron | 30.0% |
| !!! | ATTCTGATATTTTTTCCAGC+CGG | + | chr4_1:82434027-82434046 | Msa0578010:intron | 30.0% |
| AATTGTCAAACATGATTCAC+CGG | + | chr4_1:82434244-82434263 | Msa0578010:three_prime_UTR | 30.0% | |
| ACCTGCAAATAAACGATAGA+GGG | - | chr4_1:82430127-82430146 | None:intergenic | 35.0% | |
| AACCTGCAAATAAACGATAG+AGG | - | chr4_1:82430128-82430147 | None:intergenic | 35.0% | |
| !!! | TTTTTTATATGCAGCCACCA+AGG | + | chr4_1:82430401-82430420 | Msa0578010:intron | 35.0% |
| TTACCTTGAAATGAACTCTG+AGG | - | chr4_1:82430440-82430459 | None:intergenic | 35.0% | |
| AAATTTGGAAGGAAAAAGGC+TGG | + | chr4_1:82430841-82430860 | Msa0578010:intron | 35.0% | |
| AATTTGGAAGGAAAAAGGCT+GGG | + | chr4_1:82430842-82430861 | Msa0578010:intron | 35.0% | |
| CGAAACTAGTGTCTAATAGA+TGG | - | chr4_1:82431248-82431267 | None:intergenic | 35.0% | |
| ! | GAGATAATAGCCATGGTTTT+TGG | + | chr4_1:82431340-82431359 | Msa0578010:intron | 35.0% |
| AAATCATTACATGGGAGTTG+AGG | - | chr4_1:82431371-82431390 | None:intergenic | 35.0% | |
| AACCTGATTGAAAAAAGCAG+TGG | + | chr4_1:82431607-82431626 | Msa0578010:intron | 35.0% | |
| TTTATATCCCTGAAGGTTAC+GGG | - | chr4_1:82431657-82431676 | None:intergenic | 35.0% | |
| !!! | CAATGGTTTTATATCCCTGA+AGG | - | chr4_1:82431664-82431683 | None:intergenic | 35.0% |
| ATAGGTTCACCCAATAACAA+TGG | - | chr4_1:82431681-82431700 | None:intergenic | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | chr4_1:82431699-82431718 | None:intergenic | 35.0% | |
| GAATGTACCTCGTTAAATTC+AGG | + | chr4_1:82431835-82431854 | Msa0578010:intron | 35.0% | |
| ACCTGATTGAAAAAAAGCAG+TGG | + | chr4_1:82432216-82432235 | Msa0578010:intron | 35.0% | |
| !!! | ACCACTGCTTTTTTTCAATC+AGG | - | chr4_1:82432220-82432239 | None:intergenic | 35.0% |
| TATATATCCCTGAAGGTTAC+GGG | - | chr4_1:82432266-82432285 | None:intergenic | 35.0% | |
| !! | AATGGGTTATATATCCCTGA+AGG | - | chr4_1:82432273-82432292 | None:intergenic | 35.0% |
| AACCTGATTGAAAAAAGCAG+TGG | + | chr4_1:82431607-82431626 | Msa0578010:intron | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | chr4_1:82431699-82431718 | None:intergenic | 35.0% | |
| TCTTTGTGATACGTGATTGA+AGG | + | chr4_1:82432711-82432730 | Msa0578010:intron | 35.0% | |
| ATTGAAGGTTCAGTAAACGA+TGG | + | chr4_1:82432726-82432745 | Msa0578010:intron | 35.0% | |
| TGATTTAGCCACCTTCTTAA+TGG | + | chr4_1:82432874-82432893 | Msa0578010:intron | 35.0% | |
| AGTAGCAGTAGCTTAATTGT+AGG | - | chr4_1:82433264-82433283 | None:intergenic | 35.0% | |
| AATTGTACTTGCAGAACACT+AGG | + | chr4_1:82433331-82433350 | Msa0578010:intron | 35.0% | |
| ATTGTACTTGCAGAACACTA+GGG | + | chr4_1:82433332-82433351 | Msa0578010:intron | 35.0% | |
| ! | TCCATTAGAGTGTCTATTCT+TGG | - | chr4_1:82433484-82433503 | None:intergenic | 35.0% |
| ! | AATAGACACTCTAATGGACA+AGG | + | chr4_1:82433486-82433505 | Msa0578010:CDS | 35.0% |
| TACTTTCTAGGTCAAAGGTT+TGG | + | chr4_1:82433663-82433682 | Msa0578010:intron | 35.0% | |
| AAAATCAACTCAATGTGGCA+AGG | - | chr4_1:82433894-82433913 | None:intergenic | 35.0% | |
| TTTATCTGAAAAGGAAGAGG+CGG | + | chr4_1:82433911-82433930 | Msa0578010:CDS | 35.0% | |
| ! | ATCACGGTTTTTGTAAACTC+CGG | - | chr4_1:82434266-82434285 | None:intergenic | 35.0% |
| TTCTAAGCTTACCATGACGA+CGG | - | chr4_1:82430161-82430180 | None:intergenic | 40.0% | |
| TTACAGAAGTTGCGTACACT+TGG | - | chr4_1:82430307-82430326 | None:intergenic | 40.0% | |
| TGACCTCAGAGTTCATTTCA+AGG | + | chr4_1:82430434-82430453 | Msa0578010:CDS | 40.0% | |
| AGCATGTTCACATGTTACAG+AGG | - | chr4_1:82430888-82430907 | None:intergenic | 40.0% | |
| ACGAATCACAAACAGAGACT+CGG | - | chr4_1:82430957-82430976 | None:intergenic | 40.0% | |
| !! | ACAGGCAACTGCTTTTCATA+GGG | - | chr4_1:82431288-82431307 | None:intergenic | 40.0% |
| !! | AACAGGCAACTGCTTTTCAT+AGG | - | chr4_1:82431289-82431308 | None:intergenic | 40.0% |
| !! | ATCTCCCTGATTTTAACGAC+AGG | - | chr4_1:82431325-82431344 | None:intergenic | 40.0% |
| AATCAGGGAGATAATAGCCA+TGG | + | chr4_1:82431333-82431352 | Msa0578010:intron | 40.0% | |
| ! | GAGGGTACATTTCGTACATA+TGG | + | chr4_1:82431405-82431424 | Msa0578010:intron | 40.0% |
| TCTAAGTAATAAGGGTAGCC+AGG | - | chr4_1:82431510-82431529 | None:intergenic | 40.0% | |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | chr4_1:82431612-82431631 | None:intergenic | 40.0% |
| GATTGAAAAAAGCAGTGGTC+TGG | + | chr4_1:82431612-82431631 | Msa0578010:intron | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | chr4_1:82431707-82431726 | Msa0578010:intron | 40.0% | |
| ACTGAAGGTTCAGTAAACGA+TGG | + | chr4_1:82431722-82431741 | Msa0578010:intron | 40.0% | |
| CTATCTCCCTGAATTTAACG+AGG | - | chr4_1:82431845-82431864 | None:intergenic | 40.0% | |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | chr4_1:82432012-82432031 | None:intergenic | 40.0% |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | chr4_1:82432012-82432031 | None:intergenic | 40.0% |
| GAGGTTCACCCAATAACAAT+GGG | - | chr4_1:82432290-82432309 | None:intergenic | 40.0% | |
| AGAGGTTCACCCAATAACAA+TGG | - | chr4_1:82432291-82432310 | None:intergenic | 40.0% | |
| GTATCACAAAGACAAGACAG+AGG | - | chr4_1:82432309-82432328 | None:intergenic | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | chr4_1:82431707-82431726 | Msa0578010:intron | 40.0% | |
| !! | CAGGTTTGTTGTCTTGTGAA+TGG | + | chr4_1:82432431-82432450 | Msa0578010:intron | 40.0% |
| TCTCCCTGAGTTTAACAAGA+GGG | - | chr4_1:82432458-82432477 | None:intergenic | 40.0% | |
| ATCTCCCTGAGTTTAACAAG+AGG | - | chr4_1:82432459-82432478 | None:intergenic | 40.0% | |
| CAGGTTGTTGCATGACTATA+GGG | - | chr4_1:82432596-82432615 | None:intergenic | 40.0% | |
| ! | TCAGGTTGTTGCATGACTAT+AGG | - | chr4_1:82432597-82432616 | None:intergenic | 40.0% |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | chr4_1:82431612-82431631 | None:intergenic | 40.0% |
| GATTGAAAAAAGCAGTGGTC+TGG | + | chr4_1:82431612-82431631 | Msa0578010:intron | 40.0% | |
| AAGCAACTAGGCCATTAAGA+AGG | - | chr4_1:82432888-82432907 | None:intergenic | 40.0% | |
| ATGAGGCAAATCAAGCAACT+AGG | - | chr4_1:82432900-82432919 | None:intergenic | 40.0% | |
| ATATCACAGACATTTCCGAG+AGG | - | chr4_1:82433060-82433079 | None:intergenic | 40.0% | |
| !!! | TACCTTTTAGCCTTGGTCAA+GGG | - | chr4_1:82433384-82433403 | None:intergenic | 40.0% |
| ! | TTCCAAGTACCTTTTAGCCT+TGG | - | chr4_1:82433391-82433410 | None:intergenic | 40.0% |
| ACAGAAACGTCTGAATGGAA+TGG | - | chr4_1:82433436-82433455 | None:intergenic | 40.0% | |
| GCCAAGAATAGACACTCTAA+TGG | + | chr4_1:82433480-82433499 | Msa0578010:CDS | 40.0% | |
| !! | ATAAACTTCGCTGACTTGAC+TGG | - | chr4_1:82433519-82433538 | None:intergenic | 40.0% |
| ! | CATACGGTTGATTCTTCCAT+GGG | - | chr4_1:82433761-82433780 | None:intergenic | 40.0% |
| ! | ACATACGGTTGATTCTTCCA+TGG | - | chr4_1:82433762-82433781 | None:intergenic | 40.0% |
| AAGAAGAGGGCTTAAACTCT+AGG | + | chr4_1:82434070-82434089 | Msa0578010:exon | 40.0% | |
| TATTGCTGCCTTGTACTCTT+AGG | + | chr4_1:82434099-82434118 | Msa0578010:three_prime_UTR | 40.0% | |
| ! | TGACAAGACCTAAGAGTACA+AGG | - | chr4_1:82434110-82434129 | None:intergenic | 40.0% |
| AGCAGGAATGAAGTGAGGTA+TGG | - | chr4_1:82430099-82430118 | None:intergenic | 45.0% | |
| GCCCTCTATCGTTTATTTGC+AGG | + | chr4_1:82430123-82430142 | Msa0578010:CDS | 45.0% | |
| GTACACTTGGTAGGGTTATC+AGG | - | chr4_1:82430294-82430313 | None:intergenic | 45.0% | |
| GAAGTTGCGTACACTTGGTA+GGG | - | chr4_1:82430302-82430321 | None:intergenic | 45.0% | |
| AGAAGTTGCGTACACTTGGT+AGG | - | chr4_1:82430303-82430322 | None:intergenic | 45.0% | |
| TTGACAATGACTAGGCCGTT+TGG | - | chr4_1:82430737-82430756 | None:intergenic | 45.0% | |
| ! | GTTACAGAGGCATGTTCACA+TGG | - | chr4_1:82430875-82430894 | None:intergenic | 45.0% |
| TGAGGTTCTCCCAAAAACCA+TGG | - | chr4_1:82431353-82431372 | None:intergenic | 45.0% | |
| CATCTTAGTGGCATAGTTCC+TGG | + | chr4_1:82431489-82431508 | Msa0578010:intron | 45.0% | |
| ! | TGTTTCAAGTAGCCTCCTAG+TGG | + | chr4_1:82431979-82431998 | Msa0578010:intron | 45.0% |
| !! | TACGGGTGGACTGTTCATAT+AGG | - | chr4_1:82432249-82432268 | None:intergenic | 45.0% |
| TGGACCCTCTTGTTAAACTC+AGG | + | chr4_1:82432451-82432470 | Msa0578010:intron | 45.0% | |
| GGACCCTCTTGTTAAACTCA+GGG | + | chr4_1:82432452-82432471 | Msa0578010:intron | 45.0% | |
| ATATCCCTGAATGTTACGGG+TGG | - | chr4_1:82432657-82432676 | None:intergenic | 45.0% | |
| CAACTAGGCCATTAAGAAGG+TGG | - | chr4_1:82432885-82432904 | None:intergenic | 45.0% | |
| TCTATATCGAGCAGTCCTCT+CGG | + | chr4_1:82433042-82433061 | Msa0578010:intron | 45.0% | |
| !!! | GTACCTTTTAGCCTTGGTCA+AGG | - | chr4_1:82433385-82433404 | None:intergenic | 45.0% |
| !! | GACCAAGGCTAAAAGGTACT+TGG | + | chr4_1:82433386-82433405 | Msa0578010:CDS | 45.0% |
| AGACGTTCTTGCACACAAAC+AGG | + | chr4_1:82433410-82433429 | Msa0578010:CDS | 45.0% | |
| ! | AGAGTGTCTATTCTTGGCCT+GGG | - | chr4_1:82433478-82433497 | None:intergenic | 45.0% |
| ! | TAGAGTGTCTATTCTTGGCC+TGG | - | chr4_1:82433479-82433498 | None:intergenic | 45.0% |
| ! | GACACTCTAATGGACAAGGA+AGG | + | chr4_1:82433490-82433509 | Msa0578010:CDS | 45.0% |
| ! | ACTCTAATGGACAAGGAAGG+TGG | + | chr4_1:82433493-82433512 | Msa0578010:CDS | 45.0% |
| CAAGTCAGCGAAGTTTATCC+TGG | + | chr4_1:82433521-82433540 | Msa0578010:CDS | 45.0% | |
| CTGCATTCTTCAGCAAATCC+AGG | - | chr4_1:82433542-82433561 | None:intergenic | 45.0% | |
| GCTTCTGTGCTTGATTGACT+TGG | - | chr4_1:82433717-82433736 | None:intergenic | 45.0% | |
| !!! | AGTTTTTTTTTTATTTTATA+AGG | + | chr4_1:82430695-82430714 | Msa0578010:intron | 5.0% |
| !! | TAATTAATAATTGATATATT+TGG | + | chr4_1:82432181-82432200 | Msa0578010:intron | 5.0% |
| CTGAGAGCAGGAATGAAGTG+AGG | - | chr4_1:82430104-82430123 | None:intergenic | 50.0% | |
| !! | TACGGGTGGACTGCTCATAT+AGG | - | chr4_1:82431640-82431659 | None:intergenic | 50.0% |
| ATATCCCTGAAGGTTACGGG+TGG | - | chr4_1:82431654-82431673 | None:intergenic | 50.0% | |
| TAGCCAGGAACTATGCCACT+AGG | - | chr4_1:82431495-82431514 | None:intergenic | 50.0% | |
| ! | GAGTGTTTCAAGTAGCCTCC+TGG | + | chr4_1:82431976-82431995 | Msa0578010:intron | 50.0% |
| ! | TGTTTCAAGTAGCCTCCTGG+TGG | + | chr4_1:82432081-82432100 | Msa0578010:intron | 50.0% |
| ATATCCCTGAAGGTTACGGG+TGG | - | chr4_1:82431654-82431673 | None:intergenic | 50.0% | |
| TGCCCTTGACCAAGGCTAAA+AGG | + | chr4_1:82433379-82433398 | Msa0578010:CDS | 50.0% | |
| CCACGACAGAAACGTCTGAA+TGG | - | chr4_1:82433441-82433460 | None:intergenic | 50.0% | |
| CCATTCAGACGTTTCTGTCG+TGG | + | chr4_1:82433438-82433457 | Msa0578010:CDS | 50.0% | |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr4_1:82433444-82433463 | Msa0578010:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr4_1:82433445-82433464 | Msa0578010:CDS | 50.0% | |
| ! | GGCGGTTCAGAAAGAGGTAT+TGG | + | chr4_1:82433929-82433948 | Msa0578010:intron | 50.0% |
| ! | CTTCTTGCTTGCTGCCAACT+GGG | - | chr4_1:82434056-82434075 | None:intergenic | 50.0% |
| ! | TCTTCTTGCTTGCTGCCAAC+TGG | - | chr4_1:82434057-82434076 | None:intergenic | 50.0% |
| AGTTGGCAGCAAGCAAGAAG+AGG | + | chr4_1:82434056-82434075 | Msa0578010:CDS | 50.0% | |
| GTTGGCAGCAAGCAAGAAGA+GGG | + | chr4_1:82434057-82434076 | Msa0578010:CDS | 50.0% | |
| AACGATAGAGGGCTGAGAGC+AGG | - | chr4_1:82430116-82430135 | None:intergenic | 55.0% | |
| TCCATCAAACGCCGTCGTCA+TGG | + | chr4_1:82430147-82430166 | Msa0578010:CDS | 55.0% | |
| ACCATGACGACGGCGTTTGA+TGG | - | chr4_1:82430151-82430170 | None:intergenic | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | chr4_1:82431647-82431666 | Msa0578010:intron | 55.0% | |
| CCAGGAACTATGCCACTAGG+AGG | - | chr4_1:82431994-82432013 | None:intergenic | 55.0% | |
| CCTCCTAGTGGCATAGTTCC+TGG | + | chr4_1:82431991-82432010 | Msa0578010:intron | 55.0% | |
| TAGCCAGGAACTATGCCACC+AGG | - | chr4_1:82432099-82432118 | None:intergenic | 55.0% | |
| ACAGTCCACCCGTAACCTTC+AGG | + | chr4_1:82432255-82432274 | Msa0578010:intron | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | chr4_1:82431647-82431666 | Msa0578010:intron | 55.0% | |
| TACGGGTGGACGGCTCATAT+AGG | - | chr4_1:82432643-82432662 | None:intergenic | 55.0% | |
| CCCTGAATGTTACGGGTGGA+CGG | - | chr4_1:82432653-82432672 | None:intergenic | 55.0% | |
| CCGTCCACCCGTAACATTCA+GGG | + | chr4_1:82432650-82432669 | Msa0578010:intron | 55.0% | |
| GGGAAACTGCCTTTGCCATC+AGG | + | chr4_1:82433352-82433371 | Msa0578010:CDS | 55.0% | |
| GGGCAACTTCCTGATGGCAA+AGG | - | chr4_1:82433364-82433383 | None:intergenic | 55.0% | |
| GGTCAAGGGCAACTTCCTGA+TGG | - | chr4_1:82433370-82433389 | None:intergenic | 55.0% | |
| CAGGAAGTTGCCCTTGACCA+AGG | + | chr4_1:82433371-82433390 | Msa0578010:CDS | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr4_1:82433448-82433467 | Msa0578010:CDS | 55.0% |
| CGCAGAACATACAGAGCCCA+TGG | + | chr4_1:82433742-82433761 | Msa0578010:CDS | 55.0% | |
| GGAAGAGGCGGTTCAGAAAG+AGG | + | chr4_1:82433923-82433942 | Msa0578010:CDS | 55.0% | |
| TATGCAGCCACCAAGGCTCG+TGG | + | chr4_1:82430408-82430427 | Msa0578010:intron | 60.0% | |
| GCAGTCCACCCGTAACCTTC+AGG | + | chr4_1:82431646-82431665 | Msa0578010:intron | 60.0% | |
| CCAGGAACTATGCCACCAGG+AGG | - | chr4_1:82432096-82432115 | None:intergenic | 60.0% | |
| CCTCCTGGTGGCATAGTTCC+TGG | + | chr4_1:82432093-82432112 | Msa0578010:intron | 60.0% | |
| GCCGTCCACCCGTAACATTC+AGG | + | chr4_1:82432649-82432668 | Msa0578010:intron | 60.0% | |
| TTTCCAGCCGGAGTCCCAGT+TGG | + | chr4_1:82434039-82434058 | Msa0578010:intron | 60.0% | |
| CTTGCTGCCAACTGGGACTC+CGG | - | chr4_1:82434049-82434068 | None:intergenic | 60.0% | |
| GTCAGCACCACGAGCCTTGG+TGG | - | chr4_1:82430418-82430437 | None:intergenic | 65.0% | |
| GAGGTCAGCACCACGAGCCT+TGG | - | chr4_1:82430421-82430440 | None:intergenic | 65.0% | |
| ! | TGGTGTTGGGAGGACAGCCC+AGG | + | chr4_1:82433458-82433477 | Msa0578010:CDS | 65.0% |
| CTGCCAACTGGGACTCCGGC+TGG | - | chr4_1:82434045-82434064 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82430094 | 82434329 | 82430094 | ID=Msa0578010;Name=Msa0578010 |
| chr4_1 | mRNA | 82430094 | 82434329 | 82430094 | ID=Msa0578010-mRNA-1;Parent=Msa0578010;Name=Msa0578010-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|1|0.85|1|1|1|7|245|197 |
| chr4_1 | exon | 82430094 | 82430168 | 82430094 | ID=Msa0578010-mRNA-1:exon:29854;Parent=Msa0578010-mRNA-1 |
| chr4_1 | exon | 82430273 | 82430309 | 82430273 | ID=Msa0578010-mRNA-1:exon:29855;Parent=Msa0578010-mRNA-1 |
| chr4_1 | exon | 82430415 | 82430455 | 82430415 | ID=Msa0578010-mRNA-1:exon:29856;Parent=Msa0578010-mRNA-1 |
| chr4_1 | exon | 82433345 | 82433575 | 82433345 | ID=Msa0578010-mRNA-1:exon:29857;Parent=Msa0578010-mRNA-1 |
| chr4_1 | exon | 82433673 | 82433775 | 82433673 | ID=Msa0578010-mRNA-1:exon:29858;Parent=Msa0578010-mRNA-1 |
| chr4_1 | exon | 82433877 | 82433944 | 82433877 | ID=Msa0578010-mRNA-1:exon:29859;Parent=Msa0578010-mRNA-1 |
| chr4_1 | exon | 82434046 | 82434329 | 82434046 | ID=Msa0578010-mRNA-1:exon:29860;Parent=Msa0578010-mRNA-1 |
| chr4_1 | CDS | 82430094 | 82430168 | 82430094 | ID=Msa0578010-mRNA-1:cds;Parent=Msa0578010-mRNA-1 |
| chr4_1 | CDS | 82430273 | 82430309 | 82430273 | ID=Msa0578010-mRNA-1:cds;Parent=Msa0578010-mRNA-1 |
| chr4_1 | CDS | 82430415 | 82430455 | 82430415 | ID=Msa0578010-mRNA-1:cds;Parent=Msa0578010-mRNA-1 |
| chr4_1 | CDS | 82433345 | 82433575 | 82433345 | ID=Msa0578010-mRNA-1:cds;Parent=Msa0578010-mRNA-1 |
| chr4_1 | CDS | 82433673 | 82433775 | 82433673 | ID=Msa0578010-mRNA-1:cds;Parent=Msa0578010-mRNA-1 |
| chr4_1 | CDS | 82433877 | 82433944 | 82433877 | ID=Msa0578010-mRNA-1:cds;Parent=Msa0578010-mRNA-1 |
| chr4_1 | CDS | 82434046 | 82434084 | 82434046 | ID=Msa0578010-mRNA-1:cds;Parent=Msa0578010-mRNA-1 |
| chr4_1 | three_prime_UTR | 82434085 | 82434329 | 82434085 | ID=Msa0578010-mRNA-1:three_prime_utr;Parent=Msa0578010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
