Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363930 | XP_013450314.1 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363930 | sp|O65751|RSSA_CICAR | 89.189 | 296 | 31 | 1 | 2 | 297 | 6 | 300 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363930 | G8A187 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa1363930 | 0.816065 | 6.700290e-52 | -8.615850e-47 |
| Msa0020870 | Msa1363930 | 0.834497 | 2.896218e-56 | -8.615850e-47 |
| Msa0026270 | Msa1363930 | 0.812830 | 3.480627e-51 | -8.615850e-47 |
| Msa0042510 | Msa1363930 | 0.884578 | 1.700877e-71 | -8.615850e-47 |
| Msa0079560 | Msa1363930 | 0.878693 | 2.284496e-69 | -8.615850e-47 |
| Msa0094210 | Msa1363930 | 0.877430 | 6.326249e-69 | -8.615850e-47 |
| Msa0116600 | Msa1363930 | 0.850365 | 1.779873e-60 | -8.615850e-47 |
| Msa0116690 | Msa1363930 | 0.832207 | 1.078594e-55 | -8.615850e-47 |
| Msa1351020 | Msa1363930 | 0.807172 | 5.754969e-50 | -8.615850e-47 |
| Msa1363910 | Msa1363930 | 0.847541 | 1.083111e-59 | -8.615850e-47 |
| Msa1363930 | Msa1366540 | 0.851757 | 7.208918e-61 | -8.615850e-47 |
| Msa1363930 | Msa1387750 | 0.904101 | 1.743771e-79 | -8.615850e-47 |
| Msa1363930 | Msa1390760 | 0.852690 | 3.911930e-61 | -8.615850e-47 |
| Msa1363930 | Msa1403520 | 0.818662 | 1.743663e-52 | -8.615850e-47 |
| Msa1363930 | Msa1407550 | 0.832196 | 1.084964e-55 | -8.615850e-47 |
| Msa1363930 | Msa1413570 | 0.910594 | 1.573660e-82 | -8.615850e-47 |
| Msa1363930 | Msa1432310 | 0.822148 | 2.765463e-53 | -8.615850e-47 |
| Msa1363930 | Msa1463510 | 0.898048 | 7.766752e-77 | -8.615850e-47 |
| Msa1363930 | Msa1465890 | 0.875705 | 2.495111e-68 | -8.615850e-47 |
| Msa0610380 | Msa1363930 | 0.819998 | 8.649260e-53 | -8.615850e-47 |
| Msa0619230 | Msa1363930 | 0.853042 | 3.104256e-61 | -8.615850e-47 |
| Msa0621190 | Msa1363930 | 0.892408 | 1.631280e-74 | -8.615850e-47 |
| Msa0650910 | Msa1363930 | 0.810056 | 1.393229e-50 | -8.615850e-47 |
| Msa0656450 | Msa1363930 | 0.913319 | 7.061596e-84 | -8.615850e-47 |
| Msa0691760 | Msa1363930 | 0.832005 | 1.209882e-55 | -8.615850e-47 |
| Msa0700370 | Msa1363930 | 0.913037 | 9.783326e-84 | -8.615850e-47 |
| Msa0127230 | Msa1363930 | 0.877476 | 6.094177e-69 | -8.615850e-47 |
| Msa0146910 | Msa1363930 | 0.817476 | 3.233700e-52 | -8.615850e-47 |
| Msa0168320 | Msa1363930 | 0.816605 | 5.072543e-52 | -8.615850e-47 |
| Msa0182050 | Msa1363930 | 0.804508 | 2.088427e-49 | -8.615850e-47 |
| Msa0182100 | Msa1363930 | 0.816467 | 5.448230e-52 | -8.615850e-47 |
| Msa0188740 | Msa1363930 | 0.806245 | 9.032868e-50 | -8.615850e-47 |
| Msa0192300 | Msa1363930 | 0.818624 | 1.778424e-52 | -8.615850e-47 |
| Msa0233550 | Msa1363930 | 0.849746 | 2.653848e-60 | -8.615850e-47 |
| Msa1227350 | Msa1363930 | 0.800624 | 1.320619e-48 | -8.615850e-47 |
| Msa1235980 | Msa1363930 | 0.802818 | 4.683294e-49 | -8.615850e-47 |
| Msa1245270 | Msa1363930 | 0.842200 | 2.989698e-58 | -8.615850e-47 |
| Msa1284800 | Msa1363930 | 0.879234 | 1.471065e-69 | -8.615850e-47 |
| Msa1317390 | Msa1363930 | 0.845376 | 4.219957e-59 | -8.615850e-47 |
| Msa0371490 | Msa1363930 | 0.813327 | 2.707338e-51 | -8.615850e-47 |
| Msa0373350 | Msa1363930 | 0.832801 | 7.683638e-56 | -8.615850e-47 |
| Msa0377610 | Msa1363930 | 0.845918 | 3.008966e-59 | -8.615850e-47 |
| Msa0382670 | Msa1363930 | 0.807197 | 5.684705e-50 | -8.615850e-47 |
| Msa0387290 | Msa1363930 | 0.872746 | 2.509927e-67 | -8.615850e-47 |
| Msa0388520 | Msa1363930 | 0.840965 | 6.328693e-58 | -8.615850e-47 |
| Msa0388540 | Msa1363930 | 0.883644 | 3.769048e-71 | -8.615850e-47 |
| Msa0421920 | Msa1363930 | 0.833121 | 6.397778e-56 | -8.615850e-47 |
| Msa0426820 | Msa1363930 | 0.857358 | 1.723965e-62 | -8.615850e-47 |
| Msa0426940 | Msa1363930 | 0.831988 | 1.221203e-55 | -8.615850e-47 |
| Msa0427380 | Msa1363930 | 0.801633 | 8.212162e-49 | -8.615850e-47 |
| Msa0467740 | Msa1363930 | 0.866877 | 2.067823e-65 | -8.615850e-47 |
| Msa0477670 | Msa1363930 | 0.892939 | 9.994552e-75 | -8.615850e-47 |
| Msa0987570 | Msa1363930 | 0.842771 | 2.110018e-58 | -8.615850e-47 |
| Msa0998890 | Msa1363930 | 0.826379 | 2.802283e-54 | -8.615850e-47 |
| Msa1026850 | Msa1363930 | 0.812259 | 4.638675e-51 | -8.615850e-47 |
| Msa1052810 | Msa1363930 | 0.824126 | 9.558035e-54 | -8.615850e-47 |
| Msa0256350 | Msa1363930 | 0.809668 | 1.688447e-50 | -8.615850e-47 |
| Msa0270160 | Msa1363930 | 0.806245 | 9.032868e-50 | -8.615850e-47 |
| Msa0301250 | Msa1363930 | 0.830252 | 3.261395e-55 | -8.615850e-47 |
| Msa0304270 | Msa1363930 | 0.808190 | 3.498490e-50 | -8.615850e-47 |
| Msa1111820 | Msa1363930 | 0.822418 | 2.394496e-53 | -8.615850e-47 |
| Msa1124980 | Msa1363930 | 0.803954 | 2.723895e-49 | -8.615850e-47 |
| Msa1144630 | Msa1363930 | 0.999550 | 7.707424e-322 | -8.615850e-47 |
| Msa1165700 | Msa1363930 | 0.929018 | 1.266701e-92 | -8.615850e-47 |
| Msa0511760 | Msa1363930 | 0.841725 | 3.991351e-58 | -8.615850e-47 |
| Msa0514130 | Msa1363930 | 0.856514 | 3.056309e-62 | -8.615850e-47 |
| Msa0578010 | Msa1363930 | 0.893839 | 4.323541e-75 | -8.615850e-47 |
| Msa0589160 | Msa1363930 | 0.800158 | 1.643163e-48 | -8.615850e-47 |
| Msa0858190 | Msa1363930 | 0.810476 | 1.131271e-50 | -8.615850e-47 |
| Msa0863290 | Msa1363930 | 0.801151 | 1.030999e-48 | -8.615850e-47 |
| Msa0930360 | Msa1363930 | 0.920507 | 1.172734e-87 | -8.615850e-47 |
| Msa0930790 | Msa1363930 | 0.874999 | 4.352524e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363930 | MtrunA17_Chr7g0268451 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Msa1363930 | MtrunA17_Chr3g0129861 | 92.203 | 295 | 21 | 2 | 3 | 297 | 7 | 299 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363930 | AT3G04770.2 | 75.627 | 279 | 49 | 6 | 3 | 271 | 9 | 278 | 3.75e-148 | 417 |
| Msa1363930 | AT1G72370.2 | 79.283 | 251 | 39 | 3 | 2 | 240 | 7 | 256 | 1.35e-145 | 411 |
| Msa1363930 | AT1G72370.1 | 79.283 | 251 | 39 | 3 | 2 | 240 | 7 | 256 | 1.93e-145 | 410 |
| Msa1363930 | AT3G04770.1 | 88.384 | 198 | 23 | 0 | 2 | 199 | 8 | 205 | 2.52e-131 | 376 |
Find 127 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAGTGAGGTTGAGATTA+GGG | 0.200518 | tig0018101:+24037 | None:intergenic |
| GTTTACGACTTGGAATATTT+TGG | 0.206489 | tig0018101:-21611 | Msa1363930:three_prime_UTR |
| ACTAATCCAGATGTTACTTT+TGG | 0.236780 | tig0018101:+21687 | None:intergenic |
| AGGGATTTATATTATAAATC+TGG | 0.244718 | tig0018101:-23777 | Msa1363930:CDS |
| CTCAAATTTGCTCAGTATAC+TGG | 0.267475 | tig0018101:-23647 | Msa1363930:CDS |
| ATCGATCAAGTACCAGCTTC+TGG | 0.282672 | tig0018101:+22149 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+TGG | 0.286416 | tig0018101:+22687 | None:intergenic |
| GTTCAATCTGCTAGACCTTA+TGG | 0.290724 | tig0018101:-23683 | Msa1363930:CDS |
| TGCTTGCCCTTGTTGTTGGC+AGG | 0.316997 | tig0018101:+22600 | None:intergenic |
| CAGCAGTTCCTGCTGTCAAC+TGG | 0.338422 | tig0018101:-22178 | Msa1363930:CDS |
| TGAGTATGAAGAAATGAAAC+TGG | 0.352792 | tig0018101:+24108 | None:intergenic |
| TCTTGCTCCTTTGCCTCCTC+AGG | 0.364214 | tig0018101:+22326 | None:intergenic |
| ACTGTGCTTGCCCTTGTTGT+TGG | 0.371019 | tig0018101:+22596 | None:intergenic |
| ACAGTATAGGATGTCTGTTT+TGG | 0.375538 | tig0018101:-22578 | Msa1363930:CDS |
| GAACTGCATCATTCCATGTT+TGG | 0.376849 | tig0018101:+22213 | None:intergenic |
| AGCAGAGTGAGGTTGAGATT+AGG | 0.378530 | tig0018101:+24036 | None:intergenic |
| CAGGAGCAGGTATTTGTTGT+GGG | 0.383724 | tig0018101:+21800 | None:intergenic |
| GAAACCTGATGATCAGTTCT+TGG | 0.383788 | tig0018101:+23530 | None:intergenic |
| GTTGAGATTAGGGTTATGTA+TGG | 0.392297 | tig0018101:+24047 | None:intergenic |
| ATGGAGCAACTTCAACAGTT+AGG | 0.396196 | tig0018101:+24066 | None:intergenic |
| CCTTTCCCAAAAGTAACATC+TGG | 0.398118 | tig0018101:-21693 | Msa1363930:three_prime_UTR |
| GGGATTTATATTATAAATCT+GGG | 0.401340 | tig0018101:-23776 | Msa1363930:CDS |
| TTCCCAGCCAGTTGCTTGGA+TGG | 0.405766 | tig0018101:+21768 | None:intergenic |
| CATCGGCGGCAAGCATCATC+TGG | 0.408335 | tig0018101:+23960 | None:intergenic |
| AGCAGGCCATTGTCCATCAT+TGG | 0.409891 | tig0018101:+22244 | None:intergenic |
| ATCAGTGAGGATAAGAAGCC+TGG | 0.410991 | tig0018101:+23553 | None:intergenic |
| GCAGGCCATTGTCCATCATT+GGG | 0.413746 | tig0018101:+22245 | None:intergenic |
| ACTGGTGCCAATGCTATTGC+TGG | 0.415426 | tig0018101:-23629 | Msa1363930:CDS |
| CCAATCAAGGAAGCTGCTCT+TGG | 0.415479 | tig0018101:-22687 | Msa1363930:CDS |
| TTACCATGACATCCCACTTA+AGG | 0.419417 | tig0018101:+22508 | None:intergenic |
| GCAGGTATTTGTTGTGGGGC+TGG | 0.425106 | tig0018101:+21805 | None:intergenic |
| ACGAGGGGCGGCCATGGTGG+CGG | 0.425429 | tig0018101:+24009 | None:intergenic |
| TCGATCAAGTACCAGCTTCT+GGG | 0.429103 | tig0018101:+22150 | None:intergenic |
| ACAGCAGGAACTGCTGGAAT+AGG | 0.430588 | tig0018101:+22185 | None:intergenic |
| CTTATTCCCAGCCAGTTGCT+TGG | 0.433981 | tig0018101:+21764 | None:intergenic |
| CAGGTTCTCTATAAAAGAAC+AGG | 0.436315 | tig0018101:+22345 | None:intergenic |
| CAGAAGTATTGTTTACGACT+TGG | 0.447835 | tig0018101:-21621 | Msa1363930:three_prime_UTR |
| GAATGAAACTTGCATCTGAT+TGG | 0.451068 | tig0018101:+23583 | None:intergenic |
| AGTCCATCCAAGCAACTGGC+TGG | 0.454371 | tig0018101:-21771 | Msa1363930:CDS |
| GAAATGAAACTGGGTGGGTA+GGG | 0.457290 | tig0018101:+24118 | None:intergenic |
| CAGTTGACAGCAGGAACTGC+TGG | 0.458194 | tig0018101:+22179 | None:intergenic |
| CTATACATTATTTGAGATGT+GGG | 0.467804 | tig0018101:-21465 | Msa1363930:three_prime_UTR |
| TGATCCAAGAACTGATCATC+AGG | 0.468742 | tig0018101:-23534 | Msa1363930:intron |
| AAGTCAGTAATAGCATAATC+TGG | 0.469421 | tig0018101:+22284 | None:intergenic |
| CCATTCGCCCTGGCCTTAAG+TGG | 0.476474 | tig0018101:-22521 | Msa1363930:CDS |
| GCTATTACTGACTTTAATGC+AGG | 0.477186 | tig0018101:-22275 | Msa1363930:CDS |
| GTTGAGTCCATCCAAGCAAC+TGG | 0.477635 | tig0018101:-21775 | Msa1363930:CDS |
| GTATCACAGAAAGCAATTGT+TGG | 0.479071 | tig0018101:+22657 | None:intergenic |
| GGAAGGTAAATATAAATTGA+AGG | 0.482706 | tig0018101:+21715 | None:intergenic |
| GAGTTGACGAGGGGCGGCCA+TGG | 0.483920 | tig0018101:+24003 | None:intergenic |
| AACTGGGCAGCCCCAGAAGC+TGG | 0.486191 | tig0018101:-22161 | Msa1363930:intron |
| ATTGAACAATCATATCTTGT+GGG | 0.493138 | tig0018101:+23699 | None:intergenic |
| GCTTGGATGGACTCAACTCC+AGG | 0.495466 | tig0018101:+21781 | None:intergenic |
| GGAACTGCTGGAATAGGCTC+TGG | 0.497641 | tig0018101:+22191 | None:intergenic |
| TGGAGCAACTTCAACAGTTA+GGG | 0.498418 | tig0018101:+24067 | None:intergenic |
| GGGGCTGCCCAGTTGACAGC+AGG | 0.498864 | tig0018101:+22170 | None:intergenic |
| CCAGGAGCAGGTATTTGTTG+TGG | 0.503860 | tig0018101:+21799 | None:intergenic |
| TCTATACATTATTTGAGATG+TGG | 0.504242 | tig0018101:-21466 | Msa1363930:three_prime_UTR |
| AGCAGTTCCTGCTGTCAACT+GGG | 0.509125 | tig0018101:-22177 | Msa1363930:CDS |
| TTGTCTTGCAGCTGCAGGGG+GGG | 0.509610 | tig0018101:-21845 | Msa1363930:intron |
| CATGTTTGGTCGATAGCAGC+AGG | 0.511174 | tig0018101:+22227 | None:intergenic |
| CCACAACAAATACCTGCTCC+TGG | 0.512625 | tig0018101:-21799 | Msa1363930:CDS |
| TGTTTGTGTGCAGCCAATCA+AGG | 0.514122 | tig0018101:-22700 | Msa1363930:intron |
| ATGACATCCCACTTAAGGCC+AGG | 0.514173 | tig0018101:+22513 | None:intergenic |
| AGAACAGCTCTCTGTCCATA+AGG | 0.514765 | tig0018101:+23668 | None:intergenic |
| GCTTGCCCTTGTTGTTGGCA+GGG | 0.514834 | tig0018101:+22601 | None:intergenic |
| TAAACTAAGCAAATCATAGA+TGG | 0.515447 | tig0018101:+21429 | None:intergenic |
| AGAAATGAAACTGGGTGGGT+AGG | 0.516622 | tig0018101:+24117 | None:intergenic |
| AGATTTGTCTTGCAGCTGCA+GGG | 0.519344 | tig0018101:-21849 | Msa1363930:intron |
| TGTTTATTCATCAGTACATG+TGG | 0.521712 | tig0018101:-21373 | Msa1363930:three_prime_UTR |
| GCAGGTTCTATCCCCAATGA+TGG | 0.524423 | tig0018101:-22257 | Msa1363930:CDS |
| CCACTTAAGGCCAGGGCGAA+TGG | 0.524759 | tig0018101:+22521 | None:intergenic |
| GATTTGTCTTGCAGCTGCAG+GGG | 0.527935 | tig0018101:-21848 | Msa1363930:intron |
| ATCTTCAAGCGCCGTAACGA+TGG | 0.529765 | tig0018101:-23893 | Msa1363930:intron |
| TAGAGAACCTGAGGAGGCAA+AGG | 0.541067 | tig0018101:-22333 | Msa1363930:CDS |
| ATGGAATGTTACCATCGTTA+CGG | 0.545997 | tig0018101:+23882 | None:intergenic |
| GTAATAGCATAATCTGGTGC+AGG | 0.546158 | tig0018101:+22290 | None:intergenic |
| AACAAGGGCAAGCACAGTAT+AGG | 0.547955 | tig0018101:-22591 | Msa1363930:CDS |
| TTGACGAGGGGCGGCCATGG+TGG | 0.548180 | tig0018101:+24006 | None:intergenic |
| TGGCCTTAAGTGGGATGTCA+TGG | 0.555571 | tig0018101:-22511 | Msa1363930:intron |
| CTGCTGCTATCGACCAAACA+TGG | 0.557904 | tig0018101:-22226 | Msa1363930:CDS |
| GATTGAACAATCATATCTTG+TGG | 0.558514 | tig0018101:+23698 | None:intergenic |
| ACGTAGACCAAGAACCAGGA+GGG | 0.559386 | tig0018101:+21519 | None:intergenic |
| TTTAGTACCGAGATGGACAT+CGG | 0.561895 | tig0018101:+23943 | None:intergenic |
| GAAGGTAAATATAAATTGAA+GGG | 0.564937 | tig0018101:+21716 | None:intergenic |
| CGATCAAGTACCAGCTTCTG+GGG | 0.566204 | tig0018101:+22151 | None:intergenic |
| CTGAGAGAGTTGACGAGGGG+CGG | 0.567420 | tig0018101:+23997 | None:intergenic |
| TATAATTTCAGAATGTGTTG+AGG | 0.567493 | tig0018101:-21550 | Msa1363930:three_prime_UTR |
| ATGGACTCAACTCCAGGAGC+AGG | 0.568466 | tig0018101:+21787 | None:intergenic |
| ATCTGATTGGTAAAAGTACC+AGG | 0.569249 | tig0018101:+23596 | None:intergenic |
| ATTGCTGGAAGGCACACGCC+TGG | 0.569818 | tig0018101:-23614 | Msa1363930:CDS |
| CCTATGCGATATGTCGACAT+TGG | 0.570541 | tig0018101:-22627 | Msa1363930:CDS |
| CTCTGCTACTTCCGCCACCA+TGG | 0.571384 | tig0018101:-24020 | Msa1363930:exon |
| ATGCGTGGAACCATTCGCCC+TGG | 0.577456 | tig0018101:-22531 | Msa1363930:CDS |
| AAGTTTCATTCAGTGAGCCC+AGG | 0.582162 | tig0018101:-23571 | Msa1363930:CDS |
| AGGAGCAGGTATTTGTTGTG+GGG | 0.582996 | tig0018101:+21801 | None:intergenic |
| GTTTATTCATCAGTACATGT+GGG | 0.583446 | tig0018101:-21372 | Msa1363930:three_prime_UTR |
| ATTTGTCTTGCAGCTGCAGG+GGG | 0.583953 | tig0018101:-21847 | Msa1363930:intron |
| GTGCCTTCCAGCAATAGCAT+TGG | 0.585941 | tig0018101:+23622 | None:intergenic |
| TGAGGAGGCAAAGGAGCAAG+AGG | 0.586597 | tig0018101:-22324 | Msa1363930:CDS |
| GTCCATCCAAGCAACTGGCT+GGG | 0.586705 | tig0018101:-21770 | Msa1363930:CDS |
| TGGAATCCCTGCCAACAACA+AGG | 0.586772 | tig0018101:-22607 | Msa1363930:CDS |
| CTTGCCGCCGATGTCCATCT+CGG | 0.588724 | tig0018101:-23950 | Msa1363930:CDS |
| CTTTCTGAGAGAGTTGACGA+GGG | 0.590646 | tig0018101:+23993 | None:intergenic |
| ACAAACGTAGACCAAGAACC+AGG | 0.593302 | tig0018101:+21515 | None:intergenic |
| ATGAAGAAATGAAACTGGGT+GGG | 0.611379 | tig0018101:+24113 | None:intergenic |
| TCAGTGAGGATAAGAAGCCT+GGG | 0.611983 | tig0018101:+23554 | None:intergenic |
| CGTAGACCAAGAACCAGGAG+GGG | 0.612009 | tig0018101:+21520 | None:intergenic |
| TGACATCCCACTTAAGGCCA+GGG | 0.615254 | tig0018101:+22514 | None:intergenic |
| CATTCGCCCTGGCCTTAAGT+GGG | 0.617158 | tig0018101:-22520 | Msa1363930:CDS |
| TTTGTCTTGCAGCTGCAGGG+GGG | 0.617734 | tig0018101:-21846 | Msa1363930:intron |
| GGAATCCCTGCCAACAACAA+GGG | 0.619315 | tig0018101:-22606 | Msa1363930:CDS |
| AGGATGGTGTTGCAGATGCG+TGG | 0.623853 | tig0018101:-22546 | Msa1363930:CDS |
| TCTTTCTGAGAGAGTTGACG+AGG | 0.626351 | tig0018101:+23992 | None:intergenic |
| GTGCCAATGCTATTGCTGGA+AGG | 0.638251 | tig0018101:-23625 | Msa1363930:CDS |
| GTAGACCAAGAACCAGGAGG+GGG | 0.648699 | tig0018101:+21521 | None:intergenic |
| TTTCTGAGAGAGTTGACGAG+GGG | 0.657247 | tig0018101:+23994 | None:intergenic |
| CTATCCCCAATGATGGACAA+TGG | 0.660054 | tig0018101:-22250 | Msa1363930:CDS |
| CAGGCCATTGTCCATCATTG+GGG | 0.668561 | tig0018101:+22246 | None:intergenic |
| CCAATGTCGACATATCGCAT+AGG | 0.669426 | tig0018101:+22627 | None:intergenic |
| ACTGGCTGGGAATAAGCTAG+TGG | 0.675865 | tig0018101:-21757 | Msa1363930:exon |
| GAGTATGAAGAAATGAAACT+GGG | 0.682333 | tig0018101:+24109 | None:intergenic |
| GTGGCGGAAGTAGCAGAGTG+AGG | 0.695124 | tig0018101:+24025 | None:intergenic |
| AACGTAGACCAAGAACCAGG+AGG | 0.701621 | tig0018101:+21518 | None:intergenic |
| TATGAAGAAATGAAACTGGG+TGG | 0.709043 | tig0018101:+24112 | None:intergenic |
| GATCAGTTCTTGGATCAGTG+AGG | 0.719669 | tig0018101:+23540 | None:intergenic |
| AGTACCGAGATGGACATCGG+CGG | 0.738432 | tig0018101:+23946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTATTATAAGAAATT+TGG | - | tig0018101:22761-22780 | Msa1363930:intron | 10.0% |
| !!! | ATTAATTTTTGACTACATTT+TGG | + | tig0018101:21675-21694 | None:intergenic | 15.0% |
| !! | TGCATTTGTTTATTTATTTA+GGG | - | tig0018101:21707-21726 | Msa1363930:three_prime_UTR | 15.0% |
| !!! | AAGTTTTTTTATTTTAGCTT+TGG | - | tig0018101:22134-22153 | Msa1363930:intron | 15.0% |
| !! | TAATATGTTTATCCAAAATT+GGG | + | tig0018101:22160-22179 | None:intergenic | 15.0% |
| !!! | CTTGATTTTATATTCTATTA+TGG | + | tig0018101:22257-22276 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTATGTTATTGT+GGG | - | tig0018101:22305-22324 | Msa1363930:CDS | 15.0% |
| !! | ATATTATTAAAACAGCTTAT+AGG | + | tig0018101:22591-22610 | None:intergenic | 15.0% |
| !!! | TGTTTTAATAATATATTGTG+TGG | - | tig0018101:22597-22616 | Msa1363930:CDS | 15.0% |
| !!! | ACTATTTTTTCTTTTTGTAA+CGG | - | tig0018101:23018-23037 | Msa1363930:intron | 15.0% |
| !! | GTGCATTTGTTTATTTATTT+AGG | - | tig0018101:21706-21725 | Msa1363930:three_prime_UTR | 20.0% |
| !! | AGGGATTTATATTATAAATC+TGG | - | tig0018101:21726-21745 | Msa1363930:three_prime_UTR | 20.0% |
| !! | GGGATTTATATTATAAATCT+GGG | - | tig0018101:21727-21746 | Msa1363930:three_prime_UTR | 20.0% |
| !! | CTAATATGTTTATCCAAAAT+TGG | + | tig0018101:22161-22180 | None:intergenic | 20.0% |
| !! | CATGTATATATATGAATATG+CGG | + | tig0018101:22208-22227 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTATGTTATTG+TGG | - | tig0018101:22304-22323 | Msa1363930:CDS | 20.0% |
| !!! | TGTTTTTTTATGTTATTGTG+GGG | - | tig0018101:22306-22325 | Msa1363930:CDS | 20.0% |
| !! | TTAAGATGTTTATCCAAAAA+GGG | + | tig0018101:22484-22503 | None:intergenic | 20.0% |
| !! | ATTAAGATGTTTATCCAAAA+AGG | + | tig0018101:22485-22504 | None:intergenic | 20.0% |
| !! | GTAATAATAAGTGCTTATAT+AGG | + | tig0018101:22539-22558 | None:intergenic | 20.0% |
| !! | AAGTTAACGAAATAAATGTT+GGG | + | tig0018101:23537-23556 | None:intergenic | 20.0% |
| !! | GAAGGTAAATATAAATTGAA+GGG | + | tig0018101:23790-23809 | None:intergenic | 20.0% |
| !! | ATAATTTAGGGTTTGGAAAA+TGG | + | tig0018101:21643-21662 | None:intergenic | 25.0% |
| !! | AAATTGGATAATTTAGGGTT+TGG | + | tig0018101:21650-21669 | None:intergenic | 25.0% |
| ! | TGGTGAAATTGGATAATTTA+GGG | + | tig0018101:21655-21674 | None:intergenic | 25.0% |
| ! | TTGGTGAAATTGGATAATTT+AGG | + | tig0018101:21656-21675 | None:intergenic | 25.0% |
| ! | TTATAAATCTGGGAAAAACA+TGG | - | tig0018101:21737-21756 | Msa1363930:three_prime_UTR | 25.0% |
| ! | TATAAATCTGGGAAAAACAT+GGG | - | tig0018101:21738-21757 | Msa1363930:three_prime_UTR | 25.0% |
| ! | ATTGAACAATCATATCTTGT+GGG | + | tig0018101:21807-21826 | None:intergenic | 25.0% |
| !!! | TGATTCATTGTTTTATGTGT+AGG | - | tig0018101:22027-22046 | Msa1363930:intron | 25.0% |
| !!! | GATTCATTGTTTTATGTGTA+GGG | - | tig0018101:22028-22047 | Msa1363930:intron | 25.0% |
| ! | AGTTAACGAAATAAATGTTG+GGG | + | tig0018101:23536-23555 | None:intergenic | 25.0% |
| ! | CAAGTTAACGAAATAAATGT+TGG | + | tig0018101:23538-23557 | None:intergenic | 25.0% |
| !! | TTCTCTATTTAAGATTTGTC+AGG | - | tig0018101:23562-23581 | Msa1363930:CDS | 25.0% |
| !! | TCTCTATTTAAGATTTGTCA+GGG | - | tig0018101:23563-23582 | Msa1363930:CDS | 25.0% |
| ! | GGAAGGTAAATATAAATTGA+AGG | + | tig0018101:23791-23810 | None:intergenic | 25.0% |
| ! | TATAATTTCAGAATGTGTTG+AGG | - | tig0018101:23953-23972 | Msa1363930:CDS | 25.0% |
| !! | TCTATACATTATTTGAGATG+TGG | - | tig0018101:24037-24056 | Msa1363930:five_prime_UTR | 25.0% |
| !! | CTATACATTATTTGAGATGT+GGG | - | tig0018101:24038-24057 | Msa1363930:five_prime_UTR | 25.0% |
| ! | TAAACTAAGCAAATCATAGA+TGG | + | tig0018101:24077-24096 | None:intergenic | 25.0% |
| GAGTATGAAGAAATGAAACT+GGG | + | tig0018101:21397-21416 | None:intergenic | 30.0% | |
| TGAGTATGAAGAAATGAAAC+TGG | + | tig0018101:21398-21417 | None:intergenic | 30.0% | |
| !! | TGACTACATTTTGGTGAAAT+TGG | + | tig0018101:21666-21685 | None:intergenic | 30.0% |
| GATTGAACAATCATATCTTG+TGG | + | tig0018101:21808-21827 | None:intergenic | 30.0% | |
| AACTTTGCACAAAAACCAAT+GGG | + | tig0018101:22444-22463 | None:intergenic | 30.0% | |
| AAACTTTGCACAAAAACCAA+TGG | + | tig0018101:22445-22464 | None:intergenic | 30.0% | |
| !!! | ATTTTAGCTTGAACCCTTTT+TGG | - | tig0018101:22468-22487 | Msa1363930:intron | 30.0% |
| AAGTGCTTATATAGGATATG+AGG | + | tig0018101:22531-22550 | None:intergenic | 30.0% | |
| AATATATTGTGTGGAGCTTA+TGG | - | tig0018101:22606-22625 | Msa1363930:CDS | 30.0% | |
| TTTGATCAAGTCTATTGTCT+TGG | - | tig0018101:23114-23133 | Msa1363930:intron | 30.0% | |
| TTGATCAAGTCTATTGTCTT+GGG | - | tig0018101:23115-23134 | Msa1363930:intron | 30.0% | |
| AAGTCAGTAATAGCATAATC+TGG | + | tig0018101:23222-23241 | None:intergenic | 30.0% | |
| CAAGGTAAATCAATGTTGAA+GGG | + | tig0018101:23427-23446 | None:intergenic | 30.0% | |
| TCAAGGTAAATCAATGTTGA+AGG | + | tig0018101:23428-23447 | None:intergenic | 30.0% | |
| ! | CTCTATTTAAGATTTGTCAG+GGG | - | tig0018101:23564-23583 | Msa1363930:CDS | 30.0% |
| !!! | CTAATCCAGATGTTACTTTT+GGG | + | tig0018101:23818-23837 | None:intergenic | 30.0% |
| !!! | ACTAATCCAGATGTTACTTT+TGG | + | tig0018101:23819-23838 | None:intergenic | 30.0% |
| !!! | AACATCTGGATTAGTCTTTT+TGG | - | tig0018101:23824-23843 | Msa1363930:intron | 30.0% |
| !! | GTTTACGACTTGGAATATTT+TGG | - | tig0018101:23892-23911 | Msa1363930:intron | 30.0% |
| TGTTTATTCATCAGTACATG+TGG | - | tig0018101:24130-24149 | Msa1363930:five_prime_UTR | 30.0% | |
| GTTTATTCATCAGTACATGT+GGG | - | tig0018101:24131-24150 | Msa1363930:five_prime_UTR | 30.0% | |
| ATGAAGAAATGAAACTGGGT+GGG | + | tig0018101:21393-21412 | None:intergenic | 35.0% | |
| TATGAAGAAATGAAACTGGG+TGG | + | tig0018101:21394-21413 | None:intergenic | 35.0% | |
| GTTGAGATTAGGGTTATGTA+TGG | + | tig0018101:21459-21478 | None:intergenic | 35.0% | |
| TAAAAACTGCGACTTTCAGA+TGG | - | tig0018101:21579-21598 | Msa1363930:three_prime_UTR | 35.0% | |
| ATGGAATGTTACCATCGTTA+CGG | + | tig0018101:21624-21643 | None:intergenic | 35.0% | |
| ! | CTCAAATTTGCTCAGTATAC+TGG | - | tig0018101:21856-21875 | Msa1363930:intron | 35.0% |
| !! | ATCTGATTGGTAAAAGTACC+AGG | + | tig0018101:21910-21929 | None:intergenic | 35.0% |
| GAATGAAACTTGCATCTGAT+TGG | + | tig0018101:21923-21942 | None:intergenic | 35.0% | |
| !!! | TTTTAGCTTTGGCCCAATTT+TGG | - | tig0018101:22145-22164 | Msa1363930:intron | 35.0% |
| AAGCACTTGTAAGTCTGTTT+GGG | + | tig0018101:22382-22401 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAGTCTGTT+TGG | + | tig0018101:22383-22402 | None:intergenic | 35.0% | |
| ACTTTGCACAAAAACCAATG+GGG | + | tig0018101:22443-22462 | None:intergenic | 35.0% | |
| AAGCACTTGTAAACCAACTT+GGG | + | tig0018101:22673-22692 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAACCAACT+TGG | + | tig0018101:22674-22693 | None:intergenic | 35.0% | |
| GACAATCTGGTTATTAGGTT+TGG | + | tig0018101:22721-22740 | None:intergenic | 35.0% | |
| AAGCAGACAATCTGGTTATT+AGG | + | tig0018101:22726-22745 | None:intergenic | 35.0% | |
| GTATCACAGAAAGCAATTGT+TGG | + | tig0018101:22849-22868 | None:intergenic | 35.0% | |
| ! | ACAGTATAGGATGTCTGTTT+TGG | - | tig0018101:22925-22944 | Msa1363930:intron | 35.0% |
| ! | CAATGTGAAGTATCCATATG+TGG | - | tig0018101:23060-23079 | Msa1363930:intron | 35.0% |
| CAGGTTCTCTATAAAAGAAC+AGG | + | tig0018101:23161-23180 | None:intergenic | 35.0% | |
| ! | GTTCTTTTATAGAGAACCTG+AGG | - | tig0018101:23161-23180 | Msa1363930:intron | 35.0% |
| !! | GCTATTACTGACTTTAATGC+AGG | - | tig0018101:23228-23247 | Msa1363930:intron | 35.0% |
| ATCAAAGCTGAGAGATATCA+AGG | + | tig0018101:23445-23464 | None:intergenic | 35.0% | |
| AGAGGAAATTTGAGAGATCA+AGG | + | tig0018101:23471-23490 | None:intergenic | 35.0% | |
| ATTTCCTCTAATCCTGTCAT+TGG | - | tig0018101:23482-23501 | Msa1363930:intron | 35.0% | |
| AATTAGCAAATGCCAATGAC+AGG | + | tig0018101:23497-23516 | None:intergenic | 35.0% | |
| !!! | CAGATGTTACTTTTGGGAAA+GGG | + | tig0018101:23812-23831 | None:intergenic | 35.0% |
| !! | CAGAAGTATTGTTTACGACT+TGG | - | tig0018101:23882-23901 | Msa1363930:intron | 35.0% |
| !!! | GGGTAGGGTTTTTAAGTTCT+TGG | + | tig0018101:21373-21392 | None:intergenic | 40.0% |
| TGGAGCAACTTCAACAGTTA+GGG | + | tig0018101:21439-21458 | None:intergenic | 40.0% | |
| ATGGAGCAACTTCAACAGTT+AGG | + | tig0018101:21440-21459 | None:intergenic | 40.0% | |
| ! | TTTAGTACCGAGATGGACAT+CGG | + | tig0018101:21563-21582 | None:intergenic | 40.0% |
| GTTCAATCTGCTAGACCTTA+TGG | - | tig0018101:21820-21839 | Msa1363930:CDS | 40.0% | |
| TGATCCAAGAACTGATCATC+AGG | - | tig0018101:21969-21988 | Msa1363930:intron | 40.0% | |
| GAAACCTGATGATCAGTTCT+TGG | + | tig0018101:21976-21995 | None:intergenic | 40.0% | |
| ATGTTATTGTGGGGAGCTTA+TGG | - | tig0018101:22315-22334 | Msa1363930:CDS | 40.0% | |
| ACAGACAAAAGCAGACAATC+TGG | + | tig0018101:22734-22753 | None:intergenic | 40.0% | |
| !!! | AGGATGTCTGTTTTGGCTTT+TGG | - | tig0018101:22932-22951 | Msa1363930:intron | 40.0% |
| TTACCATGACATCCCACTTA+AGG | + | tig0018101:22998-23017 | None:intergenic | 40.0% | |
| ! | TCTTGGGTTTTCTTTGATGC+AGG | - | tig0018101:23131-23150 | Msa1363930:intron | 40.0% |
| ! | CTTTTATAGAGAACCTGAGG+AGG | - | tig0018101:23164-23183 | Msa1363930:intron | 40.0% |
| GTAATAGCATAATCTGGTGC+AGG | + | tig0018101:23216-23235 | None:intergenic | 40.0% | |
| GAACTGCATCATTCCATGTT+TGG | + | tig0018101:23293-23312 | None:intergenic | 40.0% | |
| AATGCCAATGACAGGATTAG+AGG | + | tig0018101:23489-23508 | None:intergenic | 40.0% | |
| !!! | TGTTACTTTTGGGAAAGGGA+AGG | + | tig0018101:23808-23827 | None:intergenic | 40.0% |
| !!! | CCAGATGTTACTTTTGGGAA+AGG | + | tig0018101:23813-23832 | None:intergenic | 40.0% |
| CCTTTCCCAAAAGTAACATC+TGG | - | tig0018101:23810-23829 | Msa1363930:intron | 40.0% | |
| GAAATGAAACTGGGTGGGTA+GGG | + | tig0018101:21388-21407 | None:intergenic | 45.0% | |
| AGAAATGAAACTGGGTGGGT+AGG | + | tig0018101:21389-21408 | None:intergenic | 45.0% | |
| GCAGAGTGAGGTTGAGATTA+GGG | + | tig0018101:21469-21488 | None:intergenic | 45.0% | |
| AGCAGAGTGAGGTTGAGATT+AGG | + | tig0018101:21470-21489 | None:intergenic | 45.0% | |
| ! | TTTCTGAGAGAGTTGACGAG+GGG | + | tig0018101:21512-21531 | None:intergenic | 45.0% |
| ! | CTTTCTGAGAGAGTTGACGA+GGG | + | tig0018101:21513-21532 | None:intergenic | 45.0% |
| ! | TCTTTCTGAGAGAGTTGACG+AGG | + | tig0018101:21514-21533 | None:intergenic | 45.0% |
| !!! | CGCAGTTTTTAGTACCGAGA+TGG | + | tig0018101:21570-21589 | None:intergenic | 45.0% |
| AGAACAGCTCTCTGTCCATA+AGG | + | tig0018101:21838-21857 | None:intergenic | 45.0% | |
| AAGTTTCATTCAGTGAGCCC+AGG | - | tig0018101:21932-21951 | Msa1363930:intron | 45.0% | |
| TCAGTGAGGATAAGAAGCCT+GGG | + | tig0018101:21952-21971 | None:intergenic | 45.0% | |
| ATCAGTGAGGATAAGAAGCC+TGG | + | tig0018101:21953-21972 | None:intergenic | 45.0% | |
| GATCAGTTCTTGGATCAGTG+AGG | + | tig0018101:21966-21985 | None:intergenic | 45.0% | |
| CAAAAACCAATGGGGCTGTT+TGG | + | tig0018101:22435-22454 | None:intergenic | 45.0% | |
| !! | GTTTTAAGCCTCTCCCAAGT+TGG | - | tig0018101:22657-22676 | Msa1363930:CDS | 45.0% |
| CTTGTAAACCAACTTGGGAG+AGG | + | tig0018101:22668-22687 | None:intergenic | 45.0% | |
| TGTTTGTGTGCAGCCAATCA+AGG | - | tig0018101:22803-22822 | Msa1363930:intron | 45.0% | |
| CCAATGTCGACATATCGCAT+AGG | + | tig0018101:22879-22898 | None:intergenic | 45.0% | |
| CCTATGCGATATGTCGACAT+TGG | - | tig0018101:22876-22895 | Msa1363930:intron | 45.0% | |
| AACAAGGGCAAGCACAGTAT+AGG | - | tig0018101:22912-22931 | Msa1363930:intron | 45.0% | |
| !!! | GTCTGTTTTGGCTTTTGGCT+AGG | - | tig0018101:22937-22956 | Msa1363930:intron | 45.0% |
| !!! | GTTTTGGCTTTTGGCTAGGA+TGG | - | tig0018101:22941-22960 | Msa1363930:intron | 45.0% |
| TGGGGAACAATTGCCACATA+TGG | + | tig0018101:23076-23095 | None:intergenic | 45.0% | |
| ATGTGGCAATTGTTCCCCAT+CGG | - | tig0018101:23077-23096 | Msa1363930:intron | 45.0% | |
| ! | TTGTTCCCCATCGGTTGAAT+TGG | - | tig0018101:23086-23105 | Msa1363930:intron | 45.0% |
| AACCTGCCAATTCAACCGAT+GGG | + | tig0018101:23095-23114 | None:intergenic | 45.0% | |
| AAACCTGCCAATTCAACCGA+TGG | + | tig0018101:23096-23115 | None:intergenic | 45.0% | |
| !! | CTATCCCCAATGATGGACAA+TGG | - | tig0018101:23253-23272 | Msa1363930:intron | 45.0% |
| TCGATCAAGTACCAGCTTCT+GGG | + | tig0018101:23356-23375 | None:intergenic | 45.0% | |
| ATCGATCAAGTACCAGCTTC+TGG | + | tig0018101:23357-23376 | None:intergenic | 45.0% | |
| TAGATTTGTCTTGCAGCTGC+AGG | - | tig0018101:23653-23672 | Msa1363930:CDS | 45.0% | |
| AGATTTGTCTTGCAGCTGCA+GGG | - | tig0018101:23654-23673 | Msa1363930:CDS | 45.0% | |
| !! | AGGAGCAGGTATTTGTTGTG+GGG | + | tig0018101:23705-23724 | None:intergenic | 45.0% |
| !! | CAGGAGCAGGTATTTGTTGT+GGG | + | tig0018101:23706-23725 | None:intergenic | 45.0% |
| ACAAACGTAGACCAAGAACC+AGG | + | tig0018101:23991-24010 | None:intergenic | 45.0% | |
| ! | ATCTTCAAGCGCCGTAACGA+TGG | - | tig0018101:21610-21629 | Msa1363930:three_prime_UTR | 50.0% |
| ! | ACTGGTGCCAATGCTATTGC+TGG | - | tig0018101:21874-21893 | Msa1363930:intron | 50.0% |
| GTGCCAATGCTATTGCTGGA+AGG | - | tig0018101:21878-21897 | Msa1363930:intron | 50.0% | |
| GTGCCTTCCAGCAATAGCAT+TGG | + | tig0018101:21884-21903 | None:intergenic | 50.0% | |
| GTCAATCCAAACAGCCCCAT+TGG | - | tig0018101:22426-22445 | Msa1363930:intron | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+TGG | + | tig0018101:22819-22838 | None:intergenic | 50.0% | |
| CCAATCAAGGAAGCTGCTCT+TGG | - | tig0018101:22816-22835 | Msa1363930:intron | 50.0% | |
| TGGAATCCCTGCCAACAACA+AGG | - | tig0018101:22896-22915 | Msa1363930:intron | 50.0% | |
| GGAATCCCTGCCAACAACAA+GGG | - | tig0018101:22897-22916 | Msa1363930:intron | 50.0% | |
| ! | ACTGTGCTTGCCCTTGTTGT+TGG | + | tig0018101:22910-22929 | None:intergenic | 50.0% |
| TGACATCCCACTTAAGGCCA+GGG | + | tig0018101:22992-23011 | None:intergenic | 50.0% | |
| ATGACATCCCACTTAAGGCC+AGG | + | tig0018101:22993-23012 | None:intergenic | 50.0% | |
| ! | TGGCCTTAAGTGGGATGTCA+TGG | - | tig0018101:22992-23011 | Msa1363930:intron | 50.0% |
| ACCTGCCAATTCAACCGATG+GGG | + | tig0018101:23094-23113 | None:intergenic | 50.0% | |
| TAGAGAACCTGAGGAGGCAA+AGG | - | tig0018101:23170-23189 | Msa1363930:intron | 50.0% | |
| GCAGGTTCTATCCCCAATGA+TGG | - | tig0018101:23246-23265 | Msa1363930:intron | 50.0% | |
| CAGGCCATTGTCCATCATTG+GGG | + | tig0018101:23260-23279 | None:intergenic | 50.0% | |
| GCAGGCCATTGTCCATCATT+GGG | + | tig0018101:23261-23280 | None:intergenic | 50.0% | |
| AGCAGGCCATTGTCCATCAT+TGG | + | tig0018101:23262-23281 | None:intergenic | 50.0% | |
| CATGTTTGGTCGATAGCAGC+AGG | + | tig0018101:23279-23298 | None:intergenic | 50.0% | |
| CTGCTGCTATCGACCAAACA+TGG | - | tig0018101:23277-23296 | Msa1363930:intron | 50.0% | |
| ACAGCAGGAACTGCTGGAAT+AGG | + | tig0018101:23321-23340 | None:intergenic | 50.0% | |
| AGCAGTTCCTGCTGTCAACT+GGG | - | tig0018101:23326-23345 | Msa1363930:intron | 50.0% | |
| CGATCAAGTACCAGCTTCTG+GGG | + | tig0018101:23355-23374 | None:intergenic | 50.0% | |
| GATTTGTCTTGCAGCTGCAG+GGG | - | tig0018101:23655-23674 | Msa1363930:CDS | 50.0% | |
| ATTTGTCTTGCAGCTGCAGG+GGG | - | tig0018101:23656-23675 | Msa1363930:CDS | 50.0% | |
| ! | CCAGGAGCAGGTATTTGTTG+TGG | + | tig0018101:23707-23726 | None:intergenic | 50.0% |
| CCACAACAAATACCTGCTCC+TGG | - | tig0018101:23704-23723 | Msa1363930:CDS | 50.0% | |
| GTTGAGTCCATCCAAGCAAC+TGG | - | tig0018101:23728-23747 | Msa1363930:CDS | 50.0% | |
| CTTATTCCCAGCCAGTTGCT+TGG | + | tig0018101:23742-23761 | None:intergenic | 50.0% | |
| ACTGGCTGGGAATAAGCTAG+TGG | - | tig0018101:23746-23765 | Msa1363930:CDS | 50.0% | |
| ACGTAGACCAAGAACCAGGA+GGG | + | tig0018101:23987-24006 | None:intergenic | 50.0% | |
| AACGTAGACCAAGAACCAGG+AGG | + | tig0018101:23988-24007 | None:intergenic | 50.0% | |
| ! | AGTACCGAGATGGACATCGG+CGG | + | tig0018101:21560-21579 | None:intergenic | 55.0% |
| !! | GCTTGCCCTTGTTGTTGGCA+GGG | + | tig0018101:22905-22924 | None:intergenic | 55.0% |
| !! | TGCTTGCCCTTGTTGTTGGC+AGG | + | tig0018101:22906-22925 | None:intergenic | 55.0% |
| !! | AGGATGGTGTTGCAGATGCG+TGG | - | tig0018101:22957-22976 | Msa1363930:intron | 55.0% |
| !! | CATTCGCCCTGGCCTTAAGT+GGG | - | tig0018101:22983-23002 | Msa1363930:intron | 55.0% |
| ! | TCCCCATCGGTTGAATTGGC+AGG | - | tig0018101:23090-23109 | Msa1363930:intron | 55.0% |
| TCTTGCTCCTTTGCCTCCTC+AGG | + | tig0018101:23180-23199 | None:intergenic | 55.0% | |
| TGAGGAGGCAAAGGAGCAAG+AGG | - | tig0018101:23179-23198 | Msa1363930:intron | 55.0% | |
| GGAACTGCTGGAATAGGCTC+TGG | + | tig0018101:23315-23334 | None:intergenic | 55.0% | |
| CAGTTGACAGCAGGAACTGC+TGG | + | tig0018101:23327-23346 | None:intergenic | 55.0% | |
| CAGCAGTTCCTGCTGTCAAC+TGG | - | tig0018101:23325-23344 | Msa1363930:intron | 55.0% | |
| TTTGTCTTGCAGCTGCAGGG+GGG | - | tig0018101:23657-23676 | Msa1363930:CDS | 55.0% | |
| !! | GCAGGTATTTGTTGTGGGGC+TGG | + | tig0018101:23701-23720 | None:intergenic | 55.0% |
| ATGGACTCAACTCCAGGAGC+AGG | + | tig0018101:23719-23738 | None:intergenic | 55.0% | |
| ! | GCTTGGATGGACTCAACTCC+AGG | + | tig0018101:23725-23744 | None:intergenic | 55.0% |
| AGTCCATCCAAGCAACTGGC+TGG | - | tig0018101:23732-23751 | Msa1363930:CDS | 55.0% | |
| GTCCATCCAAGCAACTGGCT+GGG | - | tig0018101:23733-23752 | Msa1363930:CDS | 55.0% | |
| TTCCCAGCCAGTTGCTTGGA+TGG | + | tig0018101:23738-23757 | None:intergenic | 55.0% | |
| TTGAGGTGATTTCCCCCTCC+TGG | - | tig0018101:23970-23989 | Msa1363930:CDS | 55.0% | |
| ! | GATTTCCCCCTCCTGGTTCT+TGG | - | tig0018101:23977-23996 | Msa1363930:CDS | 55.0% |
| GTAGACCAAGAACCAGGAGG+GGG | + | tig0018101:23985-24004 | None:intergenic | 55.0% | |
| CGTAGACCAAGAACCAGGAG+GGG | + | tig0018101:23986-24005 | None:intergenic | 55.0% | |
| ! | GTGGCGGAAGTAGCAGAGTG+AGG | + | tig0018101:21481-21500 | None:intergenic | 60.0% |
| ! | CTCTGCTACTTCCGCCACCA+TGG | - | tig0018101:21483-21502 | Msa1363930:three_prime_UTR | 60.0% |
| CTGAGAGAGTTGACGAGGGG+CGG | + | tig0018101:21509-21528 | None:intergenic | 60.0% | |
| CATCGGCGGCAAGCATCATC+TGG | + | tig0018101:21546-21565 | None:intergenic | 60.0% | |
| CTTGCCGCCGATGTCCATCT+CGG | - | tig0018101:21553-21572 | Msa1363930:three_prime_UTR | 60.0% | |
| ! | ATTGCTGGAAGGCACACGCC+TGG | - | tig0018101:21889-21908 | Msa1363930:intron | 60.0% |
| ATGCGTGGAACCATTCGCCC+TGG | - | tig0018101:22972-22991 | Msa1363930:intron | 60.0% | |
| CCACTTAAGGCCAGGGCGAA+TGG | + | tig0018101:22985-23004 | None:intergenic | 60.0% | |
| !! | CCATTCGCCCTGGCCTTAAG+TGG | - | tig0018101:22982-23001 | Msa1363930:intron | 60.0% |
| TTGTCTTGCAGCTGCAGGGG+GGG | - | tig0018101:23658-23677 | Msa1363930:CDS | 60.0% | |
| AACTGGGCAGCCCCAGAAGC+TGG | - | tig0018101:23342-23361 | Msa1363930:intron | 65.0% | |
| TTGCAGCTGCAGGGGGGGAT+TGG | - | tig0018101:23663-23682 | Msa1363930:CDS | 65.0% | |
| TGCAGCTGCAGGGGGGGATT+GGG | - | tig0018101:23664-23683 | Msa1363930:CDS | 65.0% | |
| TTGACGAGGGGCGGCCATGG+TGG | + | tig0018101:21500-21519 | None:intergenic | 70.0% | |
| GAGTTGACGAGGGGCGGCCA+TGG | + | tig0018101:21503-21522 | None:intergenic | 70.0% | |
| GGGGCTGCCCAGTTGACAGC+AGG | + | tig0018101:23336-23355 | None:intergenic | 70.0% | |
| GCAGCTGCAGGGGGGGATTG+GGG | - | tig0018101:23665-23684 | Msa1363930:CDS | 70.0% | |
| ACGAGGGGCGGCCATGGTGG+CGG | + | tig0018101:21497-21516 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018101 | gene | 21364 | 24161 | 21364 | ID=Msa1363930;Name=Msa1363930 |
| tig0018101 | mRNA | 21364 | 24161 | 21364 | ID=Msa1363930-mRNA-1;Parent=Msa1363930;Name=Msa1363930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=138|1|1|1|1|1|5|401|297 |
| tig0018101 | exon | 21364 | 21856 | 21364 | ID=Msa1363930-mRNA-1:exon:13773;Parent=Msa1363930-mRNA-1 |
| tig0018101 | exon | 22162 | 22372 | 22162 | ID=Msa1363930-mRNA-1:exon:13772;Parent=Msa1363930-mRNA-1 |
| tig0018101 | exon | 22512 | 22709 | 22512 | ID=Msa1363930-mRNA-1:exon:13771;Parent=Msa1363930-mRNA-1 |
| tig0018101 | exon | 23535 | 23797 | 23535 | ID=Msa1363930-mRNA-1:exon:13770;Parent=Msa1363930-mRNA-1 |
| tig0018101 | exon | 23894 | 24161 | 23894 | ID=Msa1363930-mRNA-1:exon:13769;Parent=Msa1363930-mRNA-1 |
| tig0018101 | five_prime_UTR | 24024 | 24161 | 24024 | ID=Msa1363930-mRNA-1:five_prime_utr;Parent=Msa1363930-mRNA-1 |
| tig0018101 | CDS | 23894 | 24023 | 23894 | ID=Msa1363930-mRNA-1:cds;Parent=Msa1363930-mRNA-1 |
| tig0018101 | CDS | 23535 | 23797 | 23535 | ID=Msa1363930-mRNA-1:cds;Parent=Msa1363930-mRNA-1 |
| tig0018101 | CDS | 22512 | 22709 | 22512 | ID=Msa1363930-mRNA-1:cds;Parent=Msa1363930-mRNA-1 |
| tig0018101 | CDS | 22162 | 22372 | 22162 | ID=Msa1363930-mRNA-1:cds;Parent=Msa1363930-mRNA-1 |
| tig0018101 | CDS | 21765 | 21856 | 21765 | ID=Msa1363930-mRNA-1:cds;Parent=Msa1363930-mRNA-1 |
| tig0018101 | three_prime_UTR | 21364 | 21764 | 21364 | ID=Msa1363930-mRNA-1:three_prime_utr;Parent=Msa1363930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
