AlfalfaGEDB | Msa0870280

M. sativa cultivar zhongmu-4 / Msa0870280

KEGG: K00512|K07408
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870280	XP_003618366.2	89.266	531	56	1	1	530	1	531	0.0	983

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870280	sp\|O49859\|C82A4_SOYBN	61.654	532	195	7	1	530	1	525	0.0	681

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870280	G7KJF6	89.266	531	56	1	1	530	1	531	0.0	983

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0166190	Msa0870280	0.802305	5.974571e-49	-8.615850e-47
Msa0216150	Msa0870280	-0.800881	1.170595e-48	-8.615850e-47
Msa0531050	Msa0870280	0.804265	2.347441e-49	-8.615850e-47
Msa0565700	Msa0870280	0.804808	1.808033e-49	-8.615850e-47
Msa0600350	Msa0870280	0.810531	1.100440e-50	-8.615850e-47
Msa0682110	Msa0870280	0.804852	1.770077e-49	-8.615850e-47
Msa0682160	Msa0870280	0.803346	3.642605e-49	-8.615850e-47
Msa0712880	Msa0870280	0.805003	1.646590e-49	-8.615850e-47
Msa0870280	Msa0873910	0.821220	4.532482e-53	-8.615850e-47
Msa0870280	Msa0906660	0.812926	3.315364e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0870280	MtrunA17_Chr6g0451781	84.717	530	80	1	1	530	36	564	910
Msa0870280	MtrunA17_Chr3g0082701	71.698	530	148	2	1	528	1	530	785
Msa0870280	MtrunA17_Chr6g0451691	69.159	535	160	3	1	530	1	535	764
Msa0870280	MtrunA17_Chr6g0451751	68.165	534	163	4	1	530	1	531	748
Msa0870280	MtrunA17_Chr6g0451741	67.603	534	168	3	1	530	21	553	745
Msa0870280	MtrunA17_Chr4g0008101	66.229	533	176	3	1	530	1	532	730
Msa0870280	MtrunA17_Chr6g0451641	61.770	531	195	7	1	530	1	524	679
Msa0870280	MtrunA17_Chr6g0466941	57.955	528	217	4	5	530	1	525	647
Msa0870280	MtrunA17_Chr6g0466901	56.571	525	222	5	5	527	1	521	631
Msa0870280	MtrunA17_Chr6g0451801	88.509	322	36	1	1	321	1	322	589

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870280	AT4G31940.1	48.479	526	254	8	14	527	3	523	6.05e-174	501
Msa0870280	AT4G31970.1	48.092	524	256	8	15	527	4	522	3.58e-169	489
Msa0870280	AT4G31950.1	46.784	513	248	9	18	522	11	506	2.48e-151	443
Msa0870280	AT2G25160.1	42.669	532	290	8	1	529	1	520	4.21e-143	422
Msa0870280	AT3G25180.1	42.481	532	283	9	5	530	1	515	1.69e-133	397
Msa0870280	AT5G07990.1	36.484	529	303	9	7	527	5	508	2.54e-108	333
Msa0870280	AT4G37430.1	34.834	511	309	9	16	521	1	492	3.53e-101	314
Msa0870280	AT4G37320.1	36.117	515	291	10	16	521	3	488	2.74e-99	309
Msa0870280	AT4G37400.1	37.474	475	271	9	48	521	40	489	4.74e-97	303
Msa0870280	AT4G37330.1	36.667	510	284	10	19	521	8	485	1.37e-96	302

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Find 123 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGATGCATTTGTTA+GGG	0.371067	6_1:+4674814	Msa0870280:CDS
AAAGAGGCTCCTATAGTTCA+AGG	0.443196	6_1:+4674240	Msa0870280:CDS
AAAGTTGATGCATTTGTTAG+GGG	0.580261	6_1:+4674815	Msa0870280:CDS
AAAGTTTCATTCATATCAAT+AGG	0.375617	6_1:-4676077	None:intergenic
AACTAGTGTTACCCTTACAT+GGG	0.649999	6_1:+4675578	Msa0870280:CDS
AAGAGGCTCCTATAGTTCAA+GGG	0.582947	6_1:+4674241	Msa0870280:CDS
AAGGAGTACGGGTGAGAAGG+AGG	0.506201	6_1:+4674968	Msa0870280:CDS
AATCTCAAGAGGAGTTGTTT+TGG	0.382931	6_1:-4676114	None:intergenic
AATCTGATACCATAATCAAA+GGG	0.477341	6_1:+4675063	Msa0870280:CDS
AATGGATCTGGCCAAACATT+GGG	0.451405	6_1:-4675867	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATCACTTTATAGAACCTT+AGG	+	chr6_1:4674306-4674325	Msa0870280:CDS	30.0%
ATGTTTCACGAAAATTGACT+TGG	+	chr6_1:4674419-4674438	Msa0870280:CDS	30.0%
TTCATATCTCAGAAGTTCAA+AGG	+	chr6_1:4674598-4674617	Msa0870280:CDS	30.0%
ATGCCATTCCTTTACTAAAA+TGG	+	chr6_1:4674853-4674872	Msa0870280:CDS	30.0%
GAATCTGATACCATAATCAA+AGG	+	chr6_1:4675062-4675081	Msa0870280:CDS	30.0%
ATCTGATACCATAATCAAAG+GGG	+	chr6_1:4675064-4675083	Msa0870280:CDS	30.0%
TCATGTAAAAAAACTGCTCT+TGG	-	chr6_1:4675215-4675234	None:intergenic	30.0%
TAATGTTAAACACGTTGGAA+TGG	+	chr6_1:4675431-4675450	Msa0870280:intron	30.0%
TCATTTACAGAACTTAATCG+CGG	+	chr6_1:4675542-4675561	Msa0870280:intron	30.0%
GAAGAATTTGATACTCAAGT+CGG	+	chr6_1:4675648-4675667	Msa0870280:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	4674132	4676181	4674132	ID=Msa0870280;Name=Msa0870280
chr6_1	mRNA	4674132	4676181	4674132	ID=Msa0870280-mRNA-1;Parent=Msa0870280;Name=Msa0870280-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|0\|0\|1\|1\|1\|2\|0\|530
chr6_1	exon	4674132	4675094	4674132	ID=Msa0870280-mRNA-1:exon:1490;Parent=Msa0870280-mRNA-1
chr6_1	exon	4675552	4676181	4675552	ID=Msa0870280-mRNA-1:exon:1491;Parent=Msa0870280-mRNA-1
chr6_1	CDS	4674132	4675094	4674132	ID=Msa0870280-mRNA-1:cds;Parent=Msa0870280-mRNA-1
chr6_1	CDS	4675552	4676181	4675552	ID=Msa0870280-mRNA-1:cds;Parent=Msa0870280-mRNA-1

Gene Sequence

>Msa0870280

ATGGATTTGGTTCTTGATTTCCTAACTAGTGCCACTTCAGTAGCACTATTTTCAATACTCTTGTTTTATTGTTTGTTTCATTATGGTTCCTACAAAGTTTCTCATAGCAAAGAGGCTCCTATAGTTCAAGGGGCATGGCCAATACTTGGTCACCTCCCACTGTTAAAATCTTCACAATCACTTTATAGAACCTTAGGTGCATTGGCTGACAAATATGGACCCTTATTCATTATCAAGCTTGGTTCCAAACGTGCTTTGGTTCTTAGCAATTGGGAAATGGCTAGGGAATGTTTCACGAAAATTGACTTGGCAATATCCATTCGCCCTAAACTTGAAGCATATAAACATATGAGTTACAATGGAGCTTTTTTTGCGTTTGCACCCAATGGTTATTATTGGCGTGAAATAAGAAAGATAGCAACTTCAGAGCTGCTCACCAATCGGCGTGTTGAACAACAACAACATTTTCATATCTCAGAAGTTCAAAGGTGGATTAAAGAGCTCTTCGATGTTTGGTTTAGTAAAAAGAATGAGTCGTCAAACTACGCGTTGGTGGAGATGAAGCAATGGTTTACTCAATTGAGTTTCAATATTGTTCTTCCGATGCTGGTTGGGAAACGATATTTTGGTGCCACGAATGTGATCAACGAGGAAGAAGGGCAAAGATGTGTAAAAGCTTTAAAAAAGTTGATGCATTTGTTAGGGGTGTTCACAATGGGAGATGCCATTCCTTTACTAAAATGGTTTGATTTTGGTGGCCATGTGAAGGCCATGAAAGCAACTTCTAAAGAATTGGACAAGATTTTAGGTGATTTGTTGGAGGAGCACCGCCATAAAAGGAGTACGGGTGAGAAGGAGGTTGATCGGGATCATCAAGACTTCATGGATTCCTTGCTTTCATTGCTTGATGGAACAACAATGGAAGGATTTGAATCTGATACCATAATCAAAGGGGCAATATTGAACTTAATCGCGGGAGGAGTTGACACAACTAGTGTTACCCTTACATGGGCAATATGTTTGTTGCTTAGAAATCCTCGAATATTGGAAAAAGCAAAAGAAGAATTTGATACTCAAGTCGGAAAAGAGAGGTGTGTAAGAGAGTCAGATATAGACAAGTTGGTCTACCTTAAAGCCATAGTCAAAGAAACTCTAAGGTTATATCCAGCTGGCCCTTTATCTATACCTCGTGAATTCTCAGAGAATTGTATTTTAGGTGGATATCATGTAAGAAAAGGAACTCGATTAATTTTGAATCTTTGGAAGATTCACACTGATCCCAATGTTTGGCCAGATCCATTGGAGTTCAAACCAGAGAGGTTTCTTACAACACATAAAGATATTGATGTTAGGGGTCAGCATTTTGAGCTATTACCATTTGGAGGTGGTAGAAGGATTTGTCCTGGGATATCATTAGGGCTTCAAATGATGCATTTAACTTTAGCTAGTTTTTTGCATTCCTTTGAAATCTTAAATCCATCAAGTGAACCTATTGATATGAATGAAACTTTTGGATTAAGCAACACCAAAACAACTCCTCTTGAGATTCTTATTAAGCCACGTTTGTATTCGAATTGCTATGAAATTATGTGA

Protein sequence

>Msa0870280

MDLVLDFLTSATSVALFSILLFYCLFHYGSYKVSHSKEAPIVQGAWPILGHLPLLKSSQSLYRTLGALADKYGPLFIIKLGSKRALVLSNWEMARECFTKIDLAISIRPKLEAYKHMSYNGAFFAFAPNGYYWREIRKIATSELLTNRRVEQQQHFHISEVQRWIKELFDVWFSKKNESSNYALVEMKQWFTQLSFNIVLPMLVGKRYFGATNVINEEEGQRCVKALKKLMHLLGVFTMGDAIPLLKWFDFGGHVKAMKATSKELDKILGDLLEEHRHKRSTGEKEVDRDHQDFMDSLLSLLDGTTMEGFESDTIIKGAILNLIAGGVDTTSVTLTWAICLLLRNPRILEKAKEEFDTQVGKERCVRESDIDKLVYLKAIVKETLRLYPAGPLSIPREFSENCILGGYHVRKGTRLILNLWKIHTDPNVWPDPLEFKPERFLTTHKDIDVRGQHFELLPFGGGRRICPGISLGLQMMHLTLASFLHSFEILNPSSEPIDMNETFGLSNTKTTPLEILIKPRLYSNCYEIM*