AlfalfaGEDB | Msa1340440

M. sativa cultivar zhongmu-4 / Msa1340440

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340440	XP_003601079.1	97.159	880	21	2	1	877	1	879	0.0	1762

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340440	sp\|O65238\|Y5537_ARATH	53.160	886	363	20	13	877	18	872	0.0	906

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340440	G7J3J6	97.159	880	21	2	1	877	1	879	0.0	1762

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa1340440	0.819091	1.392937e-52	-8.615850e-47
Msa0004180	Msa1340440	-0.804023	2.635968e-49	-8.615850e-47
Msa0006080	Msa1340440	0.818531	1.867417e-52	-8.615850e-47
Msa0010150	Msa1340440	0.829400	5.257591e-55	-8.615850e-47
Msa0011010	Msa1340440	0.812536	4.034769e-51	-8.615850e-47
Msa0011040	Msa1340440	0.809189	2.139732e-50	-8.615850e-47
Msa0011060	Msa1340440	-0.801598	8.350960e-49	-8.615850e-47
Msa0011870	Msa1340440	0.816338	5.822421e-52	-8.615850e-47
Msa0013270	Msa1340440	0.815693	8.113280e-52	-8.615850e-47
Msa0017710	Msa1340440	0.818346	2.056309e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340440	MtrunA17_Chr3g0114851	97.159	880	21	2	1	877	1	879	0.0	1762
Msa1340440	MtrunA17_Chr3g0137741	36.343	864	456	20	28	877	34	817	1.92e-163	497
Msa1340440	MtrunA17_Chr2g0318171	35.792	827	437	19	7	820	16	761	1.51e-161	491
Msa1340440	MtrunA17_Chr1g0149381	35.945	868	457	21	28	877	39	825	3.51e-155	476
Msa1340440	MtrunA17_Chr2g0314611	36.757	808	417	20	28	820	37	765	1.50e-153	470
Msa1340440	MtrunA17_Chr2g0333091	34.606	812	426	23	28	813	32	764	5.03e-136	425
Msa1340440	MtrunA17_Chr4g0023071	31.075	856	458	28	14	821	6	777	7.50e-109	353
Msa1340440	MtrunA17_Chr8g0348661	33.816	828	447	27	30	820	11	774	7.69e-109	354
Msa1340440	MtrunA17_Chr1g0202331	31.324	846	468	27	38	823	31	823	2.81e-107	350
Msa1340440	MtrunA17_Chr2g0323301	31.907	818	434	28	47	821	42	779	2.68e-104	342

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340440	AT5G35370.1	53.160	886	363	20	13	877	18	872	0.0	906
Msa1340440	AT4G32300.1	35.804	877	452	20	28	877	29	821	6.67e-160	488
Msa1340440	AT2G19130.1	33.571	843	426	33	26	821	24	779	6.97e-105	343
Msa1340440	AT1G34300.1	32.918	802	428	30	49	820	44	765	8.25e-103	338
Msa1340440	AT4G00340.1	31.148	793	456	19	47	813	33	761	4.09e-101	333
Msa1340440	AT4G00340.2	31.599	788	438	21	47	813	33	740	1.54e-100	331
Msa1340440	AT5G24080.2	30.539	835	460	28	48	823	46	819	8.00e-98	326
Msa1340440	AT5G24080.3	31.200	750	404	25	128	823	1	692	2.68e-90	302
Msa1340440	AT5G24080.1	31.200	750	404	25	128	823	1	692	2.68e-90	302
Msa1340440	AT1G65800.1	27.844	844	493	32	31	821	29	809	2.17e-81	280

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Find 165 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGTATATAGTTT+TGG	0.289749	tig0004148:-26503	Msa1340440:CDS
AAAAGCTACTAATAGTAAAT+TGG	0.295747	tig0004148:+27830	None:intergenic
AAAATTTATGATTAGTTTCA+TGG	0.245159	tig0004148:+28599	None:intergenic
AAACCGGATGTCCACCGAAT+AGG	0.428814	tig0004148:+26786	None:intergenic
AAACTCACTCCAAACATAAT+TGG	0.254000	tig0004148:+27487	None:intergenic
AAACTTGTTTGTTGATTACC+AGG	0.514565	tig0004148:+28417	None:intergenic
AAAGACTCCATCCTAGGTTG+TGG	0.558148	tig0004148:+26146	None:intergenic
AAAGATGGATTTCCTGTTAT+TGG	0.133237	tig0004148:-27277	Msa1340440:CDS
AAAGCTTTCACTCACTGAGA+TGG	0.498252	tig0004148:-28226	Msa1340440:CDS
AAAGTACGAGACCCATCGTT+CGG	0.558820	tig0004148:+27625	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGATCTGAAAATGTGTAAG+CGG	+	tig0004148:26047-26066	None:intergenic	30.0%
TCTAGACAACAAAAATGTTC+CGG	+	tig0004148:26116-26135	None:intergenic	30.0%
GTCTAGAAACAAAACATTCA+AGG	-	tig0004148:26129-26148	Msa1340440:CDS	30.0%
TTGTCCAATAACGATTGTAT+CGG	+	tig0004148:26443-26462	None:intergenic	30.0%
TCCAATTCAAATTTGTCAAC+AGG	-	tig0004148:26499-26518	Msa1340440:CDS	30.0%
TCCTGTTGACAAATTTGAAT+TGG	+	tig0004148:26503-26522	None:intergenic	30.0%
CAAGTTCATGTATATCAAGT+TGG	-	tig0004148:26685-26704	Msa1340440:CDS	30.0%
ACTAATAGTAAATTGGCCAT+CGG	+	tig0004148:26749-26768	None:intergenic	30.0%
TTCAAATTTCCATGTTGCAT+CGG	-	tig0004148:26915-26934	Msa1340440:CDS	30.0%
GTTGAAGAATTACAAGCTAA+TGG	+	tig0004148:26985-27004	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0004148	gene	25986	28619	25986	ID=Msa1340440;Name=Msa1340440
tig0004148	mRNA	25986	28619	25986	ID=Msa1340440-mRNA-1;Parent=Msa1340440;Name=Msa1340440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|877
tig0004148	exon	25986	28619	25986	ID=Msa1340440-mRNA-1:exon:2641;Parent=Msa1340440-mRNA-1
tig0004148	CDS	25986	28619	25986	ID=Msa1340440-mRNA-1:cds;Parent=Msa1340440-mRNA-1

Gene Sequence

>Msa1340440

ATGAAACTAATCATAAATTTTTCTACCGCTATTTTCCTTTTGTTTACTACTTCTATATCCGCTTACACATTTTCAGATCATATCACACCGAATTTCACTGCCTCATATCTTCAATTCATCGCTAACACCGGAACATTTTTGTTGTCTAGAAACAAAACATTCAAGGCAGCTATATTCAATCCTGGTAATCAACAAACAAGTTTCTATCTATGCATCATACATGCCGCGTCAAACACGATCATTTGGTCTGCTAACCGCGACGCACCCATCTCAGATTCCGATACAGTGAAACTAACTGTCGAAGGGATTACAATATTTGACAAAAATGGAAATTCTAAATGGTCAACACCACCACTTAAATCACAAGTGCAAAAGCTTTCACTCACTGAGATGGGAAACCTTGTGTTACTTGATCAATCCAATGGTTCTCTTTGGGAAAGTTTTCAACATCCAACCGATACAATCGTTATTGGACAACGATTATCGGTTGGAGCATCATTGTCAAGTGCTTCATCCAATTCAAATTTGTCAACAGGAAATTACAAGCTGACAATAACTTCTTCTGATGCAATACTTCAATGGCATGGACAAACATATTGGAAAATTTCAATGGATTCAAAAGCTTACAAGAATTCAAATGATGATGTTGAATACATGGCAGTAAACACAACAGGTTTTTATCTCTTTGGACATAATGAACAAGTTCATGTATATCAAGTTGGTTTATCAGTAGCCAATTTTCGTGTCGCGAAATTGGCTTCCGATGGCCAATTTACTATTAGTAGCTTTTCAGGAACAAATTTAAAGCAGGAATTTGTTGGACCAGATGATGGTTGTCAAATTCCATTAGCTTGTGGAAGAATAGGTTTATGTAATGATAATAGTTTATCATCATCATCTTCTTCTTCTTCACCTGTTTGTTCTTGTCCTTCAAATTTCCATGTTGCATCGGGTAATCTTCGTGGTTGTGTTCCGAACGATGGGTCTCGTACTTTGCCATTAGCTTGTAATTCTTCAACCAATAATAATCATAGTCAGTCAAATTCTTCAGTTGTTTCATTTTTGAATATAGGCTATGGTGTGAGGTACTTTGGAAATATTTATTCTGATCCAATTATGTTTGGAGTGAGTTTATCTGATTGTCAAGGTCATTGTTCAAGTAACTGTTCTTGTTTGGGAATTTTGTATAGAAATTCTTCAGGATCATGCTATGTAATTGAAAATGAGTTAGGATCCATTAGTAATGGAGGTGAAGGTGACATGTTAGGTTTGATTAAAGTTAATGTTAGCCATGATATTGAAAATGAACAAAATTCTCAAAAAGATGGATTTCCTGTTATTGGTGCAGTGCTAATACCAATTGGTGGGATCATTTTTTTATTGGCTCTTGTTTTTTTTCTTATGTGGAGAAAATTTACAAAGTCGAAAAAACAAGAGGTGAAATTAGGGAAACAAATCTCAATCTCACAACATTCTTCAGGGGACTTGGATCATAATGACTTTTACATTCCTGGTTTACCGACGAGGTTTGATTACGAAGAACTTGAGGTAGCTACTGATAATTTCAAGACTCTGATAGGATCTGGTGCATTCGGCGTAGTGTACAAAGGTGTACTACCTGATAAGACTATTGTGGCAGTTAAGAAAATAATCAACATTGGAATTCAAGGGAGAAAAGATTTCTTCGCCGAGATTGCTGTTATTGGAAACATTCACCATGTTAACTTAGTTAGACTCAAAGGCTTTTGTGCTCAAAGGGGACACCGAATGTTGGTGTACGAGTACATGAACCGCGGTTCACTAGATCGGAACCTATTCGGTGGACATCCGGTTTTGGAATGGCAAGAGAGGTGTGATGTTGCCCTTGGAACAGCGCGCGGACTTGCTTATCTTCACAGTGGATGTGAGCAAAAGATAATTCACTGTGATATCAAACCAGAGAATATTCTTCTGCATGATCAATTTCAAGCTAAGATATCTGATTTTGGACTTTCGAAACTCCTTAGTCCAGAACAATCTGGTTTGTTCACAACAATGAGAGGAACTCGTGGTTATCTTGCTCCGGAATGGCTTACAAATTCAGCAATTTCTGAGAAAACTGATGTATATAGTTTTGGAATGGTGCTTCTTGAATTGGTTAGTGGAAGGAAAAATTGTTCTTTCAAGTCAAGAAGTCATAGCATAGATGATGATCATAACAACAGCAGTGGTAATAATGGAAATTCATCAAACTCATCAACAACAGGACTTGTTTATTTTCCACTATATGCATTAGAAATGCATGAACAAAAGAGTTACATGGATTTGGCTGATCCAAGGTTAGAAGGACGTGTTACAATAGATGAAGTGGAGAAACTCGTTCGTATTGCATTGTGTTGTGTTCATGAAGATCCATCACTTAGGCCTAACATGGTTACAGTTGTTGGAATGTTGGAAGGTGGAACTCCATTGCCACAACCTAGGATGGAGTCTTTGAATTTCTTGAGGTTCTATGGTCGTAGGTTTTCTGAGGCTTCTGTTATAGCAGAAGAGAATGAGCATGGTTCTGTGAGGATTCAACAACCGCGTGATTCAACCCGCTTCGTTAGCGGATTTTCTTACATATCTTCACAACAAATCTCAGGACCAAGATAG

Protein sequence

>Msa1340440

MKLIINFSTAIFLLFTTSISAYTFSDHITPNFTASYLQFIANTGTFLLSRNKTFKAAIFNPGNQQTSFYLCIIHAASNTIIWSANRDAPISDSDTVKLTVEGITIFDKNGNSKWSTPPLKSQVQKLSLTEMGNLVLLDQSNGSLWESFQHPTDTIVIGQRLSVGASLSSASSNSNLSTGNYKLTITSSDAILQWHGQTYWKISMDSKAYKNSNDDVEYMAVNTTGFYLFGHNEQVHVYQVGLSVANFRVAKLASDGQFTISSFSGTNLKQEFVGPDDGCQIPLACGRIGLCNDNSLSSSSSSSSPVCSCPSNFHVASGNLRGCVPNDGSRTLPLACNSSTNNNHSQSNSSVVSFLNIGYGVRYFGNIYSDPIMFGVSLSDCQGHCSSNCSCLGILYRNSSGSCYVIENELGSISNGGEGDMLGLIKVNVSHDIENEQNSQKDGFPVIGAVLIPIGGIIFLLALVFFLMWRKFTKSKKQEVKLGKQISISQHSSGDLDHNDFYIPGLPTRFDYEELEVATDNFKTLIGSGAFGVVYKGVLPDKTIVAVKKIINIGIQGRKDFFAEIAVIGNIHHVNLVRLKGFCAQRGHRMLVYEYMNRGSLDRNLFGGHPVLEWQERCDVALGTARGLAYLHSGCEQKIIHCDIKPENILLHDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRKNCSFKSRSHSIDDDHNNSSGNNGNSSNSSTTGLVYFPLYALEMHEQKSYMDLADPRLEGRVTIDEVEKLVRIALCCVHEDPSLRPNMVTVVGMLEGGTPLPQPRMESLNFLRFYGRRFSEASVIAEENEHGSVRIQQPRDSTRFVSGFSYISSQQISGPR*