AlfalfaGEDB | Msa1362850

M. sativa cultivar zhongmu-4 / Msa1362850

KEGG: K14638
GO: -
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362850	XP_013455281.3	84.919	431	32	1	51	448	127	557	0.0	739

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362850	sp\|Q0WP01\|PTR9_ARATH	55.804	448	153	4	40	447	115	557	1.49e-166	483

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362850	A0A396I7E7	84.919	431	32	1	51	448	127	557	0.0	739

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009640	Msa1362850	0.804353	2.249952e-49	-8.615850e-47
Msa0009660	Msa1362850	0.800795	1.218739e-48	-8.615850e-47
Msa0043740	Msa1362850	0.816887	4.386228e-52	-8.615850e-47
Msa0059430	Msa1362850	0.810626	1.049642e-50	-8.615850e-47
Msa0070120	Msa1362850	0.801226	9.950845e-49	-8.615850e-47
Msa0072180	Msa1362850	0.816444	5.513351e-52	-8.615850e-47
Msa0090090	Msa1362850	0.826945	2.053459e-54	-8.615850e-47
Msa0090380	Msa1362850	0.828248	9.992767e-55	-8.615850e-47
Msa0095940	Msa1362850	0.806739	7.105927e-50	-8.615850e-47
Msa0104070	Msa1362850	0.808999	2.350509e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362850	MtrunA17_Chr4g0014801	84.919	431	32	1	51	448	127	557	0.0	739
Msa1362850	MtrunA17_Chr4g0014781	80.320	437	53	3	45	448	121	557	0.0	711
Msa1362850	MtrunA17_Chr4g0014871	76.524	443	70	4	40	448	117	559	0.0	690
Msa1362850	MtrunA17_Chr4g0014791	77.169	438	63	3	45	448	121	555	0.0	681
Msa1362850	MtrunA17_Chr4g0014791	66.000	50	7	1	1	40	1	50	3.95e-11	65.1
Msa1362850	MtrunA17_Chr4g0014841	77.598	433	62	2	49	448	125	555	0.0	681
Msa1362850	MtrunA17_Chr4g0014841	45.545	101	43	2	1	91	1	99	3.43e-11	65.1
Msa1362850	MtrunA17_Chr4g0014861	76.798	431	66	2	49	445	1	431	0.0	670
Msa1362850	MtrunA17_Chr3g0077151	59.338	423	132	7	59	446	130	547	4.39e-170	489
Msa1362850	MtrunA17_Chr8g0353031	40.393	458	208	7	40	443	105	551	3.97e-114	347

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362850	AT1G22540.1	55.804	448	153	4	40	447	115	557	1.52e-167	483
Msa1362850	AT1G72140.1	51.441	451	154	6	40	442	119	552	1.36e-150	439
Msa1362850	AT1G72125.1	52.466	446	168	9	40	443	114	557	7.04e-146	428
Msa1362850	AT1G72120.1	52.584	445	165	9	40	443	114	553	1.87e-142	419
Msa1362850	AT1G22550.1	50.000	418	165	5	63	443	150	560	1.55e-138	409
Msa1362850	AT1G72130.1	46.889	450	174	8	40	446	110	537	2.15e-130	387
Msa1362850	AT1G22570.2	49.881	421	163	7	64	443	111	524	4.46e-130	386
Msa1362850	AT1G22570.1	49.881	421	163	7	64	443	148	561	2.36e-129	385
Msa1362850	AT1G72130.2	46.991	432	165	7	57	446	10	419	1.52e-127	376
Msa1362850	AT1G72130.3	46.991	432	165	7	57	446	10	419	1.52e-127	376

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Find 105 sgRNAs with CRISPR-Local

Find 494 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTGAAATAGGATTT+TGG	0.194400	tig0017934:-64439	Msa1362850:three_prime_UTR
AAACCTTGTGTTCAAGCTTT+CGG	0.280299	tig0017934:-67013	Msa1362850:CDS
AACCTTGTGTTCAAGCTTTC+GGG	0.149446	tig0017934:-67012	Msa1362850:CDS
AACTTGTAGCCTTAGTGAGG+TGG	0.589145	tig0017934:-65388	Msa1362850:CDS
AAGAAGCAAAGGCTGTACTA+AGG	0.584489	tig0017934:-65365	Msa1362850:CDS
AAGAGTCCCTTTATTAGAAT+TGG	0.302187	tig0017934:-66752	Msa1362850:CDS
AAGCGATAAACCTGTGAAAT+AGG	0.318045	tig0017934:-64446	Msa1362850:three_prime_UTR
AAGGCATTGCTAACACCAAT+TGG	0.443061	tig0017934:-65426	Msa1362850:CDS
AATAAGATAACTTGTGACTG+AGG	0.612333	tig0017934:+67079	None:intergenic
AATCCTTGGCTATCCTTATG+TGG	0.520497	tig0017934:+64627	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATAGTCAAACCAAAACTAA+AGG	+	tig0017934:64681-64700	None:intergenic	30.0%
GTAAAAAGTTTAGCTAGGTA+GGG	+	tig0017934:64718-64737	None:intergenic	30.0%
AGTAAAAAGTTTAGCTAGGT+AGG	+	tig0017934:64719-64738	None:intergenic	30.0%
AAGTAATGTTGGTCATTATG+TGG	+	tig0017934:65542-65561	None:intergenic	30.0%
TAAGTGGAATGAAGTAATGT+TGG	+	tig0017934:65553-65572	None:intergenic	30.0%
CTACCAAAATCAACATATCT+AGG	-	tig0017934:65708-65727	Msa1362850:intron	30.0%
AAAGAAATTGAACTCGAAGA+GGG	+	tig0017934:65742-65761	None:intergenic	30.0%
AAAAGAAATTGAACTCGAAG+AGG	+	tig0017934:65743-65762	None:intergenic	30.0%
GTGCTCTTGAAAGTTAAATT+TGG	+	tig0017934:66445-66464	None:intergenic	30.0%
TTTGGGGAAATATAAGTTAG+AGG	+	tig0017934:66601-66620	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0017934	gene	64388	74057	64388	ID=Msa1362850;Name=Msa1362850
tig0017934	mRNA	64388	74057	64388	ID=Msa1362850-mRNA-1;Parent=Msa1362850;Name=Msa1362850-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.2\|0.16\|1\|0.4\|0.33\|6\|254\|448
tig0017934	exon	64388	65458	64388	ID=Msa1362850-mRNA-1:exon:13265;Parent=Msa1362850-mRNA-1
tig0017934	exon	66644	66796	66644	ID=Msa1362850-mRNA-1:exon:13264;Parent=Msa1362850-mRNA-1
tig0017934	exon	66847	66877	66847	ID=Msa1362850-mRNA-1:exon:13263;Parent=Msa1362850-mRNA-1
tig0017934	exon	66927	67155	66927	ID=Msa1362850-mRNA-1:exon:13262;Parent=Msa1362850-mRNA-1
tig0017934	exon	73544	73563	73544	ID=Msa1362850-mRNA-1:exon:13261;Parent=Msa1362850-mRNA-1
tig0017934	exon	73961	74057	73961	ID=Msa1362850-mRNA-1:exon:13260;Parent=Msa1362850-mRNA-1
tig0017934	CDS	73961	74057	73961	ID=Msa1362850-mRNA-1:cds;Parent=Msa1362850-mRNA-1
tig0017934	CDS	73544	73563	73544	ID=Msa1362850-mRNA-1:cds;Parent=Msa1362850-mRNA-1
tig0017934	CDS	66927	67155	66927	ID=Msa1362850-mRNA-1:cds;Parent=Msa1362850-mRNA-1
tig0017934	CDS	66847	66877	66847	ID=Msa1362850-mRNA-1:cds;Parent=Msa1362850-mRNA-1
tig0017934	CDS	66644	66796	66644	ID=Msa1362850-mRNA-1:cds;Parent=Msa1362850-mRNA-1
tig0017934	CDS	64642	65458	64642	ID=Msa1362850-mRNA-1:cds;Parent=Msa1362850-mRNA-1
tig0017934	three_prime_UTR	64388	64641	64388	ID=Msa1362850-mRNA-1:three_prime_utr;Parent=Msa1362850-mRNA-1

Gene Sequence

>Msa1362850

ATGGCAGAATCCAACGAAGTGCTGTTAGAAGCTCAATTAGCTATTGTTGATGGCGCGGTTGATTACAAAGGACAGCCCGCAGTTAGGTCCGAATCTGGCGTGGAAGTGGCGGAGAGGGGACTAGGCTTGTTAACACTATCAGCTTTGCTCCCTTCCCTTACATATTGTTCTCCTCAGTCACAAGTTATCTTATTCTTCGTCTCACTCTATCTAGTTGCCATTGGACAAGGTGGGCATAAACCTTGTGTTCAAGCTTTCGGGGCGGATCAATTCGATGAAAAACATCCTAAAGAGCACACAGCTAGAAGCTCATTCTTTAATTGGTGGTATTTTACTATGATTGCAGTTGGGTTCTTGGATTTGGAATCCCTTGTGTCGTTTAATATTAAGGATAATGACAAGAGTCCCTTTATTAGAATTGGTCGTGTATTTGTCGCAGCTATAAGAAATTGGCGAAATAGCTTATCAACAACGGATTTGGAAGAAGAATGTGAAGGACTACTTCGCTGTCAAAGTTCTGAACAATTCAACTTCCTCAACAAGGCATTGCTAACACCAATTGGACCCAAAGAAGATGAAACTTGTAGCCTTAGTGAGGTGGAAGAAGCAAAGGCTGTACTAAGGTTGGTTCCAATTTGGGCTTCAACTTTGGTTTATGGTATTGTCTTTGCTCAAGTTTTTACATTCTTCACCAAGCAAGGGACTTCAATGGAGAGAACAATATTTCCTGGATTTGACATACCTCCCTCTTCGCTTCAAACGATAAAATGGCTTGCAATTGTTCTCTTCTGCCCTATCTATGAGCACATATTCGTGCCACTAGCAAGAGTTATCACCGGAAAACCCTCAGGCATCACAATGCTTCAACGAATTGGCACTGGAATTTTTATATCAATATTCATGGTAGTATTTGCAGCCTTTGTTGAGATGAAAAGACTAAAAATAGCACAAGAGCATGGTCTTGTTGATGATCCAAATGCAACTGTTCCAATGAGTATATGGTGGTTGGTTCCTCAATACTTTTTGTTTGGAGTTTCTGAGGTTTTTACTATGGTTGGTCTTCAGGAATTTTTCTATGATCAAGTCCCAAATGAACTAAGAAGCATGGGACTTGCACTCTATTTGAGTATTGTTGGTGTTGGAAGCTTTCTAAGTGGCTTTCTCATTTCTTTGATAGAATATTTTAGCGGCAAAGATGATCGTGAAAGTTGGTTTTGTGACAATATCAATAAAGCACATTTTGATTACTTTTATTGGTTTCTTGCTGGATTAAGTGTGGTGGGATTTACTTTGTTCATTTACTTTGCAAAATCATACATTTATAATCGCAAAGGCACTACCACATAA

Protein sequence

>Msa1362850

MAESNEVLLEAQLAIVDGAVDYKGQPAVRSESGVEVAERGLGLLTLSALLPSLTYCSPQSQVILFFVSLYLVAIGQGGHKPCVQAFGADQFDEKHPKEHTARSSFFNWWYFTMIAVGFLDLESLVSFNIKDNDKSPFIRIGRVFVAAIRNWRNSLSTTDLEEECEGLLRCQSSEQFNFLNKALLTPIGPKEDETCSLSEVEEAKAVLRLVPIWASTLVYGIVFAQVFTFFTKQGTSMERTIFPGFDIPPSSLQTIKWLAIVLFCPIYEHIFVPLARVITGKPSGITMLQRIGTGIFISIFMVVFAAFVEMKRLKIAQEHGLVDDPNATVPMSIWWLVPQYFLFGVSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIVGVGSFLSGFLISLIEYFSGKDDRESWFCDNINKAHFDYFYWFLAGLSVVGFTLFIYFAKSYIYNRKGTTT*