Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885880 | XP_027188042.1 | 64.242 | 165 | 55 | 2 | 83 | 247 | 10 | 170 | 5.11e-67 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885880 | A0A3Q7Y8M1 | 64.242 | 165 | 55 | 2 | 83 | 247 | 10 | 170 | 2.44e-67 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026150 | Msa0885880 | 0.807097 | 5.970736e-50 | -8.615850e-47 |
| Msa0047280 | Msa0885880 | 0.814234 | 1.709286e-51 | -8.615850e-47 |
| Msa0677770 | Msa0885880 | 0.886275 | 3.940120e-72 | -8.615850e-47 |
| Msa0699570 | Msa0885880 | 0.802397 | 5.719067e-49 | -8.615850e-47 |
| Msa0784380 | Msa0885880 | 0.802663 | 5.040840e-49 | -8.615850e-47 |
| Msa0784860 | Msa0885880 | 0.809035 | 2.308082e-50 | -8.615850e-47 |
| Msa0791820 | Msa0885880 | 0.801997 | 6.914018e-49 | -8.615850e-47 |
| Msa0821680 | Msa0885880 | 0.801549 | 8.542909e-49 | -8.615850e-47 |
| Msa0245310 | Msa0885880 | 0.809522 | 1.815640e-50 | -8.615850e-47 |
| Msa0870150 | Msa0885880 | 0.805216 | 1.485834e-49 | -8.615850e-47 |
| Msa0885880 | Msa0970420 | 0.808978 | 2.374142e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885880 | MtrunA17_Chr8g0345501 | 55.801 | 181 | 61 | 4 | 81 | 261 | 553 | 714 | 5.61e-54 | 187 |
| Msa0885880 | MtrunA17_Chr2g0313001 | 71.000 | 100 | 7 | 2 | 216 | 315 | 54 | 131 | 2.32e-37 | 130 |
| Msa0885880 | MtrunA17_Chr8g0345511 | 55.102 | 98 | 37 | 2 | 118 | 215 | 16 | 106 | 6.64e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAACTGATTTGGATATA+TGG | 0.220847 | 6_1:+43335749 | Msa0885880:CDS |
| CTTGTTCTTGTTTGTCGTTT+TGG | 0.236732 | 6_1:-43335324 | None:intergenic |
| AATAAACACTGAACTATTAT+TGG | 0.259291 | 6_1:-43335056 | None:intergenic |
| TGCTGCCATTATGAAACATT+TGG | 0.286335 | 6_1:+43336011 | Msa0885880:CDS |
| ATATGAAATGCCAACTGATT+TGG | 0.299266 | 6_1:+43335741 | Msa0885880:CDS |
| TGCTCATTTGATTCACTGTT+GGG | 0.320236 | 6_1:-43336066 | None:intergenic |
| CTTCCGTACACATCGCAAAA+AGG | 0.331253 | 6_1:+43335405 | Msa0885880:CDS |
| ATTATGAAACATTTGGGATT+TGG | 0.374329 | 6_1:+43336018 | Msa0885880:CDS |
| GCTGCCATTATGAAACATTT+GGG | 0.392254 | 6_1:+43336012 | Msa0885880:CDS |
| CACTGTTGGGGTTTGAAACA+TGG | 0.393708 | 6_1:-43336053 | None:intergenic |
| AGAGTTTACTTTGCCTATGA+TGG | 0.402552 | 6_1:+43334998 | Msa0885880:CDS |
| GCCAACTGATTTGGATATAT+GGG | 0.422049 | 6_1:+43335750 | Msa0885880:CDS |
| AAATCCCAAATGTTTCATAA+TGG | 0.426801 | 6_1:-43336016 | None:intergenic |
| CAGAATACCACATTTGATCT+AGG | 0.443295 | 6_1:+43335691 | Msa0885880:CDS |
| ATAATGGAAGAAGATGAAAA+TGG | 0.450685 | 6_1:+43334954 | None:intergenic |
| TTGATTTGAAGATGGAATCA+AGG | 0.453518 | 6_1:-43335830 | None:intergenic |
| ATGAAACATTTGGGATTTGG+TGG | 0.462011 | 6_1:+43336021 | Msa0885880:CDS |
| AAAGGGAGGATATTTGGTCT+TGG | 0.464262 | 6_1:+43335793 | Msa0885880:CDS |
| GTGCTCATTTGATTCACTGT+TGG | 0.469093 | 6_1:-43336067 | None:intergenic |
| TCAGTTGGCATTTCATATGT+TGG | 0.473157 | 6_1:-43335736 | None:intergenic |
| TTTGTTTGTTGATTTGAAGA+TGG | 0.485071 | 6_1:-43335838 | None:intergenic |
| AACAAGAGAAGTTGCAGATG+AGG | 0.489038 | 6_1:+43335938 | Msa0885880:CDS |
| GAGTTTACTTTGCCTATGAT+GGG | 0.490259 | 6_1:+43334999 | Msa0885880:CDS |
| GATATATGGGTAGATTCTGT+TGG | 0.506068 | 6_1:+43335763 | Msa0885880:CDS |
| CAACATCTTCAGCAAAATCA+TGG | 0.507886 | 6_1:-43336140 | None:intergenic |
| CAACATCTTCAGCAAAATCA+TGG | 0.508374 | 6_1:-43336194 | None:intergenic |
| TGCTGAAGATGTTGATGAAG+AGG | 0.530294 | 6_1:+43336149 | Msa0885880:CDS |
| AAATGAGCACATTGATGAAG+AGG | 0.534323 | 6_1:+43336080 | Msa0885880:CDS |
| TGAAAATGGTGAAGATCAAG+AGG | 0.563687 | 6_1:+43334968 | Msa0885880:CDS |
| ACCCATATATCCAAATCAGT+TGG | 0.567496 | 6_1:-43335751 | None:intergenic |
| ACTGTTGGGGTTTGAAACAT+GGG | 0.581536 | 6_1:-43336052 | None:intergenic |
| GGAGATGATGAAAATGATGG+TGG | 0.582270 | 6_1:+43335020 | Msa0885880:CDS |
| ATGGGAGATGATGAAAATGA+TGG | 0.585573 | 6_1:+43335017 | Msa0885880:CDS |
| GCTCATTTGATTCACTGTTG+GGG | 0.595706 | 6_1:-43336065 | None:intergenic |
| TACACATGCTAATTCAGAAG+AGG | 0.601418 | 6_1:+43335861 | Msa0885880:CDS |
| TGATGAAAATGATGGTGGAG+AGG | 0.630883 | 6_1:+43335025 | Msa0885880:CDS |
| ATCCTCTCCTAGATCAAATG+TGG | 0.631465 | 6_1:-43335698 | None:intergenic |
| CAAGAACAAGAACAAGAACA+AGG | 0.636870 | 6_1:+43335355 | Msa0885880:CDS |
| AGATGAGGCAACAAATGCAA+CGG | 0.644760 | 6_1:+43335953 | Msa0885880:CDS |
| TACCACATTTGATCTAGGAG+AGG | 0.654129 | 6_1:+43335696 | Msa0885880:CDS |
| AAAGAACAAGAACAAGAACA+AGG | 0.675808 | 6_1:+43335292 | Msa0885880:CDS |
| AACTTGATAACATCCAACAA+TGG | 0.681968 | 6_1:+43335259 | Msa0885880:CDS |
| AAGTAAAACTCAGTCAACGA+CGG | 0.749212 | 6_1:-43335385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTATTTTTTATGCAT+TGG | + | chr6_1:43335611-43335630 | Msa0885880:intron | 15.0% |
| !!! | AGTTTTTATTTTTTATGCAT+TGG | + | chr6_1:43335611-43335630 | Msa0885880:intron | 15.0% |
| !! | AATAAACACTGAACTATTAT+TGG | - | chr6_1:43335059-43335078 | None:intergenic | 20.0% |
| !! | ATGAAAAGTAATCACAAAAA+AGG | - | chr6_1:43335116-43335135 | None:intergenic | 20.0% |
| !!! | GACTTCTTTTATTTTCTTTT+AGG | + | chr6_1:43335633-43335652 | Msa0885880:intron | 20.0% |
| !! | CAAATTTGAACAAAAAAAGA+TGG | + | chr6_1:43335657-43335676 | Msa0885880:CDS | 20.0% |
| !! | AATAAACACTGAACTATTAT+TGG | - | chr6_1:43335059-43335078 | None:intergenic | 20.0% |
| !! | ATGAAAAGTAATCACAAAAA+AGG | - | chr6_1:43335116-43335135 | None:intergenic | 20.0% |
| !!! | GACTTCTTTTATTTTCTTTT+AGG | + | chr6_1:43335633-43335652 | Msa0885880:intron | 20.0% |
| !! | CAAATTTGAACAAAAAAAGA+TGG | + | chr6_1:43335657-43335676 | Msa0885880:CDS | 20.0% |
| ! | TGTAAACTGAAAAAAAACAG+AGG | - | chr6_1:43335087-43335106 | None:intergenic | 25.0% |
| !! | ATTTGAATTTGAAGCATACA+AGG | - | chr6_1:43335142-43335161 | None:intergenic | 25.0% |
| !! | TTCTTGTTCTTGTTCTTTTT+GGG | - | chr6_1:43335290-43335309 | None:intergenic | 25.0% |
| ! | AGAAGAAACAAAAAAGAATG+TGG | - | chr6_1:43335572-43335591 | None:intergenic | 25.0% |
| !! | ATTCTGTTGGTAGAAAAAAA+GGG | + | chr6_1:43335776-43335795 | Msa0885880:CDS | 25.0% |
| !!! | TTTGTTTGTTGATTTGAAGA+TGG | - | chr6_1:43335841-43335860 | None:intergenic | 25.0% |
| ! | AAATCCCAAATGTTTCATAA+TGG | - | chr6_1:43336019-43336038 | None:intergenic | 25.0% |
| !! | ATTATGAAACATTTGGGATT+TGG | + | chr6_1:43336018-43336037 | Msa0885880:CDS | 25.0% |
| ! | TGTAAACTGAAAAAAAACAG+AGG | - | chr6_1:43335087-43335106 | None:intergenic | 25.0% |
| !! | ATTTGAATTTGAAGCATACA+AGG | - | chr6_1:43335142-43335161 | None:intergenic | 25.0% |
| !! | TTCTTGTTCTTGTTCTTTTT+GGG | - | chr6_1:43335290-43335309 | None:intergenic | 25.0% |
| ! | AGAAGAAACAAAAAAGAATG+TGG | - | chr6_1:43335572-43335591 | None:intergenic | 25.0% |
| !! | ATTCTGTTGGTAGAAAAAAA+GGG | + | chr6_1:43335776-43335795 | Msa0885880:CDS | 25.0% |
| !!! | TTTGTTTGTTGATTTGAAGA+TGG | - | chr6_1:43335841-43335860 | None:intergenic | 25.0% |
| ! | AAATCCCAAATGTTTCATAA+TGG | - | chr6_1:43336019-43336038 | None:intergenic | 25.0% |
| !! | ATTATGAAACATTTGGGATT+TGG | + | chr6_1:43336018-43336037 | Msa0885880:CDS | 25.0% |
| !!! | TCTTGTTTTGCATTCTTTTC+AGG | + | chr6_1:43335214-43335233 | Msa0885880:intron | 30.0% |
| ! | AACTTGATAACATCCAACAA+TGG | + | chr6_1:43335259-43335278 | Msa0885880:CDS | 30.0% |
| ! | GTTCTTGTTCTTGTTCTTTT+TGG | - | chr6_1:43335291-43335310 | None:intergenic | 30.0% |
| AAAGAACAAGAACAAGAACA+AGG | + | chr6_1:43335292-43335311 | Msa0885880:CDS | 30.0% | |
| !!! | TTGTTCTTGTTTGTCGTTTT+GGG | - | chr6_1:43335326-43335345 | None:intergenic | 30.0% |
| ATATGAAATGCCAACTGATT+TGG | + | chr6_1:43335741-43335760 | Msa0885880:CDS | 30.0% | |
| ! | GATTCTGTTGGTAGAAAAAA+AGG | + | chr6_1:43335775-43335794 | Msa0885880:CDS | 30.0% |
| AGAAAAAAAGGGAGGATATT+TGG | + | chr6_1:43335787-43335806 | Msa0885880:CDS | 30.0% | |
| ! | TTGATTTGAAGATGGAATCA+AGG | - | chr6_1:43335833-43335852 | None:intergenic | 30.0% |
| !!! | TCTTGTTTTGCATTCTTTTC+AGG | + | chr6_1:43335214-43335233 | Msa0885880:intron | 30.0% |
| ! | AACTTGATAACATCCAACAA+TGG | + | chr6_1:43335259-43335278 | Msa0885880:CDS | 30.0% |
| ! | GTTCTTGTTCTTGTTCTTTT+TGG | - | chr6_1:43335291-43335310 | None:intergenic | 30.0% |
| AAAGAACAAGAACAAGAACA+AGG | + | chr6_1:43335292-43335311 | Msa0885880:CDS | 30.0% | |
| !!! | TTGTTCTTGTTTGTCGTTTT+GGG | - | chr6_1:43335326-43335345 | None:intergenic | 30.0% |
| ATATGAAATGCCAACTGATT+TGG | + | chr6_1:43335741-43335760 | Msa0885880:CDS | 30.0% | |
| ! | GATTCTGTTGGTAGAAAAAA+AGG | + | chr6_1:43335775-43335794 | Msa0885880:CDS | 30.0% |
| AGAAAAAAAGGGAGGATATT+TGG | + | chr6_1:43335787-43335806 | Msa0885880:CDS | 30.0% | |
| ! | TTGATTTGAAGATGGAATCA+AGG | - | chr6_1:43335833-43335852 | None:intergenic | 30.0% |
| TGAAAATGGTGAAGATCAAG+AGG | + | chr6_1:43334968-43334987 | Msa0885880:CDS | 35.0% | |
| AGAGTTTACTTTGCCTATGA+TGG | + | chr6_1:43334998-43335017 | Msa0885880:CDS | 35.0% | |
| GAGTTTACTTTGCCTATGAT+GGG | + | chr6_1:43334999-43335018 | Msa0885880:CDS | 35.0% | |
| ! | TTTTCATCATCTCCCATCAT+AGG | - | chr6_1:43335014-43335033 | None:intergenic | 35.0% |
| ATGGGAGATGATGAAAATGA+TGG | + | chr6_1:43335017-43335036 | Msa0885880:CDS | 35.0% | |
| !! | TTGTTCTTGTTCTTTTTGGG+TGG | - | chr6_1:43335287-43335306 | None:intergenic | 35.0% |
| !! | CTTGTTCTTGTTTGTCGTTT+TGG | - | chr6_1:43335327-43335346 | None:intergenic | 35.0% |
| CAAGAACAAGAACAAGAACA+AGG | + | chr6_1:43335337-43335356 | Msa0885880:CDS | 35.0% | |
| AAGTAAAACTCAGTCAACGA+CGG | - | chr6_1:43335388-43335407 | None:intergenic | 35.0% | |
| ATCGCAAAAAGGATCAAAGT+TGG | + | chr6_1:43335416-43335435 | Msa0885880:CDS | 35.0% | |
| TCGCAAAAAGGATCAAAGTT+GGG | + | chr6_1:43335417-43335436 | Msa0885880:CDS | 35.0% | |
| AAAAAGGATCAAAGTTGGGT+GGG | + | chr6_1:43335421-43335440 | Msa0885880:CDS | 35.0% | |
| CACATGAGTGCAAACATATA+TGG | - | chr6_1:43335496-43335515 | None:intergenic | 35.0% | |
| TATATGTTTGCACTCATGTG+TGG | + | chr6_1:43335496-43335515 | Msa0885880:intron | 35.0% | |
| CAGAATACCACATTTGATCT+AGG | + | chr6_1:43335691-43335710 | Msa0885880:CDS | 35.0% | |
| TCAGTTGGCATTTCATATGT+TGG | - | chr6_1:43335739-43335758 | None:intergenic | 35.0% | |
| !! | TGCCAACTGATTTGGATATA+TGG | + | chr6_1:43335749-43335768 | Msa0885880:CDS | 35.0% |
| !! | GCCAACTGATTTGGATATAT+GGG | + | chr6_1:43335750-43335769 | Msa0885880:CDS | 35.0% |
| ACCCATATATCCAAATCAGT+TGG | - | chr6_1:43335754-43335773 | None:intergenic | 35.0% | |
| GATATATGGGTAGATTCTGT+TGG | + | chr6_1:43335763-43335782 | Msa0885880:CDS | 35.0% | |
| TACACATGCTAATTCAGAAG+AGG | + | chr6_1:43335861-43335880 | Msa0885880:CDS | 35.0% | |
| TGCTGCCATTATGAAACATT+TGG | + | chr6_1:43336011-43336030 | Msa0885880:CDS | 35.0% | |
| GCTGCCATTATGAAACATTT+GGG | + | chr6_1:43336012-43336031 | Msa0885880:CDS | 35.0% | |
| ! | ATGAAACATTTGGGATTTGG+TGG | + | chr6_1:43336021-43336040 | Msa0885880:CDS | 35.0% |
| TGCTCATTTGATTCACTGTT+GGG | - | chr6_1:43336069-43336088 | None:intergenic | 35.0% | |
| AAATGAGCACATTGATGAAG+AGG | + | chr6_1:43336080-43336099 | Msa0885880:CDS | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | - | chr6_1:43336110-43336129 | None:intergenic | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | - | chr6_1:43336110-43336129 | None:intergenic | 35.0% | |
| TGAAAATGGTGAAGATCAAG+AGG | + | chr6_1:43334968-43334987 | Msa0885880:CDS | 35.0% | |
| AGAGTTTACTTTGCCTATGA+TGG | + | chr6_1:43334998-43335017 | Msa0885880:CDS | 35.0% | |
| GAGTTTACTTTGCCTATGAT+GGG | + | chr6_1:43334999-43335018 | Msa0885880:CDS | 35.0% | |
| ! | TTTTCATCATCTCCCATCAT+AGG | - | chr6_1:43335014-43335033 | None:intergenic | 35.0% |
| ATGGGAGATGATGAAAATGA+TGG | + | chr6_1:43335017-43335036 | Msa0885880:CDS | 35.0% | |
| !! | TTGTTCTTGTTCTTTTTGGG+TGG | - | chr6_1:43335287-43335306 | None:intergenic | 35.0% |
| !! | CTTGTTCTTGTTTGTCGTTT+TGG | - | chr6_1:43335327-43335346 | None:intergenic | 35.0% |
| CAAGAACAAGAACAAGAACA+AGG | + | chr6_1:43335337-43335356 | Msa0885880:CDS | 35.0% | |
| AAGTAAAACTCAGTCAACGA+CGG | - | chr6_1:43335388-43335407 | None:intergenic | 35.0% | |
| ATCGCAAAAAGGATCAAAGT+TGG | + | chr6_1:43335416-43335435 | Msa0885880:CDS | 35.0% | |
| TCGCAAAAAGGATCAAAGTT+GGG | + | chr6_1:43335417-43335436 | Msa0885880:CDS | 35.0% | |
| AAAAAGGATCAAAGTTGGGT+GGG | + | chr6_1:43335421-43335440 | Msa0885880:CDS | 35.0% | |
| CACATGAGTGCAAACATATA+TGG | - | chr6_1:43335496-43335515 | None:intergenic | 35.0% | |
| TATATGTTTGCACTCATGTG+TGG | + | chr6_1:43335496-43335515 | Msa0885880:intron | 35.0% | |
| CAGAATACCACATTTGATCT+AGG | + | chr6_1:43335691-43335710 | Msa0885880:CDS | 35.0% | |
| TCAGTTGGCATTTCATATGT+TGG | - | chr6_1:43335739-43335758 | None:intergenic | 35.0% | |
| !! | TGCCAACTGATTTGGATATA+TGG | + | chr6_1:43335749-43335768 | Msa0885880:CDS | 35.0% |
| !! | GCCAACTGATTTGGATATAT+GGG | + | chr6_1:43335750-43335769 | Msa0885880:CDS | 35.0% |
| ACCCATATATCCAAATCAGT+TGG | - | chr6_1:43335754-43335773 | None:intergenic | 35.0% | |
| GATATATGGGTAGATTCTGT+TGG | + | chr6_1:43335763-43335782 | Msa0885880:CDS | 35.0% | |
| TACACATGCTAATTCAGAAG+AGG | + | chr6_1:43335861-43335880 | Msa0885880:CDS | 35.0% | |
| TGCTGCCATTATGAAACATT+TGG | + | chr6_1:43336011-43336030 | Msa0885880:CDS | 35.0% | |
| GCTGCCATTATGAAACATTT+GGG | + | chr6_1:43336012-43336031 | Msa0885880:CDS | 35.0% | |
| ! | ATGAAACATTTGGGATTTGG+TGG | + | chr6_1:43336021-43336040 | Msa0885880:CDS | 35.0% |
| TGCTCATTTGATTCACTGTT+GGG | - | chr6_1:43336069-43336088 | None:intergenic | 35.0% | |
| AAATGAGCACATTGATGAAG+AGG | + | chr6_1:43336080-43336099 | Msa0885880:CDS | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | - | chr6_1:43336110-43336129 | None:intergenic | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | - | chr6_1:43336110-43336129 | None:intergenic | 35.0% | |
| GGAGATGATGAAAATGATGG+TGG | + | chr6_1:43335020-43335039 | Msa0885880:CDS | 40.0% | |
| !! | TGATGAAAATGATGGTGGAG+AGG | + | chr6_1:43335025-43335044 | Msa0885880:CDS | 40.0% |
| ! | GATCCTTTTTGCGATGTGTA+CGG | - | chr6_1:43335411-43335430 | None:intergenic | 40.0% |
| CAAAAAGGATCAAAGTTGGG+TGG | + | chr6_1:43335420-43335439 | Msa0885880:CDS | 40.0% | |
| TACCACATTTGATCTAGGAG+AGG | + | chr6_1:43335696-43335715 | Msa0885880:CDS | 40.0% | |
| ATCCTCTCCTAGATCAAATG+TGG | - | chr6_1:43335701-43335720 | None:intergenic | 40.0% | |
| ! | CTGTTGGTAGAAAAAAAGGG+AGG | + | chr6_1:43335779-43335798 | Msa0885880:CDS | 40.0% |
| AAAGGGAGGATATTTGGTCT+TGG | + | chr6_1:43335793-43335812 | Msa0885880:CDS | 40.0% | |
| AACAAGAGAAGTTGCAGATG+AGG | + | chr6_1:43335938-43335957 | Msa0885880:CDS | 40.0% | |
| AGATGAGGCAACAAATGCAA+CGG | + | chr6_1:43335953-43335972 | Msa0885880:CDS | 40.0% | |
| ! | ACTGTTGGGGTTTGAAACAT+GGG | - | chr6_1:43336055-43336074 | None:intergenic | 40.0% |
| GCTCATTTGATTCACTGTTG+GGG | - | chr6_1:43336068-43336087 | None:intergenic | 40.0% | |
| GTGCTCATTTGATTCACTGT+TGG | - | chr6_1:43336070-43336089 | None:intergenic | 40.0% | |
| ! | TGCTGAAGATGTTGATGAAG+AGG | + | chr6_1:43336116-43336135 | Msa0885880:CDS | 40.0% |
| GGAGATGATGAAAATGATGG+TGG | + | chr6_1:43335020-43335039 | Msa0885880:CDS | 40.0% | |
| !! | TGATGAAAATGATGGTGGAG+AGG | + | chr6_1:43335025-43335044 | Msa0885880:CDS | 40.0% |
| ! | GATCCTTTTTGCGATGTGTA+CGG | - | chr6_1:43335411-43335430 | None:intergenic | 40.0% |
| CAAAAAGGATCAAAGTTGGG+TGG | + | chr6_1:43335420-43335439 | Msa0885880:CDS | 40.0% | |
| TACCACATTTGATCTAGGAG+AGG | + | chr6_1:43335696-43335715 | Msa0885880:CDS | 40.0% | |
| ATCCTCTCCTAGATCAAATG+TGG | - | chr6_1:43335701-43335720 | None:intergenic | 40.0% | |
| ! | CTGTTGGTAGAAAAAAAGGG+AGG | + | chr6_1:43335779-43335798 | Msa0885880:CDS | 40.0% |
| AAAGGGAGGATATTTGGTCT+TGG | + | chr6_1:43335793-43335812 | Msa0885880:CDS | 40.0% | |
| AACAAGAGAAGTTGCAGATG+AGG | + | chr6_1:43335938-43335957 | Msa0885880:CDS | 40.0% | |
| AGATGAGGCAACAAATGCAA+CGG | + | chr6_1:43335953-43335972 | Msa0885880:CDS | 40.0% | |
| ! | ACTGTTGGGGTTTGAAACAT+GGG | - | chr6_1:43336055-43336074 | None:intergenic | 40.0% |
| GCTCATTTGATTCACTGTTG+GGG | - | chr6_1:43336068-43336087 | None:intergenic | 40.0% | |
| GTGCTCATTTGATTCACTGT+TGG | - | chr6_1:43336070-43336089 | None:intergenic | 40.0% | |
| ! | TGCTGAAGATGTTGATGAAG+AGG | + | chr6_1:43336116-43336135 | Msa0885880:CDS | 40.0% |
| !!! | TTTTTGGGTGGCTCCATTGT+TGG | - | chr6_1:43335275-43335294 | None:intergenic | 45.0% |
| CTTCCGTACACATCGCAAAA+AGG | + | chr6_1:43335405-43335424 | Msa0885880:CDS | 45.0% | |
| GTGTGGCTCAAAGGAAGATT+TGG | + | chr6_1:43335513-43335532 | Msa0885880:intron | 45.0% | |
| ! | CACTGTTGGGGTTTGAAACA+TGG | - | chr6_1:43336056-43336075 | None:intergenic | 45.0% |
| !!! | TTTTTGGGTGGCTCCATTGT+TGG | - | chr6_1:43335275-43335294 | None:intergenic | 45.0% |
| CTTCCGTACACATCGCAAAA+AGG | + | chr6_1:43335405-43335424 | Msa0885880:CDS | 45.0% | |
| GTGTGGCTCAAAGGAAGATT+TGG | + | chr6_1:43335513-43335532 | Msa0885880:intron | 45.0% | |
| ! | CACTGTTGGGGTTTGAAACA+TGG | - | chr6_1:43336056-43336075 | None:intergenic | 45.0% |
| TGCACTCATGTGTGGCTCAA+AGG | + | chr6_1:43335504-43335523 | Msa0885880:intron | 50.0% | |
| TGCACTCATGTGTGGCTCAA+AGG | + | chr6_1:43335504-43335523 | Msa0885880:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 43334957 | 43336251 | 43334957 | ID=Msa0885880;Name=Msa0885880 |
| chr6_1 | mRNA | 43334957 | 43336251 | 43334957 | ID=Msa0885880-mRNA-1;Parent=Msa0885880;Name=Msa0885880-mRNA-1;_AED=0.29;_eAED=0.28;_QI=0|0.33|0|0.5|1|1|4|0|315 |
| chr6_1 | exon | 43334957 | 43335071 | 43334957 | ID=Msa0885880-mRNA-1:exon:9403;Parent=Msa0885880-mRNA-1 |
| chr6_1 | exon | 43335101 | 43335106 | 43335101 | ID=Msa0885880-mRNA-1:exon:9404;Parent=Msa0885880-mRNA-1 |
| chr6_1 | exon | 43335236 | 43335465 | 43335236 | ID=Msa0885880-mRNA-1:exon:9405;Parent=Msa0885880-mRNA-1 |
| chr6_1 | exon | 43335655 | 43336251 | 43335655 | ID=Msa0885880-mRNA-1:exon:9406;Parent=Msa0885880-mRNA-1 |
| chr6_1 | CDS | 43334957 | 43335071 | 43334957 | ID=Msa0885880-mRNA-1:cds;Parent=Msa0885880-mRNA-1 |
| chr6_1 | CDS | 43335101 | 43335106 | 43335101 | ID=Msa0885880-mRNA-1:cds;Parent=Msa0885880-mRNA-1 |
| chr6_1 | CDS | 43335236 | 43335465 | 43335236 | ID=Msa0885880-mRNA-1:cds;Parent=Msa0885880-mRNA-1 |
| chr6_1 | CDS | 43335655 | 43336251 | 43335655 | ID=Msa0885880-mRNA-1:cds;Parent=Msa0885880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
