Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821680 | XP_003617309.2 | 93.314 | 688 | 17 | 1 | 6 | 664 | 2 | 689 | 0.0 | 1296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821680 | G7KCZ3 | 93.314 | 688 | 17 | 1 | 6 | 664 | 2 | 689 | 0.0 | 1296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047280 | Msa0821680 | 0.818650 | 1.754849e-52 | -8.615850e-47 |
| Msa0055100 | Msa0821680 | 0.803007 | 4.280305e-49 | -8.615850e-47 |
| Msa0065010 | Msa0821680 | 0.814131 | 1.800705e-51 | -8.615850e-47 |
| Msa0070960 | Msa0821680 | 0.818075 | 2.368118e-52 | -8.615850e-47 |
| Msa0100800 | Msa0821680 | 0.811548 | 6.624976e-51 | -8.615850e-47 |
| Msa0101180 | Msa0821680 | 0.805166 | 1.521918e-49 | -8.615850e-47 |
| Msa0101880 | Msa0821680 | 0.802041 | 6.770714e-49 | -8.615850e-47 |
| Msa0108870 | Msa0821680 | 0.804463 | 2.134065e-49 | -8.615850e-47 |
| Msa0607510 | Msa0821680 | 0.808840 | 2.541130e-50 | -8.615850e-47 |
| Msa0619920 | Msa0821680 | 0.815259 | 1.013249e-51 | -8.615850e-47 |
| Msa0659990 | Msa0821680 | 0.811926 | 5.482588e-51 | -8.615850e-47 |
| Msa0669760 | Msa0821680 | 0.807702 | 4.443484e-50 | -8.615850e-47 |
| Msa0677770 | Msa0821680 | 0.810614 | 1.055895e-50 | -8.615850e-47 |
| Msa0697720 | Msa0821680 | 0.816872 | 4.419454e-52 | -8.615850e-47 |
| Msa0738100 | Msa0821680 | 0.812767 | 3.591305e-51 | -8.615850e-47 |
| Msa0745200 | Msa0821680 | 0.816040 | 6.788150e-52 | -8.615850e-47 |
| Msa0805500 | Msa0821680 | 0.812938 | 3.295730e-51 | -8.615850e-47 |
| Msa0818170 | Msa0821680 | 0.806049 | 9.935230e-50 | -8.615850e-47 |
| Msa0821680 | Msa0869010 | 0.810351 | 1.203465e-50 | -8.615850e-47 |
| Msa0821680 | Msa0885880 | 0.801549 | 8.542909e-49 | -8.615850e-47 |
| Msa0821680 | Msa0933290 | 0.831248 | 1.859054e-55 | -8.615850e-47 |
| Msa0821680 | Msa0973320 | 0.801283 | 9.686798e-49 | -8.615850e-47 |
| Msa0821680 | Msa1071530 | 0.802643 | 5.088716e-49 | -8.615850e-47 |
| Msa0821680 | Msa1083880 | 0.802778 | 4.772882e-49 | -8.615850e-47 |
| Msa0821680 | Msa1166870 | 0.805171 | 1.518406e-49 | -8.615850e-47 |
| Msa0821680 | Msa1175300 | 0.806763 | 7.023074e-50 | -8.615850e-47 |
| Msa0821680 | Msa1223330 | 0.810908 | 9.119994e-51 | -8.615850e-47 |
| Msa0821680 | Msa1253810 | 0.828023 | 1.131623e-54 | -8.615850e-47 |
| Msa0821680 | Msa1271580 | 0.805820 | 1.109935e-49 | -8.615850e-47 |
| Msa0821680 | Msa1288510 | 0.803730 | 3.032373e-49 | -8.615850e-47 |
| Msa0821680 | Msa1310690 | 0.808290 | 3.330839e-50 | -8.615850e-47 |
| Msa0821680 | Msa1323990 | 0.814072 | 1.855575e-51 | -8.615850e-47 |
| Msa0139990 | Msa0821680 | 0.804305 | 2.302431e-49 | -8.615850e-47 |
| Msa0166750 | Msa0821680 | 0.803186 | 3.930805e-49 | -8.615850e-47 |
| Msa0167480 | Msa0821680 | 0.823634 | 1.246601e-53 | -8.615850e-47 |
| Msa0171850 | Msa0821680 | 0.801832 | 7.474690e-49 | -8.615850e-47 |
| Msa0182280 | Msa0821680 | 0.814202 | 1.737413e-51 | -8.615850e-47 |
| Msa0188730 | Msa0821680 | -0.805495 | 1.298713e-49 | -8.615850e-47 |
| Msa0216970 | Msa0821680 | 0.800821 | 1.204138e-48 | -8.615850e-47 |
| Msa0221600 | Msa0821680 | 0.816019 | 6.861911e-52 | -8.615850e-47 |
| Msa0384880 | Msa0821680 | 0.817624 | 2.993741e-52 | -8.615850e-47 |
| Msa0392940 | Msa0821680 | 0.820549 | 6.468388e-53 | -8.615850e-47 |
| Msa0394690 | Msa0821680 | 0.831756 | 1.393385e-55 | -8.615850e-47 |
| Msa0403190 | Msa0821680 | 0.809732 | 1.636084e-50 | -8.615850e-47 |
| Msa0431770 | Msa0821680 | 0.810186 | 1.306537e-50 | -8.615850e-47 |
| Msa0251770 | Msa0821680 | 0.803178 | 3.945451e-49 | -8.615850e-47 |
| Msa0291520 | Msa0821680 | 0.815749 | 7.882499e-52 | -8.615850e-47 |
| Msa0311060 | Msa0821680 | 0.824195 | 9.208193e-54 | -8.615850e-47 |
| Msa0561430 | Msa0821680 | 0.807044 | 6.125615e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821680 | MtrunA17_Chr5g0442241 | 93.314 | 688 | 17 | 1 | 6 | 664 | 2 | 689 | 0.0 | 1296 |
| Msa0821680 | MtrunA17_Chr7g0233411 | 77.578 | 223 | 50 | 0 | 152 | 374 | 2 | 224 | 3.29e-112 | 337 |
| Msa0821680 | MtrunA17_Chr2g0292961 | 50.171 | 293 | 112 | 4 | 359 | 650 | 520 | 779 | 1.99e-73 | 252 |
| Msa0821680 | MtrunA17_Chr5g0442271 | 83.077 | 130 | 22 | 0 | 245 | 374 | 1 | 130 | 3.03e-64 | 209 |
| Msa0821680 | MtrunA17_Chr2g0292951 | 41.525 | 354 | 161 | 11 | 34 | 353 | 63 | 404 | 2.18e-48 | 175 |
| Msa0821680 | MtrunA17_Chr5g0442261 | 92.157 | 51 | 4 | 0 | 79 | 129 | 16 | 66 | 2.18e-24 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821680 | AT2G34780.1 | 38.356 | 146 | 88 | 1 | 498 | 641 | 1141 | 1286 | 2.30e-21 | 100 |
| Msa0821680 | AT2G34780.3 | 38.356 | 146 | 88 | 1 | 498 | 641 | 1080 | 1225 | 2.77e-21 | 99.8 |
| Msa0821680 | AT2G34780.4 | 38.356 | 146 | 88 | 1 | 498 | 641 | 1080 | 1225 | 2.77e-21 | 99.8 |
| Msa0821680 | AT2G34780.2 | 38.356 | 146 | 88 | 1 | 498 | 641 | 1080 | 1225 | 2.77e-21 | 99.8 |
Find 141 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGATTTGTCAGATTC+TGG | 0.139636 | 5_3:-59994201 | Msa0821680:CDS |
| TGTACTTTCACATTTAAAAT+AGG | 0.173028 | 5_3:-59992599 | Msa0821680:exon |
| GATAGATGTTAGTATGAAAA+AGG | 0.216137 | 5_3:+59992758 | None:intergenic |
| AATAGAAAAGCATGCTTTCT+TGG | 0.217705 | 5_3:+59992834 | None:intergenic |
| CAGAATCTGACAAATCAATT+TGG | 0.232764 | 5_3:+59994202 | None:intergenic |
| TGGAGAAGGCTGAGGGGTAT+AGG | 0.242967 | 5_3:-59995928 | Msa0821680:CDS |
| ATTCAGCGCCTTCTAATAAT+TGG | 0.254250 | 5_3:+59994289 | None:intergenic |
| CTACTTATATATTCGAGTTT+AGG | 0.259509 | 5_3:-59992310 | Msa0821680:three_prime_UTR |
| ACTTTGAGGAAGTGGTTCTT+TGG | 0.271730 | 5_3:-59992697 | Msa0821680:CDS |
| ATGTAGATTGAAGGAGCTTT+TGG | 0.284409 | 5_3:-59996056 | Msa0821680:CDS |
| TTCTAGGTCGGCCGATTTCT+TGG | 0.314740 | 5_3:-59992544 | Msa0821680:three_prime_UTR |
| GACTGTTACTTCTGCTCATC+GGG | 0.316387 | 5_3:-59996155 | Msa0821680:CDS |
| GTACTTTCACATTTAAAATA+GGG | 0.320320 | 5_3:-59992598 | Msa0821680:exon |
| ACTGGAACAAGAAAAGAATA+AGG | 0.321563 | 5_3:-59995975 | Msa0821680:CDS |
| CTATTTCAGTTTGATTTCTC+AGG | 0.324160 | 5_3:+59995555 | None:intergenic |
| TGCCGAAACTTGGAAGTTAC+TGG | 0.325247 | 5_3:-59995993 | Msa0821680:CDS |
| TTCCAGTAACTTCCAAGTTT+CGG | 0.329335 | 5_3:+59995991 | None:intergenic |
| CTTTGAGGAAGTGGTTCTTT+GGG | 0.332707 | 5_3:-59992696 | Msa0821680:CDS |
| CTCTTTGTCCTCCTTCCTCT+TGG | 0.340504 | 5_3:-59992790 | Msa0821680:CDS |
| GATAGTTGCCAATTATTAGA+AGG | 0.346236 | 5_3:-59994297 | Msa0821680:CDS |
| CATTGAGATGGTTAAATTAG+AGG | 0.356846 | 5_3:-59995714 | Msa0821680:CDS |
| AGGCACTTGCACAAGATAAC+TGG | 0.361371 | 5_3:-59995685 | Msa0821680:CDS |
| CTGCTCATCGGGGATGTAAC+GGG | 0.365454 | 5_3:-59996144 | Msa0821680:CDS |
| TCCTCATTGACATAGCTCTT+AGG | 0.368102 | 5_3:-59992574 | Msa0821680:three_prime_UTR |
| GACGAGAATGAGAAGGTATT+AGG | 0.370192 | 5_3:-59996115 | Msa0821680:CDS |
| TGCAATTGCATGCTTGCTAT+TGG | 0.375631 | 5_3:-59994259 | Msa0821680:CDS |
| GATCAACAAATATTGCTATC+TGG | 0.378109 | 5_3:-59992664 | Msa0821680:CDS |
| GTTGCTATCATTGTACTTCT+CGG | 0.387871 | 5_3:-59993526 | Msa0821680:CDS |
| GGAAGAGAGTTGCCGAAACT+TGG | 0.388301 | 5_3:-59996003 | Msa0821680:CDS |
| AGTGGCAGCGGCAGCGGCAG+CGG | 0.389608 | 5_3:-59997068 | Msa0821680:CDS |
| TAGGGTTCAGATTGGTCAAT+TGG | 0.393981 | 5_3:-59995909 | Msa0821680:CDS |
| AATCAATTTGGTTTATCCCT+TGG | 0.394348 | 5_3:+59994214 | None:intergenic |
| CATGGCAGTGGCAGCGGCAG+CGG | 0.394474 | 5_3:-59997074 | Msa0821680:CDS |
| GGAGAAGGCTGAGGGGTATA+GGG | 0.396621 | 5_3:-59995927 | Msa0821680:CDS |
| TTCGCAGCAAGTGTTAATAA+TGG | 0.397662 | 5_3:+59997024 | None:intergenic |
| ATTGTACTTCTCGGTAAACT+TGG | 0.401435 | 5_3:-59993517 | Msa0821680:CDS |
| AGATTAGGTTGTCTAAAGAT+TGG | 0.407992 | 5_3:-59995386 | Msa0821680:CDS |
| CAAGCATGCAATTGCATCAA+TGG | 0.409171 | 5_3:+59994266 | None:intergenic |
| GGGGAACCAGCAGTGAATAA+TGG | 0.410778 | 5_3:-59996199 | Msa0821680:CDS |
| CAGTGAAACCAACCTGTGTT+TGG | 0.411278 | 5_3:+59995291 | None:intergenic |
| CCAATGACACGATATCAATA+AGG | 0.413203 | 5_3:+59994025 | None:intergenic |
| TCGGGGATGTAACGGGGATG+GGG | 0.416833 | 5_3:-59996137 | Msa0821680:CDS |
| CCGATTTCTTGGAAACTAGT+TGG | 0.417991 | 5_3:-59992533 | Msa0821680:three_prime_UTR |
| GTATGCAGCTGATTTATTGC+AGG | 0.422049 | 5_3:+59994336 | None:intergenic |
| TGTCGTCGTATCTTTCTATT+CGG | 0.423358 | 5_3:+59997153 | None:intergenic |
| AATCGAAACCGGGGAGCGAT+TGG | 0.423986 | 5_3:-59996236 | Msa0821680:CDS |
| CCTTATTGATATCGTGTCAT+TGG | 0.427463 | 5_3:-59994025 | Msa0821680:CDS |
| TATTAACACTTGCTGCGAAC+AGG | 0.428860 | 5_3:-59997020 | Msa0821680:intron |
| CCAACTAGTTTCCAAGAAAT+CGG | 0.429335 | 5_3:+59992533 | None:intergenic |
| CTTGTATAGCTGAGAGGGAC+AGG | 0.429483 | 5_3:-59996084 | Msa0821680:CDS |
| TAGACAACGTTGAAACTTTG+AGG | 0.431563 | 5_3:-59992711 | Msa0821680:CDS |
| ATCGGGGATGTAACGGGGAT+GGG | 0.432313 | 5_3:-59996138 | Msa0821680:CDS |
| GGCAGCGGCAGCGGCAGCGG+CGG | 0.434913 | 5_3:-59997065 | Msa0821680:CDS |
| CTGAGTCCATTATTCACTGC+TGG | 0.449977 | 5_3:+59996193 | None:intergenic |
| GTCGAGCATGGCAGTGGCAG+CGG | 0.452892 | 5_3:-59997080 | Msa0821680:exon |
| TCTACGTCACTTTGATGTAC+TGG | 0.457048 | 5_3:-59995351 | Msa0821680:CDS |
| TCATTATTCTTGTCTGTGGT+AGG | 0.463406 | 5_3:+59994123 | None:intergenic |
| TGTGATGTGAAAATCGAAAC+CGG | 0.464040 | 5_3:-59996247 | Msa0821680:CDS |
| AACGGTGGATACGGAGTTCA+AGG | 0.472009 | 5_3:-59992907 | Msa0821680:CDS |
| CGATTGGAAGAATTTAATGC+TGG | 0.474329 | 5_3:-59996220 | Msa0821680:CDS |
| CATCGGGGATGTAACGGGGA+TGG | 0.475195 | 5_3:-59996139 | Msa0821680:CDS |
| TTCAGGATTGGAGTTGATAA+CGG | 0.477336 | 5_3:-59992925 | Msa0821680:intron |
| GTCTCTAGTTATGTTGCTTG+AGG | 0.478013 | 5_3:-59994394 | Msa0821680:CDS |
| TATCGTGTCATTGGTGGAAC+TGG | 0.478151 | 5_3:-59994016 | Msa0821680:CDS |
| TCTCTAGTTATGTTGCTTGA+GGG | 0.479192 | 5_3:-59994393 | Msa0821680:CDS |
| AAGAAAAGCCGAGTTAGAAA+TGG | 0.483870 | 5_3:-59995780 | Msa0821680:CDS |
| TCGGCTCGTGAGCCTTCGAT+TGG | 0.484154 | 5_3:-59992499 | Msa0821680:three_prime_UTR |
| ACGTTGAAACTTTGAGGAAG+TGG | 0.486694 | 5_3:-59992705 | Msa0821680:CDS |
| CTAGTTGGAGTTGATTCAAT+CGG | 0.486895 | 5_3:-59992518 | Msa0821680:three_prime_UTR |
| CGGTTGTTTGAAAAGATGCC+TGG | 0.489614 | 5_3:-59994094 | Msa0821680:CDS |
| AGACTGTTACTTCTGCTCAT+CGG | 0.490563 | 5_3:-59996156 | Msa0821680:CDS |
| CTCTAATTTAACCATCTCAA+TGG | 0.491110 | 5_3:+59995715 | None:intergenic |
| GGAGTTGATAACGGTGGATA+CGG | 0.495621 | 5_3:-59992916 | Msa0821680:CDS |
| TCAGATTCTGGATTAATGCC+AGG | 0.495861 | 5_3:-59994189 | Msa0821680:CDS |
| TAAAGCGGCGGCCAGAAGGC+AGG | 0.509943 | 5_3:-59995834 | Msa0821680:CDS |
| TGGAAGAGATAAAGAACTGT+TGG | 0.518542 | 5_3:-59994239 | Msa0821680:CDS |
| AGATAACTGGAACAAGTTTG+TGG | 0.518705 | 5_3:-59995672 | Msa0821680:CDS |
| CAGGGAAATATGTAGATTGA+AGG | 0.518926 | 5_3:-59996065 | Msa0821680:CDS |
| TGTCGAACATTATCATTGCC+TGG | 0.519307 | 5_3:+59994171 | None:intergenic |
| TATTTCAGTTTGATTTCTCA+GGG | 0.522390 | 5_3:+59995556 | None:intergenic |
| AAGGAGGACAAAGAGTGTAT+TGG | 0.526840 | 5_3:+59992798 | None:intergenic |
| GGAACTGGTAGCAAACGAAA+TGG | 0.527388 | 5_3:-59994001 | Msa0821680:intron |
| TAAAGAACTGTTGGCTCCAA+GGG | 0.528818 | 5_3:-59994230 | Msa0821680:CDS |
| TATTGATATCGTGTCATTGG+TGG | 0.528862 | 5_3:-59994022 | Msa0821680:CDS |
| CTGGAACAAGAAAAGAATAA+GGG | 0.534773 | 5_3:-59995974 | Msa0821680:CDS |
| GCAAATTGCAAAACTTAAAG+TGG | 0.534958 | 5_3:-59995948 | Msa0821680:CDS |
| AAAAGCTAACGAAAAGTTGA+AGG | 0.536384 | 5_3:-59995756 | Msa0821680:CDS |
| GACAAGAATAATGATGTGTC+CGG | 0.536835 | 5_3:-59994114 | Msa0821680:CDS |
| ATAAAGAACTGTTGGCTCCA+AGG | 0.538367 | 5_3:-59994231 | Msa0821680:CDS |
| TGATTTATTGCAGGAAGACA+AGG | 0.538740 | 5_3:+59994345 | None:intergenic |
| TGCAAAACTTAAAGTGGAGA+AGG | 0.539847 | 5_3:-59995942 | Msa0821680:CDS |
| TCCCAATACAGAGCTGGCAC+TGG | 0.539914 | 5_3:-59993615 | Msa0821680:intron |
| TGTTTAAAGCGGCGGCCAGA+AGG | 0.542839 | 5_3:-59995838 | Msa0821680:CDS |
| GGTTAAATTAGAGGAGCAGA+AGG | 0.543577 | 5_3:-59995705 | Msa0821680:CDS |
| TCTGCTCATCGGGGATGTAA+CGG | 0.543958 | 5_3:-59996145 | Msa0821680:CDS |
| AGAAGATAAGAGTACAATTG+AGG | 0.544002 | 5_3:-59995609 | Msa0821680:CDS |
| GATTGGAAGAATTTAATGCT+GGG | 0.544500 | 5_3:-59996219 | Msa0821680:CDS |
| TTTGCGAATCTCGTCGAGCA+TGG | 0.545018 | 5_3:-59997092 | Msa0821680:exon |
| AAAGAAGGGCTGATTCTAAG+AGG | 0.549300 | 5_3:-59996024 | Msa0821680:CDS |
| AATCTCGTCGAGCATGGCAG+TGG | 0.552054 | 5_3:-59997086 | Msa0821680:exon |
| AAATTCTTCCAATCGCTCCC+CGG | 0.555741 | 5_3:+59996228 | None:intergenic |
| TACAAGCTTGTATAGCTGAG+AGG | 0.559281 | 5_3:-59996090 | Msa0821680:CDS |
| GAGGACAAAGAGTGTATTGG+CGG | 0.560007 | 5_3:+59992801 | None:intergenic |
| CACATCATTATTCTTGTCTG+TGG | 0.562921 | 5_3:+59994119 | None:intergenic |
| TTGTACTTCTCGGTAAACTT+GGG | 0.565277 | 5_3:-59993516 | Msa0821680:CDS |
| ACAAGCTTGTATAGCTGAGA+GGG | 0.568745 | 5_3:-59996089 | Msa0821680:CDS |
| GACAAAGAGTGTATTGGCGG+TGG | 0.570007 | 5_3:+59992804 | None:intergenic |
| TCAAGCATGTCGAGCAGCTG+AGG | 0.577401 | 5_3:+59993574 | None:intergenic |
| GACATCTGTGTTTAAAGCGG+CGG | 0.579669 | 5_3:-59995846 | Msa0821680:CDS |
| ACAACGGTCTAATGAAGAAG+TGG | 0.588536 | 5_3:-59994151 | Msa0821680:CDS |
| GAGGGGTATAGGGTTCAGAT+TGG | 0.592717 | 5_3:-59995917 | Msa0821680:CDS |
| ACTTAAAGTGGAGAAGGCTG+AGG | 0.598613 | 5_3:-59995936 | Msa0821680:CDS |
| CTTAAAGTGGAGAAGGCTGA+GGG | 0.601753 | 5_3:-59995935 | Msa0821680:CDS |
| TGCTCATCGGGGATGTAACG+GGG | 0.604146 | 5_3:-59996143 | Msa0821680:CDS |
| GTGATGTGAAAATCGAAACC+GGG | 0.608359 | 5_3:-59996246 | Msa0821680:CDS |
| TACTTCTCGGTAAACTTGGG+AGG | 0.610159 | 5_3:-59993513 | Msa0821680:intron |
| AAGGAGCAGTAACATCGGAT+AGG | 0.611277 | 5_3:+59994364 | None:intergenic |
| TTGTATAGCTGAGAGGGACA+GGG | 0.613179 | 5_3:-59996083 | Msa0821680:CDS |
| AAAGCACAAAGCCATTGAGA+TGG | 0.613517 | 5_3:-59995726 | Msa0821680:CDS |
| TCCTAAGAGCTATGTCAATG+AGG | 0.614106 | 5_3:+59992573 | None:intergenic |
| GGATGGGGACGAGAATGAGA+AGG | 0.624011 | 5_3:-59996122 | Msa0821680:CDS |
| AGGATTGGAGTTGATAACGG+TGG | 0.627045 | 5_3:-59992922 | Msa0821680:CDS |
| GCAGCATGTAAGCCAATCGA+AGG | 0.629487 | 5_3:+59992487 | None:intergenic |
| ATTGGAAGAATTTAATGCTG+GGG | 0.631958 | 5_3:-59996218 | Msa0821680:CDS |
| GGGCTTCAAGACCAAGAGGA+AGG | 0.632129 | 5_3:+59992779 | None:intergenic |
| CATGCTTGACACATGTGTAG+AGG | 0.648338 | 5_3:-59993560 | Msa0821680:CDS |
| CAACGGTCTAATGAAGAAGT+GGG | 0.656060 | 5_3:-59994150 | Msa0821680:CDS |
| ATGACATTCTTAAGAGCATG+TGG | 0.657389 | 5_3:+59994057 | None:intergenic |
| CTTCAAGACCAAGAGGAAGG+AGG | 0.657997 | 5_3:+59992782 | None:intergenic |
| TGAGACATCTGTGTTTAAAG+CGG | 0.658950 | 5_3:-59995849 | Msa0821680:CDS |
| GTGGTCGAGTATCAGAAACC+AGG | 0.666373 | 5_3:+59994076 | None:intergenic |
| CGATATCAATAAGGTGACAG+AGG | 0.669636 | 5_3:+59994034 | None:intergenic |
| GTACAATTGAGGATTTGAAG+CGG | 0.673242 | 5_3:-59995598 | Msa0821680:CDS |
| AAAAGGGCTTCAAGACCAAG+AGG | 0.678757 | 5_3:+59992775 | None:intergenic |
| AAGACAAGGAGCAGTAACAT+CGG | 0.690748 | 5_3:+59994359 | None:intergenic |
| TGATGTGAAAATCGAAACCG+GGG | 0.694075 | 5_3:-59996245 | Msa0821680:CDS |
| ACTGTTACTTCTGCTCATCG+GGG | 0.711256 | 5_3:-59996154 | Msa0821680:CDS |
| AAGTACACAAGACCAAACAC+AGG | 0.715931 | 5_3:-59995303 | Msa0821680:intron |
| GCAATGATAATGTTCGACAA+CGG | 0.731836 | 5_3:-59994167 | Msa0821680:CDS |
| TTAAAGTGGAGAAGGCTGAG+GGG | 0.746581 | 5_3:-59995934 | Msa0821680:CDS |
| TGTGGAAGTGAAATGTCGTG+CGG | 0.759167 | 5_3:-59995654 | Msa0821680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAACTTTACTTAATTAAA+GGG | + | chr5_3:59994688-59994707 | None:intergenic | 10.0% |
| !! | ATAAAACTTTACTTAATTAA+AGG | + | chr5_3:59994689-59994708 | None:intergenic | 10.0% |
| !!! | TAACTTCATTAATTTTTTTA+AGG | + | chr5_3:59994776-59994795 | None:intergenic | 10.0% |
| !! | TATACATAATTTAAAAAACA+GGG | + | chr5_3:59995551-59995570 | None:intergenic | 10.0% |
| !! | ATATACATAATTTAAAAAAC+AGG | + | chr5_3:59995552-59995571 | None:intergenic | 10.0% |
| !!! | ATGGTTTTAATTAAGAAAAA+AGG | + | chr5_3:59992545-59992564 | None:intergenic | 15.0% |
| !!! | TTGATAGTAATTTGATAAAA+TGG | - | chr5_3:59993074-59993093 | Msa0821680:intron | 15.0% |
| !! | AAAATTCAACAATATGAAAT+TGG | - | chr5_3:59995659-59995678 | Msa0821680:CDS | 15.0% |
| !!! | GATAAGATTAAGTTTTTATA+TGG | - | chr5_3:59995763-59995782 | Msa0821680:CDS | 15.0% |
| !!! | TTATTGATTTTTTGTATAAC+TGG | + | chr5_3:59996225-59996244 | None:intergenic | 15.0% |
| !!! | AATTTTATAAATTTCAGGAT+TGG | - | chr5_3:59996560-59996579 | Msa0821680:intron | 15.0% |
| !!! | AATTTTGTTTTGCAATCTAA+TGG | - | chr5_3:59992283-59992302 | Msa0821680:three_prime_UTR | 20.0% |
| !! | AATATGTTTATAAACCCAAA+AGG | + | chr5_3:59994482-59994501 | None:intergenic | 20.0% |
| !!! | ACTTAATTAAAGGGTATTTT+AGG | + | chr5_3:59994679-59994698 | None:intergenic | 20.0% |
| !!! | AAGTTAACTACTTTTCTTAA+AGG | - | chr5_3:59994790-59994809 | Msa0821680:intron | 20.0% |
| !!! | AGTTAACTACTTTTCTTAAA+GGG | - | chr5_3:59994791-59994810 | Msa0821680:intron | 20.0% |
| !!! | TTTTGCATATATATTAAACC+AGG | - | chr5_3:59994829-59994848 | Msa0821680:intron | 20.0% |
| !!! | GCTTTAGTTTTTTCTTTTTT+GGG | - | chr5_3:59994904-59994923 | Msa0821680:intron | 20.0% |
| !!! | CTTTAGTTTTTTCTTTTTTG+GGG | - | chr5_3:59994905-59994924 | Msa0821680:intron | 20.0% |
| !! | GTAGATATATTTATGAATAG+AGG | - | chr5_3:59996062-59996081 | Msa0821680:CDS | 20.0% |
| !! | ATAGATGTTAGTATGAAAAA+GGG | + | chr5_3:59996741-59996760 | None:intergenic | 20.0% |
| !!! | TGTACTTTCACATTTAAAAT+AGG | - | chr5_3:59996898-59996917 | Msa0821680:intron | 20.0% |
| !!! | GTACTTTCACATTTAAAATA+GGG | - | chr5_3:59996899-59996918 | Msa0821680:intron | 20.0% |
| !! | ATTTATACTCTCAAGTTAAA+TGG | - | chr5_3:59997143-59997162 | Msa0821680:five_prime_UTR | 20.0% |
| !! | TTTATACTCTCAAGTTAAAT+GGG | - | chr5_3:59997144-59997163 | Msa0821680:five_prime_UTR | 20.0% |
| !! | GAATATATAAGTAGCTAAAT+TGG | + | chr5_3:59997181-59997200 | None:intergenic | 20.0% |
| !! | TATTTCAGTTTGATTTCTCA+GGG | + | chr5_3:59993944-59993963 | None:intergenic | 25.0% |
| !!! | TTCTAACTTGTATTTTAGCT+TGG | + | chr5_3:59994064-59994083 | None:intergenic | 25.0% |
| !! | AGTATTTTACATCACAGATT+AGG | - | chr5_3:59994096-59994115 | Msa0821680:CDS | 25.0% |
| ! | TACTTACATGATTAAGGTAT+AGG | - | chr5_3:59994396-59994415 | Msa0821680:CDS | 25.0% |
| !! | TTAAGATTACCATTTTCCAA+AGG | + | chr5_3:59994531-59994550 | None:intergenic | 25.0% |
| ! | TTTGGAAAATGGTAATCTTA+AGG | - | chr5_3:59994530-59994549 | Msa0821680:intron | 25.0% |
| ! | TGTTCAGTTGTTAACTTTAT+AGG | - | chr5_3:59994874-59994893 | Msa0821680:intron | 25.0% |
| !!! | GGCTTTAGTTTTTTCTTTTT+TGG | - | chr5_3:59994903-59994922 | Msa0821680:intron | 25.0% |
| !! | CTTCATAATTTTGCTTATCT+GGG | - | chr5_3:59995026-59995045 | Msa0821680:intron | 25.0% |
| !!! | TTTTTCGACATGGATAATTT+TGG | - | chr5_3:59995059-59995078 | Msa0821680:intron | 25.0% |
| !! | TAATGTCACTTGTCATTAAA+GGG | + | chr5_3:59995603-59995622 | None:intergenic | 25.0% |
| !! | ATAATGTCACTTGTCATTAA+AGG | + | chr5_3:59995604-59995623 | None:intergenic | 25.0% |
| ! | AATAAGTGAATTGTTACCAA+GGG | - | chr5_3:59995741-59995760 | Msa0821680:CDS | 25.0% |
| ! | AAAAACTTAATCTTATCCCT+TGG | + | chr5_3:59995760-59995779 | None:intergenic | 25.0% |
| ! | CTTATATATACATGTGAACT+AGG | - | chr5_3:59996438-59996457 | Msa0821680:intron | 25.0% |
| ! | TTGTTTACGTTATAACAATG+TGG | - | chr5_3:59996535-59996554 | Msa0821680:intron | 25.0% |
| !! | TGGCGAATTTTATAAATTTC+AGG | - | chr5_3:59996555-59996574 | Msa0821680:intron | 25.0% |
| ! | GATAGATGTTAGTATGAAAA+AGG | + | chr5_3:59996742-59996761 | None:intergenic | 25.0% |
| !!! | TAAGTAGCTAAATTGGTTTT+GGG | + | chr5_3:59997174-59997193 | None:intergenic | 25.0% |
| !!! | ATAAGTAGCTAAATTGGTTT+TGG | + | chr5_3:59997175-59997194 | None:intergenic | 25.0% |
| !! | CTACTTATATATTCGAGTTT+AGG | - | chr5_3:59997187-59997206 | Msa0821680:five_prime_UTR | 25.0% |
| ACGAATTGAACTGAAAAAGA+CGG | - | chr5_3:59992379-59992398 | Msa0821680:intron | 30.0% | |
| GCGAATCAAATCAAATCAAA+TGG | + | chr5_3:59992564-59992583 | None:intergenic | 30.0% | |
| AACAACCACAATAACAACAA+AGG | - | chr5_3:59992682-59992701 | Msa0821680:CDS | 30.0% | |
| ACGGTTTATGTCAAAAACAT+AGG | + | chr5_3:59992994-59993013 | None:intergenic | 30.0% | |
| ! | AGTCTATCAATCTAAAGTGT+CGG | - | chr5_3:59993126-59993145 | Msa0821680:intron | 30.0% |
| CAATGAAATGCATTGTAATG+CGG | - | chr5_3:59993201-59993220 | Msa0821680:intron | 30.0% | |
| GATTGGAAGAATTTAATGCT+GGG | - | chr5_3:59993278-59993297 | Msa0821680:intron | 30.0% | |
| ATTGGAAGAATTTAATGCTG+GGG | - | chr5_3:59993279-59993298 | Msa0821680:intron | 30.0% | |
| !! | TTTTGGAGAGTGAAAAAAGA+AGG | - | chr5_3:59993458-59993477 | Msa0821680:intron | 30.0% |
| TTTGGAGAGTGAAAAAAGAA+GGG | - | chr5_3:59993459-59993478 | Msa0821680:intron | 30.0% | |
| ACTGGAACAAGAAAAGAATA+AGG | - | chr5_3:59993522-59993541 | Msa0821680:CDS | 30.0% | |
| CTGGAACAAGAAAAGAATAA+GGG | - | chr5_3:59993523-59993542 | Msa0821680:CDS | 30.0% | |
| GCAAATTGCAAAACTTAAAG+TGG | - | chr5_3:59993549-59993568 | Msa0821680:CDS | 30.0% | |
| AAAAGCTAACGAAAAGTTGA+AGG | - | chr5_3:59993741-59993760 | Msa0821680:intron | 30.0% | |
| CTCTAATTTAACCATCTCAA+TGG | + | chr5_3:59993785-59993804 | None:intergenic | 30.0% | |
| CATTGAGATGGTTAAATTAG+AGG | - | chr5_3:59993783-59993802 | Msa0821680:intron | 30.0% | |
| ! | AGAAGATAAGAGTACAATTG+AGG | - | chr5_3:59993888-59993907 | Msa0821680:intron | 30.0% |
| ! | CTATTTCAGTTTGATTTCTC+AGG | + | chr5_3:59993945-59993964 | None:intergenic | 30.0% |
| ! | AGATTAGGTTGTCTAAAGAT+TGG | - | chr5_3:59994111-59994130 | Msa0821680:CDS | 30.0% |
| TTGGTTGTGTTGTAAATTAC+TGG | - | chr5_3:59994455-59994474 | Msa0821680:intron | 30.0% | |
| ! | TTGTAAATTACTGGACCTTT+TGG | - | chr5_3:59994464-59994483 | Msa0821680:intron | 30.0% |
| ! | TGTAAATTACTGGACCTTTT+GGG | - | chr5_3:59994465-59994484 | Msa0821680:intron | 30.0% |
| TTGTGGCTTATATTCAAAAC+CGG | + | chr5_3:59994587-59994606 | None:intergenic | 30.0% | |
| !!! | CTGCAAAACATGATTTTTTG+TGG | + | chr5_3:59994604-59994623 | None:intergenic | 30.0% |
| TAATAGAACAATTTCCCATG+AGG | - | chr5_3:59994716-59994735 | Msa0821680:intron | 30.0% | |
| AATAGAACAATTTCCCATGA+GGG | - | chr5_3:59994717-59994736 | Msa0821680:intron | 30.0% | |
| TTATTTAAACTACCCCTCAT+GGG | + | chr5_3:59994733-59994752 | None:intergenic | 30.0% | |
| ATTATTTAAACTACCCCTCA+TGG | + | chr5_3:59994734-59994753 | None:intergenic | 30.0% | |
| !! | TACTTTTCTTAAAGGGTGTA+AGG | - | chr5_3:59994798-59994817 | Msa0821680:intron | 30.0% |
| TGTTAACTTTATAGGATACG+TGG | - | chr5_3:59994882-59994901 | Msa0821680:intron | 30.0% | |
| ! | AGTCTCTTAGATTTTGCAAA+TGG | - | chr5_3:59994979-59994998 | Msa0821680:intron | 30.0% |
| ! | GTCTCTTAGATTTTGCAAAT+GGG | - | chr5_3:59994980-59994999 | Msa0821680:intron | 30.0% |
| ! | GCTTCATAATTTTGCTTATC+TGG | - | chr5_3:59995025-59995044 | Msa0821680:intron | 30.0% |
| GATAGTTGCCAATTATTAGA+AGG | - | chr5_3:59995200-59995219 | Msa0821680:intron | 30.0% | |
| ! | AATCAATTTGGTTTATCCCT+TGG | + | chr5_3:59995286-59995305 | None:intergenic | 30.0% |
| CAGAATCTGACAAATCAATT+TGG | + | chr5_3:59995298-59995317 | None:intergenic | 30.0% | |
| !! | CAAATTGATTTGTCAGATTC+TGG | - | chr5_3:59995296-59995315 | Msa0821680:intron | 30.0% |
| ATATCGAGCTCAAATTTGAA+AGG | - | chr5_3:59995568-59995587 | Msa0821680:CDS | 30.0% | |
| ACAACTGTGAACTAGAATTA+TGG | + | chr5_3:59995685-59995704 | None:intergenic | 30.0% | |
| GAATAAGTGAATTGTTACCA+AGG | - | chr5_3:59995740-59995759 | Msa0821680:CDS | 30.0% | |
| TTGTGTTCTTCTCATTCTTA+TGG | - | chr5_3:59995793-59995812 | Msa0821680:CDS | 30.0% | |
| ATACTAGAACCTAATTCCTT+GGG | - | chr5_3:59995853-59995872 | Msa0821680:CDS | 30.0% | |
| ACATCTTTACTGAAGATTGA+TGG | - | chr5_3:59996143-59996162 | Msa0821680:CDS | 30.0% | |
| ! | TTTTGTCAAGTGACATAACT+TGG | - | chr5_3:59996188-59996207 | Msa0821680:CDS | 30.0% |
| ATATATCTCCTCAACAATGA+GGG | - | chr5_3:59996271-59996290 | Msa0821680:intron | 30.0% | |
| GTGATTATTTGCTTGTTCTA+TGG | - | chr5_3:59996319-59996338 | Msa0821680:intron | 30.0% | |
| TGAAGCTCAATTAGTAATAC+TGG | + | chr5_3:59996405-59996424 | None:intergenic | 30.0% | |
| ! | AATAGAAAAGCATGCTTTCT+TGG | + | chr5_3:59996666-59996685 | None:intergenic | 30.0% |
| GATCAACAAATATTGCTATC+TGG | - | chr5_3:59996833-59996852 | Msa0821680:intron | 30.0% | |
| ! | TTAGGAAAGTTTTTCTAGGT+CGG | - | chr5_3:59996941-59996960 | Msa0821680:intron | 30.0% |
| TGTCGTCGTATCTTTCTATT+CGG | + | chr5_3:59992347-59992366 | None:intergenic | 35.0% | |
| AATTGAACTGAAAAAGACGG+CGG | - | chr5_3:59992382-59992401 | Msa0821680:intron | 35.0% | |
| TTCGCAGCAAGTGTTAATAA+TGG | + | chr5_3:59992476-59992495 | None:intergenic | 35.0% | |
| !! | TGATTTGATTTGATTCGCAG+TGG | - | chr5_3:59992566-59992585 | Msa0821680:three_prime_UTR | 35.0% |
| ! | GTTGTTATTGTGGTTGTTGA+GGG | + | chr5_3:59992680-59992699 | None:intergenic | 35.0% |
| ! | TGTTGTTATTGTGGTTGTTG+AGG | + | chr5_3:59992681-59992700 | None:intergenic | 35.0% |
| ACCACAATAACAACAAAGGT+AGG | - | chr5_3:59992686-59992705 | Msa0821680:CDS | 35.0% | |
| !! | ACCTACCTTTGTTGTTATTG+TGG | + | chr5_3:59992690-59992709 | None:intergenic | 35.0% |
| ! | ACTAGCTTAGTAGAGTCATT+TGG | + | chr5_3:59992862-59992881 | None:intergenic | 35.0% |
| ! | ACTCTACTAAGCTAGTGTTT+TGG | - | chr5_3:59992866-59992885 | Msa0821680:CDS | 35.0% |
| TGTGATGTGAAAATCGAAAC+CGG | - | chr5_3:59993250-59993269 | Msa0821680:intron | 35.0% | |
| CGATTGGAAGAATTTAATGC+TGG | - | chr5_3:59993277-59993296 | Msa0821680:intron | 35.0% | |
| CAGGGAAATATGTAGATTGA+AGG | - | chr5_3:59993432-59993451 | Msa0821680:intron | 35.0% | |
| ! | ATGTAGATTGAAGGAGCTTT+TGG | - | chr5_3:59993441-59993460 | Msa0821680:intron | 35.0% |
| TTCCAGTAACTTCCAAGTTT+CGG | + | chr5_3:59993509-59993528 | None:intergenic | 35.0% | |
| TGCAAAACTTAAAGTGGAGA+AGG | - | chr5_3:59993555-59993574 | Msa0821680:CDS | 35.0% | |
| TGAGACATCTGTGTTTAAAG+CGG | - | chr5_3:59993648-59993667 | Msa0821680:intron | 35.0% | |
| !!! | CTTTTTAAAATCCTGCCTTC+TGG | + | chr5_3:59993677-59993696 | None:intergenic | 35.0% |
| AAGAAAAGCCGAGTTAGAAA+TGG | - | chr5_3:59993717-59993736 | Msa0821680:intron | 35.0% | |
| !! | AGCTTTTGCCATTTCTAACT+CGG | + | chr5_3:59993728-59993747 | None:intergenic | 35.0% |
| AGATAACTGGAACAAGTTTG+TGG | - | chr5_3:59993825-59993844 | Msa0821680:intron | 35.0% | |
| GTACAATTGAGGATTTGAAG+CGG | - | chr5_3:59993899-59993918 | Msa0821680:intron | 35.0% | |
| !!! | GCATCTTTTTTGTCTGTTTC+AGG | - | chr5_3:59994171-59994190 | Msa0821680:CDS | 35.0% |
| CTGGCATACTTACATGATTA+AGG | - | chr5_3:59994390-59994409 | Msa0821680:CDS | 35.0% | |
| ATAGAACAATTTCCCATGAG+GGG | - | chr5_3:59994718-59994737 | Msa0821680:intron | 35.0% | |
| TTGCAAATGGGATTCTCTAA+TGG | - | chr5_3:59994992-59995011 | Msa0821680:intron | 35.0% | |
| ! | CATAATTTTGCTTATCTGGG+TGG | - | chr5_3:59995029-59995048 | Msa0821680:intron | 35.0% |
| !!! | CGACATGGATAATTTTGGTT+TGG | - | chr5_3:59995064-59995083 | Msa0821680:intron | 35.0% |
| !!! | CATGGATAATTTTGGTTTGG+TGG | - | chr5_3:59995067-59995086 | Msa0821680:intron | 35.0% |
| ! | TCTCTAGTTATGTTGCTTGA+GGG | - | chr5_3:59995104-59995123 | Msa0821680:intron | 35.0% |
| TGATTTATTGCAGGAAGACA+AGG | + | chr5_3:59995155-59995174 | None:intergenic | 35.0% | |
| ATTCAGCGCCTTCTAATAAT+TGG | + | chr5_3:59995211-59995230 | None:intergenic | 35.0% | |
| TGGAAGAGATAAAGAACTGT+TGG | - | chr5_3:59995258-59995277 | Msa0821680:intron | 35.0% | |
| ! | GCAATGATAATGTTCGACAA+CGG | - | chr5_3:59995330-59995349 | Msa0821680:CDS | 35.0% |
| TCATTATTCTTGTCTGTGGT+AGG | + | chr5_3:59995377-59995396 | None:intergenic | 35.0% | |
| CACATCATTATTCTTGTCTG+TGG | + | chr5_3:59995381-59995400 | None:intergenic | 35.0% | |
| GACAAGAATAATGATGTGTC+CGG | - | chr5_3:59995383-59995402 | Msa0821680:CDS | 35.0% | |
| ! | ATGACATTCTTAAGAGCATG+TGG | + | chr5_3:59995443-59995462 | None:intergenic | 35.0% |
| CCAATGACACGATATCAATA+AGG | + | chr5_3:59995475-59995494 | None:intergenic | 35.0% | |
| CCTTATTGATATCGTGTCAT+TGG | - | chr5_3:59995472-59995491 | Msa0821680:CDS | 35.0% | |
| ! | TATTGATATCGTGTCATTGG+TGG | - | chr5_3:59995475-59995494 | Msa0821680:CDS | 35.0% |
| GAATACATTATGACATCGTG+TGG | - | chr5_3:59995819-59995838 | Msa0821680:CDS | 35.0% | |
| CATACTAGAACCTAATTCCT+TGG | - | chr5_3:59995852-59995871 | Msa0821680:CDS | 35.0% | |
| GTTGCTATCATTGTACTTCT+CGG | - | chr5_3:59995971-59995990 | Msa0821680:CDS | 35.0% | |
| ATTGTACTTCTCGGTAAACT+TGG | - | chr5_3:59995980-59995999 | Msa0821680:CDS | 35.0% | |
| TTGTACTTCTCGGTAAACTT+GGG | - | chr5_3:59995981-59996000 | Msa0821680:CDS | 35.0% | |
| TATGCTTATCACGAATGTGA+GGG | - | chr5_3:59996101-59996120 | Msa0821680:CDS | 35.0% | |
| GATATATCTCCTCAACAATG+AGG | - | chr5_3:59996270-59996289 | Msa0821680:intron | 35.0% | |
| ACATATGCCTCGCAAAAAAA+AGG | + | chr5_3:59996379-59996398 | None:intergenic | 35.0% | |
| !! | TTCAGGATTGGAGTTGATAA+CGG | - | chr5_3:59996572-59996591 | Msa0821680:intron | 35.0% |
| TAGACAACGTTGAAACTTTG+AGG | - | chr5_3:59996786-59996805 | Msa0821680:intron | 35.0% | |
| ! | GCTCTTAGGAAAGTTTTTCT+AGG | - | chr5_3:59996937-59996956 | Msa0821680:intron | 35.0% |
| ! | CCAACTAGTTTCCAAGAAAT+CGG | + | chr5_3:59996967-59996986 | None:intergenic | 35.0% |
| ! | CTAGTTGGAGTTGATTCAAT+CGG | - | chr5_3:59996979-59996998 | Msa0821680:intron | 35.0% |
| ! | AGGTTCCATCAAGCAATTTT+TGG | - | chr5_3:59997207-59997226 | Msa0821680:five_prime_UTR | 35.0% |
| GCTATCCAAAAATTGCTTGA+TGG | + | chr5_3:59997215-59997234 | None:intergenic | 35.0% | |
| ! | TATTAACACTTGCTGCGAAC+AGG | - | chr5_3:59992477-59992496 | Msa0821680:three_prime_UTR | 40.0% |
| AGAAGTGAGAGAGAGAAAAG+GGG | + | chr5_3:59992522-59992541 | None:intergenic | 40.0% | |
| GAGAAGTGAGAGAGAGAAAA+GGG | + | chr5_3:59992523-59992542 | None:intergenic | 40.0% | |
| GTGATGTGAAAATCGAAACC+GGG | - | chr5_3:59993251-59993270 | Msa0821680:intron | 40.0% | |
| TGATGTGAAAATCGAAACCG+GGG | - | chr5_3:59993252-59993271 | Msa0821680:intron | 40.0% | |
| ! | AGACTGTTACTTCTGCTCAT+CGG | - | chr5_3:59993341-59993360 | Msa0821680:intron | 40.0% |
| !! | GACGAGAATGAGAAGGTATT+AGG | - | chr5_3:59993382-59993401 | Msa0821680:intron | 40.0% |
| TACAAGCTTGTATAGCTGAG+AGG | - | chr5_3:59993407-59993426 | Msa0821680:intron | 40.0% | |
| ACAAGCTTGTATAGCTGAGA+GGG | - | chr5_3:59993408-59993427 | Msa0821680:intron | 40.0% | |
| ! | AAAGAAGGGCTGATTCTAAG+AGG | - | chr5_3:59993473-59993492 | Msa0821680:intron | 40.0% |
| ! | TAGGGTTCAGATTGGTCAAT+TGG | - | chr5_3:59993588-59993607 | Msa0821680:CDS | 40.0% |
| AAAGCACAAAGCCATTGAGA+TGG | - | chr5_3:59993771-59993790 | Msa0821680:intron | 40.0% | |
| GGTTAAATTAGAGGAGCAGA+AGG | - | chr5_3:59993792-59993811 | Msa0821680:intron | 40.0% | |
| !! | AGTTTTCGCACTGATGTCAA+CGG | + | chr5_3:59993968-59993987 | None:intergenic | 40.0% |
| ! | TCTACGTCACTTTGATGTAC+TGG | - | chr5_3:59994146-59994165 | Msa0821680:CDS | 40.0% |
| AAGTACACAAGACCAAACAC+AGG | - | chr5_3:59994194-59994213 | Msa0821680:CDS | 40.0% | |
| !! | TAGGACTAGCTATCTATGTC+AGG | - | chr5_3:59994415-59994434 | Msa0821680:CDS | 40.0% |
| GGCATTAGTGATTGTGAAGT+TGG | - | chr5_3:59994436-59994455 | Msa0821680:CDS | 40.0% | |
| ! | CTTATCCTGCCTTTGGAAAA+TGG | - | chr5_3:59994519-59994538 | Msa0821680:intron | 40.0% |
| ! | GATTACCATTTTCCAAAGGC+AGG | + | chr5_3:59994527-59994546 | None:intergenic | 40.0% |
| CAATGAACAATTACTCCCTC+CGG | - | chr5_3:59994565-59994584 | Msa0821680:intron | 40.0% | |
| GGCTTATATTCAAAACCGGA+GGG | + | chr5_3:59994583-59994602 | None:intergenic | 40.0% | |
| TGGCTTATATTCAAAACCGG+AGG | + | chr5_3:59994584-59994603 | None:intergenic | 40.0% | |
| ! | CTTGTATGTGCGTGATTTTG+TGG | - | chr5_3:59994938-59994957 | Msa0821680:intron | 40.0% |
| !! | TGGACAGAAGTTTTTCGACA+TGG | - | chr5_3:59995049-59995068 | Msa0821680:intron | 40.0% |
| ! | GTCTCTAGTTATGTTGCTTG+AGG | - | chr5_3:59995103-59995122 | Msa0821680:intron | 40.0% |
| AAGACAAGGAGCAGTAACAT+CGG | + | chr5_3:59995141-59995160 | None:intergenic | 40.0% | |
| ! | GTATGCAGCTGATTTATTGC+AGG | + | chr5_3:59995164-59995183 | None:intergenic | 40.0% |
| CAAGCATGCAATTGCATCAA+TGG | + | chr5_3:59995234-59995253 | None:intergenic | 40.0% | |
| !! | TGCAATTGCATGCTTGCTAT+TGG | - | chr5_3:59995238-59995257 | Msa0821680:intron | 40.0% |
| !! | ATAAAGAACTGTTGGCTCCA+AGG | - | chr5_3:59995266-59995285 | Msa0821680:intron | 40.0% |
| !! | TAAAGAACTGTTGGCTCCAA+GGG | - | chr5_3:59995267-59995286 | Msa0821680:intron | 40.0% |
| TCAGATTCTGGATTAATGCC+AGG | - | chr5_3:59995308-59995327 | Msa0821680:CDS | 40.0% | |
| TGTCGAACATTATCATTGCC+TGG | + | chr5_3:59995329-59995348 | None:intergenic | 40.0% | |
| ACAACGGTCTAATGAAGAAG+TGG | - | chr5_3:59995346-59995365 | Msa0821680:CDS | 40.0% | |
| CAACGGTCTAATGAAGAAGT+GGG | - | chr5_3:59995347-59995366 | Msa0821680:CDS | 40.0% | |
| ! | CAGGCATCTTTTCAAACAAC+CGG | + | chr5_3:59995405-59995424 | None:intergenic | 40.0% |
| CGATATCAATAAGGTGACAG+AGG | + | chr5_3:59995466-59995485 | None:intergenic | 40.0% | |
| GTATGCTTATCACGAATGTG+AGG | - | chr5_3:59996100-59996119 | Msa0821680:CDS | 40.0% | |
| ATGCTTATCACGAATGTGAG+GGG | - | chr5_3:59996102-59996121 | Msa0821680:CDS | 40.0% | |
| TAACTCAACCCTCATTGTTG+AGG | + | chr5_3:59996282-59996301 | None:intergenic | 40.0% | |
| !!! | TGATCAGCCTTTTTTTTGCG+AGG | - | chr5_3:59996369-59996388 | Msa0821680:intron | 40.0% |
| ! | AAGGAGGACAAAGAGTGTAT+TGG | + | chr5_3:59996702-59996721 | None:intergenic | 40.0% |
| ! | ACGTTGAAACTTTGAGGAAG+TGG | - | chr5_3:59996792-59996811 | Msa0821680:intron | 40.0% |
| ! | ACTTTGAGGAAGTGGTTCTT+TGG | - | chr5_3:59996800-59996819 | Msa0821680:intron | 40.0% |
| ! | CTTTGAGGAAGTGGTTCTTT+GGG | - | chr5_3:59996801-59996820 | Msa0821680:intron | 40.0% |
| TCCTCATTGACATAGCTCTT+AGG | - | chr5_3:59996923-59996942 | Msa0821680:intron | 40.0% | |
| TCCTAAGAGCTATGTCAATG+AGG | + | chr5_3:59996927-59996946 | None:intergenic | 40.0% | |
| CCGATTTCTTGGAAACTAGT+TGG | - | chr5_3:59996964-59996983 | Msa0821680:intron | 40.0% | |
| GAAGTGAGAGAGAGAAAAGG+GGG | + | chr5_3:59992521-59992540 | None:intergenic | 45.0% | |
| GGAGAAGTGAGAGAGAGAAA+AGG | + | chr5_3:59992524-59992543 | None:intergenic | 45.0% | |
| CAAAGACATCTGACACGACA+CGG | + | chr5_3:59993013-59993032 | None:intergenic | 45.0% | |
| GTCGTGTCAGATGTCTTTGT+CGG | - | chr5_3:59993014-59993033 | Msa0821680:intron | 45.0% | |
| TCGTGTCAGATGTCTTTGTC+GGG | - | chr5_3:59993015-59993034 | Msa0821680:intron | 45.0% | |
| AAATTCTTCCAATCGCTCCC+CGG | + | chr5_3:59993272-59993291 | None:intergenic | 45.0% | |
| CTGAGTCCATTATTCACTGC+TGG | + | chr5_3:59993307-59993326 | None:intergenic | 45.0% | |
| ! | GACTGTTACTTCTGCTCATC+GGG | - | chr5_3:59993342-59993361 | Msa0821680:intron | 45.0% |
| ! | ACTGTTACTTCTGCTCATCG+GGG | - | chr5_3:59993343-59993362 | Msa0821680:intron | 45.0% |
| TTGTATAGCTGAGAGGGACA+GGG | - | chr5_3:59993414-59993433 | Msa0821680:intron | 45.0% | |
| TGCCGAAACTTGGAAGTTAC+TGG | - | chr5_3:59993504-59993523 | Msa0821680:intron | 45.0% | |
| ACTTAAAGTGGAGAAGGCTG+AGG | - | chr5_3:59993561-59993580 | Msa0821680:CDS | 45.0% | |
| CTTAAAGTGGAGAAGGCTGA+GGG | - | chr5_3:59993562-59993581 | Msa0821680:CDS | 45.0% | |
| TTAAAGTGGAGAAGGCTGAG+GGG | - | chr5_3:59993563-59993582 | Msa0821680:CDS | 45.0% | |
| ! | GACATCTGTGTTTAAAGCGG+CGG | - | chr5_3:59993651-59993670 | Msa0821680:intron | 45.0% |
| !! | GGCAGGATTTTAAAAAGCGC+AGG | - | chr5_3:59993680-59993699 | Msa0821680:intron | 45.0% |
| AGGCACTTGCACAAGATAAC+TGG | - | chr5_3:59993812-59993831 | Msa0821680:intron | 45.0% | |
| TGTGGAAGTGAAATGTCGTG+CGG | - | chr5_3:59993843-59993862 | Msa0821680:intron | 45.0% | |
| ACACAAGACCAAACACAGGT+TGG | - | chr5_3:59994198-59994217 | Msa0821680:CDS | 45.0% | |
| CAGTGAAACCAACCTGTGTT+TGG | + | chr5_3:59994209-59994228 | None:intergenic | 45.0% | |
| ! | TGTGTGTGCATGCTTTTGAC+GGG | + | chr5_3:59994291-59994310 | None:intergenic | 45.0% |
| ! | GTGTGTGTGCATGCTTTTGA+CGG | + | chr5_3:59994292-59994311 | None:intergenic | 45.0% |
| CACACAAACACACATGAGCT+AGG | - | chr5_3:59994307-59994326 | Msa0821680:CDS | 45.0% | |
| AGTATGCCAGAGTGAGACAT+CGG | + | chr5_3:59994380-59994399 | None:intergenic | 45.0% | |
| CTGAAAGCTTATCCTGCCTT+TGG | - | chr5_3:59994512-59994531 | Msa0821680:intron | 45.0% | |
| !! | AGTGCTGATATATAAGCGCC+TGG | + | chr5_3:59994850-59994869 | None:intergenic | 45.0% |
| AAGGAGCAGTAACATCGGAT+AGG | + | chr5_3:59995136-59995155 | None:intergenic | 45.0% | |
| CGGTTGTTTGAAAAGATGCC+TGG | - | chr5_3:59995403-59995422 | Msa0821680:CDS | 45.0% | |
| ! | TATCGTGTCATTGGTGGAAC+TGG | - | chr5_3:59995481-59995500 | Msa0821680:CDS | 45.0% |
| GGAACTGGTAGCAAACGAAA+TGG | - | chr5_3:59995496-59995515 | Msa0821680:CDS | 45.0% | |
| CATGCTTGACACATGTGTAG+AGG | - | chr5_3:59995937-59995956 | Msa0821680:CDS | 45.0% | |
| TACTTCTCGGTAAACTTGGG+AGG | - | chr5_3:59995984-59996003 | Msa0821680:CDS | 45.0% | |
| GAGGGGCAATATGTGATCAT+TGG | - | chr5_3:59996119-59996138 | Msa0821680:CDS | 45.0% | |
| !! | AGGATTGGAGTTGATAACGG+TGG | - | chr5_3:59996575-59996594 | Msa0821680:intron | 45.0% |
| !! | GGAGTTGATAACGGTGGATA+CGG | - | chr5_3:59996581-59996600 | Msa0821680:intron | 45.0% |
| ! | GAGGACAAAGAGTGTATTGG+CGG | + | chr5_3:59996699-59996718 | None:intergenic | 45.0% |
| AAAAGGGCTTCAAGACCAAG+AGG | + | chr5_3:59996725-59996744 | None:intergenic | 45.0% | |
| !! | ATAAATTAATATATTTGTAT+TGG | - | chr5_3:59992965-59992984 | Msa0821680:intron | 5.0% |
| TTTGCGAATCTCGTCGAGCA+TGG | - | chr5_3:59992405-59992424 | Msa0821680:three_prime_UTR | 50.0% | |
| TGAGAGAGAGAAAAGGGGGT+GGG | + | chr5_3:59992517-59992536 | None:intergenic | 50.0% | |
| GGGGAACCAGCAGTGAATAA+TGG | - | chr5_3:59993298-59993317 | Msa0821680:intron | 50.0% | |
| TCTGCTCATCGGGGATGTAA+CGG | - | chr5_3:59993352-59993371 | Msa0821680:intron | 50.0% | |
| CTTGTATAGCTGAGAGGGAC+AGG | - | chr5_3:59993413-59993432 | Msa0821680:intron | 50.0% | |
| GGAAGAGAGTTGCCGAAACT+TGG | - | chr5_3:59993494-59993513 | Msa0821680:intron | 50.0% | |
| ! | GAGGGGTATAGGGTTCAGAT+TGG | - | chr5_3:59993580-59993599 | Msa0821680:CDS | 50.0% |
| TAGAAGCCGATGTCTCACTC+TGG | - | chr5_3:59994371-59994390 | Msa0821680:CDS | 50.0% | |
| GTGGTCGAGTATCAGAAACC+AGG | + | chr5_3:59995424-59995443 | None:intergenic | 50.0% | |
| !! | GGAAAGGCACCCAAGGAATT+AGG | + | chr5_3:59995865-59995884 | None:intergenic | 50.0% |
| !! | TGTATTGGGAAAGGCACCCA+AGG | + | chr5_3:59995872-59995891 | None:intergenic | 50.0% |
| TGCCTTTCCCAATACAGAGC+TGG | - | chr5_3:59995876-59995895 | Msa0821680:CDS | 50.0% | |
| TGCCAGCTCTGTATTGGGAA+AGG | + | chr5_3:59995881-59995900 | None:intergenic | 50.0% | |
| TCCAGTGCCAGCTCTGTATT+GGG | + | chr5_3:59995886-59995905 | None:intergenic | 50.0% | |
| AACGGTGGATACGGAGTTCA+AGG | - | chr5_3:59996590-59996609 | Msa0821680:intron | 50.0% | |
| ! | GACAAAGAGTGTATTGGCGG+TGG | + | chr5_3:59996696-59996715 | None:intergenic | 50.0% |
| CTCTTTGTCCTCCTTCCTCT+TGG | - | chr5_3:59996707-59996726 | Msa0821680:intron | 50.0% | |
| CTTCAAGACCAAGAGGAAGG+AGG | + | chr5_3:59996718-59996737 | None:intergenic | 50.0% | |
| ! | TTCTAGGTCGGCCGATTTCT+TGG | - | chr5_3:59996953-59996972 | Msa0821680:intron | 50.0% |
| GCAGCATGTAAGCCAATCGA+AGG | + | chr5_3:59997013-59997032 | None:intergenic | 50.0% | |
| AATCTCGTCGAGCATGGCAG+TGG | - | chr5_3:59992411-59992430 | Msa0821680:three_prime_UTR | 55.0% | |
| GTGAGAGAGAGAAAAGGGGG+TGG | + | chr5_3:59992518-59992537 | None:intergenic | 55.0% | |
| AATCGAAACCGGGGAGCGAT+TGG | - | chr5_3:59993261-59993280 | Msa0821680:intron | 55.0% | |
| CTGCTCATCGGGGATGTAAC+GGG | - | chr5_3:59993353-59993372 | Msa0821680:intron | 55.0% | |
| TGCTCATCGGGGATGTAACG+GGG | - | chr5_3:59993354-59993373 | Msa0821680:intron | 55.0% | |
| ! | ATCGGGGATGTAACGGGGAT+GGG | - | chr5_3:59993359-59993378 | Msa0821680:intron | 55.0% |
| GGATGGGGACGAGAATGAGA+AGG | - | chr5_3:59993375-59993394 | Msa0821680:intron | 55.0% | |
| ! | TGGAGAAGGCTGAGGGGTAT+AGG | - | chr5_3:59993569-59993588 | Msa0821680:CDS | 55.0% |
| ! | GGAGAAGGCTGAGGGGTATA+GGG | - | chr5_3:59993570-59993589 | Msa0821680:CDS | 55.0% |
| ! | TGTTTAAAGCGGCGGCCAGA+AGG | - | chr5_3:59993659-59993678 | Msa0821680:intron | 55.0% |
| ! | GTGCATGCTTTTGACGGGAG+TGG | + | chr5_3:59994286-59994305 | None:intergenic | 55.0% |
| TCCCAATACAGAGCTGGCAC+TGG | - | chr5_3:59995882-59995901 | Msa0821680:CDS | 55.0% | |
| GTCCAGTGCCAGCTCTGTAT+TGG | + | chr5_3:59995887-59995906 | None:intergenic | 55.0% | |
| TCAAGCATGTCGAGCAGCTG+AGG | + | chr5_3:59995926-59995945 | None:intergenic | 55.0% | |
| GGGCTTCAAGACCAAGAGGA+AGG | + | chr5_3:59996721-59996740 | None:intergenic | 55.0% | |
| ! | CATCGGGGATGTAACGGGGA+TGG | - | chr5_3:59993358-59993377 | Msa0821680:intron | 60.0% |
| ! | TCGGGGATGTAACGGGGATG+GGG | - | chr5_3:59993360-59993379 | Msa0821680:intron | 60.0% |
| ! | TCGGCTCGTGAGCCTTCGAT+TGG | - | chr5_3:59996998-59997017 | Msa0821680:intron | 60.0% |
| GTCGAGCATGGCAGTGGCAG+CGG | - | chr5_3:59992417-59992436 | Msa0821680:three_prime_UTR | 65.0% | |
| TAAAGCGGCGGCCAGAAGGC+AGG | - | chr5_3:59993663-59993682 | Msa0821680:intron | 65.0% | |
| CATGGCAGTGGCAGCGGCAG+CGG | - | chr5_3:59992423-59992442 | Msa0821680:three_prime_UTR | 70.0% | |
| AGTGGCAGCGGCAGCGGCAG+CGG | - | chr5_3:59992429-59992448 | Msa0821680:three_prime_UTR | 75.0% | |
| ! | GGCAGCGGCAGCGGCAGCGG+CGG | - | chr5_3:59992432-59992451 | Msa0821680:three_prime_UTR | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 59992266 | 59997253 | 59992266 | ID=Msa0821680;Name=Msa0821680 |
| chr5_3 | mRNA | 59992266 | 59997253 | 59992266 | ID=Msa0821680-mRNA-1;Parent=Msa0821680;Name=Msa0821680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=158|0.83|0.85|1|0.83|0.71|7|275|664 |
| chr5_3 | exon | 59992266 | 59992332 | 59992266 | ID=Msa0821680-mRNA-1:exon:18298;Parent=Msa0821680-mRNA-1 |
| chr5_3 | exon | 59992392 | 59992942 | 59992392 | ID=Msa0821680-mRNA-1:exon:18297;Parent=Msa0821680-mRNA-1 |
| chr5_3 | exon | 59993514 | 59993626 | 59993514 | ID=Msa0821680-mRNA-1:exon:18296;Parent=Msa0821680-mRNA-1 |
| chr5_3 | exon | 59994002 | 59994463 | 59994002 | ID=Msa0821680-mRNA-1:exon:18295;Parent=Msa0821680-mRNA-1 |
| chr5_3 | exon | 59995304 | 59996271 | 59995304 | ID=Msa0821680-mRNA-1:exon:18294;Parent=Msa0821680-mRNA-1 |
| chr5_3 | exon | 59996900 | 59996933 | 59996900 | ID=Msa0821680-mRNA-1:exon:18293;Parent=Msa0821680-mRNA-1 |
| chr5_3 | exon | 59997021 | 59997253 | 59997021 | ID=Msa0821680-mRNA-1:exon:18292;Parent=Msa0821680-mRNA-1 |
| chr5_3 | five_prime_UTR | 59997096 | 59997253 | 59997096 | ID=Msa0821680-mRNA-1:five_prime_utr;Parent=Msa0821680-mRNA-1 |
| chr5_3 | CDS | 59997021 | 59997095 | 59997021 | ID=Msa0821680-mRNA-1:cds;Parent=Msa0821680-mRNA-1 |
| chr5_3 | CDS | 59996900 | 59996933 | 59996900 | ID=Msa0821680-mRNA-1:cds;Parent=Msa0821680-mRNA-1 |
| chr5_3 | CDS | 59995304 | 59996271 | 59995304 | ID=Msa0821680-mRNA-1:cds;Parent=Msa0821680-mRNA-1 |
| chr5_3 | CDS | 59994002 | 59994463 | 59994002 | ID=Msa0821680-mRNA-1:cds;Parent=Msa0821680-mRNA-1 |
| chr5_3 | CDS | 59993514 | 59993626 | 59993514 | ID=Msa0821680-mRNA-1:cds;Parent=Msa0821680-mRNA-1 |
| chr5_3 | CDS | 59992600 | 59992942 | 59992600 | ID=Msa0821680-mRNA-1:cds;Parent=Msa0821680-mRNA-1 |
| chr5_3 | three_prime_UTR | 59992392 | 59992599 | 59992392 | ID=Msa0821680-mRNA-1:three_prime_utr;Parent=Msa0821680-mRNA-1 |
| chr5_3 | three_prime_UTR | 59992266 | 59992332 | 59992266 | ID=Msa0821680-mRNA-1:three_prime_utr;Parent=Msa0821680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
