AlfalfaGEDB | Msa0791820

M. sativa cultivar zhongmu-4 / Msa0791820

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791820	XP_039688270.1	93.421	152	7	1	77	225	1	152	2.38e-90	273

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0791820	-0.840461	8.575918e-58	-8.615850e-47
Msa0006040	Msa0791820	0.807296	5.418625e-50	-8.615850e-47
Msa0006880	Msa0791820	0.803445	3.474348e-49	-8.615850e-47
Msa0013050	Msa0791820	-0.829448	5.118253e-55	-8.615850e-47
Msa0023830	Msa0791820	-0.818244	2.168758e-52	-8.615850e-47
Msa0030380	Msa0791820	0.802202	6.272890e-49	-8.615850e-47
Msa0032610	Msa0791820	0.816004	6.912966e-52	-8.615850e-47
Msa0048000	Msa0791820	0.803417	3.521014e-49	-8.615850e-47
Msa0054750	Msa0791820	0.812461	4.190245e-51	-8.615850e-47
Msa0055150	Msa0791820	0.817782	2.757638e-52	-8.615850e-47

Showing 1 to 10 of 262 entries

Previous1 2 3 4 5…27Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 52 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGGAAGCAATATGTG+TGG	0.684740	5_3:+2865476	Msa0791820:CDS
AAATAAGTGATGTGTCATGT+GGG	0.637170	5_3:-2865875	None:intergenic
AAATAAGTGGGAACAAGAAT+GGG	0.494120	5_3:+2865761	Msa0791820:CDS
AACAGTGAAGAACCTGAAAA+TGG	0.369679	5_3:-2862786	None:intergenic
AAGTGGGAACAAGAATGGGA+TGG	0.602710	5_3:+2865765	Msa0791820:CDS
AATAAGTGATGTGTCATGTG+GGG	0.739169	5_3:-2865874	None:intergenic
ACAATGGTAGTTCCCTAACA+AGG	0.650300	5_3:+2865837	Msa0791820:three_prime_UTR
ACATTAATCAGAATTTGCTA+AGG	0.598746	5_3:+2865003	Msa0791820:intron
AGTGGGAACAAGAATGGGAT+GGG	0.603182	5_3:+2865766	Msa0791820:CDS
AGTTATTAGAGCATCCACAA+TGG	0.718789	5_3:+2865821	Msa0791820:three_prime_UTR

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCGAGATATATATACACTCT+TGG	+	chr5_3:2862644-2862663	Msa0791820:CDS	30.0%
AGAAAAACCTGAGTGAATAT+CGG	-	chr5_3:2862673-2862692	None:intergenic	30.0%
ATCACAACTAAGATTGAGAA+AGG	-	chr5_3:2862917-2862936	None:intergenic	30.0%
TAATTAAAAAAGGCAGTGTC+GGG	-	chr5_3:2863044-2863063	None:intergenic	30.0%
CTAATTAAAAAAGGCAGTGT+CGG	-	chr5_3:2863045-2863064	None:intergenic	30.0%
CAATTTGGTACACTGAAAAA+AGG	-	chr5_3:2863827-2863846	None:intergenic	30.0%
GTATATGAGACCTTAAAATC+TGG	+	chr5_3:2864040-2864059	Msa0791820:intron	30.0%
AGAAAGTTAGAAGAGTTACA+AGG	+	chr5_3:2864189-2864208	Msa0791820:intron	30.0%
AGGCCCATTTAACAAAATAA+AGG	+	chr5_3:2864255-2864274	Msa0791820:intron	30.0%
GAAGTTGCTAAGAAGAAAAA+AGG	+	chr5_3:2864554-2864573	Msa0791820:CDS	30.0%

Showing 1 to 10 of 211 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	2862619	2866128	2862619	ID=Msa0791820;Name=Msa0791820
chr5_3	mRNA	2862619	2866128	2862619	ID=Msa0791820-mRNA-1;Parent=Msa0791820;Name=Msa0791820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0.8\|0.66\|1\|0.6\|0.83\|6\|312\|233
chr5_3	exon	2862619	2862838	2862619	ID=Msa0791820-mRNA-1:exon:1180;Parent=Msa0791820-mRNA-1
chr5_3	exon	2863440	2863541	2863440	ID=Msa0791820-mRNA-1:exon:1181;Parent=Msa0791820-mRNA-1
chr5_3	exon	2864519	2864581	2864519	ID=Msa0791820-mRNA-1:exon:1182;Parent=Msa0791820-mRNA-1
chr5_3	exon	2865014	2865121	2865014	ID=Msa0791820-mRNA-1:exon:1183;Parent=Msa0791820-mRNA-1
chr5_3	exon	2865476	2865519	2865476	ID=Msa0791820-mRNA-1:exon:1184;Parent=Msa0791820-mRNA-1
chr5_3	exon	2865652	2866128	2865652	ID=Msa0791820-mRNA-1:exon:1185;Parent=Msa0791820-mRNA-1
chr5_3	CDS	2862619	2862838	2862619	ID=Msa0791820-mRNA-1:cds;Parent=Msa0791820-mRNA-1
chr5_3	CDS	2863440	2863541	2863440	ID=Msa0791820-mRNA-1:cds;Parent=Msa0791820-mRNA-1
chr5_3	CDS	2864519	2864581	2864519	ID=Msa0791820-mRNA-1:cds;Parent=Msa0791820-mRNA-1
chr5_3	CDS	2865014	2865121	2865014	ID=Msa0791820-mRNA-1:cds;Parent=Msa0791820-mRNA-1
chr5_3	CDS	2865476	2865519	2865476	ID=Msa0791820-mRNA-1:cds;Parent=Msa0791820-mRNA-1
chr5_3	CDS	2865652	2865816	2865652	ID=Msa0791820-mRNA-1:cds;Parent=Msa0791820-mRNA-1
chr5_3	three_prime_UTR	2865817	2866128	2865817	ID=Msa0791820-mRNA-1:three_prime_utr;Parent=Msa0791820-mRNA-1

Gene Sequence

>Msa0791820

TTGGGCCGCGTAACCCACCAATTTATCGAGATATATATACACTCTTGGTTGCCGATATTCACTCAGGTTTTTCTCTCGTATTGCGTTTCTGGTTGGTGTTGCTCTTCTTTTTCTCACCACTCGTTCTTCATGTTAGGCATGCTGTTGAATCTGAGTTTGTCTTTGTTCCATTTTCAGGTTCTTCACTGTTACACGCACATCGTTCTTCACTTTGTTCAAGAATTTGCTATGAAGCGTCGCTCAAAAAACAACAAAAACGAAGTTGCTAAGGAGCCTCATTTGACGTTAAAATCATCAATTGCTAAGATGAAAAAAGGAGAAAAATTGGCCGAGCGTCGCTCAAAAAACAGCAAAAATGAAGTTGCTAAGAAGAAAAAAGGAGAAAAATTTGCTAAGGAGCATCACTCAAAAAACATAAAAAATGATGTTCCTAAGAAGCAAAAAGTAGGGAGCACAAAGAGAAAGCCTCTTACTGAGAAGCAAAAGGAAAAAAAAATAAGGAAGCAATATGTGTGGTGGAAGATCAACCCTTGTTGTGAAAGCATTGCCGATTTTCATGGGTTGAGTATACATAGCAAGATCTCGCGTAAGAAGGTTTTACTGGTTGATAATGACGTGGCTACTGATATGGACCCAAGAGCTGATGAAATAAGTGGGAACAAGAATGGGATGGGCCTAGAAGAAGAAAAGGAAGAGCAATAA

Protein sequence

>Msa0791820

LGRVTHQFIEIYIHSWLPIFTQVFLSYCVSGWCCSSFSHHSFFMLGMLLNLSLSLFHFQVLHCYTHIVLHFVQEFAMKRRSKNNKNEVAKEPHLTLKSSIAKMKKGEKLAERRSKNSKNEVAKKKKGEKFAKEHHSKNIKNDVPKKQKVGSTKRKPLTEKQKEKKIRKQYVWWKINPCCESIADFHGLSIHSKISRKKVLLVDNDVATDMDPRADEISGNKNGMGLEEEKEEQ*