AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026150 MtrunA17_Chr1g0181141 95.160 971 26 6 1 957 1 964 0.0 1842
Msa0026150 MtrunA17_Chr1g0167361 93.100 971 39 9 1 957 1 957 0.0 1608
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026150 AT1G69070.2 49.947 939 394 15 25 949 18 894 0.0 782
Msa0026150 AT1G69070.1 50.000 936 395 15 25 949 18 891 0.0 781

Find 197 sgRNAs with CRISPR-Local

Find 501 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGATGATTTCGCCATTCT+TGG 0.167175 1_1:-49807939 None:intergenic
AAACTAAAGAAGAAAGAATT+AGG 0.178928 1_1:-49807853 None:intergenic
TTCGTTCATCACTTCCTTCT+TGG 0.196187 1_1:-49809285 None:intergenic
TCTTCACTACTGACAGTTTC+AGG 0.214470 1_1:+49814523 Msa0026150:CDS
CTGCCAGTTATATCATCTTA+TGG 0.216501 1_1:+49814398 Msa0026150:intron
TGAAGAAACTATGACTAAAA+AGG 0.225009 1_1:+49810391 Msa0026150:CDS
TGCTTTCATGGCTACTGCTT+CGG 0.243552 1_1:-49808027 None:intergenic
GATGAAGGCCTTGATGATTT+TGG 0.256994 1_1:+49808257 Msa0026150:CDS
TCCTCCAACGACTATCTTCT+TGG 0.257256 1_1:-49810789 None:intergenic
TTCAAAGCTTTCATCTTGTT+TGG 0.273827 1_1:-49809531 None:intergenic
GCAGAAGTTGATAAGGTAAA+AGG 0.285083 1_1:+49810686 Msa0026150:CDS
CTTTCAGCTCGTTCACTGTC+TGG 0.294256 1_1:-49815251 None:intergenic
GCTTTCATGGCTACTGCTTC+GGG 0.299044 1_1:-49808026 None:intergenic
TCAAGTAGTAATCTCAAAAT+TGG 0.299845 1_1:-49814923 None:intergenic
TTCGGAGCTTCAATTATATA+AGG 0.299927 1_1:-49810836 None:intergenic
AGAATACTACTTTGAAAGAT+TGG 0.304400 1_1:+49810555 Msa0026150:CDS
ATATCACGGCCAGATGTTAT+TGG 0.309858 1_1:-49812058 None:intergenic
ATCAATAAACTCGGACGATT+TGG 0.313352 1_1:-49808216 None:intergenic
GCACATATTGCAGCAAAGTA+TGG 0.315156 1_1:-49811732 None:intergenic
TTTGCAGATATTTCAGATTT+GGG 0.328110 1_1:+49808850 Msa0026150:intron
AAAGTTTGAATAAATACTAT+TGG 0.330563 1_1:-49813049 None:intergenic
TGAATAAATACTATTGGTTC+AGG 0.334462 1_1:-49813043 None:intergenic
CAAGAACATGCTTTCAAATC+TGG 0.340841 1_1:+49815434 Msa0026150:CDS
TTCTTGATGCAGCTATGTTA+AGG 0.341761 1_1:+49815214 Msa0026150:intron
TTCCCTAAAGTCACAGTAAC+AGG 0.351877 1_1:-49808946 None:intergenic
TTCAGTAATTTGATTGGAAC+TGG 0.357854 1_1:-49815073 None:intergenic
ACGTGCCAACCCCATTCTTT+TGG 0.359535 1_1:-49808138 None:intergenic
AAGCATGTTCTTGCTCTTGA+AGG 0.361044 1_1:-49815424 None:intergenic
TGACCAACTTGTCAGACAAT+TGG 0.376534 1_1:+49809745 Msa0026150:CDS
CTTCTTCTTCTTGCTGGTGG+TGG 0.378523 1_1:-49807982 None:intergenic
TTAGGATTCAGTAATTTGAT+TGG 0.384079 1_1:-49815079 None:intergenic
AAAATATGCCAAATGCATTA+CGG 0.387295 1_1:+49814960 Msa0026150:CDS
AACTAAAGAAGAAAGAATTA+GGG 0.390512 1_1:-49807852 None:intergenic
GATTTCGCCATTCTTGGGTT+TGG 0.391028 1_1:-49807933 None:intergenic
GACAATGAATAATTCTGTTC+AGG 0.394333 1_1:+49809617 Msa0026150:CDS
AGGTAAAAGGATTGAATGTT+GGG 0.395632 1_1:+49810699 Msa0026150:CDS
AGTATCACAGGAGTCATAAC+TGG 0.397195 1_1:-49812007 None:intergenic
AAGGTAAAAGGATTGAATGT+TGG 0.397569 1_1:+49810698 Msa0026150:CDS
AAAGCAAGAGCTGAGAAGTA+TGG 0.398033 1_1:+49815386 Msa0026150:CDS
AAACAAGATGAAAGCTTTGA+AGG 0.398300 1_1:+49809533 Msa0026150:CDS
GGAAGTGTAAAGGGAGATAA+TGG 0.398968 1_1:+49810755 Msa0026150:CDS
ATTACTGAATCCTAAGTTTG+AGG 0.398976 1_1:+49815087 Msa0026150:CDS
GTGAAGAATGGAGAGTCTTC+AGG 0.403043 1_1:-49814507 None:intergenic
GATTCTGTTGGAAGTGTAAA+GGG 0.404106 1_1:+49810746 Msa0026150:CDS
TCTTGATGCAGCTATGTTAA+GGG 0.406379 1_1:+49815215 Msa0026150:intron
GAATAAATGTTAAAACTTGT+GGG 0.409277 1_1:+49815499 Msa0026150:three_prime_UTR
GATCCCCACATATTATTTGA+AGG 0.409851 1_1:+49815612 Msa0026150:three_prime_UTR
TCGATGATTTCGCCATTCTT+GGG 0.414032 1_1:-49807938 None:intergenic
GATGAATTTGAAGGAATTGA+TGG 0.414203 1_1:+49808501 Msa0026150:CDS
AAATATGCCAAATGCATTAC+GGG 0.415102 1_1:+49814961 Msa0026150:CDS
TTTGAAGGAATTGATGGTCT+TGG 0.415825 1_1:+49808507 Msa0026150:CDS
TCCGTACTCATCTCTATCAA+TGG 0.415890 1_1:-49811705 None:intergenic
GAGTTTATTGATAGAAGAAT+TGG 0.416122 1_1:+49808227 Msa0026150:CDS
CGCTGTGTCTCTTGCGATTG+TGG 0.416722 1_1:+49811951 Msa0026150:CDS
AAACATCCTTGGTGTATAGA+AGG 0.417548 1_1:-49815744 None:intergenic
AGGTGAGGCGTGAAGCTAAA+GGG 0.417578 1_1:+49815291 Msa0026150:CDS
CGTAGGAAGTTCGAAGTAAT+GGG 0.419506 1_1:+49808095 Msa0026150:CDS
GAATACTACTTTGAAAGATT+GGG 0.420352 1_1:+49810556 Msa0026150:CDS
TATCACGGCCAGATGTTATT+GGG 0.421115 1_1:-49812057 None:intergenic
TCATCACCAGAGAGAGATCT+TGG 0.422739 1_1:-49810344 None:intergenic
ACAAGTTGGTCATATTCATC+TGG 0.423674 1_1:-49809734 None:intergenic
TCCTCATTAATGCGCAATAG+TGG 0.429661 1_1:-49814438 None:intergenic
AGACAATGACTTCACTTCTC+TGG 0.429681 1_1:+49809476 Msa0026150:CDS
CATAATTCTTCAAAGGTCTT+CGG 0.431108 1_1:-49810854 None:intergenic
TGAGAGAAGAGATGAGGAGG+AGG 0.431745 1_1:+49810433 Msa0026150:CDS
AGGCATTGATATATCCTTGT+AGG 0.432380 1_1:-49814865 None:intergenic
CATAACTGGATGTCTAAAAT+CGG 0.433346 1_1:-49811993 None:intergenic
GACCAACTTGTCAGACAATT+GGG 0.434843 1_1:+49809746 Msa0026150:CDS
AAGAGCTGCAGAAGTTGATA+AGG 0.435279 1_1:+49810679 Msa0026150:CDS
GACGATGATGATGAATTTGA+AGG 0.438628 1_1:+49808492 Msa0026150:CDS
AAATCTGGACAACTAGGAAA+AGG 0.438682 1_1:+49815449 Msa0026150:CDS
TCTCTCCTTCAAATAATATG+TGG 0.439934 1_1:-49815617 None:intergenic
CCAACCCATTCGAGTCAATC+TGG 0.442365 1_1:+49808069 Msa0026150:CDS
TATATCATGCGAAAATTCTC+AGG 0.447408 1_1:+49813099 Msa0026150:CDS
GATGAAAGCTTTGAAGGCTC+TGG 0.454907 1_1:+49809539 Msa0026150:CDS
AAGAGAACGTCTAGAGGAGT+TGG 0.457721 1_1:+49809832 Msa0026150:CDS
GAGATCGCAGCGCGAACGTC+AGG 0.458888 1_1:+49808292 Msa0026150:CDS
CTTGCTGGTGGTGGTTCCGT+TGG 0.462169 1_1:-49807973 None:intergenic
TGAATAAATGTTAAAACTTG+TGG 0.462448 1_1:+49815498 Msa0026150:three_prime_UTR
CTCTCCTTCAAATAATATGT+GGG 0.465901 1_1:-49815616 None:intergenic
TGATATATGTTTACTTTCAG+TGG 0.466596 1_1:-49813083 None:intergenic
TCTTAATCATCAATCGGATT+CGG 0.468845 1_1:+49810912 Msa0026150:CDS
ACTTTGAAGATGAGATGCTT+GGG 0.474875 1_1:+49808538 Msa0026150:CDS
ACGTAGGAAGTTCGAAGTAA+TGG 0.476055 1_1:+49808094 Msa0026150:CDS
AAAGGAGATACCAAAAGAAT+GGG 0.479733 1_1:+49808128 Msa0026150:CDS
AAGATAGCTTGTCTGCTAAA+CGG 0.481368 1_1:+49809595 Msa0026150:CDS
GAAAGGAGATACCAAAAGAA+TGG 0.481481 1_1:+49808127 Msa0026150:CDS
CTTTGAAGAATTATGTTCAC+TGG 0.483060 1_1:+49810862 Msa0026150:CDS
AATATTTCAACTTTAGTCAC+TGG 0.483233 1_1:+49815695 Msa0026150:three_prime_UTR
CTACTTCTTGCTTGATGTGA+AGG 0.483308 1_1:+49815340 Msa0026150:CDS
CTCAAAACCAAACCCAAGAA+TGG 0.485754 1_1:+49807926 Msa0026150:exon
ACACTATCTTAATCATCAAT+CGG 0.489425 1_1:+49810906 Msa0026150:CDS
ATCCCAATTGTCTGACAAGT+TGG 0.491655 1_1:-49809748 None:intergenic
GCAAAGAGAAATGATTCTGT+TGG 0.491781 1_1:+49810734 Msa0026150:CDS
GTAAAATGTTGGCAAACAAA+AGG 0.493052 1_1:+49815929 Msa0026150:three_prime_UTR
GGCATTGATATATCCTTGTA+GGG 0.493842 1_1:-49814864 None:intergenic
ATGCAGAGTCCAGGGGAAGC+TGG 0.497735 1_1:+49808895 Msa0026150:CDS
GAACGAGCTCAAGTTATCAT+AGG 0.499977 1_1:-49814885 None:intergenic
TCTTGAGAGAAGAGATGAGG+AGG 0.501654 1_1:+49810430 Msa0026150:CDS
GACTTTGAAGATGAGATGCT+TGG 0.502031 1_1:+49808537 Msa0026150:CDS
ATGCGTTGCCCAATAACATC+TGG 0.502843 1_1:+49812049 Msa0026150:CDS
CTGACGGTGGGGAAAATGTA+AGG 0.506509 1_1:+49808923 Msa0026150:CDS
GCCACTATTGCGCATTAATG+AGG 0.509019 1_1:+49814437 Msa0026150:CDS
GAGGTGAGGCGTGAAGCTAA+AGG 0.509324 1_1:+49815290 Msa0026150:CDS
TGGTGAAGATTCTGATGATT+CGG 0.509906 1_1:+49810478 Msa0026150:CDS
AAGCTGGTCTAGCTGACGGT+GGG 0.510032 1_1:+49808911 Msa0026150:CDS
AGGTCTGAAGATTCTGATGA+AGG 0.511371 1_1:+49810503 Msa0026150:CDS
GAGAAACCAAGATCTCTCTC+TGG 0.511990 1_1:+49810338 Msa0026150:CDS
AAATATTCATATTCTCAAGA+AGG 0.512950 1_1:-49815679 None:intergenic
GCTCATGGTATGCAGAGTCC+AGG 0.514901 1_1:+49808886 Msa0026150:CDS
TGATTCTGTTGGAAGTGTAA+AGG 0.516796 1_1:+49810745 Msa0026150:CDS
CACTTCTCTGGCTCATTCCG+AGG 0.518270 1_1:+49809488 Msa0026150:CDS
CAGATATTTCAGATTTGGGC+CGG 0.519443 1_1:+49808854 Msa0026150:intron
AATCTGGACAACTAGGAAAA+GGG 0.524082 1_1:+49815450 Msa0026150:CDS
GAAGAAGAACAACAACAAGA+TGG 0.524250 1_1:+49808001 Msa0026150:CDS
AAACTGTCAGTAGTGAAGAA+TGG 0.525835 1_1:-49814519 None:intergenic
TCAGCTAGACCAGCTTCCCC+TGG 0.526667 1_1:-49808904 None:intergenic
AAGGAATTGATGGTCTTGGA+AGG 0.527484 1_1:+49808511 Msa0026150:CDS
CACATATTGCAGCAAAGTAT+GGG 0.528243 1_1:-49811731 None:intergenic
GCGGCAGAGGGTGGTGGAGA+AGG 0.528431 1_1:-49807904 None:intergenic
GCTTTCAAATCTGGACAACT+AGG 0.529239 1_1:+49815443 Msa0026150:CDS
AACAGACACATAAACATCCT+TGG 0.529614 1_1:-49815755 None:intergenic
AGAATTGGTGAAAATGATGA+AGG 0.534823 1_1:+49808242 Msa0026150:CDS
GACAACAGAAGAGATTGCTC+AGG 0.535238 1_1:+49809805 Msa0026150:CDS
AGAACGTCTAGAGGAGTTGG+AGG 0.537126 1_1:+49809835 Msa0026150:CDS
GGCCGGCGTCATAATGCTCA+TGG 0.540640 1_1:+49808871 Msa0026150:CDS
GTGACCAGATTGACTCGAAT+GGG 0.542975 1_1:-49808073 None:intergenic
AGTCAGAGACAACAAGGCCT+CGG 0.545810 1_1:-49809505 None:intergenic
AATAAATGTTAAAACTTGTG+GGG 0.546810 1_1:+49815500 Msa0026150:three_prime_UTR
CTCATGGTATGCAGAGTCCA+GGG 0.546926 1_1:+49808887 Msa0026150:CDS
GATATCAGTGCAGGTTCAGA+AGG 0.548400 1_1:+49810599 Msa0026150:CDS
TCGCACATCAATAGTATCAC+AGG 0.550865 1_1:-49812019 None:intergenic
AGACACAGCGTCTTTGAAGA+AGG 0.550949 1_1:-49811938 None:intergenic
TGGATGAACATCATACTTTG+AGG 0.551930 1_1:+49815023 Msa0026150:CDS
GATAGTCACTTATAAAGTAA+TGG 0.554001 1_1:-49815651 None:intergenic
TCTCTCTCTGGTGATGACCT+TGG 0.559106 1_1:+49810350 Msa0026150:CDS
GATACCAAGAAGATAGTCGT+TGG 0.560935 1_1:+49810785 Msa0026150:CDS
CTATCACAGAAAGTAGCAGC+TGG 0.562254 1_1:+49811915 Msa0026150:intron
AACAGAAGAGATTGCTCAGG+AGG 0.562649 1_1:+49809808 Msa0026150:CDS
GGTTAAAGAGACTAGAACAT+CGG 0.563412 1_1:+49815583 Msa0026150:intron
TGAAGAATTATGTTCACTGG+TGG 0.563978 1_1:+49810865 Msa0026150:CDS
GGGGAAGCTGGTCTAGCTGA+CGG 0.571066 1_1:+49808907 Msa0026150:CDS
TAGCTTTACCAAAATCATCA+AGG 0.572384 1_1:-49808265 None:intergenic
ACCATTGATAGAGATGAGTA+CGG 0.573361 1_1:+49811704 Msa0026150:CDS
AGATACCAAAAGAATGGGGT+TGG 0.573911 1_1:+49808133 Msa0026150:CDS
CGTGACCAGATTGACTCGAA+TGG 0.575204 1_1:-49808074 None:intergenic
GAAGCTGGTCTAGCTGACGG+TGG 0.576068 1_1:+49808910 Msa0026150:CDS
TCTCTTGCGATTGTGGTCCA+TGG 0.576194 1_1:+49811958 Msa0026150:CDS
AAGAAGAACAACAACAAGAT+GGG 0.576229 1_1:+49808002 Msa0026150:CDS
GATTCTTGAGAGAAGAGATG+AGG 0.577765 1_1:+49810427 Msa0026150:CDS
GTTCTCTTGCTATTGAGAAG+AGG 0.577774 1_1:+49808159 Msa0026150:CDS
CAAGAGCTGAGAAGTATGGA+AGG 0.580782 1_1:+49815390 Msa0026150:CDS
ACCTCTGTTGAAACCCTACA+AGG 0.581709 1_1:+49814851 Msa0026150:CDS
ACGGGATAAAATTAAAGATG+TGG 0.582762 1_1:+49814979 Msa0026150:CDS
AGTTTCTTCATCGACAGAGA+AGG 0.583142 1_1:-49810378 None:intergenic
TTCACTCGAATCTTCAGCAG+CGG 0.584454 1_1:-49810282 None:intergenic
GGAGGAAAGAGAACGTCTAG+AGG 0.587808 1_1:+49809826 Msa0026150:CDS
GACCACGGGGAGTAAAATGT+TGG 0.589565 1_1:+49815918 Msa0026150:intron
GTTGTCTTCAGCCTATCTGA+AGG 0.592574 1_1:-49809788 None:intergenic
CAGTGAACATAATTCTTCAA+AGG 0.594264 1_1:-49810861 None:intergenic
ATCGGAACATGGAAATACCA+TGG 0.602060 1_1:-49811975 None:intergenic
AATTCTTCTATCAATAAACT+CGG 0.602106 1_1:-49808225 None:intergenic
GAAGATGATGATATCAGTGC+TGG 0.602350 1_1:+49810623 Msa0026150:CDS
TACCATGAGCATTATGACGC+CGG 0.604868 1_1:-49808873 None:intergenic
TCCTTGTAGGGTTTCAACAG+AGG 0.609177 1_1:-49814852 None:intergenic
ACCAAGAAGATAGTCGTTGG+AGG 0.610706 1_1:+49810788 Msa0026150:CDS
CATTGTCTAATCCTTCCAGC+AGG 0.611041 1_1:-49809461 None:intergenic
AAGAACCAACGGCAATATCA+CGG 0.614085 1_1:-49812072 None:intergenic
ACAGAGACATAAAACCAAGA+AGG 0.615445 1_1:+49809271 Msa0026150:intron
GATGATGATGATATCAGTGC+AGG 0.615823 1_1:+49810590 Msa0026150:CDS
AAAGATGAAGACCTGCTGGA+AGG 0.616144 1_1:+49809450 Msa0026150:CDS
GGTGAGGCGTGAAGCTAAAG+GGG 0.618945 1_1:+49815292 Msa0026150:CDS
TGGTTCAGTCAGAGACAACA+AGG 0.620464 1_1:-49809511 None:intergenic
TGCGTGCTCGTCCTTCAGAT+AGG 0.623838 1_1:+49809777 Msa0026150:CDS
AGATTCTGATGAAGGATCTG+AGG 0.625208 1_1:+49810511 Msa0026150:CDS
AGGAATTGATGGTCTTGGAA+GGG 0.625979 1_1:+49808512 Msa0026150:CDS
TCTCCTTCAAATAATATGTG+GGG 0.628876 1_1:-49815615 None:intergenic
TCGAAGTAATGGGTCAGAAG+CGG 0.631084 1_1:+49808105 Msa0026150:CDS
AGAAGATGAAGATGATGTCG+AGG 0.631134 1_1:+49810649 Msa0026150:CDS
AGCTGGTCTAGCTGACGGTG+GGG 0.637224 1_1:+49808912 Msa0026150:CDS
GAGAGAAGAGATGAGGAGGA+GGG 0.637619 1_1:+49810434 Msa0026150:CDS
GGATGTCTAAAATCGGAACA+TGG 0.639818 1_1:-49811986 None:intergenic
AAGATTCTGATGATTCGGAA+AGG 0.644071 1_1:+49810483 Msa0026150:CDS
TCGAAACGCAGCATCGCCAA+CGG 0.648466 1_1:+49807957 Msa0026150:CDS
TGAGCTGATTAAGTTGAAAG+TGG 0.649315 1_1:+49815003 Msa0026150:CDS
TGAGGCGACCACTTCAAATG+CGG 0.651913 1_1:+49815041 Msa0026150:CDS
GTAATGGGTCAGAAGCGGAA+AGG 0.654267 1_1:+49808110 Msa0026150:CDS
TCTTCTAGTGAAGATGATGA+TGG 0.654306 1_1:+49810458 Msa0026150:CDS
CCAGATTGACTCGAATGGGT+TGG 0.666324 1_1:-49808069 None:intergenic
GAAGATGATGATGAAACTGA+TGG 0.666421 1_1:+49808561 Msa0026150:CDS
CGACAGAGAAGGAATCGCCA+AGG 0.671556 1_1:-49810367 None:intergenic
TCGAGTCAATCTGGTCACGT+AGG 0.674124 1_1:+49808078 Msa0026150:CDS
TTTGAAGGAGAGAAACACAA+TGG 0.680469 1_1:+49815627 Msa0026150:three_prime_UTR
CTTTGAAGATGAGATGCTTG+GGG 0.680980 1_1:+49808539 Msa0026150:CDS
TCATGGTATGCAGAGTCCAG+GGG 0.687360 1_1:+49808888 Msa0026150:CDS
ATTCATCCTTCTATACACCA+AGG 0.700546 1_1:+49815738 Msa0026150:three_prime_UTR
AAGGAGATACCAAAAGAATG+GGG 0.729442 1_1:+49808129 Msa0026150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACTTTTGAATTTTTTAT+AGG + chr1_1:49812153-49812172 Msa0026150:intron 10.0%
!! TGATAACATAAAAAAAAAAA+AGG - chr1_1:49812741-49812760 None:intergenic 10.0%
!!! TTTAATTTTTATAGTATACA+TGG - chr1_1:49813442-49813461 None:intergenic 10.0%
!!! AAGATTTTAGAATATTAAAT+CGG + chr1_1:49813692-49813711 Msa0026150:intron 10.0%
!! TAAACATAATATTAATGATA+TGG + chr1_1:49813810-49813829 Msa0026150:intron 10.0%
!! AAAATGCAAAAATAAAGAAA+TGG - chr1_1:49807815-49807834 None:intergenic 15.0%
!!! AATTCACAAAATTATTTTCA+AGG - chr1_1:49808404-49808423 None:intergenic 15.0%
!! AAGTTAATTATCAAATTATC+AGG - chr1_1:49808690-49808709 None:intergenic 15.0%
!!! TGATAATTTGATAATTAACT+TGG + chr1_1:49808689-49808708 Msa0026150:intron 15.0%
!! TAATATAACAGTTAAAACTT+GGG - chr1_1:49811108-49811127 None:intergenic 15.0%
!! TTAATATAACAGTTAAAACT+TGG - chr1_1:49811109-49811128 None:intergenic 15.0%
!!! TGTTATATTAAACTTTTATG+TGG + chr1_1:49811118-49811137 Msa0026150:intron 15.0%
!! AATTTGAACAAAAAACTTAA+AGG - chr1_1:49812228-49812247 None:intergenic 15.0%
!!! TTTAAGTTTTTTGTTCAAAT+TGG + chr1_1:49812227-49812246 Msa0026150:intron 15.0%
!!! AGATATTTTATGACTTAAAA+AGG + chr1_1:49812638-49812657 Msa0026150:intron 15.0%
!!! TAAGTTTTTTTGTTACAAAT+TGG - chr1_1:49812665-49812684 None:intergenic 15.0%
!! TTTGTAACAAAAAAACTTAA+AGG + chr1_1:49812666-49812685 Msa0026150:intron 15.0%
!! TATAGATTTACATAAAGAAT+TGG - chr1_1:49812828-49812847 None:intergenic 15.0%
!! AAAGTTTGAATAAATACTAT+TGG - chr1_1:49813052-49813071 None:intergenic 15.0%
!! TGTTTGTATTTATTTATGTA+TGG + chr1_1:49813196-49813215 Msa0026150:intron 15.0%
!!! AGATTTTAGAATATTAAATC+GGG + chr1_1:49813693-49813712 Msa0026150:intron 15.0%
!!! TTTTTTTTTGAAGAAATAAC+CGG + chr1_1:49813728-49813747 Msa0026150:intron 15.0%
!!! ATATCTTATGTGTATTTTAA+GGG - chr1_1:49814187-49814206 None:intergenic 15.0%
!!! AATATCTTATGTGTATTTTA+AGG - chr1_1:49814188-49814207 None:intergenic 15.0%
!! AAATTGGTAAAAATATTTCT+GGG - chr1_1:49814910-49814929 None:intergenic 15.0%
!! AAAATTGGTAAAAATATTTC+TGG - chr1_1:49814911-49814930 None:intergenic 15.0%
!! AACTAAAGAAGAAAGAATTA+GGG - chr1_1:49807855-49807874 None:intergenic 20.0%
!! AAACTAAAGAAGAAAGAATT+AGG - chr1_1:49807856-49807875 None:intergenic 20.0%
!! AATTCTTCTATCAATAAACT+CGG - chr1_1:49808228-49808247 None:intergenic 20.0%
!! TACCTAATATAACATGTTAA+TGG + chr1_1:49808611-49808630 Msa0026150:intron 20.0%
!! AACCATTAACATGTTATATT+AGG - chr1_1:49808616-49808635 None:intergenic 20.0%
!! TAAAACAAACAGTATAAACA+TGG - chr1_1:49808744-49808763 None:intergenic 20.0%
!! CATTTGTGAAAAGTTTAAAA+AGG - chr1_1:49809201-49809220 None:intergenic 20.0%
!! CTTAAAAAAAGAAGATATCA+GGG - chr1_1:49809674-49809693 None:intergenic 20.0%
!! TCTTAAAAAAAGAAGATATC+AGG - chr1_1:49809675-49809694 None:intergenic 20.0%
!! ATCCATAATTTCAGAAAAAA+CGG + chr1_1:49810246-49810265 Msa0026150:intron 20.0%
!! TGATATAATCTAGTTAATAG+AGG + chr1_1:49811325-49811344 Msa0026150:intron 20.0%
!!! GTTTAATTTGAAAAAGTTCA+TGG + chr1_1:49811378-49811397 Msa0026150:intron 20.0%
!! AAGTTCCTCATAAAATATTT+AGG - chr1_1:49811539-49811558 None:intergenic 20.0%
!! AATACCTGAAAAGATAAATA+CGG - chr1_1:49811603-49811622 None:intergenic 20.0%
!!! TTATCTTTTCAGGTATTTTA+TGG + chr1_1:49811606-49811625 Msa0026150:intron 20.0%
!! ATAGTTCTTGATAAAAGTTA+AGG - chr1_1:49811851-49811870 None:intergenic 20.0%
!!! TTTTATCAAGAACTATGAAT+TGG + chr1_1:49811855-49811874 Msa0026150:intron 20.0%
!! GTAAGTAATCATGTTTAATA+AGG - chr1_1:49812390-49812409 None:intergenic 20.0%
!! GTTTGATGAAAATATGATAA+TGG + chr1_1:49812612-49812631 Msa0026150:intron 20.0%
!! GTTATAAACATCTAACTTAA+AGG + chr1_1:49812697-49812716 Msa0026150:intron 20.0%
!!! CTTTCTAAGATCTTTTTTAT+TGG + chr1_1:49812891-49812910 Msa0026150:intron 20.0%
!! AATTATTAGCACTAGTATTA+AGG - chr1_1:49813307-49813326 None:intergenic 20.0%
!!! TTTTATAGTATACATGGTAT+AGG - chr1_1:49813436-49813455 None:intergenic 20.0%
!! AGAAACTAATTACTGAAAAA+GGG + chr1_1:49813634-49813653 Msa0026150:intron 20.0%
!!! TTTTTTTTGAAGAAATAACC+GGG + chr1_1:49813729-49813748 Msa0026150:intron 20.0%
!! TGATGAATATCAAACTAATT+TGG + chr1_1:49813782-49813801 Msa0026150:intron 20.0%
!!! AGTTAATTAGGTTGTATATT+TGG - chr1_1:49814008-49814027 None:intergenic 20.0%
!!! CTTCATCCTTTTTTTTTTTA+CGG - chr1_1:49814071-49814090 None:intergenic 20.0%
!! GATATATAATATCATGCATA+TGG + chr1_1:49814310-49814329 Msa0026150:intron 20.0%
!!! TAACATTTTTCTTGCAAAAA+AGG - chr1_1:49814567-49814586 None:intergenic 20.0%
!! GCTATGATAACAAATATAAA+TGG - chr1_1:49814689-49814708 None:intergenic 20.0%
!!! AATTATGATTTTTCGATTAC+AGG + chr1_1:49814813-49814832 Msa0026150:intron 20.0%
!!! ATTATGATTTTTCGATTACA+GGG + chr1_1:49814814-49814833 Msa0026150:intron 20.0%
!! TGAATAAATGTTAAAACTTG+TGG + chr1_1:49815498-49815517 Msa0026150:three_prime_UTR 20.0%
!! GAATAAATGTTAAAACTTGT+GGG + chr1_1:49815499-49815518 Msa0026150:three_prime_UTR 20.0%
!! AATAAATGTTAAAACTTGTG+GGG + chr1_1:49815500-49815519 Msa0026150:three_prime_UTR 20.0%
!! AAATATTCATATTCTCAAGA+AGG - chr1_1:49815682-49815701 None:intergenic 20.0%
!! AGAATGTTCTCTTATATTTA+GGG - chr1_1:49815796-49815815 None:intergenic 20.0%
!! AAGAATGTTCTCTTATATTT+AGG - chr1_1:49815797-49815816 None:intergenic 20.0%
!!! AAGTCTTTTTTTAAGTTCAT+TGG - chr1_1:49815883-49815902 None:intergenic 20.0%
!!! AAGACTTTTCTCTTATATTT+AGG + chr1_1:49815896-49815915 Msa0026150:intron 20.0%
! GAGTTTATTGATAGAAGAAT+TGG + chr1_1:49808227-49808246 Msa0026150:CDS 25.0%
!! TTAATGGTTTATTTGCTGAT+TGG + chr1_1:49808627-49808646 Msa0026150:intron 25.0%
! TTTGAACTCTAATTAGCTAT+TGG + chr1_1:49808661-49808680 Msa0026150:intron 25.0%
!! TTTTGCAGATATTTCAGATT+TGG + chr1_1:49808849-49808868 Msa0026150:intron 25.0%
! TTTGCAGATATTTCAGATTT+GGG + chr1_1:49808850-49808869 Msa0026150:intron 25.0%
! TAAAGAGAAAGTTGGAATAT+AGG - chr1_1:49809702-49809721 None:intergenic 25.0%
! ATATTCCAACTTTCTCTTTA+TGG + chr1_1:49809702-49809721 Msa0026150:intron 25.0%
! TGAAGAAACTATGACTAAAA+AGG + chr1_1:49810391-49810410 Msa0026150:CDS 25.0%
! GAAGAAACTATGACTAAAAA+GGG + chr1_1:49810392-49810411 Msa0026150:CDS 25.0%
!! AGAATACTACTTTGAAAGAT+TGG + chr1_1:49810555-49810574 Msa0026150:CDS 25.0%
!! GAATACTACTTTGAAAGATT+GGG + chr1_1:49810556-49810575 Msa0026150:CDS 25.0%
! ACACTATCTTAATCATCAAT+CGG + chr1_1:49810906-49810925 Msa0026150:CDS 25.0%
!! TATTCCATTTACAATTTTGC+TGG + chr1_1:49811199-49811218 Msa0026150:intron 25.0%
! ATAATCTAGTTAATAGAGGT+TGG + chr1_1:49811329-49811348 Msa0026150:intron 25.0%
!!! AATAGACTAATTTGCTTAGT+TGG + chr1_1:49811485-49811504 Msa0026150:intron 25.0%
!! CTGTTCCTAAATATTTTATG+AGG + chr1_1:49811531-49811550 Msa0026150:intron 25.0%
!! ATAACCGTATTTATCTTTTC+AGG + chr1_1:49811596-49811615 Msa0026150:intron 25.0%
! GTTATAAACGTCTAACTTAA+AGG - chr1_1:49812197-49812216 None:intergenic 25.0%
! TGTAACAGAAAAAAACTTAC+AGG - chr1_1:49812254-49812273 None:intergenic 25.0%
!! AACAAAGTTGGTTGAAAAAT+GGG - chr1_1:49812314-49812333 None:intergenic 25.0%
!! TAACAAAGTTGGTTGAAAAA+TGG - chr1_1:49812315-49812334 None:intergenic 25.0%
! TCATGGATCATTTAACATTA+AGG + chr1_1:49812343-49812362 Msa0026150:intron 25.0%
! GATTTACATAAAGAATTGGT+AGG - chr1_1:49812824-49812843 None:intergenic 25.0%
!!! TGAATAAATACTATTGGTTC+AGG - chr1_1:49813046-49813065 None:intergenic 25.0%
! TGATATATGTTTACTTTCAG+TGG - chr1_1:49813086-49813105 None:intergenic 25.0%
!! CATTTTCTTGTATATTCTAC+TGG + chr1_1:49813368-49813387 Msa0026150:intron 25.0%
! ACTAACGAAAAAGATAAAAG+GGG - chr1_1:49813396-49813415 None:intergenic 25.0%
! CACTAACGAAAAAGATAAAA+GGG - chr1_1:49813397-49813416 None:intergenic 25.0%
! ACACTAACGAAAAAGATAAA+AGG - chr1_1:49813398-49813417 None:intergenic 25.0%
! GAGAAACTAATTACTGAAAA+AGG + chr1_1:49813633-49813652 Msa0026150:intron 25.0%
! GAAACTAATTACTGAAAAAG+GGG + chr1_1:49813635-49813654 Msa0026150:intron 25.0%
! ATATTAATGATATGGACTTC+TGG + chr1_1:49813818-49813837 Msa0026150:intron 25.0%
!!! TAATGAAACACAATTTGTTG+GGG - chr1_1:49814035-49814054 None:intergenic 25.0%
!! GTAATGAAACACAATTTGTT+GGG - chr1_1:49814036-49814055 None:intergenic 25.0%
! TGTAATGAAACACAATTTGT+TGG - chr1_1:49814037-49814056 None:intergenic 25.0%
! TGATGTCCGTAAAAAAAAAA+AGG + chr1_1:49814062-49814081 Msa0026150:intron 25.0%
!!! ACTGTTTTTCATACAATGAA+AGG - chr1_1:49814113-49814132 None:intergenic 25.0%
! TTCAAAACAACATTAAAGGT+AGG - chr1_1:49814140-49814159 None:intergenic 25.0%
! ACGTTTCAAAACAACATTAA+AGG - chr1_1:49814144-49814163 None:intergenic 25.0%
!!! AGAGTTTTTTGTGAACTTAA+AGG - chr1_1:49814230-49814249 None:intergenic 25.0%
! CATGATATTATATATCATGC+AGG - chr1_1:49814306-49814325 None:intergenic 25.0%
! CAAAAAAGGTGGTAATAAAT+TGG - chr1_1:49814553-49814572 None:intergenic 25.0%
! AGATTGACTACAAAATATCA+TGG - chr1_1:49814593-49814612 None:intergenic 25.0%
! TGATAACAAATATAAATGGC+AGG - chr1_1:49814685-49814704 None:intergenic 25.0%
! CTATGATCTTATAACTGATA+TGG + chr1_1:49814708-49814727 Msa0026150:intron 25.0%
!!! GAAATGTTTTTCAAATACTG+TGG + chr1_1:49814773-49814792 Msa0026150:intron 25.0%
! TCAAGTAGTAATCTCAAAAT+TGG - chr1_1:49814926-49814945 None:intergenic 25.0%
! AAAATATGCCAAATGCATTA+CGG + chr1_1:49814960-49814979 Msa0026150:CDS 25.0%
! TTAGGATTCAGTAATTTGAT+TGG - chr1_1:49815082-49815101 None:intergenic 25.0%
! CATATTACCAAATTGAAACA+TGG - chr1_1:49815134-49815153 None:intergenic 25.0%
! AAGAAAAAAATTGAAGAGAG+AGG + chr1_1:49815271-49815290 Msa0026150:CDS 25.0%
!!! CGTTTTTTGAATACTAATGT+TGG + chr1_1:49815562-49815581 Msa0026150:intron 25.0%
! GATAGTCACTTATAAAGTAA+TGG - chr1_1:49815654-49815673 None:intergenic 25.0%
! AATATTTCAACTTTAGTCAC+TGG + chr1_1:49815695-49815714 Msa0026150:three_prime_UTR 25.0%
!!! TAAGAGAACATTCTTTTTTC+AGG + chr1_1:49815802-49815821 Msa0026150:intron 25.0%
AAGAAGAACAACAACAAGAT+GGG + chr1_1:49808002-49808021 Msa0026150:CDS 30.0%
!! TTTTTGAGCTTTTGCTTTCA+TGG - chr1_1:49808042-49808061 None:intergenic 30.0%
AAAGGAGATACCAAAAGAAT+GGG + chr1_1:49808128-49808147 Msa0026150:CDS 30.0%
AGAATTGGTGAAAATGATGA+AGG + chr1_1:49808242-49808261 Msa0026150:CDS 30.0%
! TAGCTTTACCAAAATCATCA+AGG - chr1_1:49808268-49808287 None:intergenic 30.0%
GATGAATTTGAAGGAATTGA+TGG + chr1_1:49808501-49808520 Msa0026150:CDS 30.0%
! TTTATTTGCTGATTGGAACT+TGG + chr1_1:49808634-49808653 Msa0026150:intron 30.0%
ATTTCTGTTTCAGTGACTAT+AGG + chr1_1:49809153-49809172 Msa0026150:intron 30.0%
TTTCTGTTTCAGTGACTATA+GGG + chr1_1:49809154-49809173 Msa0026150:intron 30.0%
! TGCAAAAAGCAAGTTTTACA+AGG + chr1_1:49809313-49809332 Msa0026150:CDS 30.0%
TGTGCGATATTTCTTAAATC+AGG + chr1_1:49809336-49809355 Msa0026150:intron 30.0%
GTGCGATATTTCTTAAATCA+GGG + chr1_1:49809337-49809356 Msa0026150:intron 30.0%
! CTTTCACTCTAATATTTTCC+AGG + chr1_1:49809404-49809423 Msa0026150:intron 30.0%
TTCAAAGCTTTCATCTTGTT+TGG - chr1_1:49809534-49809553 None:intergenic 30.0%
! AAACAAGATGAAAGCTTTGA+AGG + chr1_1:49809533-49809552 Msa0026150:CDS 30.0%
GACAATGAATAATTCTGTTC+AGG + chr1_1:49809617-49809636 Msa0026150:CDS 30.0%
!!! ATGGTTTAGATGACTTGTTT+TGG + chr1_1:49809987-49810006 Msa0026150:intron 30.0%
!!! TGCCGTTTTTTCTGAAATTA+TGG - chr1_1:49810251-49810270 None:intergenic 30.0%
AAACTATGACTAAAAAGGGT+TGG + chr1_1:49810396-49810415 Msa0026150:CDS 30.0%
AACTATGACTAAAAAGGGTT+GGG + chr1_1:49810397-49810416 Msa0026150:CDS 30.0%
AAGGTAAAAGGATTGAATGT+TGG + chr1_1:49810698-49810717 Msa0026150:CDS 30.0%
AGGTAAAAGGATTGAATGTT+GGG + chr1_1:49810699-49810718 Msa0026150:CDS 30.0%
TTCGGAGCTTCAATTATATA+AGG - chr1_1:49810839-49810858 None:intergenic 30.0%
CATAATTCTTCAAAGGTCTT+CGG - chr1_1:49810857-49810876 None:intergenic 30.0%
CAGTGAACATAATTCTTCAA+AGG - chr1_1:49810864-49810883 None:intergenic 30.0%
! CTTTGAAGAATTATGTTCAC+TGG + chr1_1:49810862-49810881 Msa0026150:CDS 30.0%
TCTTAATCATCAATCGGATT+CGG + chr1_1:49810912-49810931 Msa0026150:CDS 30.0%
! CAATTTCTACAAGTCTTGTA+GGG - chr1_1:49811277-49811296 None:intergenic 30.0%
! TCAATTTCTACAAGTCTTGT+AGG - chr1_1:49811278-49811297 None:intergenic 30.0%
! TAAATCTGAGTATTGCAAAC+TGG - chr1_1:49811466-49811485 None:intergenic 30.0%
!!! ATTGCAGTATTTTGCTGTTT+TGG + chr1_1:49811635-49811654 Msa0026150:CDS 30.0%
! CATAACTGGATGTCTAAAAT+CGG - chr1_1:49811996-49812015 None:intergenic 30.0%
AGAACATAAGAAAGAACCAA+CGG - chr1_1:49812086-49812105 None:intergenic 30.0%
TGAGCACTATTTAACAAAGT+TGG - chr1_1:49812326-49812345 None:intergenic 30.0%
ACTTTGTTAAATAGTGCTCA+TGG + chr1_1:49812326-49812345 Msa0026150:intron 30.0%
TGGATCATTTAACATTAAGG+TGG + chr1_1:49812346-49812365 Msa0026150:intron 30.0%
TCATTTAACATTAAGGTGGT+AGG + chr1_1:49812350-49812369 Msa0026150:intron 30.0%
GTGGACATTTAATCTTAAGT+TGG - chr1_1:49812573-49812592 None:intergenic 30.0%
GTTATCACCATTCATCAATA+AGG + chr1_1:49812754-49812773 Msa0026150:intron 30.0%
ATCAGATCCTTATTGATGAA+TGG - chr1_1:49812764-49812783 None:intergenic 30.0%
TTATATTCATTGTGTGAGCA+AGG - chr1_1:49812989-49813008 None:intergenic 30.0%
ACACAATGAATATAAAACGC+AGG + chr1_1:49812994-49813013 Msa0026150:intron 30.0%
TATATCATGCGAAAATTCTC+AGG + chr1_1:49813099-49813118 Msa0026150:CDS 30.0%
TAAATACAAACATATGCGCA+TGG - chr1_1:49813188-49813207 None:intergenic 30.0%
AGCACTAGTATTAAGGAATT+TGG - chr1_1:49813300-49813319 None:intergenic 30.0%
ATAATTCTTGTCGAACAAAC+TGG + chr1_1:49813321-49813340 Msa0026150:intron 30.0%
! GAAAAAGAAAATGCTGCTTA+CGG + chr1_1:49813473-49813492 Msa0026150:intron 30.0%
AAAATTTCCATTAGAGACGT+AGG - chr1_1:49813607-49813626 None:intergenic 30.0%
! CTCTAATGGAAATTTTGCTA+AGG + chr1_1:49813611-49813630 Msa0026150:intron 30.0%
!!! AAATAACCGGGTTAGTTTTT+TGG + chr1_1:49813741-49813760 Msa0026150:intron 30.0%
CAAATTCCAAAAAACTAACC+CGG - chr1_1:49813750-49813769 None:intergenic 30.0%
!! AGTTGATTCAACTTTTCTTG+TGG + chr1_1:49813910-49813929 Msa0026150:intron 30.0%
TAATATTAAGTGCGAGAACT+TGG - chr1_1:49813974-49813993 None:intergenic 30.0%
TGTTGGGGTAAAAGTTAATT+AGG - chr1_1:49814020-49814039 None:intergenic 30.0%
ATTATCCAACCATAACATTC+TGG - chr1_1:49814356-49814375 None:intergenic 30.0%
GTTCCATAAGATGATATAAC+TGG - chr1_1:49814404-49814423 None:intergenic 30.0%
! CATTTTTCTTGCAAAAAAGG+TGG - chr1_1:49814564-49814583 None:intergenic 30.0%
TTGAACAAAGAAAATAGCAG+CGG + chr1_1:49814625-49814644 Msa0026150:intron 30.0%
AAATATGCCAAATGCATTAC+GGG + chr1_1:49814961-49814980 Msa0026150:CDS 30.0%
! ATTTTATCCCGTAATGCATT+TGG - chr1_1:49814971-49814990 None:intergenic 30.0%
ACGGGATAAAATTAAAGATG+TGG + chr1_1:49814979-49814998 Msa0026150:CDS 30.0%
TTCAGTAATTTGATTGGAAC+TGG - chr1_1:49815076-49815095 None:intergenic 30.0%
ATTACTGAATCCTAAGTTTG+AGG + chr1_1:49815087-49815106 Msa0026150:CDS 30.0%
!! ACTTACTTTTCCTCAAACTT+AGG - chr1_1:49815100-49815119 None:intergenic 30.0%
CCAAATTGAAACATGGAAAA+CGG - chr1_1:49815127-49815146 None:intergenic 30.0%
TTGATGTGAAGGAAAAAGAA+AGG + chr1_1:49815351-49815370 Msa0026150:CDS 30.0%
GGAAAAAGAAAGGTCTTTAA+TGG + chr1_1:49815361-49815380 Msa0026150:CDS 30.0%
TCTCCTTCAAATAATATGTG+GGG - chr1_1:49815618-49815637 None:intergenic 30.0%
CTCTCCTTCAAATAATATGT+GGG - chr1_1:49815619-49815638 None:intergenic 30.0%
TCTCTCCTTCAAATAATATG+TGG - chr1_1:49815620-49815639 None:intergenic 30.0%
! TTCTCTTATATTTAGGACCA+CGG + chr1_1:49815903-49815922 Msa0026150:intron 30.0%
GAAGAAGAACAACAACAAGA+TGG + chr1_1:49808001-49808020 Msa0026150:CDS 35.0%
GAAAGGAGATACCAAAAGAA+TGG + chr1_1:49808127-49808146 Msa0026150:CDS 35.0%
AAGGAGATACCAAAAGAATG+GGG + chr1_1:49808129-49808148 Msa0026150:CDS 35.0%
ATCAATAAACTCGGACGATT+TGG - chr1_1:49808219-49808238 None:intergenic 35.0%
! TTTTCAGAAACAGTTGTCAG+TGG - chr1_1:49808346-49808365 None:intergenic 35.0%
! GACGATGATGATGAATTTGA+AGG + chr1_1:49808492-49808511 Msa0026150:CDS 35.0%
! TTTGAAGGAATTGATGGTCT+TGG + chr1_1:49808507-49808526 Msa0026150:CDS 35.0%
! ACTTTGAAGATGAGATGCTT+GGG + chr1_1:49808538-49808557 Msa0026150:CDS 35.0%
! GAAGATGATGATGAAACTGA+TGG + chr1_1:49808561-49808580 Msa0026150:CDS 35.0%
CGTCACAAAAATAACACAAC+AGG - chr1_1:49808809-49808828 None:intergenic 35.0%
!! TAGATTACAGAAAGCACTCA+TGG - chr1_1:49808982-49809001 None:intergenic 35.0%
TCTCTCTTATGCCAATTTGA+GGG - chr1_1:49809046-49809065 None:intergenic 35.0%
TTCTCTCTTATGCCAATTTG+AGG - chr1_1:49809047-49809066 None:intergenic 35.0%
GTCACTGAAACAGAAATAAC+TGG - chr1_1:49809150-49809169 None:intergenic 35.0%
!!! TCTTGGTTTTATGTCTCTGT+AGG - chr1_1:49809271-49809290 None:intergenic 35.0%
ACAGAGACATAAAACCAAGA+AGG + chr1_1:49809271-49809290 Msa0026150:intron 35.0%
!!! TTTCTTTTGCTTTTTCAGCC+TGG - chr1_1:49809425-49809444 None:intergenic 35.0%
GGCTGAAAAAGCAAAAGAAA+AGG + chr1_1:49809425-49809444 Msa0026150:intron 35.0%
! AAGATAGCTTGTCTGCTAAA+CGG + chr1_1:49809595-49809614 Msa0026150:CDS 35.0%
GTACCATTATTTATCCTCGA+GGG + chr1_1:49809639-49809658 Msa0026150:intron 35.0%
!! ACAAGTTGGTCATATTCATC+TGG - chr1_1:49809737-49809756 None:intergenic 35.0%
GATTAACTGATCTCCAATCT+TGG + chr1_1:49809939-49809958 Msa0026150:intron 35.0%
CTCAGATATACAACCAAGAT+TGG - chr1_1:49809955-49809974 None:intergenic 35.0%
!!! ATCTGAGCTTCGTTTTAAGA+TGG + chr1_1:49809968-49809987 Msa0026150:intron 35.0%
TTTGGCCAAAGTGTATAAAC+AGG + chr1_1:49810005-49810024 Msa0026150:intron 35.0%
TTGGCCAAAGTGTATAAACA+GGG + chr1_1:49810006-49810025 Msa0026150:intron 35.0%
TCATCCCTGTTTATACACTT+TGG - chr1_1:49810013-49810032 None:intergenic 35.0%
! GCATTAAGCTAGGTAGTTTT+GGG - chr1_1:49810037-49810056 None:intergenic 35.0%
! TGCATTAAGCTAGGTAGTTT+TGG - chr1_1:49810038-49810057 None:intergenic 35.0%
AAAACTACCTAGCTTAATGC+AGG + chr1_1:49810037-49810056 Msa0026150:intron 35.0%
! TTGGTGATAGTCATGGAAAT+GGG + chr1_1:49810156-49810175 Msa0026150:intron 35.0%
! AATTTTACTCCCATGTGCAT+CGG - chr1_1:49810183-49810202 None:intergenic 35.0%
! GATCTTGGTTTCTCTTTTGA+TGG - chr1_1:49810332-49810351 None:intergenic 35.0%
TCTTCTAGTGAAGATGATGA+TGG + chr1_1:49810458-49810477 Msa0026150:CDS 35.0%
TGGTGAAGATTCTGATGATT+CGG + chr1_1:49810478-49810497 Msa0026150:CDS 35.0%
! AAGATTCTGATGATTCGGAA+AGG + chr1_1:49810483-49810502 Msa0026150:CDS 35.0%
!! GCAGAAGTTGATAAGGTAAA+AGG + chr1_1:49810686-49810705 Msa0026150:CDS 35.0%
GCAAAGAGAAATGATTCTGT+TGG + chr1_1:49810734-49810753 Msa0026150:CDS 35.0%
! TGATTCTGTTGGAAGTGTAA+AGG + chr1_1:49810745-49810764 Msa0026150:CDS 35.0%
! GATTCTGTTGGAAGTGTAAA+GGG + chr1_1:49810746-49810765 Msa0026150:CDS 35.0%
TGAAGAATTATGTTCACTGG+TGG + chr1_1:49810865-49810884 Msa0026150:CDS 35.0%
!!! TGTTTTGATCCATATCTCCT+TGG + chr1_1:49811012-49811031 Msa0026150:intron 35.0%
AAACATGAATACAAGCACCA+AGG - chr1_1:49811032-49811051 None:intergenic 35.0%
AGCACCAGCAAAATTGTAAA+TGG - chr1_1:49811206-49811225 None:intergenic 35.0%
GTGCTACAATTATTCCCTAT+AGG + chr1_1:49811221-49811240 Msa0026150:intron 35.0%
ACAGTAATCAGTCTCCTATA+GGG - chr1_1:49811238-49811257 None:intergenic 35.0%
AACAGTAATCAGTCTCCTAT+AGG - chr1_1:49811239-49811258 None:intergenic 35.0%
GTTGTCATTGATGTATTGCA+TGG + chr1_1:49811356-49811375 Msa0026150:intron 35.0%
AAAAGAATGCAAACAACCAC+AGG - chr1_1:49811433-49811452 None:intergenic 35.0%
! TGAGTATTGCAAACTGGATT+GGG - chr1_1:49811460-49811479 None:intergenic 35.0%
ACCATTGATAGAGATGAGTA+CGG + chr1_1:49811704-49811723 Msa0026150:CDS 35.0%
CACATATTGCAGCAAAGTAT+GGG - chr1_1:49811734-49811753 None:intergenic 35.0%
! GTTGAGAGTATAAAAAACGC+AGG + chr1_1:49811789-49811808 Msa0026150:CDS 35.0%
GATAAAAGTTAAGGCAGAGA+CGG - chr1_1:49811842-49811861 None:intergenic 35.0%
ATTCATCGCTCTCAAAACAA+GGG - chr1_1:49812541-49812560 None:intergenic 35.0%
AATTCATCGCTCTCAAAACA+AGG - chr1_1:49812542-49812561 None:intergenic 35.0%
!!! TGTTTTGAGAGCGATGAATT+TGG + chr1_1:49812542-49812561 Msa0026150:intron 35.0%
!! CACATGCACACTTTTTAACT+GGG + chr1_1:49812590-49812609 Msa0026150:intron 35.0%
CTACTAATGAATTTAGCCTC+TGG + chr1_1:49812862-49812881 Msa0026150:intron 35.0%
CAACGAAAAACATAGGTCAA+AGG - chr1_1:49812952-49812971 None:intergenic 35.0%
! TGACCTATGTTTTTCGTTGA+TGG + chr1_1:49812953-49812972 Msa0026150:intron 35.0%
ATGCCATCAACGAAAAACAT+AGG - chr1_1:49812959-49812978 None:intergenic 35.0%
TCATCTCATCCAACTAAGTT+TGG - chr1_1:49813259-49813278 None:intergenic 35.0%
! GCAGCATTTTCTTTTTCTAC+TGG - chr1_1:49813470-49813489 None:intergenic 35.0%
! AAAGGTGCATTGTCTTATGT+GGG + chr1_1:49813511-49813530 Msa0026150:intron 35.0%
ATTCAGCAAGCAAATCAAAG+AGG - chr1_1:49813545-49813564 None:intergenic 35.0%
!!! CGGGTTAGTTTTTTGGAATT+TGG + chr1_1:49813748-49813767 Msa0026150:intron 35.0%
CTGCCAGTTATATCATCTTA+TGG + chr1_1:49814398-49814417 Msa0026150:intron 35.0%
AAACTGTCAGTAGTGAAGAA+TGG - chr1_1:49814522-49814541 None:intergenic 35.0%
TGAACAAAGAAAATAGCAGC+GGG + chr1_1:49814626-49814645 Msa0026150:intron 35.0%
!! GGCATTGATATATCCTTGTA+GGG - chr1_1:49814867-49814886 None:intergenic 35.0%
!! AGGCATTGATATATCCTTGT+AGG - chr1_1:49814868-49814887 None:intergenic 35.0%
!! TGAGCTGATTAAGTTGAAAG+TGG + chr1_1:49815003-49815022 Msa0026150:CDS 35.0%
TGGATGAACATCATACTTTG+AGG + chr1_1:49815023-49815042 Msa0026150:CDS 35.0%
!! TTTTGTTTCCGCATTTGAAG+TGG - chr1_1:49815052-49815071 None:intergenic 35.0%
ATTGAAACATGGAAAACGGA+AGG - chr1_1:49815123-49815142 None:intergenic 35.0%
! CCGTTTTCCATGTTTCAATT+TGG + chr1_1:49815124-49815143 Msa0026150:intron 35.0%
TTCTTGATGCAGCTATGTTA+AGG + chr1_1:49815214-49815233 Msa0026150:intron 35.0%
TCTTGATGCAGCTATGTTAA+GGG + chr1_1:49815215-49815234 Msa0026150:intron 35.0%
AAAAATTGAAGAGAGAGGTG+AGG + chr1_1:49815276-49815295 Msa0026150:CDS 35.0%
CAAGAACATGCTTTCAAATC+TGG + chr1_1:49815434-49815453 Msa0026150:CDS 35.0%
AAATCTGGACAACTAGGAAA+AGG + chr1_1:49815449-49815468 Msa0026150:CDS 35.0%
AATCTGGACAACTAGGAAAA+GGG + chr1_1:49815450-49815469 Msa0026150:CDS 35.0%
GGTTAAAGAGACTAGAACAT+CGG + chr1_1:49815583-49815602 Msa0026150:intron 35.0%
GATCCCCACATATTATTTGA+AGG + chr1_1:49815612-49815631 Msa0026150:three_prime_UTR 35.0%
TTTGAAGGAGAGAAACACAA+TGG + chr1_1:49815627-49815646 Msa0026150:three_prime_UTR 35.0%
ATTCATCCTTCTATACACCA+AGG + chr1_1:49815738-49815757 Msa0026150:three_prime_UTR 35.0%
! AAACATCCTTGGTGTATAGA+AGG - chr1_1:49815747-49815766 None:intergenic 35.0%
AACAGACACATAAACATCCT+TGG - chr1_1:49815758-49815777 None:intergenic 35.0%
! TCTCTTATATTTAGGACCAC+GGG + chr1_1:49815904-49815923 Msa0026150:intron 35.0%
!!! TTCTTGGGTTTGGTTTTGAG+CGG - chr1_1:49807926-49807945 None:intergenic 40.0%
CTCAAAACCAAACCCAAGAA+TGG + chr1_1:49807926-49807945 Msa0026150:exon 40.0%
TCGATGATTTCGCCATTCTT+GGG - chr1_1:49807941-49807960 None:intergenic 40.0%
TTCGATGATTTCGCCATTCT+TGG - chr1_1:49807942-49807961 None:intergenic 40.0%
GTTCTTCTTCTTCTTCTTGC+TGG - chr1_1:49807991-49808010 None:intergenic 40.0%
ACGTAGGAAGTTCGAAGTAA+TGG + chr1_1:49808094-49808113 Msa0026150:CDS 40.0%
CGTAGGAAGTTCGAAGTAAT+GGG + chr1_1:49808095-49808114 Msa0026150:CDS 40.0%
AGATACCAAAAGAATGGGGT+TGG + chr1_1:49808133-49808152 Msa0026150:CDS 40.0%
!! GTTCTCTTGCTATTGAGAAG+AGG + chr1_1:49808159-49808178 Msa0026150:CDS 40.0%
!! GATGAAGGCCTTGATGATTT+TGG + chr1_1:49808257-49808276 Msa0026150:CDS 40.0%
! AAGGAATTGATGGTCTTGGA+AGG + chr1_1:49808511-49808530 Msa0026150:CDS 40.0%
! AGGAATTGATGGTCTTGGAA+GGG + chr1_1:49808512-49808531 Msa0026150:CDS 40.0%
! GACTTTGAAGATGAGATGCT+TGG + chr1_1:49808537-49808556 Msa0026150:CDS 40.0%
! CTTTGAAGATGAGATGCTTG+GGG + chr1_1:49808539-49808558 Msa0026150:CDS 40.0%
CAGATATTTCAGATTTGGGC+CGG + chr1_1:49808854-49808873 Msa0026150:intron 40.0%
TTCCCTAAAGTCACAGTAAC+AGG - chr1_1:49808949-49808968 None:intergenic 40.0%
CTAAACTAACCCCCTCAAAT+TGG + chr1_1:49809032-49809051 Msa0026150:intron 40.0%
TCTCTTATGCCAATTTGAGG+GGG - chr1_1:49809044-49809063 None:intergenic 40.0%
CTCTCTTATGCCAATTTGAG+GGG - chr1_1:49809045-49809064 None:intergenic 40.0%
ACTGGTAGATTAACCCACTT+GGG - chr1_1:49809132-49809151 None:intergenic 40.0%
AACTGGTAGATTAACCCACT+TGG - chr1_1:49809133-49809152 None:intergenic 40.0%
!! GCTTTGAAGCTATTTCTGAC+TGG + chr1_1:49809237-49809256 Msa0026150:intron 40.0%
TTCGTTCATCACTTCCTTCT+TGG - chr1_1:49809288-49809307 None:intergenic 40.0%
AGACAATGACTTCACTTCTC+TGG + chr1_1:49809476-49809495 Msa0026150:CDS 40.0%
GGTACCATTATTTATCCTCG+AGG + chr1_1:49809638-49809657 Msa0026150:intron 40.0%
GAACCCTCGAGGATAAATAA+TGG - chr1_1:49809645-49809664 None:intergenic 40.0%
TCCAACTTTCTCTTTATGGC+AGG + chr1_1:49809706-49809725 Msa0026150:intron 40.0%
TCCTGCCATAAAGAGAAAGT+TGG - chr1_1:49809710-49809729 None:intergenic 40.0%
TGACCAACTTGTCAGACAAT+TGG + chr1_1:49809745-49809764 Msa0026150:CDS 40.0%
GACCAACTTGTCAGACAATT+GGG + chr1_1:49809746-49809765 Msa0026150:CDS 40.0%
ATCCCAATTGTCTGACAAGT+TGG - chr1_1:49809751-49809770 None:intergenic 40.0%
CATCAATCCTGCATTAAGCT+AGG - chr1_1:49810047-49810066 None:intergenic 40.0%
TATAGTGTACTAGTGAGCCT+CGG + chr1_1:49810088-49810107 Msa0026150:intron 40.0%
! CTTGGTGATAGTCATGGAAA+TGG + chr1_1:49810155-49810174 Msa0026150:intron 40.0%
! ATTTTACTCCCATGTGCATC+GGG - chr1_1:49810182-49810201 None:intergenic 40.0%
TGCACATGGGAGTAAAATTG+TGG + chr1_1:49810184-49810203 Msa0026150:intron 40.0%
AGTTTCTTCATCGACAGAGA+AGG - chr1_1:49810381-49810400 None:intergenic 40.0%
GATTCTTGAGAGAAGAGATG+AGG + chr1_1:49810427-49810446 Msa0026150:CDS 40.0%
AGGTCTGAAGATTCTGATGA+AGG + chr1_1:49810503-49810522 Msa0026150:CDS 40.0%
AGATTCTGATGAAGGATCTG+AGG + chr1_1:49810511-49810530 Msa0026150:CDS 40.0%
! GATGATGATGATATCAGTGC+AGG + chr1_1:49810590-49810609 Msa0026150:CDS 40.0%
GAAGATGATGATATCAGTGC+TGG + chr1_1:49810623-49810642 Msa0026150:CDS 40.0%
AGAAGATGAAGATGATGTCG+AGG + chr1_1:49810649-49810668 Msa0026150:CDS 40.0%
!! AAGAGCTGCAGAAGTTGATA+AGG + chr1_1:49810679-49810698 Msa0026150:CDS 40.0%
! GGAAGTGTAAAGGGAGATAA+TGG + chr1_1:49810755-49810774 Msa0026150:CDS 40.0%
GATACCAAGAAGATAGTCGT+TGG + chr1_1:49810785-49810804 Msa0026150:CDS 40.0%
! TTTTCTGCAGCAAGTGTGAT+CGG - chr1_1:49810947-49810966 None:intergenic 40.0%
ATACAAGCACCAAGGAGATA+TGG - chr1_1:49811024-49811043 None:intergenic 40.0%
TTCTCGTGTAAAACAGTTGG+TGG - chr1_1:49811062-49811081 None:intergenic 40.0%
CACTTCTCGTGTAAAACAGT+TGG - chr1_1:49811065-49811084 None:intergenic 40.0%
! CTGAGTATTGCAAACTGGAT+TGG - chr1_1:49811461-49811480 None:intergenic 40.0%
TCCGTACTCATCTCTATCAA+TGG - chr1_1:49811708-49811727 None:intergenic 40.0%
GCACATATTGCAGCAAAGTA+TGG - chr1_1:49811735-49811754 None:intergenic 40.0%
ATCGGAACATGGAAATACCA+TGG - chr1_1:49811978-49811997 None:intergenic 40.0%
! GGATGTCTAAAATCGGAACA+TGG - chr1_1:49811989-49812008 None:intergenic 40.0%
AGTATCACAGGAGTCATAAC+TGG - chr1_1:49812010-49812029 None:intergenic 40.0%
TCGCACATCAATAGTATCAC+AGG - chr1_1:49812022-49812041 None:intergenic 40.0%
TATCACGGCCAGATGTTATT+GGG - chr1_1:49812060-49812079 None:intergenic 40.0%
ATATCACGGCCAGATGTTAT+TGG - chr1_1:49812061-49812080 None:intergenic 40.0%
AAGAACCAACGGCAATATCA+CGG - chr1_1:49812075-49812094 None:intergenic 40.0%
TATAGGCCAAATATCTTCCG+CGG + chr1_1:49812170-49812189 Msa0026150:intron 40.0%
CTCTCAAAACAAGGGTTCAT+AGG - chr1_1:49812533-49812552 None:intergenic 40.0%
! CCAGTTAAAAAGTGTGCATG+TGG - chr1_1:49812592-49812611 None:intergenic 40.0%
!! CCACATGCACACTTTTTAAC+TGG + chr1_1:49812589-49812608 Msa0026150:intron 40.0%
CTAACTTAAAGGACTGCAGA+TGG + chr1_1:49812708-49812727 Msa0026150:intron 40.0%
AAAGGACTGCAGATGGTATT+TGG + chr1_1:49812715-49812734 Msa0026150:intron 40.0%
TAGCGTCTTCCAAACTTAGT+TGG + chr1_1:49813247-49813266 Msa0026150:intron 40.0%
GCTTACGGAAGCAAATAATG+AGG + chr1_1:49813488-49813507 Msa0026150:intron 40.0%
CGGAAGCAAATAATGAGGAA+AGG + chr1_1:49813493-49813512 Msa0026150:intron 40.0%
! GAAAGGTGCATTGTCTTATG+TGG + chr1_1:49813510-49813529 Msa0026150:intron 40.0%
AAGCAGAGATCAGGTAGTAA+GGG - chr1_1:49813582-49813601 None:intergenic 40.0%
TAAGCAGAGATCAGGTAGTA+AGG - chr1_1:49813583-49813602 None:intergenic 40.0%
TGCTTAACCTACGTCTCTAA+TGG + chr1_1:49813597-49813616 Msa0026150:intron 40.0%
TTACTGAAAAAGGGGATCAG+AGG + chr1_1:49813643-49813662 Msa0026150:intron 40.0%
AGGCTGTGCAAGGTTTAAAT+GGG + chr1_1:49813667-49813686 Msa0026150:intron 40.0%
TCTTCGCTTTCTTGTGTTTG+AGG + chr1_1:49814247-49814266 Msa0026150:intron 40.0%
TATCATGCAGGAACTAGCTA+AGG - chr1_1:49814294-49814313 None:intergenic 40.0%
!! TATGGTGCTGTACTTCATGA+TGG + chr1_1:49814328-49814347 Msa0026150:intron 40.0%
ATGATGGCACCAGAATGTTA+TGG + chr1_1:49814344-49814363 Msa0026150:intron 40.0%
CTGGCAGAAAACAAGCAATA+TGG - chr1_1:49814385-49814404 None:intergenic 40.0%
TCCTCATTAATGCGCAATAG+TGG - chr1_1:49814441-49814460 None:intergenic 40.0%
TCTTCACTACTGACAGTTTC+AGG + chr1_1:49814523-49814542 Msa0026150:CDS 40.0%
GAACAAAGAAAATAGCAGCG+GGG + chr1_1:49814627-49814646 Msa0026150:intron 40.0%
TATGGATGCAGCTAATGTTG+AGG + chr1_1:49814726-49814745 Msa0026150:intron 40.0%
GAACGAGCTCAAGTTATCAT+AGG - chr1_1:49814888-49814907 None:intergenic 40.0%
TTAGCCAGTCAGATCAGAAA+GGG + chr1_1:49815159-49815178 Msa0026150:intron 40.0%
CTACTTCTTGCTTGATGTGA+AGG + chr1_1:49815340-49815359 Msa0026150:CDS 40.0%
AAAGCAAGAGCTGAGAAGTA+TGG + chr1_1:49815386-49815405 Msa0026150:CDS 40.0%
AAGCATGTTCTTGCTCTTGA+AGG - chr1_1:49815427-49815446 None:intergenic 40.0%
GCTTTCAAATCTGGACAACT+AGG + chr1_1:49815443-49815462 Msa0026150:CDS 40.0%
! CTCTTATATTTAGGGCCAGA+GGG - chr1_1:49815788-49815807 None:intergenic 40.0%
! TCTCTTATATTTAGGGCCAG+AGG - chr1_1:49815789-49815808 None:intergenic 40.0%
! CTCTTATATTTAGGACCACG+GGG + chr1_1:49815905-49815924 Msa0026150:intron 40.0%
GATTTCGCCATTCTTGGGTT+TGG - chr1_1:49807936-49807955 None:intergenic 45.0%
CTTCTTCTTCTTCTTGCTGG+TGG - chr1_1:49807988-49808007 None:intergenic 45.0%
TGCTTTCATGGCTACTGCTT+CGG - chr1_1:49808030-49808049 None:intergenic 45.0%
!! GTGACCAGATTGACTCGAAT+GGG - chr1_1:49808076-49808095 None:intergenic 45.0%
!! TCGAAGTAATGGGTCAGAAG+CGG + chr1_1:49808105-49808124 Msa0026150:CDS 45.0%
TACCATGAGCATTATGACGC+CGG - chr1_1:49808876-49808895 None:intergenic 45.0%
AGGCCTGTTACTGTGACTTT+AGG + chr1_1:49808943-49808962 Msa0026150:intron 45.0%
GGCCTGTTACTGTGACTTTA+GGG + chr1_1:49808944-49808963 Msa0026150:intron 45.0%
GAATCGAACCTAAGACCTTG+AGG + chr1_1:49809064-49809083 Msa0026150:intron 45.0%
GTAGATTAACCCACTTGGGT+TGG - chr1_1:49809128-49809147 None:intergenic 45.0%
GGAAAAAGATGAAGACCTGC+TGG + chr1_1:49809446-49809465 Msa0026150:CDS 45.0%
AAAGATGAAGACCTGCTGGA+AGG + chr1_1:49809450-49809469 Msa0026150:CDS 45.0%
CATTGTCTAATCCTTCCAGC+AGG - chr1_1:49809464-49809483 None:intergenic 45.0%
TGGTTCAGTCAGAGACAACA+AGG - chr1_1:49809514-49809533 None:intergenic 45.0%
!! GATGAAAGCTTTGAAGGCTC+TGG + chr1_1:49809539-49809558 Msa0026150:CDS 45.0%
GTTGTCTTCAGCCTATCTGA+AGG - chr1_1:49809791-49809810 None:intergenic 45.0%
GACAACAGAAGAGATTGCTC+AGG + chr1_1:49809805-49809824 Msa0026150:CDS 45.0%
AACAGAAGAGATTGCTCAGG+AGG + chr1_1:49809808-49809827 Msa0026150:CDS 45.0%
AAGAGAACGTCTAGAGGAGT+TGG + chr1_1:49809832-49809851 Msa0026150:CDS 45.0%
GCCAACAATCTTGCAAGTGA+CGG - chr1_1:49810119-49810138 None:intergenic 45.0%
!! ATTGTTGGCTTGTAACCCTG+TGG + chr1_1:49810130-49810149 Msa0026150:intron 45.0%
GACTATCACCAAGATCCACA+GGG - chr1_1:49810148-49810167 None:intergenic 45.0%
TGACTATCACCAAGATCCAC+AGG - chr1_1:49810149-49810168 None:intergenic 45.0%
! GTGGATCTTGGTGATAGTCA+TGG + chr1_1:49810149-49810168 Msa0026150:intron 45.0%
TTCACTCGAATCTTCAGCAG+CGG - chr1_1:49810285-49810304 None:intergenic 45.0%
GAGAAACCAAGATCTCTCTC+TGG + chr1_1:49810338-49810357 Msa0026150:CDS 45.0%
TCATCACCAGAGAGAGATCT+TGG - chr1_1:49810347-49810366 None:intergenic 45.0%
TCTTGAGAGAAGAGATGAGG+AGG + chr1_1:49810430-49810449 Msa0026150:CDS 45.0%
GATATCAGTGCAGGTTCAGA+AGG + chr1_1:49810599-49810618 Msa0026150:CDS 45.0%
ACCAAGAAGATAGTCGTTGG+AGG + chr1_1:49810788-49810807 Msa0026150:CDS 45.0%
TCCTCCAACGACTATCTTCT+TGG - chr1_1:49810792-49810811 None:intergenic 45.0%
! ACACGAGAAGTGTGATCTCT+TGG + chr1_1:49811073-49811092 Msa0026150:intron 45.0%
! TACAAGTCTTGTAGGGCAGA+AGG - chr1_1:49811270-49811289 None:intergenic 45.0%
CTATCACAGAAAGTAGCAGC+TGG + chr1_1:49811915-49811934 Msa0026150:intron 45.0%
! AGACACAGCGTCTTTGAAGA+AGG - chr1_1:49811941-49811960 None:intergenic 45.0%
ATGCGTTGCCCAATAACATC+TGG + chr1_1:49812049-49812068 Msa0026150:CDS 45.0%
! AGAAAGTAACTTGCCACACG+AGG - chr1_1:49812128-49812147 None:intergenic 45.0%
AAAGGACCGCGGAAGATATT+TGG - chr1_1:49812179-49812198 None:intergenic 45.0%
ACGTCTAACTTAAAGGACCG+CGG - chr1_1:49812190-49812209 None:intergenic 45.0%
! TCTTAGAAAGCACAGACCAG+AGG - chr1_1:49812881-49812900 None:intergenic 45.0%
AGACGCTAACACACAAGATG+AGG - chr1_1:49813235-49813254 None:intergenic 45.0%
!! TCGAACAAACTGGTGTTGCT+TGG + chr1_1:49813331-49813350 Msa0026150:intron 45.0%
AGCAGAGATCAGGTAGTAAG+GGG - chr1_1:49813581-49813600 None:intergenic 45.0%
ACGTAGGTTAAGCAGAGATC+AGG - chr1_1:49813591-49813610 None:intergenic 45.0%
CAGGCTGTGCAAGGTTTAAA+TGG + chr1_1:49813666-49813685 Msa0026150:intron 45.0%
TGGCACCAGAATGTTATGGT+TGG + chr1_1:49814348-49814367 Msa0026150:intron 45.0%
GCCACTATTGCGCATTAATG+AGG + chr1_1:49814437-49814456 Msa0026150:CDS 45.0%
GTGAAGAATGGAGAGTCTTC+AGG - chr1_1:49814510-49814529 None:intergenic 45.0%
ACCTCTGTTGAAACCCTACA+AGG + chr1_1:49814851-49814870 Msa0026150:CDS 45.0%
TCCTTGTAGGGTTTCAACAG+AGG - chr1_1:49814855-49814874 None:intergenic 45.0%
CTTAGCCAGTCAGATCAGAA+AGG + chr1_1:49815158-49815177 Msa0026150:intron 45.0%
AGTTCCCTTTCTGATCTGAC+TGG - chr1_1:49815166-49815185 None:intergenic 45.0%
! CAAGAGCTGAGAAGTATGGA+AGG + chr1_1:49815390-49815409 Msa0026150:CDS 45.0%
TGTCTGTTAAGTACTCCCTC+TGG + chr1_1:49815770-49815789 Msa0026150:intron 45.0%
!! AAAAAAAAAAAAAAAATAAC+TGG - chr1_1:49809005-49809024 None:intergenic 5.0%
!!! GTTTGGTTTTGAGCGGCAGA+GGG - chr1_1:49807919-49807938 None:intergenic 50.0%
CTTCTTCTTCTTGCTGGTGG+TGG - chr1_1:49807985-49808004 None:intergenic 50.0%
GCTTTCATGGCTACTGCTTC+GGG - chr1_1:49808029-49808048 None:intergenic 50.0%
!! CCAGATTGACTCGAATGGGT+TGG - chr1_1:49808072-49808091 None:intergenic 50.0%
CCAACCCATTCGAGTCAATC+TGG + chr1_1:49808069-49808088 Msa0026150:CDS 50.0%
!! CGTGACCAGATTGACTCGAA+TGG - chr1_1:49808077-49808096 None:intergenic 50.0%
TCGAGTCAATCTGGTCACGT+AGG + chr1_1:49808078-49808097 Msa0026150:CDS 50.0%
!! GTAATGGGTCAGAAGCGGAA+AGG + chr1_1:49808110-49808129 Msa0026150:CDS 50.0%
! ACGTGCCAACCCCATTCTTT+TGG - chr1_1:49808141-49808160 None:intergenic 50.0%
CTCATGGTATGCAGAGTCCA+GGG + chr1_1:49808887-49808906 Msa0026150:CDS 50.0%
TCATGGTATGCAGAGTCCAG+GGG + chr1_1:49808888-49808907 Msa0026150:CDS 50.0%
CTGACGGTGGGGAAAATGTA+AGG + chr1_1:49808923-49808942 Msa0026150:CDS 50.0%
TCGAACCTAAGACCTTGAGG+AGG + chr1_1:49809067-49809086 Msa0026150:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - chr1_1:49809108-49809127 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - chr1_1:49809109-49809128 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - chr1_1:49809114-49809133 None:intergenic 50.0%
AGTCAGAGACAACAAGGCCT+CGG - chr1_1:49809508-49809527 None:intergenic 50.0%
GGAGGAAAGAGAACGTCTAG+AGG + chr1_1:49809826-49809845 Msa0026150:CDS 50.0%
AGAACGTCTAGAGGAGTTGG+AGG + chr1_1:49809835-49809854 Msa0026150:CDS 50.0%
GCCGTCACTTGCAAGATTGT+TGG + chr1_1:49810115-49810134 Msa0026150:intron 50.0%
GCTTGTAACCCTGTGGATCT+TGG + chr1_1:49810137-49810156 Msa0026150:intron 50.0%
! TCTCTCTCTGGTGATGACCT+TGG + chr1_1:49810350-49810369 Msa0026150:CDS 50.0%
TGAGAGAAGAGATGAGGAGG+AGG + chr1_1:49810433-49810452 Msa0026150:CDS 50.0%
GAGAGAAGAGATGAGGAGGA+GGG + chr1_1:49810434-49810453 Msa0026150:CDS 50.0%
! ATGTAGAAAGCACGTGCCTG+TGG + chr1_1:49811414-49811433 Msa0026150:intron 50.0%
TCTCTTGCGATTGTGGTCCA+TGG + chr1_1:49811958-49811977 Msa0026150:CDS 50.0%
CTCTCTGTAAGTACCTCGTG+TGG + chr1_1:49812112-49812131 Msa0026150:intron 50.0%
CGCTAACACACAAGATGAGG+AGG - chr1_1:49813232-49813251 None:intergenic 50.0%
TGAAAAAGGGGATCAGAGGC+AGG + chr1_1:49813647-49813666 Msa0026150:intron 50.0%
TGAGGCGACCACTTCAAATG+CGG + chr1_1:49815041-49815060 Msa0026150:CDS 50.0%
CTTTCAGCTCGTTCACTGTC+TGG - chr1_1:49815254-49815273 None:intergenic 50.0%
AGGTGAGGCGTGAAGCTAAA+GGG + chr1_1:49815291-49815310 Msa0026150:CDS 50.0%
GACCACGGGGAGTAAAATGT+TGG + chr1_1:49815918-49815937 Msa0026150:intron 50.0%
! TGCCAACATTTTACTCCCCG+TGG - chr1_1:49815923-49815942 None:intergenic 50.0%
!!! GGTTTGGTTTTGAGCGGCAG+AGG - chr1_1:49807920-49807939 None:intergenic 55.0%
TCGAAACGCAGCATCGCCAA+CGG + chr1_1:49807957-49807976 Msa0026150:CDS 55.0%
GCTCATGGTATGCAGAGTCC+AGG + chr1_1:49808886-49808905 Msa0026150:CDS 55.0%
! AAGCTGGTCTAGCTGACGGT+GGG + chr1_1:49808911-49808930 Msa0026150:CDS 55.0%
GTGCTCCTCCTCAAGGTCTT+AGG - chr1_1:49809075-49809094 None:intergenic 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG - chr1_1:49809101-49809120 None:intergenic 55.0%
!! AGTGGTATTGGCTTGGGACC+TGG - chr1_1:49809102-49809121 None:intergenic 55.0%
GGTCCCAAGCCAATACCACT+AGG + chr1_1:49809102-49809121 Msa0026150:intron 55.0%
TACCACTAGGCCAACCCAAG+TGG + chr1_1:49809115-49809134 Msa0026150:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + chr1_1:49809116-49809135 Msa0026150:intron 55.0%
! CACTTCTCTGGCTCATTCCG+AGG + chr1_1:49809488-49809507 Msa0026150:CDS 55.0%
TGCGTGCTCGTCCTTCAGAT+AGG + chr1_1:49809777-49809796 Msa0026150:CDS 55.0%
GAAATGGGCCCGATGCACAT+GGG + chr1_1:49810171-49810190 Msa0026150:intron 55.0%
CGACAGAGAAGGAATCGCCA+AGG - chr1_1:49810370-49810389 None:intergenic 55.0%
CGCTGTGTCTCTTGCGATTG+TGG + chr1_1:49811951-49811970 Msa0026150:CDS 55.0%
TCTGGCCGTGATATTGCCGT+TGG + chr1_1:49812067-49812086 Msa0026150:intron 55.0%
GAGGTGAGGCGTGAAGCTAA+AGG + chr1_1:49815290-49815309 Msa0026150:CDS 55.0%
GGTGAGGCGTGAAGCTAAAG+GGG + chr1_1:49815292-49815311 Msa0026150:CDS 55.0%
! TTTTGAGCGGCAGAGGGTGG+TGG - chr1_1:49807913-49807932 None:intergenic 60.0%
!!! TGGTTTTGAGCGGCAGAGGG+TGG - chr1_1:49807916-49807935 None:intergenic 60.0%
!! CTTGCTGGTGGTGGTTCCGT+TGG - chr1_1:49807976-49807995 None:intergenic 60.0%
GGCCGGCGTCATAATGCTCA+TGG + chr1_1:49808871-49808890 Msa0026150:CDS 60.0%
ATGCAGAGTCCAGGGGAAGC+TGG + chr1_1:49808895-49808914 Msa0026150:CDS 60.0%
TCAGCTAGACCAGCTTCCCC+TGG - chr1_1:49808907-49808926 None:intergenic 60.0%
! GGGGAAGCTGGTCTAGCTGA+CGG + chr1_1:49808907-49808926 Msa0026150:CDS 60.0%
! GAAGCTGGTCTAGCTGACGG+TGG + chr1_1:49808910-49808929 Msa0026150:CDS 60.0%
! AGCTGGTCTAGCTGACGGTG+GGG + chr1_1:49808912-49808931 Msa0026150:CDS 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG - chr1_1:49809082-49809101 None:intergenic 60.0%
! TTGAGGAGGAGCACACTCCC+AGG + chr1_1:49809081-49809100 Msa0026150:intron 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - chr1_1:49809120-49809139 None:intergenic 60.0%
CAGGGCAAGAAGAACCCTCG+AGG - chr1_1:49809656-49809675 None:intergenic 60.0%
TGCAAGTGACGGCATTGCCG+AGG - chr1_1:49810108-49810127 None:intergenic 60.0%
GGAAATGGGCCCGATGCACA+TGG + chr1_1:49810170-49810189 Msa0026150:intron 60.0%
GATCAGAGGCAGGCTGTGCA+AGG + chr1_1:49813657-49813676 Msa0026150:intron 60.0%
GAGATCGCAGCGCGAACGTC+AGG + chr1_1:49808292-49808311 Msa0026150:CDS 65.0%
!! GCGGCAGAGGGTGGTGGAGA+AGG - chr1_1:49807907-49807926 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49807806 49815950 49807806 ID=Msa0026150;Name=Msa0026150
chr1_1 mRNA 49807806 49815950 49807806 ID=Msa0026150-mRNA-1;Parent=Msa0026150;Name=Msa0026150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=139|0.85|0.86|1|0.71|0.73|15|289|957
chr1_1 exon 49807806 49808313 49807806 ID=Msa0026150-mRNA-1:exon:14381;Parent=Msa0026150-mRNA-1
chr1_1 exon 49808444 49808582 49808444 ID=Msa0026150-mRNA-1:exon:14382;Parent=Msa0026150-mRNA-1
chr1_1 exon 49808857 49808954 49808857 ID=Msa0026150-mRNA-1:exon:14383;Parent=Msa0026150-mRNA-1
chr1_1 exon 49809275 49809334 49809275 ID=Msa0026150-mRNA-1:exon:14384;Parent=Msa0026150-mRNA-1
chr1_1 exon 49809426 49809638 49809426 ID=Msa0026150-mRNA-1:exon:14385;Parent=Msa0026150-mRNA-1
chr1_1 exon 49809728 49809856 49809728 ID=Msa0026150-mRNA-1:exon:14386;Parent=Msa0026150-mRNA-1
chr1_1 exon 49810260 49810982 49810260 ID=Msa0026150-mRNA-1:exon:14387;Parent=Msa0026150-mRNA-1
chr1_1 exon 49811618 49811810 49811618 ID=Msa0026150-mRNA-1:exon:14388;Parent=Msa0026150-mRNA-1
chr1_1 exon 49811924 49812084 49811924 ID=Msa0026150-mRNA-1:exon:14389;Parent=Msa0026150-mRNA-1
chr1_1 exon 49813016 49813120 49813016 ID=Msa0026150-mRNA-1:exon:14390;Parent=Msa0026150-mRNA-1
chr1_1 exon 49814405 49814544 49814405 ID=Msa0026150-mRNA-1:exon:14391;Parent=Msa0026150-mRNA-1
chr1_1 exon 49814835 49815113 49814835 ID=Msa0026150-mRNA-1:exon:14392;Parent=Msa0026150-mRNA-1
chr1_1 exon 49815226 49815570 49815226 ID=Msa0026150-mRNA-1:exon:14393;Parent=Msa0026150-mRNA-1
chr1_1 exon 49815593 49815779 49815593 ID=Msa0026150-mRNA-1:exon:14394;Parent=Msa0026150-mRNA-1
chr1_1 exon 49815929 49815950 49815929 ID=Msa0026150-mRNA-1:exon:14395;Parent=Msa0026150-mRNA-1
chr1_1 five_prime_UTR 49807806 49807944 49807806 ID=Msa0026150-mRNA-1:five_prime_utr;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49807945 49808313 49807945 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49808444 49808582 49808444 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49808857 49808954 49808857 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49809275 49809334 49809275 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49809426 49809638 49809426 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49809728 49809856 49809728 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49810260 49810982 49810260 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49811618 49811810 49811618 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49811924 49812084 49811924 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49813016 49813120 49813016 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49814405 49814544 49814405 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49814835 49815113 49814835 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 CDS 49815226 49815490 49815226 ID=Msa0026150-mRNA-1:cds;Parent=Msa0026150-mRNA-1
chr1_1 three_prime_UTR 49815491 49815570 49815491 ID=Msa0026150-mRNA-1:three_prime_utr;Parent=Msa0026150-mRNA-1
chr1_1 three_prime_UTR 49815593 49815779 49815593 ID=Msa0026150-mRNA-1:three_prime_utr;Parent=Msa0026150-mRNA-1
chr1_1 three_prime_UTR 49815929 49815950 49815929 ID=Msa0026150-mRNA-1:three_prime_utr;Parent=Msa0026150-mRNA-1
Gene Sequence

>Msa0026150

ATGGCGAAATCATCGAAACGCAGCATCGCCAACGGAACCACCACCAGCAAGAAGAAGAAGAAGAACAACAACAAGATGGGTCCCGAAGCAGTAGCCATGAAAGCAAAAGCTCAAAAAACAAACACCAACCCATTCGAGTCAATCTGGTCACGTAGGAAGTTCGAAGTAATGGGTCAGAAGCGGAAAGGAGATACCAAAAGAATGGGGTTGGCACGTTCTCTTGCTATTGAGAAGAGGAAGAAGACGTTGCTTAAAGAGTATGAGCAGAGTACCAAATCGTCCGAGTTTATTGATAGAAGAATTGGTGAAAATGATGAAGGCCTTGATGATTTTGGTAAAGCTATTTTGAGATCGCAGCGCGAACGTCAGTTGAATGTGAAATCGAGTAAGAAAAGCAAGTATCACTTGTCAGAAGAAGACGATGATGATGAATTTGAAGGAATTGATGGTCTTGGAAGGGATGACTTTGAAGATGAGATGCTTGGGGAAGATGATGATGAAACTGATGATATTTCAGATTTGGGCCGGCGTCATAATGCTCATGGTATGCAGAGTCCAGGGGAAGCTGGTCTAGCTGACGGTGGGGAAAATGTAAGGCCTGTTACTAGACATAAAACCAAGAAGGAAGTGATGAACGAAGTTATTGCAAAAAGCAAGTTTTACAAGGCTGAAAAAGCAAAAGAAAAGGAAAAAGATGAAGACCTGCTGGAAGGATTAGACAATGACTTCACTTCTCTGGCTCATTCCGAGGCCTTGTTGTCTCTGACTGAACCAAACAAGATGAAAGCTTTGAAGGCTCTGGTGAACAGTAGTATTTCAAATGAAAAAAGTGATAAAGATAGCTTGTCTGCTAAACGGACAATGAATAATTCTGTTCAGGAAAAGCCAGATGAATATGACCAACTTGTCAGACAATTGGGATTTGAAATGCGTGCTCGTCCTTCAGATAGGCTGAAGACAACAGAAGAGATTGCTCAGGAGGAAAGAGAACGTCTAGAGGAGTTGGAGAAAAAACGGCAGAAGAGAATGACCGCTGCTGAAGATTCGAGTGAAGAAGACGATGAAGAATCAGAAAAGCCATCAAAAGAGAAACCAAGATCTCTCTCTGGTGATGACCTTGGCGATTCCTTCTCTGTCGATGAAGAAACTATGACTAAAAAGGGTTGGGTTGATGAGATTCTTGAGAGAAGAGATGAGGAGGAGGGTTCTTCTAGTGAAGATGATGATGGTGAAGATTCTGATGATTCGGAAAGGTCTGAAGATTCTGATGAAGGATCTGAGGATGATCTTGATGAAAACGATAAGAATACTACTTTGAAAGATTGGGAACAGAGTGATGATGATGATGATATCAGTGCAGGTTCAGAAGGTGAAGATGATGATATCAGTGCTGGTTCAGAAGATGAAGATGATGTCGAGGACGAAGAAAGAGCTGCAGAAGTTGATAAGGTAAAAGGATTGAATGTTGGGATTCACAAAAAAGCAAAGAGAAATGATTCTGTTGGAAGTGTAAAGGGAGATAATGGTTCTTTAGATACCAAGAAGATAGTCGTTGGAGGAAAAATGTCGAAAGAGTTAGAGATTCCTTATATAATTGAAGCTCCGAAGACCTTTGAAGAATTATGTTCACTGGTGGATAAACGTTCAAATTCTGACACTATCTTAATCATCAATCGGATTCGGAAAAGCAATCCGATCACACTTGCTGCAGAAAATCGAAAGAAAGTACAAGTATTTTATGGAGTATTATTGCAGTATTTTGCTGTTTTGGCAAATAAGAAAACGTTGAACGTTGAATTGATTAACATGCTAGTGAAACCATTGATAGAGATGAGTACGGAAATCCCATACTTTGCTGCAATATGTGCTCGTCGCAGAATAGAAATCACTAGAAAGCAATTTGTTGAGAGTATAAAAAACGCAGAAAGTAGCAGCTGGCCTTCTTCAAAGACGCTGTGTCTCTTGCGATTGTGGTCCATGGTATTTCCATGTTCCGATTTTAGACATCCAGTTATGACTCCTGTGATACTATTGATGTGCGAATATCTGATGCGTTGCCCAATAACATCTGGCCGTGATATTGCCGTATTTAAACAGTCACGAAAGTTCTGTCCTGAACCAATAGTATTTATTCAAACTTTGCTGCTAGCAACCACTGAAAGTAAACATATATCATGCGAAAATTCTCAGTTATATCATCTTATGGAACTGAAAGATCTCAAGCCACTATTGCGCATTAATGAGGAAGTAGACAAGATTAGCGCTTTGAATTTCTTTAAGTTAATAGACATGCCTGAAGACTCTCCATTCTTCACTACTGACAGTTTCAGGGCTAGTGTATTAGTTACCTCTGTTGAAACCCTACAAGGATATATCAATGCCTATGATAACTTGAGCTCGTTCCCAGAAATATTTTTACCAATTTTGAGATTACTACTTGAGATAGCTGAACAGAAAAATATGCCAAATGCATTACGGGATAAAATTAAAGATGTGGCTGAGCTGATTAAGTTGAAAGTGGATGAACATCATACTTTGAGGCGACCACTTCAAATGCGGAAACAAAAGCCAGTTCCAATCAAATTACTGAATCCTAAGTTTGAGGAAAACTATGTTAAGGGTAGAGATTATGATCCAGACAGTGAACGAGCTGAAAGAAAAAAATTGAAGAGAGAGGTGAGGCGTGAAGCTAAAGGGGCTGCTCGTGAAATACGTAAAGACAACTACTTCTTGCTTGATGTGAAGGAAAAAGAAAGGTCTTTAATGGAGAAAGCAAGAGCTGAGAAGTATGGAAGGACTAAAGCTTTCCTTCAAGAGCAAGAACATGCTTTCAAATCTGGACAACTAGGAAAAGGGAAGAAGAGAAGTAGATAA
Protein sequence

>Msa0026150

MAKSSKRSIANGTTTSKKKKKNNNKMGPEAVAMKAKAQKTNTNPFESIWSRRKFEVMGQKRKGDTKRMGLARSLAIEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKKSKYHLSEEDDDDEFEGIDGLGRDDFEDEMLGEDDDETDDISDLGRRHNAHGMQSPGEAGLADGGENVRPVTRHKTKKEVMNEVIAKSKFYKAEKAKEKEKDEDLLEGLDNDFTSLAHSEALLSLTEPNKMKALKALVNSSISNEKSDKDSLSAKRTMNNSVQEKPDEYDQLVRQLGFEMRARPSDRLKTTEEIAQEERERLEELEKKRQKRMTAAEDSSEEDDEESEKPSKEKPRSLSGDDLGDSFSVDEETMTKKGWVDEILERRDEEEGSSSEDDDGEDSDDSERSEDSDEGSEDDLDENDKNTTLKDWEQSDDDDDISAGSEGEDDDISAGSEDEDDVEDEERAAEVDKVKGLNVGIHKKAKRNDSVGSVKGDNGSLDTKKIVVGGKMSKELEIPYIIEAPKTFEELCSLVDKRSNSDTILIINRIRKSNPITLAAENRKKVQVFYGVLLQYFAVLANKKTLNVELINMLVKPLIEMSTEIPYFAAICARRRIEITRKQFVESIKNAESSSWPSSKTLCLLRLWSMVFPCSDFRHPVMTPVILLMCEYLMRCPITSGRDIAVFKQSRKFCPEPIVFIQTLLLATTESKHISCENSQLYHLMELKDLKPLLRINEEVDKISALNFFKLIDMPEDSPFFTTDSFRASVLVTSVETLQGYINAYDNLSSFPEIFLPILRLLLEIAEQKNMPNALRDKIKDVAELIKLKVDEHHTLRRPLQMRKQKPVPIKLLNPKFEENYVKGRDYDPDSERAERKKLKREVRREAKGAAREIRKDNYFLLDVKEKERSLMEKARAEKYGRTKAFLQEQEHAFKSGQLGKGKKRSR*