Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894860 | GAU43507.1 | 62.132 | 272 | 66 | 4 | 13 | 283 | 543 | 778 | 6.90e-93 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894860 | A0A2Z6PGP1 | 62.132 | 272 | 66 | 4 | 13 | 283 | 543 | 778 | 3.30e-93 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0894860 | 0.808033 | 3.777188e-50 | -8.615850e-47 |
| Msa0022310 | Msa0894860 | 0.807256 | 5.523589e-50 | -8.615850e-47 |
| Msa0638280 | Msa0894860 | 0.802774 | 4.783792e-49 | -8.615850e-47 |
| Msa0638320 | Msa0894860 | 0.802566 | 5.278687e-49 | -8.615850e-47 |
| Msa0657970 | Msa0894860 | 0.800180 | 1.626640e-48 | -8.615850e-47 |
| Msa0693380 | Msa0894860 | 0.822666 | 2.096876e-53 | -8.615850e-47 |
| Msa0744040 | Msa0894860 | 0.803281 | 3.757012e-49 | -8.615850e-47 |
| Msa0756630 | Msa0894860 | -0.812404 | 4.313126e-51 | -8.615850e-47 |
| Msa0333720 | Msa0894860 | -0.811060 | 8.455800e-51 | -8.615850e-47 |
| Msa0894860 | Msa0921600 | 0.829228 | 5.789306e-55 | -8.615850e-47 |
| Msa0894860 | Msa1014540 | 0.817248 | 3.638765e-52 | -8.615850e-47 |
| Msa0894860 | Msa1082500 | 0.825151 | 5.481568e-54 | -8.615850e-47 |
| Msa0894860 | Msa1117170 | 0.807784 | 4.268123e-50 | -8.615850e-47 |
| Msa0894860 | Msa1161280 | 0.804796 | 1.818426e-49 | -8.615850e-47 |
| Msa0894860 | Msa1238470 | 0.804708 | 1.897814e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894860 | MtrunA17_Chr1g0206371 | 93.333 | 120 | 8 | 0 | 13 | 132 | 90 | 209 | 9.57e-80 | 241 |
| Msa0894860 | MtrunA17_Chr8g0380341 | 35.060 | 251 | 115 | 5 | 6 | 212 | 508 | 754 | 2.60e-36 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACCAGACCTTCCCTTTA+GGG | 0.251882 | 6_1:-81418137 | None:intergenic |
| TCTTCTTCACTTAAATCTTC+TGG | 0.269736 | 6_1:-81417450 | None:intergenic |
| GCAAACCAGACCTTCCCTTT+AGG | 0.271614 | 6_1:-81418138 | None:intergenic |
| TATCACCTAGAAGCTGGATA+TGG | 0.294596 | 6_1:+81418019 | Msa0894860:CDS |
| ATTTACAGGAAATTAGTAAA+AGG | 0.297837 | 6_1:+81417597 | Msa0894860:intron |
| TGTCCCCATATCCAGCTTCT+AGG | 0.304977 | 6_1:-81418024 | None:intergenic |
| CAAGATAGTATCAAAAGTTT+TGG | 0.320956 | 6_1:+81417201 | Msa0894860:CDS |
| CTATCTCATTTGTCTTGTAT+TGG | 0.330663 | 6_1:-81417413 | None:intergenic |
| AAGATTTAAGTGAAGAAGAT+TGG | 0.343547 | 6_1:+81417454 | Msa0894860:CDS |
| TACAAGAATACCTTGAATTC+AGG | 0.378166 | 6_1:-81417504 | None:intergenic |
| TCGAGATATTGTCGTGCCTT+GGG | 0.441515 | 6_1:+81418100 | Msa0894860:CDS |
| ATCACCTAGAAGCTGGATAT+GGG | 0.443128 | 6_1:+81418020 | Msa0894860:CDS |
| TATTGTCGTGCCTTGGGAGC+TGG | 0.446927 | 6_1:+81418106 | Msa0894860:CDS |
| AAACCCCTAAAGGGAAGGTC+TGG | 0.453319 | 6_1:+81418133 | Msa0894860:CDS |
| CAAGACAAATGAGATAGCTT+TGG | 0.454080 | 6_1:+81417419 | Msa0894860:CDS |
| ATCGAGATATTGTCGTGCCT+TGG | 0.458329 | 6_1:+81418099 | Msa0894860:CDS |
| AGCTGGAATTAAACCCCTAA+AGG | 0.483125 | 6_1:+81418123 | Msa0894860:CDS |
| TGAAGAAGATTGGAAGTACT+TGG | 0.484679 | 6_1:+81417464 | Msa0894860:CDS |
| TTTGCAAGAACAATTAGAAA+AGG | 0.490497 | 6_1:+81418156 | Msa0894860:CDS |
| CTCGTTACCTCCATTGTGCA+AGG | 0.499738 | 6_1:-81417125 | None:intergenic |
| GGGTTTAATTCCAGCTCCCA+AGG | 0.507651 | 6_1:-81418116 | None:intergenic |
| TCTTCATATCACCTAGAAGC+TGG | 0.509469 | 6_1:+81418013 | Msa0894860:CDS |
| AAGGCAACTAGGAGAAAAGA+TGG | 0.513002 | 6_1:+81418288 | Msa0894860:CDS |
| GCTGGAATTAAACCCCTAAA+GGG | 0.516789 | 6_1:+81418124 | Msa0894860:CDS |
| GAAGAGAGTCAAAGGCAACT+AGG | 0.523426 | 6_1:+81418277 | Msa0894860:CDS |
| CAAAATTTGAAGAGAGTCAA+AGG | 0.540392 | 6_1:+81418269 | Msa0894860:CDS |
| ACATAGCAACGCTAAAGGAA+TGG | 0.545572 | 6_1:+81417152 | Msa0894860:CDS |
| GAGATACATAGCAACGCTAA+AGG | 0.556946 | 6_1:+81417147 | Msa0894860:CDS |
| CAAGTTATTAATCATAGATG+TGG | 0.560799 | 6_1:+81417641 | Msa0894860:CDS |
| AAGTAAGAAACCTTGCACAA+TGG | 0.577200 | 6_1:+81417115 | None:intergenic |
| AAAGATGGAGAAACAAGTTG+AGG | 0.590251 | 6_1:+81418303 | Msa0894860:CDS |
| AAACATGAGGGAAGAAATGA+CGG | 0.594283 | 6_1:+81418246 | Msa0894860:CDS |
| AAACCAGACCTTCCCTTTAG+GGG | 0.599446 | 6_1:-81418136 | None:intergenic |
| GAATTAAACCCCTAAAGGGA+AGG | 0.614459 | 6_1:+81418128 | Msa0894860:CDS |
| TAAGAAACCTTGCACAATGG+AGG | 0.621252 | 6_1:+81417118 | None:intergenic |
| TCACCTAGAAGCTGGATATG+GGG | 0.621320 | 6_1:+81418021 | Msa0894860:CDS |
| AATGTCTGAACTTGTTCACA+AGG | 0.634831 | 6_1:+81418528 | Msa0894860:CDS |
| TTATTAATCATAGATGTGGA+AGG | 0.653917 | 6_1:+81417645 | Msa0894860:CDS |
| TCAAGCTGTTAGCTATGACG+CGG | 0.706731 | 6_1:+81417676 | Msa0894860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATTAAATTTGTCA+TGG | + | chr6_1:81418446-81418465 | Msa0894860:intron | 10.0% |
| !!! | TATTTTATTAAATTTGTCAT+GGG | + | chr6_1:81418447-81418466 | Msa0894860:intron | 10.0% |
| !!! | GTTATTTTGAATATTTTTAT+AGG | + | chr6_1:81418471-81418490 | Msa0894860:intron | 10.0% |
| !!! | TTATTTTATTAAATTTGTCA+TGG | + | chr6_1:81418446-81418465 | Msa0894860:intron | 10.0% |
| !!! | TATTTTATTAAATTTGTCAT+GGG | + | chr6_1:81418447-81418466 | Msa0894860:intron | 10.0% |
| !!! | GTTATTTTGAATATTTTTAT+AGG | + | chr6_1:81418471-81418490 | Msa0894860:intron | 10.0% |
| !! | AAGCAATCAATTAAATAAAA+AGG | - | chr6_1:81417244-81417263 | None:intergenic | 15.0% |
| !! | TGATAAATATACCAAAAAAA+GGG | - | chr6_1:81417724-81417743 | None:intergenic | 15.0% |
| !! | ATGATAAATATACCAAAAAA+AGG | - | chr6_1:81417725-81417744 | None:intergenic | 15.0% |
| !! | TATGTTTAACAAATCAAAAA+AGG | - | chr6_1:81417917-81417936 | None:intergenic | 15.0% |
| !!! | TTTACATTTTTAAATAGATG+AGG | + | chr6_1:81417978-81417997 | Msa0894860:intron | 15.0% |
| !!! | TTACATTTTTAAATAGATGA+GGG | + | chr6_1:81417979-81417998 | Msa0894860:intron | 15.0% |
| !! | AAGCAATCAATTAAATAAAA+AGG | - | chr6_1:81417244-81417263 | None:intergenic | 15.0% |
| !! | TGATAAATATACCAAAAAAA+GGG | - | chr6_1:81417724-81417743 | None:intergenic | 15.0% |
| !! | ATGATAAATATACCAAAAAA+AGG | - | chr6_1:81417725-81417744 | None:intergenic | 15.0% |
| !! | TATGTTTAACAAATCAAAAA+AGG | - | chr6_1:81417917-81417936 | None:intergenic | 15.0% |
| !!! | TTTACATTTTTAAATAGATG+AGG | + | chr6_1:81417978-81417997 | Msa0894860:intron | 15.0% |
| !!! | TTACATTTTTAAATAGATGA+GGG | + | chr6_1:81417979-81417998 | Msa0894860:intron | 15.0% |
| !! | ATTTACAGGAAATTAGTAAA+AGG | + | chr6_1:81417597-81417616 | Msa0894860:intron | 20.0% |
| !! | TGGTTATTTATATACTTACT+TGG | - | chr6_1:81418366-81418385 | None:intergenic | 20.0% |
| !! | AGTATATAAATAACCATAGT+TGG | + | chr6_1:81418370-81418389 | Msa0894860:intron | 20.0% |
| !!! | TTATATTTTTGTACCAACTA+TGG | - | chr6_1:81418386-81418405 | None:intergenic | 20.0% |
| !!! | TGAATATTTTTATAGGGTAT+CGG | + | chr6_1:81418478-81418497 | Msa0894860:intron | 20.0% |
| !! | ATTTACAGGAAATTAGTAAA+AGG | + | chr6_1:81417597-81417616 | Msa0894860:intron | 20.0% |
| !! | TGGTTATTTATATACTTACT+TGG | - | chr6_1:81418366-81418385 | None:intergenic | 20.0% |
| !! | AGTATATAAATAACCATAGT+TGG | + | chr6_1:81418370-81418389 | Msa0894860:intron | 20.0% |
| !!! | TTATATTTTTGTACCAACTA+TGG | - | chr6_1:81418386-81418405 | None:intergenic | 20.0% |
| !!! | TGAATATTTTTATAGGGTAT+CGG | + | chr6_1:81418478-81418497 | Msa0894860:intron | 20.0% |
| !! | CAAGATAGTATCAAAAGTTT+TGG | + | chr6_1:81417201-81417220 | Msa0894860:CDS | 25.0% |
| ! | AAGATTTAAGTGAAGAAGAT+TGG | + | chr6_1:81417454-81417473 | Msa0894860:CDS | 25.0% |
| !!! | TTTCTACTTGTGTTATTTAC+AGG | + | chr6_1:81417583-81417602 | Msa0894860:intron | 25.0% |
| ! | CAAGTTATTAATCATAGATG+TGG | + | chr6_1:81417641-81417660 | Msa0894860:CDS | 25.0% |
| ! | TTATTAATCATAGATGTGGA+AGG | + | chr6_1:81417645-81417664 | Msa0894860:CDS | 25.0% |
| !!! | ATATCAAATCTCCCTTTTTT+TGG | + | chr6_1:81417710-81417729 | Msa0894860:intron | 25.0% |
| !!! | TATTGCTTTTAAATCAGTTG+TGG | + | chr6_1:81418069-81418088 | Msa0894860:CDS | 25.0% |
| !!! | ATTGCTTTTAAATCAGTTGT+GGG | + | chr6_1:81418070-81418089 | Msa0894860:CDS | 25.0% |
| ! | TTTGCAAGAACAATTAGAAA+AGG | + | chr6_1:81418156-81418175 | Msa0894860:CDS | 25.0% |
| !! | CAAGATAGTATCAAAAGTTT+TGG | + | chr6_1:81417201-81417220 | Msa0894860:CDS | 25.0% |
| ! | AAGATTTAAGTGAAGAAGAT+TGG | + | chr6_1:81417454-81417473 | Msa0894860:CDS | 25.0% |
| !!! | TTTCTACTTGTGTTATTTAC+AGG | + | chr6_1:81417583-81417602 | Msa0894860:intron | 25.0% |
| ! | CAAGTTATTAATCATAGATG+TGG | + | chr6_1:81417641-81417660 | Msa0894860:CDS | 25.0% |
| ! | TTATTAATCATAGATGTGGA+AGG | + | chr6_1:81417645-81417664 | Msa0894860:CDS | 25.0% |
| !!! | ATATCAAATCTCCCTTTTTT+TGG | + | chr6_1:81417710-81417729 | Msa0894860:intron | 25.0% |
| !!! | TATTGCTTTTAAATCAGTTG+TGG | + | chr6_1:81418069-81418088 | Msa0894860:CDS | 25.0% |
| !!! | ATTGCTTTTAAATCAGTTGT+GGG | + | chr6_1:81418070-81418089 | Msa0894860:CDS | 25.0% |
| ! | TTTGCAAGAACAATTAGAAA+AGG | + | chr6_1:81418156-81418175 | Msa0894860:CDS | 25.0% |
| TCTGCACTCAACAATTAAAA+TGG | - | chr6_1:81417290-81417309 | None:intergenic | 30.0% | |
| CTATCTCATTTGTCTTGTAT+TGG | - | chr6_1:81417416-81417435 | None:intergenic | 30.0% | |
| TCTTCTTCACTTAAATCTTC+TGG | - | chr6_1:81417453-81417472 | None:intergenic | 30.0% | |
| !!! | TTTTTCAAGTCCTGAATTCA+AGG | + | chr6_1:81417494-81417513 | Msa0894860:CDS | 30.0% |
| TACAAGAATACCTTGAATTC+AGG | - | chr6_1:81417507-81417526 | None:intergenic | 30.0% | |
| CTCCATAAATCCTTATAGTT+GGG | - | chr6_1:81417827-81417846 | None:intergenic | 30.0% | |
| TCTCCATAAATCCTTATAGT+TGG | - | chr6_1:81417828-81417847 | None:intergenic | 30.0% | |
| ATGGATAAATGATGCTTCTA+AGG | + | chr6_1:81417874-81417893 | Msa0894860:intron | 30.0% | |
| !! | TTGCTTTTAAATCAGTTGTG+GGG | + | chr6_1:81418071-81418090 | Msa0894860:CDS | 30.0% |
| CAAAATTTGAAGAGAGTCAA+AGG | + | chr6_1:81418269-81418288 | Msa0894860:CDS | 30.0% | |
| ! | GAAACAAGTTGAGGAAAAAA+TGG | + | chr6_1:81418312-81418331 | Msa0894860:CDS | 30.0% |
| TCTGCACTCAACAATTAAAA+TGG | - | chr6_1:81417290-81417309 | None:intergenic | 30.0% | |
| CTATCTCATTTGTCTTGTAT+TGG | - | chr6_1:81417416-81417435 | None:intergenic | 30.0% | |
| TCTTCTTCACTTAAATCTTC+TGG | - | chr6_1:81417453-81417472 | None:intergenic | 30.0% | |
| !!! | TTTTTCAAGTCCTGAATTCA+AGG | + | chr6_1:81417494-81417513 | Msa0894860:CDS | 30.0% |
| TACAAGAATACCTTGAATTC+AGG | - | chr6_1:81417507-81417526 | None:intergenic | 30.0% | |
| CTCCATAAATCCTTATAGTT+GGG | - | chr6_1:81417827-81417846 | None:intergenic | 30.0% | |
| TCTCCATAAATCCTTATAGT+TGG | - | chr6_1:81417828-81417847 | None:intergenic | 30.0% | |
| ATGGATAAATGATGCTTCTA+AGG | + | chr6_1:81417874-81417893 | Msa0894860:intron | 30.0% | |
| !! | TTGCTTTTAAATCAGTTGTG+GGG | + | chr6_1:81418071-81418090 | Msa0894860:CDS | 30.0% |
| CAAAATTTGAAGAGAGTCAA+AGG | + | chr6_1:81418269-81418288 | Msa0894860:CDS | 30.0% | |
| ! | GAAACAAGTTGAGGAAAAAA+TGG | + | chr6_1:81418312-81418331 | Msa0894860:CDS | 30.0% |
| !!! | ATCTTGTTTTCTGTCTCTTG+TGG | - | chr6_1:81417187-81417206 | None:intergenic | 35.0% |
| CAAGACAAATGAGATAGCTT+TGG | + | chr6_1:81417419-81417438 | Msa0894860:CDS | 35.0% | |
| !! | TGAAGAAGATTGGAAGTACT+TGG | + | chr6_1:81417464-81417483 | Msa0894860:CDS | 35.0% |
| AGCCCAACTATAAGGATTTA+TGG | + | chr6_1:81417822-81417841 | Msa0894860:intron | 35.0% | |
| ATGACTCACACAAACAACAA+CGG | + | chr6_1:81417848-81417867 | Msa0894860:intron | 35.0% | |
| ACACAAACAACAACGGATAA+TGG | + | chr6_1:81417855-81417874 | Msa0894860:intron | 35.0% | |
| ! | TGCTTTTAAATCAGTTGTGG+GGG | + | chr6_1:81418072-81418091 | Msa0894860:CDS | 35.0% |
| AAACATGAGGGAAGAAATGA+CGG | + | chr6_1:81418246-81418265 | Msa0894860:CDS | 35.0% | |
| AAAGATGGAGAAACAAGTTG+AGG | + | chr6_1:81418303-81418322 | Msa0894860:CDS | 35.0% | |
| ! | AATGTCTGAACTTGTTCACA+AGG | + | chr6_1:81418528-81418547 | Msa0894860:CDS | 35.0% |
| !!! | ATCTTGTTTTCTGTCTCTTG+TGG | - | chr6_1:81417187-81417206 | None:intergenic | 35.0% |
| CAAGACAAATGAGATAGCTT+TGG | + | chr6_1:81417419-81417438 | Msa0894860:CDS | 35.0% | |
| !! | TGAAGAAGATTGGAAGTACT+TGG | + | chr6_1:81417464-81417483 | Msa0894860:CDS | 35.0% |
| AGCCCAACTATAAGGATTTA+TGG | + | chr6_1:81417822-81417841 | Msa0894860:intron | 35.0% | |
| ATGACTCACACAAACAACAA+CGG | + | chr6_1:81417848-81417867 | Msa0894860:intron | 35.0% | |
| ACACAAACAACAACGGATAA+TGG | + | chr6_1:81417855-81417874 | Msa0894860:intron | 35.0% | |
| ! | TGCTTTTAAATCAGTTGTGG+GGG | + | chr6_1:81418072-81418091 | Msa0894860:CDS | 35.0% |
| AAACATGAGGGAAGAAATGA+CGG | + | chr6_1:81418246-81418265 | Msa0894860:CDS | 35.0% | |
| AAAGATGGAGAAACAAGTTG+AGG | + | chr6_1:81418303-81418322 | Msa0894860:CDS | 35.0% | |
| ! | AATGTCTGAACTTGTTCACA+AGG | + | chr6_1:81418528-81418547 | Msa0894860:CDS | 35.0% |
| GAGATACATAGCAACGCTAA+AGG | + | chr6_1:81417147-81417166 | Msa0894860:CDS | 40.0% | |
| ACATAGCAACGCTAAAGGAA+TGG | + | chr6_1:81417152-81417171 | Msa0894860:CDS | 40.0% | |
| ! | CTTATAGTTGGGCTCCTTTT+CGG | - | chr6_1:81417816-81417835 | None:intergenic | 40.0% |
| TCTTCATATCACCTAGAAGC+TGG | + | chr6_1:81418013-81418032 | Msa0894860:CDS | 40.0% | |
| TATCACCTAGAAGCTGGATA+TGG | + | chr6_1:81418019-81418038 | Msa0894860:CDS | 40.0% | |
| ATCACCTAGAAGCTGGATAT+GGG | + | chr6_1:81418020-81418039 | Msa0894860:CDS | 40.0% | |
| AGCTGGAATTAAACCCCTAA+AGG | + | chr6_1:81418123-81418142 | Msa0894860:CDS | 40.0% | |
| GCTGGAATTAAACCCCTAAA+GGG | + | chr6_1:81418124-81418143 | Msa0894860:CDS | 40.0% | |
| GAATTAAACCCCTAAAGGGA+AGG | + | chr6_1:81418128-81418147 | Msa0894860:CDS | 40.0% | |
| TCGAAAAAGAGCGAAACATG+AGG | + | chr6_1:81418233-81418252 | Msa0894860:CDS | 40.0% | |
| CGAAAAAGAGCGAAACATGA+GGG | + | chr6_1:81418234-81418253 | Msa0894860:CDS | 40.0% | |
| AAGGCAACTAGGAGAAAAGA+TGG | + | chr6_1:81418288-81418307 | Msa0894860:CDS | 40.0% | |
| GAGATACATAGCAACGCTAA+AGG | + | chr6_1:81417147-81417166 | Msa0894860:CDS | 40.0% | |
| ACATAGCAACGCTAAAGGAA+TGG | + | chr6_1:81417152-81417171 | Msa0894860:CDS | 40.0% | |
| ! | CTTATAGTTGGGCTCCTTTT+CGG | - | chr6_1:81417816-81417835 | None:intergenic | 40.0% |
| TCTTCATATCACCTAGAAGC+TGG | + | chr6_1:81418013-81418032 | Msa0894860:CDS | 40.0% | |
| TATCACCTAGAAGCTGGATA+TGG | + | chr6_1:81418019-81418038 | Msa0894860:CDS | 40.0% | |
| ATCACCTAGAAGCTGGATAT+GGG | + | chr6_1:81418020-81418039 | Msa0894860:CDS | 40.0% | |
| AGCTGGAATTAAACCCCTAA+AGG | + | chr6_1:81418123-81418142 | Msa0894860:CDS | 40.0% | |
| GCTGGAATTAAACCCCTAAA+GGG | + | chr6_1:81418124-81418143 | Msa0894860:CDS | 40.0% | |
| GAATTAAACCCCTAAAGGGA+AGG | + | chr6_1:81418128-81418147 | Msa0894860:CDS | 40.0% | |
| TCGAAAAAGAGCGAAACATG+AGG | + | chr6_1:81418233-81418252 | Msa0894860:CDS | 40.0% | |
| CGAAAAAGAGCGAAACATGA+GGG | + | chr6_1:81418234-81418253 | Msa0894860:CDS | 40.0% | |
| AAGGCAACTAGGAGAAAAGA+TGG | + | chr6_1:81418288-81418307 | Msa0894860:CDS | 40.0% | |
| TCAAGCTGTTAGCTATGACG+CGG | + | chr6_1:81417676-81417695 | Msa0894860:CDS | 45.0% | |
| GAGAGATCCTGAAACCGAAA+AGG | + | chr6_1:81417799-81417818 | Msa0894860:intron | 45.0% | |
| CGAAAAGGAGCCCAACTATA+AGG | + | chr6_1:81417814-81417833 | Msa0894860:intron | 45.0% | |
| TCACCTAGAAGCTGGATATG+GGG | + | chr6_1:81418021-81418040 | Msa0894860:CDS | 45.0% | |
| ATCGAGATATTGTCGTGCCT+TGG | + | chr6_1:81418099-81418118 | Msa0894860:CDS | 45.0% | |
| TCGAGATATTGTCGTGCCTT+GGG | + | chr6_1:81418100-81418119 | Msa0894860:CDS | 45.0% | |
| AAACCAGACCTTCCCTTTAG+GGG | - | chr6_1:81418139-81418158 | None:intergenic | 45.0% | |
| CAAACCAGACCTTCCCTTTA+GGG | - | chr6_1:81418140-81418159 | None:intergenic | 45.0% | |
| GAAGAGAGTCAAAGGCAACT+AGG | + | chr6_1:81418277-81418296 | Msa0894860:CDS | 45.0% | |
| TCAAGCTGTTAGCTATGACG+CGG | + | chr6_1:81417676-81417695 | Msa0894860:CDS | 45.0% | |
| GAGAGATCCTGAAACCGAAA+AGG | + | chr6_1:81417799-81417818 | Msa0894860:intron | 45.0% | |
| CGAAAAGGAGCCCAACTATA+AGG | + | chr6_1:81417814-81417833 | Msa0894860:intron | 45.0% | |
| TCACCTAGAAGCTGGATATG+GGG | + | chr6_1:81418021-81418040 | Msa0894860:CDS | 45.0% | |
| ATCGAGATATTGTCGTGCCT+TGG | + | chr6_1:81418099-81418118 | Msa0894860:CDS | 45.0% | |
| TCGAGATATTGTCGTGCCTT+GGG | + | chr6_1:81418100-81418119 | Msa0894860:CDS | 45.0% | |
| AAACCAGACCTTCCCTTTAG+GGG | - | chr6_1:81418139-81418158 | None:intergenic | 45.0% | |
| CAAACCAGACCTTCCCTTTA+GGG | - | chr6_1:81418140-81418159 | None:intergenic | 45.0% | |
| GAAGAGAGTCAAAGGCAACT+AGG | + | chr6_1:81418277-81418296 | Msa0894860:CDS | 45.0% | |
| !!! | TTATTTTGAATATTTTTATA+GGG | + | chr6_1:81418472-81418491 | Msa0894860:intron | 5.0% |
| !!! | TTATTTTGAATATTTTTATA+GGG | + | chr6_1:81418472-81418491 | Msa0894860:intron | 5.0% |
| ! | TTGGGCTCCTTTTCGGTTTC+AGG | - | chr6_1:81417809-81417828 | None:intergenic | 50.0% |
| TGTCCCCATATCCAGCTTCT+AGG | - | chr6_1:81418027-81418046 | None:intergenic | 50.0% | |
| GGGTTTAATTCCAGCTCCCA+AGG | - | chr6_1:81418119-81418138 | None:intergenic | 50.0% | |
| AAACCCCTAAAGGGAAGGTC+TGG | + | chr6_1:81418133-81418152 | Msa0894860:CDS | 50.0% | |
| GCAAACCAGACCTTCCCTTT+AGG | - | chr6_1:81418141-81418160 | None:intergenic | 50.0% | |
| ! | TTGGGCTCCTTTTCGGTTTC+AGG | - | chr6_1:81417809-81417828 | None:intergenic | 50.0% |
| TGTCCCCATATCCAGCTTCT+AGG | - | chr6_1:81418027-81418046 | None:intergenic | 50.0% | |
| GGGTTTAATTCCAGCTCCCA+AGG | - | chr6_1:81418119-81418138 | None:intergenic | 50.0% | |
| AAACCCCTAAAGGGAAGGTC+TGG | + | chr6_1:81418133-81418152 | Msa0894860:CDS | 50.0% | |
| GCAAACCAGACCTTCCCTTT+AGG | - | chr6_1:81418141-81418160 | None:intergenic | 50.0% | |
| TATTGTCGTGCCTTGGGAGC+TGG | + | chr6_1:81418106-81418125 | Msa0894860:CDS | 55.0% | |
| TATTGTCGTGCCTTGGGAGC+TGG | + | chr6_1:81418106-81418125 | Msa0894860:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 81417127 | 81418583 | 81417127 | ID=Msa0894860;Name=Msa0894860 |
| chr6_1 | mRNA | 81417127 | 81418583 | 81417127 | ID=Msa0894860-mRNA-1;Parent=Msa0894860;Name=Msa0894860-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.25|0.2|0.6|1|1|5|4|284 |
| chr6_1 | exon | 81417127 | 81417222 | 81417127 | ID=Msa0894860-mRNA-1:exon:13714;Parent=Msa0894860-mRNA-1 |
| chr6_1 | exon | 81417309 | 81417515 | 81417309 | ID=Msa0894860-mRNA-1:exon:13715;Parent=Msa0894860-mRNA-1 |
| chr6_1 | exon | 81417605 | 81417697 | 81417605 | ID=Msa0894860-mRNA-1:exon:13716;Parent=Msa0894860-mRNA-1 |
| chr6_1 | exon | 81417995 | 81418366 | 81417995 | ID=Msa0894860-mRNA-1:exon:13717;Parent=Msa0894860-mRNA-1 |
| chr6_1 | exon | 81418493 | 81418583 | 81418493 | ID=Msa0894860-mRNA-1:exon:13718;Parent=Msa0894860-mRNA-1 |
| chr6_1 | CDS | 81417127 | 81417222 | 81417127 | ID=Msa0894860-mRNA-1:cds;Parent=Msa0894860-mRNA-1 |
| chr6_1 | CDS | 81417309 | 81417515 | 81417309 | ID=Msa0894860-mRNA-1:cds;Parent=Msa0894860-mRNA-1 |
| chr6_1 | CDS | 81417605 | 81417697 | 81417605 | ID=Msa0894860-mRNA-1:cds;Parent=Msa0894860-mRNA-1 |
| chr6_1 | CDS | 81417995 | 81418366 | 81417995 | ID=Msa0894860-mRNA-1:cds;Parent=Msa0894860-mRNA-1 |
| chr6_1 | CDS | 81418493 | 81418579 | 81418493 | ID=Msa0894860-mRNA-1:cds;Parent=Msa0894860-mRNA-1 |
| chr6_1 | three_prime_UTR | 81418580 | 81418583 | 81418580 | ID=Msa0894860-mRNA-1:three_prime_utr;Parent=Msa0894860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
