Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773180 | A0A072UTU8 | 64.407 | 177 | 31 | 2 | 8 | 156 | 114 | 286 | 1.18e-60 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002230 | Msa0773180 | 0.816905 | 4.345011e-52 | -8.615850e-47 |
| Msa0002240 | Msa0773180 | 0.809541 | 1.798518e-50 | -8.615850e-47 |
| Msa0014710 | Msa0773180 | 0.805137 | 1.543390e-49 | -8.615850e-47 |
| Msa0021210 | Msa0773180 | 0.820004 | 8.624153e-53 | -8.615850e-47 |
| Msa0031520 | Msa0773180 | 0.820686 | 6.015879e-53 | -8.615850e-47 |
| Msa0042920 | Msa0773180 | 0.808940 | 2.419164e-50 | -8.615850e-47 |
| Msa0044330 | Msa0773180 | 0.815165 | 1.062843e-51 | -8.615850e-47 |
| Msa0050380 | Msa0773180 | 0.820357 | 7.157439e-53 | -8.615850e-47 |
| Msa0075880 | Msa0773180 | 0.800543 | 1.372223e-48 | -8.615850e-47 |
| Msa0079180 | Msa0773180 | 0.801221 | 9.974014e-49 | -8.615850e-47 |
| Msa0099210 | Msa0773180 | 0.809563 | 1.778507e-50 | -8.615850e-47 |
| Msa0104800 | Msa0773180 | 0.808186 | 3.505261e-50 | -8.615850e-47 |
| Msa0114430 | Msa0773180 | 0.824418 | 8.157779e-54 | -8.615850e-47 |
| Msa0602980 | Msa0773180 | 0.838957 | 2.111738e-57 | -8.615850e-47 |
| Msa0603370 | Msa0773180 | 0.800353 | 1.499709e-48 | -8.615850e-47 |
| Msa0608160 | Msa0773180 | 0.807580 | 4.716159e-50 | -8.615850e-47 |
| Msa0615010 | Msa0773180 | 0.822182 | 2.716554e-53 | -8.615850e-47 |
| Msa0618470 | Msa0773180 | 0.805397 | 1.361408e-49 | -8.615850e-47 |
| Msa0620960 | Msa0773180 | 0.816280 | 5.998537e-52 | -8.615850e-47 |
| Msa0641670 | Msa0773180 | 0.801431 | 9.031927e-49 | -8.615850e-47 |
| Msa0645300 | Msa0773180 | 0.858774 | 6.539152e-63 | -8.615850e-47 |
| Msa0648080 | Msa0773180 | 0.808766 | 2.635983e-50 | -8.615850e-47 |
| Msa0652940 | Msa0773180 | 0.801060 | 1.076183e-48 | -8.615850e-47 |
| Msa0659400 | Msa0773180 | 0.801038 | 1.087322e-48 | -8.615850e-47 |
| Msa0672450 | Msa0773180 | 0.822820 | 1.930172e-53 | -8.615850e-47 |
| Msa0672690 | Msa0773180 | 0.811134 | 8.148640e-51 | -8.615850e-47 |
| Msa0701010 | Msa0773180 | 0.837559 | 4.838711e-57 | -8.615850e-47 |
| Msa0731940 | Msa0773180 | 0.824711 | 6.961340e-54 | -8.615850e-47 |
| Msa0748970 | Msa0773180 | 0.842444 | 2.576045e-58 | -8.615850e-47 |
| Msa0755180 | Msa0773180 | 0.843280 | 1.544382e-58 | -8.615850e-47 |
| Msa0763890 | Msa0773180 | 0.802468 | 5.530534e-49 | -8.615850e-47 |
| Msa0763920 | Msa0773180 | 0.801939 | 7.105071e-49 | -8.615850e-47 |
| Msa0766630 | Msa0773180 | 0.812368 | 4.390586e-51 | -8.615850e-47 |
| Msa0768290 | Msa0773180 | 0.855969 | 4.414621e-62 | -8.615850e-47 |
| Msa0768370 | Msa0773180 | 0.863545 | 2.306486e-64 | -8.615850e-47 |
| Msa0773180 | Msa0807370 | 0.800027 | 1.747251e-48 | -8.615850e-47 |
| Msa0773180 | Msa0810220 | 0.804526 | 2.070572e-49 | -8.615850e-47 |
| Msa0773180 | Msa0820850 | 0.824309 | 8.653599e-54 | -8.615850e-47 |
| Msa0773180 | Msa0824590 | 0.824932 | 6.172332e-54 | -8.615850e-47 |
| Msa0773180 | Msa0831850 | 0.808088 | 3.677170e-50 | -8.615850e-47 |
| Msa0773180 | Msa0832340 | 0.802440 | 5.603511e-49 | -8.615850e-47 |
| Msa0773180 | Msa0844420 | 0.831537 | 1.577727e-55 | -8.615850e-47 |
| Msa0773180 | Msa0844450 | 0.803499 | 3.386052e-49 | -8.615850e-47 |
| Msa0773180 | Msa0844490 | 0.860587 | 1.861593e-63 | -8.615850e-47 |
| Msa0773180 | Msa0849030 | 0.818000 | 2.462094e-52 | -8.615850e-47 |
| Msa0773180 | Msa0853520 | 0.815402 | 9.416678e-52 | -8.615850e-47 |
| Msa0773180 | Msa0857640 | 0.809028 | 2.317125e-50 | -8.615850e-47 |
| Msa0773180 | Msa0861130 | 0.828902 | 6.944449e-55 | -8.615850e-47 |
| Msa0773180 | Msa0864070 | 0.803512 | 3.364308e-49 | -8.615850e-47 |
| Msa0773180 | Msa0877250 | 0.828078 | 1.097590e-54 | -8.615850e-47 |
| Msa0773180 | Msa0888260 | 0.825634 | 4.212491e-54 | -8.615850e-47 |
| Msa0773180 | Msa0890550 | 0.800312 | 1.529196e-48 | -8.615850e-47 |
| Msa0773180 | Msa0894710 | 0.814373 | 1.592065e-51 | -8.615850e-47 |
| Msa0773180 | Msa0896840 | 0.811022 | 8.617661e-51 | -8.615850e-47 |
| Msa0773180 | Msa0897330 | 0.806147 | 9.474521e-50 | -8.615850e-47 |
| Msa0773180 | Msa0899430 | 0.848269 | 6.826558e-60 | -8.615850e-47 |
| Msa0773180 | Msa0899450 | 0.857777 | 1.295415e-62 | -8.615850e-47 |
| Msa0773180 | Msa0900910 | 0.803146 | 4.006258e-49 | -8.615850e-47 |
| Msa0773180 | Msa0901070 | 0.851764 | 7.173535e-61 | -8.615850e-47 |
| Msa0773180 | Msa0919850 | 0.801081 | 1.065537e-48 | -8.615850e-47 |
| Msa0773180 | Msa0921420 | 0.816040 | 6.786435e-52 | -8.615850e-47 |
| Msa0773180 | Msa0927380 | 0.866069 | 3.731308e-65 | -8.615850e-47 |
| Msa0773180 | Msa0936300 | 0.825132 | 5.537010e-54 | -8.615850e-47 |
| Msa0773180 | Msa0948320 | 0.837543 | 4.884780e-57 | -8.615850e-47 |
| Msa0773180 | Msa0953120 | 0.800821 | 1.203824e-48 | -8.615850e-47 |
| Msa0773180 | Msa0958550 | 0.842716 | 2.182264e-58 | -8.615850e-47 |
| Msa0773180 | Msa0960390 | 0.830825 | 2.361398e-55 | -8.615850e-47 |
| Msa0773180 | Msa0962840 | 0.812919 | 3.327125e-51 | -8.615850e-47 |
| Msa0773180 | Msa0964900 | 0.838527 | 2.727120e-57 | -8.615850e-47 |
| Msa0773180 | Msa0966750 | 0.838320 | 3.084292e-57 | -8.615850e-47 |
| Msa0773180 | Msa0967280 | 0.804693 | 1.911551e-49 | -8.615850e-47 |
| Msa0773180 | Msa0969370 | 0.806180 | 9.322219e-50 | -8.615850e-47 |
| Msa0773180 | Msa0969520 | 0.801324 | 9.502302e-49 | -8.615850e-47 |
| Msa0773180 | Msa0969810 | 0.804679 | 1.924266e-49 | -8.615850e-47 |
| Msa0773180 | Msa0973100 | 0.827630 | 1.406958e-54 | -8.615850e-47 |
| Msa0773180 | Msa0974080 | 0.827393 | 1.603715e-54 | -8.615850e-47 |
| Msa0773180 | Msa0976670 | 0.820731 | 5.875757e-53 | -8.615850e-47 |
| Msa0773180 | Msa0992280 | 0.804288 | 2.321676e-49 | -8.615850e-47 |
| Msa0773180 | Msa0998690 | 0.808286 | 3.337714e-50 | -8.615850e-47 |
| Msa0773180 | Msa1000860 | 0.818256 | 2.155378e-52 | -8.615850e-47 |
| Msa0773180 | Msa1000880 | 0.802818 | 4.684160e-49 | -8.615850e-47 |
| Msa0773180 | Msa1000890 | 0.863749 | 1.993395e-64 | -8.615850e-47 |
| Msa0773180 | Msa1000900 | 0.850512 | 1.618421e-60 | -8.615850e-47 |
| Msa0773180 | Msa1014540 | 0.806457 | 8.149466e-50 | -8.615850e-47 |
| Msa0773180 | Msa1023950 | 0.821526 | 3.852898e-53 | -8.615850e-47 |
| Msa0773180 | Msa1026940 | 0.806588 | 7.647141e-50 | -8.615850e-47 |
| Msa0773180 | Msa1034280 | 0.804385 | 2.216054e-49 | -8.615850e-47 |
| Msa0773180 | Msa1036610 | 0.805850 | 1.093904e-49 | -8.615850e-47 |
| Msa0773180 | Msa1050680 | 0.822147 | 2.766820e-53 | -8.615850e-47 |
| Msa0773180 | Msa1054150 | -0.805654 | 1.202658e-49 | -8.615850e-47 |
| Msa0773180 | Msa1075650 | 0.819840 | 9.399445e-53 | -8.615850e-47 |
| Msa0773180 | Msa1076960 | 0.800677 | 1.288117e-48 | -8.615850e-47 |
| Msa0773180 | Msa1082580 | 0.827189 | 1.794702e-54 | -8.615850e-47 |
| Msa0773180 | Msa1098250 | 0.812310 | 4.521850e-51 | -8.615850e-47 |
| Msa0773180 | Msa1104090 | 0.810097 | 1.365545e-50 | -8.615850e-47 |
| Msa0773180 | Msa1110090 | 0.812464 | 4.184034e-51 | -8.615850e-47 |
| Msa0773180 | Msa1111870 | 0.856883 | 2.380896e-62 | -8.615850e-47 |
| Msa0773180 | Msa1113170 | 0.803961 | 2.715272e-49 | -8.615850e-47 |
| Msa0773180 | Msa1120610 | 0.829886 | 4.004911e-55 | -8.615850e-47 |
| Msa0773180 | Msa1120740 | 0.802252 | 6.128024e-49 | -8.615850e-47 |
| Msa0773180 | Msa1121480 | 0.837912 | 3.928355e-57 | -8.615850e-47 |
| Msa0773180 | Msa1121490 | 0.846846 | 1.680721e-59 | -8.615850e-47 |
| Msa0773180 | Msa1137570 | 0.806627 | 7.503100e-50 | -8.615850e-47 |
| Msa0773180 | Msa1143020 | 0.805033 | 1.622557e-49 | -8.615850e-47 |
| Msa0773180 | Msa1156020 | 0.818050 | 2.399450e-52 | -8.615850e-47 |
| Msa0773180 | Msa1185110 | 0.818429 | 1.969631e-52 | -8.615850e-47 |
| Msa0773180 | Msa1195180 | 0.874086 | 8.885883e-68 | -8.615850e-47 |
| Msa0773180 | Msa1195190 | 0.839956 | 1.161858e-57 | -8.615850e-47 |
| Msa0773180 | Msa1227730 | 0.839353 | 1.667377e-57 | -8.615850e-47 |
| Msa0773180 | Msa1233890 | 0.806862 | 6.692861e-50 | -8.615850e-47 |
| Msa0773180 | Msa1237980 | 0.810952 | 8.926089e-51 | -8.615850e-47 |
| Msa0773180 | Msa1246360 | 0.807399 | 5.151404e-50 | -8.615850e-47 |
| Msa0773180 | Msa1255080 | 0.810348 | 1.205644e-50 | -8.615850e-47 |
| Msa0773180 | Msa1277660 | 0.817286 | 3.568579e-52 | -8.615850e-47 |
| Msa0773180 | Msa1284680 | 0.820729 | 5.882343e-53 | -8.615850e-47 |
| Msa0773180 | Msa1286800 | 0.841325 | 5.089895e-58 | -8.615850e-47 |
| Msa0773180 | Msa1287190 | 0.825743 | 3.969382e-54 | -8.615850e-47 |
| Msa0773180 | Msa1287220 | 0.810031 | 1.410573e-50 | -8.615850e-47 |
| Msa0773180 | Msa1348760 | 0.800299 | 1.538045e-48 | -8.615850e-47 |
| Msa0773180 | Msa1353470 | 0.812396 | 4.329703e-51 | -8.615850e-47 |
| Msa0773180 | Msa1366810 | 0.854535 | 1.153543e-61 | -8.615850e-47 |
| Msa0773180 | Msa1366970 | 0.824718 | 6.933182e-54 | -8.615850e-47 |
| Msa0773180 | Msa1378940 | 0.812162 | 4.869434e-51 | -8.615850e-47 |
| Msa0773180 | Msa1390700 | 0.805014 | 1.637691e-49 | -8.615850e-47 |
| Msa0773180 | Msa1394310 | 0.834347 | 3.159975e-56 | -8.615850e-47 |
| Msa0773180 | Msa1403480 | 0.802988 | 4.319994e-49 | -8.615850e-47 |
| Msa0773180 | Msa1410680 | 0.804209 | 2.411172e-49 | -8.615850e-47 |
| Msa0773180 | Msa1420820 | 0.846659 | 1.890208e-59 | -8.615850e-47 |
| Msa0773180 | Msa1427230 | 0.818446 | 1.951574e-52 | -8.615850e-47 |
| Msa0773180 | Msa1443060 | 0.802676 | 5.010017e-49 | -8.615850e-47 |
| Msa0773180 | Msa1448640 | 0.802621 | 5.143994e-49 | -8.615850e-47 |
| Msa0773180 | Msa1451620 | -0.810667 | 1.028357e-50 | -8.615850e-47 |
| Msa0773180 | Msa1453560 | 0.802030 | 6.806638e-49 | -8.615850e-47 |
| Msa0773180 | Msa1454620 | 0.805621 | 1.222114e-49 | -8.615850e-47 |
| Msa0773180 | Msa1457160 | 0.809506 | 1.829303e-50 | -8.615850e-47 |
| Msa0773180 | Msa1458750 | 0.818436 | 1.962576e-52 | -8.615850e-47 |
| Msa0773180 | Msa1460830 | 0.807525 | 4.843324e-50 | -8.615850e-47 |
| Msa0131770 | Msa0773180 | 0.824838 | 6.497744e-54 | -8.615850e-47 |
| Msa0135660 | Msa0773180 | 0.844766 | 6.169608e-59 | -8.615850e-47 |
| Msa0171540 | Msa0773180 | 0.801321 | 9.516122e-49 | -8.615850e-47 |
| Msa0180500 | Msa0773180 | 0.811063 | 8.443110e-51 | -8.615850e-47 |
| Msa0198910 | Msa0773180 | 0.821308 | 4.327010e-53 | -8.615850e-47 |
| Msa0223010 | Msa0773180 | 0.805253 | 1.459807e-49 | -8.615850e-47 |
| Msa0226180 | Msa0773180 | 0.813734 | 2.202681e-51 | -8.615850e-47 |
| Msa0233080 | Msa0773180 | 0.811514 | 6.738723e-51 | -8.615850e-47 |
| Msa0381610 | Msa0773180 | -0.804297 | 2.311375e-49 | -8.615850e-47 |
| Msa0385840 | Msa0773180 | 0.825240 | 5.221625e-54 | -8.615850e-47 |
| Msa0387280 | Msa0773180 | 0.828224 | 1.012316e-54 | -8.615850e-47 |
| Msa0398200 | Msa0773180 | 0.801251 | 9.833954e-49 | -8.615850e-47 |
| Msa0401560 | Msa0773180 | 0.800150 | 1.649860e-48 | -8.615850e-47 |
| Msa0424320 | Msa0773180 | 0.824937 | 6.155634e-54 | -8.615850e-47 |
| Msa0425790 | Msa0773180 | 0.831067 | 2.059733e-55 | -8.615850e-47 |
| Msa0426900 | Msa0773180 | 0.804819 | 1.798557e-49 | -8.615850e-47 |
| Msa0430920 | Msa0773180 | 0.825014 | 5.905593e-54 | -8.615850e-47 |
| Msa0444750 | Msa0773180 | -0.804529 | 2.068049e-49 | -8.615850e-47 |
| Msa0446270 | Msa0773180 | 0.804121 | 2.515010e-49 | -8.615850e-47 |
| Msa0453580 | Msa0773180 | 0.819690 | 1.017225e-52 | -8.615850e-47 |
| Msa0479340 | Msa0773180 | 0.803834 | 2.884471e-49 | -8.615850e-47 |
| Msa0249560 | Msa0773180 | 0.804760 | 1.850353e-49 | -8.615850e-47 |
| Msa0251640 | Msa0773180 | 0.848759 | 4.995012e-60 | -8.615850e-47 |
| Msa0278110 | Msa0773180 | 0.813992 | 1.932678e-51 | -8.615850e-47 |
| Msa0278190 | Msa0773180 | 0.952234 | 3.757484e-110 | -8.615850e-47 |
| Msa0288100 | Msa0773180 | 0.820483 | 6.698886e-53 | -8.615850e-47 |
| Msa0288120 | Msa0773180 | 0.800029 | 1.745671e-48 | -8.615850e-47 |
| Msa0296480 | Msa0773180 | 0.806758 | 7.040939e-50 | -8.615850e-47 |
| Msa0305190 | Msa0773180 | 0.818434 | 1.964308e-52 | -8.615850e-47 |
| Msa0321310 | Msa0773180 | 0.833838 | 4.236956e-56 | -8.615850e-47 |
| Msa0336320 | Msa0773180 | 0.815303 | 9.905523e-52 | -8.615850e-47 |
| Msa0342750 | Msa0773180 | 0.844287 | 8.299224e-59 | -8.615850e-47 |
| Msa0350320 | Msa0773180 | -0.800978 | 1.118457e-48 | -8.615850e-47 |
| Msa0490140 | Msa0773180 | 0.843872 | 1.072791e-58 | -8.615850e-47 |
| Msa0502340 | Msa0773180 | 0.830620 | 2.649994e-55 | -8.615850e-47 |
| Msa0514320 | Msa0773180 | 0.840182 | 1.014205e-57 | -8.615850e-47 |
| Msa0518380 | Msa0773180 | 0.814907 | 1.213019e-51 | -8.615850e-47 |
| Msa0521740 | Msa0773180 | 0.827434 | 1.567595e-54 | -8.615850e-47 |
| Msa0523940 | Msa0773180 | 0.835141 | 1.994744e-56 | -8.615850e-47 |
| Msa0529040 | Msa0773180 | 0.814103 | 1.827014e-51 | -8.615850e-47 |
| Msa0535630 | Msa0773180 | 0.805175 | 1.515434e-49 | -8.615850e-47 |
| Msa0545700 | Msa0773180 | 0.835285 | 1.834649e-56 | -8.615850e-47 |
| Msa0548920 | Msa0773180 | 0.836907 | 7.106173e-57 | -8.615850e-47 |
| Msa0562440 | Msa0773180 | 0.811712 | 6.102570e-51 | -8.615850e-47 |
| Msa0585230 | Msa0773180 | 0.814353 | 1.609099e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773180 | MtrunA17_Chr4g0077081 | 70.455 | 132 | 11 | 1 | 8 | 111 | 24 | 155 | 1.96e-52 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTATGGGTTTGCGTGTT+AGG | 0.250227 | 5_2:+47881597 | Msa0773180:CDS |
| AATGTCCTTGATATCTCATT+TGG | 0.281700 | 5_2:+47880453 | None:intergenic |
| AATAAATTCATCCTCTAAAC+AGG | 0.294436 | 5_2:-47881621 | None:intergenic |
| ATTCAATGTGATTGCAGAAA+TGG | 0.312448 | 5_2:+47882730 | Msa0773180:three_prime_UTR |
| GGTTTAAAACTGTCATATAT+AGG | 0.314232 | 5_2:+47882513 | Msa0773180:three_prime_UTR |
| TTACTATTTATTTACACCTT+TGG | 0.323386 | 5_2:-47882808 | None:intergenic |
| AATTGATGAGTTAGTTTGTT+TGG | 0.334924 | 5_2:+47881664 | Msa0773180:CDS |
| GCGTGTTAGGCCCTGTTTAG+AGG | 0.383914 | 5_2:+47881610 | Msa0773180:CDS |
| TTCACCTACACTTGCATTCA+AGG | 0.390491 | 5_2:+47882755 | Msa0773180:three_prime_UTR |
| CAAGAAAAGGAAGAAGTGTT+TGG | 0.396796 | 5_2:+47882586 | Msa0773180:three_prime_UTR |
| AGGTTCTGCTGCATTGAATA+AGG | 0.403127 | 5_2:+47882325 | Msa0773180:CDS |
| ATTCATCCAATGCAGTTTCC+AGG | 0.407369 | 5_2:+47882118 | Msa0773180:CDS |
| TGGTGGTAAAGTTGAGGGCT+TGG | 0.407859 | 5_2:+47881709 | Msa0773180:CDS |
| TAAAATTATTGAAGTGTTTG+AGG | 0.418722 | 5_2:+47882182 | Msa0773180:CDS |
| GTGTAAATAAATAGTAAAGC+AGG | 0.425484 | 5_2:+47882814 | Msa0773180:three_prime_UTR |
| AATAAGGATGATAATGTTGC+TGG | 0.425882 | 5_2:+47882341 | Msa0773180:CDS |
| ATTATTGAAGTGTTTGAGGA+TGG | 0.427449 | 5_2:+47882186 | Msa0773180:CDS |
| ATATCTCATTTGGGAAGTGC+TGG | 0.430599 | 5_2:+47880463 | Msa0773180:CDS |
| ATATGCAGACTTGCTGTTCA+AGG | 0.433735 | 5_2:+47881551 | Msa0773180:intron |
| CAGTAAGGTGAAATGTTGTT+CGG | 0.434349 | 5_2:+47882368 | Msa0773180:exon |
| ATCAGAGACACAACAAGAAA+AGG | 0.437317 | 5_2:+47882573 | Msa0773180:three_prime_UTR |
| ATCACACGCTTATTTGTTGA+AGG | 0.441603 | 5_2:-47882899 | None:intergenic |
| GTTGTTGGTGGTAAAGTTGA+GGG | 0.444557 | 5_2:+47881704 | Msa0773180:CDS |
| AAATCTGCAGGCACCATCTC+AGG | 0.457778 | 5_2:-47882437 | None:intergenic |
| AGTAAGGTGAAATGTTGTTC+GGG | 0.468370 | 5_2:+47882369 | Msa0773180:exon |
| CTGATGGATCTTATCGTGTT+GGG | 0.468679 | 5_2:+47882142 | Msa0773180:CDS |
| ATGTCCTTGATATCTCATTT+GGG | 0.473775 | 5_2:+47880454 | Msa0773180:CDS |
| TGCAAATTCTTCAAATGTCA+AGG | 0.482661 | 5_2:+47882212 | Msa0773180:CDS |
| AAAGGAAGAAGTGTTTGGCT+TGG | 0.490292 | 5_2:+47882591 | Msa0773180:three_prime_UTR |
| TATTGAAGTGTTTGAGGATG+GGG | 0.498582 | 5_2:+47882188 | Msa0773180:CDS |
| TCGTGTTGGGAGGGTCTGTA+TGG | 0.505411 | 5_2:+47882155 | Msa0773180:CDS |
| TGTAAATAAATAGTAAAGCA+GGG | 0.514708 | 5_2:+47882815 | Msa0773180:three_prime_UTR |
| TTATTGAAGTGTTTGAGGAT+GGG | 0.515166 | 5_2:+47882187 | Msa0773180:CDS |
| AAAGTTGAGGGCTTGGTTGA+AGG | 0.515271 | 5_2:+47881716 | Msa0773180:CDS |
| AATGCAGTTTCCAGGTCTGA+TGG | 0.517090 | 5_2:+47882126 | Msa0773180:CDS |
| TCTGATGGATCTTATCGTGT+TGG | 0.517954 | 5_2:+47882141 | Msa0773180:CDS |
| ATCAGACCTGGAAACTGCAT+TGG | 0.519949 | 5_2:-47882124 | None:intergenic |
| TGTTGTTGGTGGTAAAGTTG+AGG | 0.523787 | 5_2:+47881703 | Msa0773180:CDS |
| ACTTCCCAAATGAGATATCA+AGG | 0.531834 | 5_2:-47880458 | None:intergenic |
| TCTGGTGAAGTTCATGCTAT+GGG | 0.533120 | 5_2:+47881584 | Msa0773180:CDS |
| ATCTGGTGAAGTTCATGCTA+TGG | 0.538761 | 5_2:+47881583 | Msa0773180:CDS |
| GTTCAAGGCATAGATGCATC+TGG | 0.559805 | 5_2:+47881566 | Msa0773180:CDS |
| TATCTCATTTGGGAAGTGCT+GGG | 0.570964 | 5_2:+47880464 | Msa0773180:CDS |
| TGAGTTAGTTTGTTTGGATG+AGG | 0.579755 | 5_2:+47881670 | Msa0773180:CDS |
| ATGGATCTTATCGTGTTGGG+AGG | 0.582289 | 5_2:+47882145 | Msa0773180:CDS |
| GCATTGCAAAGTTAAGGTCA+AGG | 0.583811 | 5_2:+47881822 | Msa0773180:intron |
| AATGTTGCTGGAGCGCAGTA+AGG | 0.593118 | 5_2:+47882353 | Msa0773180:CDS |
| TAAACTTGTGGCTGATGCGA+AGG | 0.595950 | 5_2:+47881921 | Msa0773180:CDS |
| GTTAAGGTCAAGGTTAGTGA+TGG | 0.600489 | 5_2:+47881832 | Msa0773180:intron |
| AATGTGCAGGGTGAAAATGC+TGG | 0.609505 | 5_2:+47882036 | Msa0773180:intron |
| ATGGTGCCTGCAGATTTGCT+TGG | 0.613644 | 5_2:+47882443 | Msa0773180:three_prime_UTR |
| ACGATAAGATCCATCAGACC+TGG | 0.615025 | 5_2:-47882136 | None:intergenic |
| TTGGTTGAAGGTGCTGAATG+TGG | 0.615128 | 5_2:+47881728 | Msa0773180:CDS |
| CAAAGAAAGATGTTATCCAA+AGG | 0.625682 | 5_2:+47882792 | Msa0773180:three_prime_UTR |
| TGGATCTTATCGTGTTGGGA+GGG | 0.627901 | 5_2:+47882146 | Msa0773180:CDS |
| AAGCGTGTGATTGCATGCAT+TGG | 0.633443 | 5_2:+47882911 | Msa0773180:three_prime_UTR |
| TGGAACATCTGACAGTGCTG+AGG | 0.648334 | 5_2:+47882611 | Msa0773180:three_prime_UTR |
| CTCTCCTTGAATGCAAGTGT+AGG | 0.660737 | 5_2:-47882759 | None:intergenic |
| GAAGTCTTGTGCTAAACTTG+TGG | 0.661912 | 5_2:+47881909 | Msa0773180:CDS |
| GAACCCTTGACAAAATCATG+AGG | 0.662383 | 5_2:-47882404 | None:intergenic |
| ATAAATTCATCCTCTAAACA+GGG | 0.674916 | 5_2:-47881620 | None:intergenic |
| AACCCTTGACAAAATCATGA+GGG | 0.677261 | 5_2:-47882403 | None:intergenic |
| GTAAGGTGAAATGTTGTTCG+GGG | 0.721248 | 5_2:+47882370 | Msa0773180:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAAGAAATCATT+GGG | - | chr5_2:47880855-47880874 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTAAAGAAATCAT+TGG | - | chr5_2:47880856-47880875 | None:intergenic | 10.0% |
| !! | ATCTATAAGAACATTATAAA+CGG | + | chr5_2:47880879-47880898 | Msa0773180:intron | 15.0% |
| !! | ATTTCACTTTAAGTCATTTA+AGG | - | chr5_2:47880981-47881000 | None:intergenic | 20.0% |
| !!! | ATATTTTTTGGTTTCTTTCT+CGG | - | chr5_2:47881207-47881226 | None:intergenic | 20.0% |
| !! | GTAACATTGATAAATCATAA+AGG | + | chr5_2:47881253-47881272 | Msa0773180:intron | 20.0% |
| !!! | TAAAATTATTGAAGTGTTTG+AGG | + | chr5_2:47882182-47882201 | Msa0773180:CDS | 20.0% |
| !! | TTACTATTTATTTACACCTT+TGG | - | chr5_2:47882811-47882830 | None:intergenic | 20.0% |
| !! | TGTAAATAAATAGTAAAGCA+GGG | + | chr5_2:47882815-47882834 | Msa0773180:three_prime_UTR | 20.0% |
| ! | AAGAACTCAAGATAAATAGA+AGG | + | chr5_2:47880608-47880627 | Msa0773180:intron | 25.0% |
| !! | TATAGTTGATGTAACACTAT+GGG | - | chr5_2:47880661-47880680 | None:intergenic | 25.0% |
| !! | ATATAGTTGATGTAACACTA+TGG | - | chr5_2:47880662-47880681 | None:intergenic | 25.0% |
| ! | ACATTGTGTTGAAAGATAAA+AGG | - | chr5_2:47880774-47880793 | None:intergenic | 25.0% |
| !! | TTCAAAACTGACGTTTTATA+TGG | - | chr5_2:47880941-47880960 | None:intergenic | 25.0% |
| ! | TTTGTATAATTGTCATGTGT+TGG | - | chr5_2:47881098-47881117 | None:intergenic | 25.0% |
| ! | AATAACTCGATATAGAGAAT+TGG | - | chr5_2:47881161-47881180 | None:intergenic | 25.0% |
| !!! | TATTTTTTGGTTTCTTTCTC+GGG | - | chr5_2:47881206-47881225 | None:intergenic | 25.0% |
| !! | TCAAAAATGATTTGGACATT+TGG | - | chr5_2:47881399-47881418 | None:intergenic | 25.0% |
| ! | TAAGGATCTCAAAAATGATT+TGG | - | chr5_2:47881407-47881426 | None:intergenic | 25.0% |
| ! | AATACAAACCACAATTTCAA+GGG | - | chr5_2:47881443-47881462 | None:intergenic | 25.0% |
| ! | AAATACAAACCACAATTTCA+AGG | - | chr5_2:47881444-47881463 | None:intergenic | 25.0% |
| ! | ATAAATTCATCCTCTAAACA+GGG | - | chr5_2:47881623-47881642 | None:intergenic | 25.0% |
| ! | AATAAATTCATCCTCTAAAC+AGG | - | chr5_2:47881624-47881643 | None:intergenic | 25.0% |
| !! | AACTCATCAATTGTTTTCTT+CGG | - | chr5_2:47881656-47881675 | None:intergenic | 25.0% |
| !!! | AATTGATGAGTTAGTTTGTT+TGG | + | chr5_2:47881664-47881683 | Msa0773180:CDS | 25.0% |
| ! | TTTGATTACACTACTTTACT+TGG | - | chr5_2:47881972-47881991 | None:intergenic | 25.0% |
| !!! | ATTTCTCATTTTTGTTTTCC+AGG | + | chr5_2:47882292-47882311 | Msa0773180:intron | 25.0% |
| !!! | TTTCTCATTTTTGTTTTCCA+GGG | + | chr5_2:47882293-47882312 | Msa0773180:intron | 25.0% |
| ! | TGGTAAAAAGAAATTGACTA+AGG | + | chr5_2:47882463-47882482 | Msa0773180:three_prime_UTR | 25.0% |
| ! | AAAAAGAAATTGACTAAGGT+TGG | + | chr5_2:47882467-47882486 | Msa0773180:three_prime_UTR | 25.0% |
| !!! | CATGACATAATTGAGTTTTT+TGG | + | chr5_2:47882492-47882511 | Msa0773180:three_prime_UTR | 25.0% |
| !! | GGTTTAAAACTGTCATATAT+AGG | + | chr5_2:47882513-47882532 | Msa0773180:three_prime_UTR | 25.0% |
| ! | GTGTAAATAAATAGTAAAGC+AGG | + | chr5_2:47882814-47882833 | Msa0773180:three_prime_UTR | 25.0% |
| ATGTCCTTGATATCTCATTT+GGG | + | chr5_2:47880454-47880473 | Msa0773180:CDS | 30.0% | |
| ! | TATTGTGAAAGAGATGGATT+TGG | - | chr5_2:47880539-47880558 | None:intergenic | 30.0% |
| ! | TCTAGCTATTGACTACAAAA+TGG | + | chr5_2:47880580-47880599 | Msa0773180:intron | 30.0% |
| GAAGGTAAATGATAAAGCTA+CGG | + | chr5_2:47880626-47880645 | Msa0773180:intron | 30.0% | |
| !!! | TTTAAGGTTGTTTTTGGTTC+TGG | - | chr5_2:47881052-47881071 | None:intergenic | 30.0% |
| AGAACCAAAAACAACCTTAA+AGG | + | chr5_2:47881051-47881070 | Msa0773180:intron | 30.0% | |
| GAACCAAAAACAACCTTAAA+GGG | + | chr5_2:47881052-47881071 | Msa0773180:intron | 30.0% | |
| !!! | AATCCCTTTAAGGTTGTTTT+TGG | - | chr5_2:47881058-47881077 | None:intergenic | 30.0% |
| CATTGCATTTAATCCCTTTA+AGG | - | chr5_2:47881068-47881087 | None:intergenic | 30.0% | |
| GACATTTGGAAAATAGGATT+TGG | - | chr5_2:47881385-47881404 | None:intergenic | 30.0% | |
| GATTTGGACATTTGGAAAAT+AGG | - | chr5_2:47881391-47881410 | None:intergenic | 30.0% | |
| AAGGGATTATGACTACATTA+AGG | - | chr5_2:47881425-47881444 | None:intergenic | 30.0% | |
| TTTAACGATTTCAAATGTGC+AGG | + | chr5_2:47882023-47882042 | Msa0773180:intron | 30.0% | |
| TTAACGATTTCAAATGTGCA+GGG | + | chr5_2:47882024-47882043 | Msa0773180:intron | 30.0% | |
| ! | ATTATTGAAGTGTTTGAGGA+TGG | + | chr5_2:47882186-47882205 | Msa0773180:CDS | 30.0% |
| ! | TTATTGAAGTGTTTGAGGAT+GGG | + | chr5_2:47882187-47882206 | Msa0773180:CDS | 30.0% |
| TGCAAATTCTTCAAATGTCA+AGG | + | chr5_2:47882212-47882231 | Msa0773180:CDS | 30.0% | |
| AATTCTTCAAATGTCAAGGT+TGG | + | chr5_2:47882216-47882235 | Msa0773180:intron | 30.0% | |
| ! | AATAAGGATGATAATGTTGC+TGG | + | chr5_2:47882341-47882360 | Msa0773180:CDS | 30.0% |
| ! | TGCTCAATTTTTCTGTTCAA+AGG | + | chr5_2:47882686-47882705 | Msa0773180:three_prime_UTR | 30.0% |
| ! | GCTCAATTTTTCTGTTCAAA+GGG | + | chr5_2:47882687-47882706 | Msa0773180:three_prime_UTR | 30.0% |
| ATTCAATGTGATTGCAGAAA+TGG | + | chr5_2:47882730-47882749 | Msa0773180:three_prime_UTR | 30.0% | |
| CAAAGAAAGATGTTATCCAA+AGG | + | chr5_2:47882792-47882811 | Msa0773180:three_prime_UTR | 30.0% | |
| ACTTCCCAAATGAGATATCA+AGG | - | chr5_2:47880461-47880480 | None:intergenic | 35.0% | |
| GAGTTCTATTGTGAAAGAGA+TGG | - | chr5_2:47880545-47880564 | None:intergenic | 35.0% | |
| AACTATATTCCCACTGCATA+AGG | + | chr5_2:47880674-47880693 | Msa0773180:intron | 35.0% | |
| CATAAGGAAAGACATCTTTC+AGG | + | chr5_2:47880690-47880709 | Msa0773180:intron | 35.0% | |
| !!! | TGTTTTTGGTTCTGGTACAA+AGG | - | chr5_2:47881044-47881063 | None:intergenic | 35.0% |
| GATATAGAGAATTGGAGCAT+TGG | - | chr5_2:47881153-47881172 | None:intergenic | 35.0% | |
| GTCATAATCCCTTGAAATTG+TGG | + | chr5_2:47881432-47881451 | Msa0773180:intron | 35.0% | |
| !! | TGAGTTAGTTTGTTTGGATG+AGG | + | chr5_2:47881670-47881689 | Msa0773180:CDS | 35.0% |
| ACTCTGCATATAGTTGCAAT+AGG | + | chr5_2:47881752-47881771 | Msa0773180:intron | 35.0% | |
| ATTATTGCAATGGCTGTGTT+AGG | + | chr5_2:47881800-47881819 | Msa0773180:intron | 35.0% | |
| ! | TGTTAGGCATTGCAAAGTTA+AGG | + | chr5_2:47881816-47881835 | Msa0773180:intron | 35.0% |
| !! | ATGAGATTTTTCAGCTCAGA+TGG | - | chr5_2:47882069-47882088 | None:intergenic | 35.0% |
| TCTGAGCTGAAAAATCTCAT+TGG | + | chr5_2:47882069-47882088 | Msa0773180:CDS | 35.0% | |
| ! | TATTGAAGTGTTTGAGGATG+GGG | + | chr5_2:47882188-47882207 | Msa0773180:CDS | 35.0% |
| !!! | TTTTGTTTTCCAGGGAAATG+TGG | + | chr5_2:47882301-47882320 | Msa0773180:intron | 35.0% |
| CAGTAAGGTGAAATGTTGTT+CGG | + | chr5_2:47882368-47882387 | Msa0773180:exon | 35.0% | |
| AGTAAGGTGAAATGTTGTTC+GGG | + | chr5_2:47882369-47882388 | Msa0773180:exon | 35.0% | |
| AACCCTTGACAAAATCATGA+GGG | - | chr5_2:47882406-47882425 | None:intergenic | 35.0% | |
| ! | TTTTTACCAAGCAAATCTGC+AGG | - | chr5_2:47882452-47882471 | None:intergenic | 35.0% |
| TAGGTGTGAGAAAAAGACTT+TGG | + | chr5_2:47882532-47882551 | Msa0773180:three_prime_UTR | 35.0% | |
| AGGTGTGAGAAAAAGACTTT+GGG | + | chr5_2:47882533-47882552 | Msa0773180:three_prime_UTR | 35.0% | |
| ATCAGAGACACAACAAGAAA+AGG | + | chr5_2:47882573-47882592 | Msa0773180:three_prime_UTR | 35.0% | |
| !! | CAAGAAAAGGAAGAAGTGTT+TGG | + | chr5_2:47882586-47882605 | Msa0773180:three_prime_UTR | 35.0% |
| ! | ATCAAGCTGCATTTTCAATG+AGG | + | chr5_2:47882652-47882671 | Msa0773180:three_prime_UTR | 35.0% |
| ! | TTTTCTGTTCAAAGGGTCAA+AGG | + | chr5_2:47882694-47882713 | Msa0773180:three_prime_UTR | 35.0% |
| ! | ATCACACGCTTATTTGTTGA+AGG | - | chr5_2:47882902-47882921 | None:intergenic | 35.0% |
| ! | ATATCTCATTTGGGAAGTGC+TGG | + | chr5_2:47880463-47880482 | Msa0773180:CDS | 40.0% |
| !! | TATCTCATTTGGGAAGTGCT+GGG | + | chr5_2:47880464-47880483 | Msa0773180:CDS | 40.0% |
| AACCTTGTTGCATATGCAGT+TGG | + | chr5_2:47880513-47880532 | Msa0773180:intron | 40.0% | |
| TTTCACAATAGAACTCGTGC+AGG | + | chr5_2:47880549-47880568 | Msa0773180:intron | 40.0% | |
| GATGTCTTTCCTTATGCAGT+GGG | - | chr5_2:47880686-47880705 | None:intergenic | 40.0% | |
| AGATGTCTTTCCTTATGCAG+TGG | - | chr5_2:47880687-47880706 | None:intergenic | 40.0% | |
| TGTTTCTTTCCAGTCCCAAT+TGG | + | chr5_2:47880802-47880821 | Msa0773180:intron | 40.0% | |
| TTGTCAAGACAACGCCAATT+GGG | - | chr5_2:47880819-47880838 | None:intergenic | 40.0% | |
| ATTGTCAAGACAACGCCAAT+TGG | - | chr5_2:47880820-47880839 | None:intergenic | 40.0% | |
| !! | TAGAGAATTGGAGCATTGGA+AGG | - | chr5_2:47881149-47881168 | None:intergenic | 40.0% |
| TGGTTTCTTTCTCGGGTTTA+GGG | - | chr5_2:47881199-47881218 | None:intergenic | 40.0% | |
| TTGGTTTCTTTCTCGGGTTT+AGG | - | chr5_2:47881200-47881219 | None:intergenic | 40.0% | |
| CTAGATTCTTGGATTGTGAC+TGG | - | chr5_2:47881358-47881377 | None:intergenic | 40.0% | |
| ! | GATTTGGAGTGCTAGATTCT+TGG | - | chr5_2:47881369-47881388 | None:intergenic | 40.0% |
| ! | CACTCAGTTTTTCATTCGTG+TGG | + | chr5_2:47881496-47881515 | Msa0773180:intron | 40.0% |
| !! | ATATGCAGACTTGCTGTTCA+AGG | + | chr5_2:47881551-47881570 | Msa0773180:intron | 40.0% |
| ATCTGGTGAAGTTCATGCTA+TGG | + | chr5_2:47881583-47881602 | Msa0773180:CDS | 40.0% | |
| TCTGGTGAAGTTCATGCTAT+GGG | + | chr5_2:47881584-47881603 | Msa0773180:CDS | 40.0% | |
| !!! | GAGGAAGCTGTTTTTGTTGT+TGG | + | chr5_2:47881689-47881708 | Msa0773180:CDS | 40.0% |
| !!! | GAAGCTGTTTTTGTTGTTGG+TGG | + | chr5_2:47881692-47881711 | Msa0773180:CDS | 40.0% |
| !! | TGTTGTTGGTGGTAAAGTTG+AGG | + | chr5_2:47881703-47881722 | Msa0773180:CDS | 40.0% |
| !! | GTTGTTGGTGGTAAAGTTGA+GGG | + | chr5_2:47881704-47881723 | Msa0773180:CDS | 40.0% |
| ATTGCAATAATATGACCCGG+AGG | - | chr5_2:47881791-47881810 | None:intergenic | 40.0% | |
| TCCGGGTCATATTATTGCAA+TGG | + | chr5_2:47881790-47881809 | Msa0773180:intron | 40.0% | |
| GCCATTGCAATAATATGACC+CGG | - | chr5_2:47881794-47881813 | None:intergenic | 40.0% | |
| GCATTGCAAAGTTAAGGTCA+AGG | + | chr5_2:47881822-47881841 | Msa0773180:intron | 40.0% | |
| GTTAAGGTCAAGGTTAGTGA+TGG | + | chr5_2:47881832-47881851 | Msa0773180:intron | 40.0% | |
| ! | GAAGTCTTGTGCTAAACTTG+TGG | + | chr5_2:47881909-47881928 | Msa0773180:CDS | 40.0% |
| ATTCATCCAATGCAGTTTCC+AGG | + | chr5_2:47882118-47882137 | Msa0773180:CDS | 40.0% | |
| ! | TCTGATGGATCTTATCGTGT+TGG | + | chr5_2:47882141-47882160 | Msa0773180:CDS | 40.0% |
| ! | CTGATGGATCTTATCGTGTT+GGG | + | chr5_2:47882142-47882161 | Msa0773180:CDS | 40.0% |
| AGGTTCTGCTGCATTGAATA+AGG | + | chr5_2:47882325-47882344 | Msa0773180:CDS | 40.0% | |
| GTAAGGTGAAATGTTGTTCG+GGG | + | chr5_2:47882370-47882389 | Msa0773180:exon | 40.0% | |
| ! | TGACCCTCATGATTTTGTCA+AGG | + | chr5_2:47882400-47882419 | Msa0773180:three_prime_UTR | 40.0% |
| ! | GACCCTCATGATTTTGTCAA+GGG | + | chr5_2:47882401-47882420 | Msa0773180:three_prime_UTR | 40.0% |
| GAACCCTTGACAAAATCATG+AGG | - | chr5_2:47882407-47882426 | None:intergenic | 40.0% | |
| !! | TTCTGTTTTGTTGCCTGAGA+TGG | + | chr5_2:47882424-47882443 | Msa0773180:three_prime_UTR | 40.0% |
| GGTGTGAGAAAAAGACTTTG+GGG | + | chr5_2:47882534-47882553 | Msa0773180:three_prime_UTR | 40.0% | |
| !! | AAAGGAAGAAGTGTTTGGCT+TGG | + | chr5_2:47882591-47882610 | Msa0773180:three_prime_UTR | 40.0% |
| TTCACCTACACTTGCATTCA+AGG | + | chr5_2:47882755-47882774 | Msa0773180:three_prime_UTR | 40.0% | |
| GTTCAAGGCATAGATGCATC+TGG | + | chr5_2:47881566-47881585 | Msa0773180:CDS | 45.0% | |
| ATGCTATGGGTTTGCGTGTT+AGG | + | chr5_2:47881597-47881616 | Msa0773180:CDS | 45.0% | |
| ! | AAAGTTGAGGGCTTGGTTGA+AGG | + | chr5_2:47881716-47881735 | Msa0773180:CDS | 45.0% |
| !! | TTGGTTGAAGGTGCTGAATG+TGG | + | chr5_2:47881728-47881747 | Msa0773180:CDS | 45.0% |
| TAAACTTGTGGCTGATGCGA+AGG | + | chr5_2:47881921-47881940 | Msa0773180:CDS | 45.0% | |
| AATGTGCAGGGTGAAAATGC+TGG | + | chr5_2:47882036-47882055 | Msa0773180:intron | 45.0% | |
| ATCAGACCTGGAAACTGCAT+TGG | - | chr5_2:47882127-47882146 | None:intergenic | 45.0% | |
| AATGCAGTTTCCAGGTCTGA+TGG | + | chr5_2:47882126-47882145 | Msa0773180:CDS | 45.0% | |
| ACGATAAGATCCATCAGACC+TGG | - | chr5_2:47882139-47882158 | None:intergenic | 45.0% | |
| ATGGATCTTATCGTGTTGGG+AGG | + | chr5_2:47882145-47882164 | Msa0773180:CDS | 45.0% | |
| TGGATCTTATCGTGTTGGGA+GGG | + | chr5_2:47882146-47882165 | Msa0773180:CDS | 45.0% | |
| ! | GTTTTCCAGGGAAATGTGGA+AGG | + | chr5_2:47882305-47882324 | Msa0773180:intron | 45.0% |
| CTCTCCTTGAATGCAAGTGT+AGG | - | chr5_2:47882762-47882781 | None:intergenic | 45.0% | |
| AAGCGTGTGATTGCATGCAT+TGG | + | chr5_2:47882911-47882930 | Msa0773180:three_prime_UTR | 45.0% | |
| !!! | TTTGATTTATTTATATTTTT+TGG | - | chr5_2:47881219-47881238 | None:intergenic | 5.0% |
| GGCCAACTGCATATGCAACA+AGG | - | chr5_2:47880518-47880537 | None:intergenic | 50.0% | |
| AAGACAACGCCAATTGGGAC+TGG | - | chr5_2:47880814-47880833 | None:intergenic | 50.0% | |
| ! | GCATTGGAAGGCTTTGATCG+AGG | - | chr5_2:47881137-47881156 | None:intergenic | 50.0% |
| TGGTGGTAAAGTTGAGGGCT+TGG | + | chr5_2:47881709-47881728 | Msa0773180:CDS | 50.0% | |
| CAGAACCTTCCACATTTCCC+TGG | - | chr5_2:47882313-47882332 | None:intergenic | 50.0% | |
| AATGTTGCTGGAGCGCAGTA+AGG | + | chr5_2:47882353-47882372 | Msa0773180:CDS | 50.0% | |
| AAATCTGCAGGCACCATCTC+AGG | - | chr5_2:47882440-47882459 | None:intergenic | 50.0% | |
| ! | ATGGTGCCTGCAGATTTGCT+TGG | + | chr5_2:47882443-47882462 | Msa0773180:three_prime_UTR | 50.0% |
| TGGAACATCTGACAGTGCTG+AGG | + | chr5_2:47882611-47882630 | Msa0773180:three_prime_UTR | 50.0% | |
| GCGTGTTAGGCCCTGTTTAG+AGG | + | chr5_2:47881610-47881629 | Msa0773180:CDS | 55.0% | |
| !!! | AGGAGCGTTTTAGCTGCCTC+CGG | + | chr5_2:47881772-47881791 | Msa0773180:intron | 55.0% |
| TCGTGTTGGGAGGGTCTGTA+TGG | + | chr5_2:47882155-47882174 | Msa0773180:CDS | 55.0% | |
| !!! | GGAGCGTTTTAGCTGCCTCC+GGG | + | chr5_2:47881773-47881792 | Msa0773180:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 47880454 | 47883052 | 47880454 | ID=Msa0773180;Name=Msa0773180 |
| chr5_2 | mRNA | 47880454 | 47883052 | 47880454 | ID=Msa0773180-mRNA-1;Parent=Msa0773180;Name=Msa0773180-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.4|0.8|1|1|5|679|193 |
| chr5_2 | exon | 47880454 | 47880485 | 47880454 | ID=Msa0773180-mRNA-1:exon:14310;Parent=Msa0773180-mRNA-1 |
| chr5_2 | exon | 47881559 | 47881749 | 47881559 | ID=Msa0773180-mRNA-1:exon:14311;Parent=Msa0773180-mRNA-1 |
| chr5_2 | exon | 47881833 | 47881942 | 47881833 | ID=Msa0773180-mRNA-1:exon:14312;Parent=Msa0773180-mRNA-1 |
| chr5_2 | exon | 47882045 | 47882233 | 47882045 | ID=Msa0773180-mRNA-1:exon:14313;Parent=Msa0773180-mRNA-1 |
| chr5_2 | exon | 47882314 | 47883052 | 47882314 | ID=Msa0773180-mRNA-1:exon:14314;Parent=Msa0773180-mRNA-1 |
| chr5_2 | CDS | 47880454 | 47880485 | 47880454 | ID=Msa0773180-mRNA-1:cds;Parent=Msa0773180-mRNA-1 |
| chr5_2 | CDS | 47881559 | 47881749 | 47881559 | ID=Msa0773180-mRNA-1:cds;Parent=Msa0773180-mRNA-1 |
| chr5_2 | CDS | 47881833 | 47881942 | 47881833 | ID=Msa0773180-mRNA-1:cds;Parent=Msa0773180-mRNA-1 |
| chr5_2 | CDS | 47882045 | 47882233 | 47882045 | ID=Msa0773180-mRNA-1:cds;Parent=Msa0773180-mRNA-1 |
| chr5_2 | CDS | 47882314 | 47882373 | 47882314 | ID=Msa0773180-mRNA-1:cds;Parent=Msa0773180-mRNA-1 |
| chr5_2 | three_prime_UTR | 47882374 | 47883052 | 47882374 | ID=Msa0773180-mRNA-1:three_prime_utr;Parent=Msa0773180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
