AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417270 MtrunA17_Chr3g0114681 82.800 500 22 5 1 437 1 499 0.0 702
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417270 AT1G44780.2 46.914 405 179 7 10 386 17 413 5.06e-99 304
Msa0417270 AT1G44780.1 46.667 405 181 7 10 386 17 414 1.90e-98 303
Msa0417270 AT4G08310.1 44.337 415 179 8 16 384 34 442 1.05e-87 276

Find 106 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTGCTCGAGAAAGATTT+AGG 0.188651 3_2:+64375198 Msa0417270:CDS
TTTACTTATAAACTTCTTAA+AGG 0.192372 3_2:-64377578 None:intergenic
CAATCGGTGCTGTGTTTATT+AGG 0.197249 3_2:-64374900 None:intergenic
CCCATTGCCTTCTGCTATCT+TGG 0.207283 3_2:-64377246 None:intergenic
GGTATTATATTCGTTGAAAT+TGG 0.207709 3_2:+64381321 Msa0417270:three_prime_UTR
TCTTCTGATGCTGCTTTATC+AGG 0.212935 3_2:-64377961 None:intergenic
TGAATCTTCCACAATTAATT+AGG 0.227144 3_2:+64380934 Msa0417270:three_prime_UTR
TTTAATAGCTTTCTTAATTA+GGG 0.269138 3_2:-64377291 None:intergenic
TAGGGTACACAGTACGATTT+CGG 0.291587 3_2:-64374881 None:intergenic
AGGGTACACAGTACGATTTC+GGG 0.302755 3_2:-64374880 None:intergenic
TAGAAATCAAAGAAGTAAAT+AGG 0.302925 3_2:+64379307 Msa0417270:intron
TCCACTGGAATCTTGGGCTT+TGG 0.303298 3_2:-64379429 None:intergenic
GGGTAGTCTTCGCCGATTAT+TGG 0.304072 3_2:+64377519 Msa0417270:CDS
ACTAGTTTCCACTGGAATCT+TGG 0.310141 3_2:-64379436 None:intergenic
CAGATTCTGCAATAATTAAA+AGG 0.315876 3_2:+64380911 Msa0417270:three_prime_UTR
TCTGAGGAGGACGGGGAAAA+AGG 0.327743 3_2:+64377083 Msa0417270:CDS
CTAGTTTCCACTGGAATCTT+GGG 0.332663 3_2:-64379435 None:intergenic
GGAGTCTGCATCTTGCCTTT+TGG 0.346161 3_2:-64377877 None:intergenic
CGGACAACTAATTAAAGAAT+TGG 0.355478 3_2:+64378496 Msa0417270:CDS
TTAGCACTTTCTGCAGGTTC+CGG 0.360550 3_2:-64377730 None:intergenic
TTACTTATAAACTTCTTAAA+GGG 0.364968 3_2:-64377577 None:intergenic
ATTAATGTCTTCTGAAGTTC+CGG 0.373428 3_2:+64377711 Msa0417270:CDS
TAAGATCTTCCTCCAATAAT+CGG 0.374296 3_2:-64377531 None:intergenic
TTCTTAATTAGGGTCTCATT+TGG 0.378832 3_2:-64377281 None:intergenic
GGAATCTTGGGCTTTGGTGG+TGG 0.379600 3_2:-64379423 None:intergenic
ATCTTGGGCTTTGGTGGTGG+AGG 0.389017 3_2:-64379420 None:intergenic
AATCGGTGCTGTGTTTATTA+GGG 0.395344 3_2:-64374899 None:intergenic
TTGTGTCAAGTACACGTAGA+AGG 0.395529 3_2:+64379376 Msa0417270:CDS
GATTGCTCGAGAAAGATTTA+GGG 0.400346 3_2:+64375199 Msa0417270:CDS
ACTGGAATCTTGGGCTTTGG+TGG 0.401139 3_2:-64379426 None:intergenic
TGATACTAAAGCAACTAAAA+AGG 0.402536 3_2:+64377774 Msa0417270:CDS
AGGTCTGCTTAAAGAACAAA+AGG 0.410447 3_2:+64377208 Msa0417270:intron
GTCCTCCTCAGACGTCTTTG+TGG 0.425698 3_2:-64377072 None:intergenic
TGATTTCAGAAATGTAACTT+TGG 0.426248 3_2:+64377498 Msa0417270:intron
GATTTCAGAAATGTAACTTT+GGG 0.430263 3_2:+64377499 Msa0417270:intron
TGAAGTGGAGTTTAGCAGTT+GGG 0.437213 3_2:+64374830 Msa0417270:five_prime_UTR
TTATTTCTGCCACAGTGCTT+AGG 0.445202 3_2:+64377026 Msa0417270:intron
AAACGGAATTGATTTGTTCA+AGG 0.446172 3_2:+64381300 Msa0417270:three_prime_UTR
AGCAGGTCCCTGAAAACAAA+CGG 0.472188 3_2:+64378471 Msa0417270:CDS
CGTTTACTGTACACAGGAGT+TGG 0.472645 3_2:-64378298 None:intergenic
GAGGATAGCAGTGATGATGA+TGG 0.475078 3_2:+64379549 Msa0417270:CDS
CCAAGATAGCAGAAGGCAAT+GGG 0.479554 3_2:+64377246 Msa0417270:CDS
TGCCTCATTTCAATCGTAAG+TGG 0.485571 3_2:+64381200 Msa0417270:intron
CACAATTAATTAGGAAGTGA+TGG 0.488750 3_2:+64380943 Msa0417270:three_prime_UTR
TAGGAAGAAGGCACGGGCCA+AGG 0.492533 3_2:+64379326 Msa0417270:CDS
CCACAGTGCTTAGGAGAGGC+TGG 0.495291 3_2:+64377035 Msa0417270:intron
CAAAGACGTCTGAGGAGGAC+GGG 0.495426 3_2:+64377075 Msa0417270:CDS
AGTATTCTCTGCTGACGAAT+GGG 0.496613 3_2:-64378031 None:intergenic
ATCAATACCCTCAAGTTCCT+TGG 0.499914 3_2:-64379343 None:intergenic
TCTTTGCCACTAGTTTCCAC+TGG 0.500056 3_2:-64379444 None:intergenic
ACAGTATGCTAAACTCGAAA+CGG 0.504847 3_2:+64381283 Msa0417270:three_prime_UTR
AAATCTGTTATTAAAGCATG+TGG 0.508183 3_2:+64378334 Msa0417270:CDS
AGATGAAGAAGATGAAGAAG+AGG 0.513270 3_2:+64379527 Msa0417270:CDS
GTGAAGTGGAGTTTAGCAGT+TGG 0.513930 3_2:+64374829 Msa0417270:five_prime_UTR
CAAAGAAGTAAATAGGAAGA+AGG 0.517613 3_2:+64379314 Msa0417270:CDS
ATCGAAGTGTTGGAGTGAAG+TGG 0.525787 3_2:+64374815 None:intergenic
GTGAGAAACGCGAGAGCGCA+TGG 0.525813 3_2:-64375041 None:intergenic
CCAAACCTAAAATATCGATC+TGG 0.531564 3_2:+64381427 Msa0417270:three_prime_UTR
GTCTTCAAATCCATCTGAGA+AGG 0.532832 3_2:+64378544 Msa0417270:CDS
CATCACTTCCTAATTAATTG+TGG 0.533800 3_2:-64380942 None:intergenic
GAGAGTGAAGAATTTAATGC+GGG 0.538623 3_2:+64379576 Msa0417270:CDS
ACCAAGATAGCAGAAGGCAA+TGG 0.540066 3_2:+64377245 Msa0417270:CDS
GGTCTGCTTAAAGAACAAAA+GGG 0.541386 3_2:+64377209 Msa0417270:intron
GATAATGACAACGATGATGA+AGG 0.542203 3_2:+64379480 Msa0417270:CDS
TAGTATTCTCTGCTGACGAA+TGG 0.542456 3_2:-64378032 None:intergenic
GCAGGTCCCTGAAAACAAAC+GGG 0.543917 3_2:+64378472 Msa0417270:CDS
TAGTCTTCGCCGATTATTGG+AGG 0.546979 3_2:+64377522 Msa0417270:CDS
TCTGATTCATGCAGATGAAG+AGG 0.550672 3_2:+64380870 Msa0417270:intron
GGCACGGGCCAAGGAACTTG+AGG 0.552578 3_2:+64379335 Msa0417270:CDS
AGAGAGAACATGGCAGAAGA+TGG 0.555247 3_2:+64374965 Msa0417270:exon
ACAACTAATTAAAGAATTGG+AGG 0.557721 3_2:+64378499 Msa0417270:CDS
AAGAGGACAGTGATTGAACT+CGG 0.562341 3_2:+64380887 Msa0417270:exon
TGAAGAAGATGAAGAAGAGG+AGG 0.566614 3_2:+64379530 Msa0417270:CDS
TTCAGATGAAGAGAGTGAAG+AGG 0.569278 3_2:+64377822 Msa0417270:CDS
AGTAAATAGGAAGAAGGCAC+GGG 0.570160 3_2:+64379320 Msa0417270:CDS
TGTGTCAAGTACACGTAGAA+GGG 0.572023 3_2:+64379377 Msa0417270:CDS
ACAAAGACGTCTGAGGAGGA+CGG 0.573683 3_2:+64377074 Msa0417270:CDS
AAGTAAATAGGAAGAAGGCA+CGG 0.576297 3_2:+64379319 Msa0417270:CDS
GCACGGGCCAAGGAACTTGA+GGG 0.580652 3_2:+64379336 Msa0417270:CDS
AGAGAGAAACAGAGAGAACA+TGG 0.581702 3_2:+64374955 Msa0417270:exon
CAAGAAACCAAGATAGCAGA+AGG 0.585200 3_2:+64377239 Msa0417270:CDS
TCTTCAAATCCATCTGAGAA+GGG 0.588082 3_2:+64378545 Msa0417270:CDS
GAGGAAATACTATCTAGAGA+AGG 0.607482 3_2:+64378518 Msa0417270:CDS
GTCTGCTTAAAGAACAAAAG+GGG 0.608849 3_2:+64377210 Msa0417270:CDS
TATAAGTAAAGAGCTTGATG+AGG 0.612914 3_2:+64377591 Msa0417270:CDS
TGAGAGTGAAGAATTTAATG+CGG 0.614155 3_2:+64379575 Msa0417270:CDS
AAAGACGTCTGAGGAGGACG+GGG 0.615894 3_2:+64377076 Msa0417270:CDS
TTATTAAAGCATGTGGGATG+AGG 0.618988 3_2:+64378341 Msa0417270:CDS
GTCCCTGAAAACAAACGGGA+CGG 0.623725 3_2:+64378476 Msa0417270:CDS
CATACTCTGCATTAGCCTTG+AGG 0.627628 3_2:-64377328 None:intergenic
TATCAAACAATCTTTAGACA+AGG 0.630540 3_2:+64375257 Msa0417270:CDS
TCTGCCACAGTGCTTAGGAG+AGG 0.635941 3_2:+64377031 Msa0417270:intron
AATAGTGATGCAGAAGACGA+TGG 0.643756 3_2:+64377985 Msa0417270:CDS
TCCTGTGTACAGTAAACGTG+TGG 0.644428 3_2:+64378303 Msa0417270:CDS
AGAGGACAGTGATTGAACTC+GGG 0.652999 3_2:+64380888 Msa0417270:exon
TCTGCTTAAAGAACAAAAGG+GGG 0.658439 3_2:+64377211 Msa0417270:CDS
TGATGCCACAAAGACGTCTG+AGG 0.660915 3_2:+64377067 Msa0417270:CDS
ACCAAAGCCCAAGATTCCAG+TGG 0.665045 3_2:+64379428 Msa0417270:CDS
TGCCACAAAGACGTCTGAGG+AGG 0.671550 3_2:+64377070 Msa0417270:CDS
TCCACACGTTTACTGTACAC+AGG 0.676303 3_2:-64378304 None:intergenic
AATCTGTTATTAAAGCATGT+GGG 0.677116 3_2:+64378335 Msa0417270:CDS
GTCAGCAGAGAATACTACCA+AGG 0.702422 3_2:+64378038 Msa0417270:CDS
AGGCAAAGAAAATGACGAGG+AGG 0.708511 3_2:+64379500 Msa0417270:CDS
CTGCTTAAAGAACAAAAGGG+GGG 0.713202 3_2:+64377212 Msa0417270:CDS
TGAAGGCAAAGAAAATGACG+AGG 0.732415 3_2:+64379497 Msa0417270:CDS
AGAAACGCGAGAGCGCATGG+CGG 0.788364 3_2:-64375038 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTTTTTTTATAGTTTT+TGG + chr3_2:64376219-64376238 Msa0417270:intron 10.0%
!! TATAAAAAAAAAAAATTGCA+CGG - chr3_2:64376278-64376297 None:intergenic 10.0%
!!! CAATTTTTTTTTATAGTTTT+TGG - chr3_2:64376568-64376587 None:intergenic 10.0%
!!! CAAAATTTTTTTATAGTTTT+TGG - chr3_2:64376629-64376648 None:intergenic 10.0%
!! AGTAATTATTTCATTATATA+AGG - chr3_2:64378158-64378177 None:intergenic 10.0%
!!! TTATTACTGAATTTTTTATA+AGG + chr3_2:64379888-64379907 Msa0417270:intron 10.0%
!!! ATTAAGAAAAAAATAGATTT+TGG + chr3_2:64380225-64380244 Msa0417270:intron 10.0%
!!! ATTTATTTTTACTTGTCAAT+CGG - chr3_2:64374919-64374938 None:intergenic 15.0%
!! AAACAATATAACTTCAAATT+TGG - chr3_2:64375849-64375868 None:intergenic 15.0%
!! AAATCCAAATAAAAGAATAA+GGG - chr3_2:64376029-64376048 None:intergenic 15.0%
!! AAAATCCAAATAAAAGAATA+AGG - chr3_2:64376030-64376049 None:intergenic 15.0%
!!! TTTATTTGGATTTTGTTTTA+TGG + chr3_2:64376036-64376055 Msa0417270:intron 15.0%
!! AACTATAAAAAAAATTTGCA+GGG - chr3_2:64376217-64376236 None:intergenic 15.0%
!! AAACTATAAAAAAAATTTGC+AGG - chr3_2:64376218-64376237 None:intergenic 15.0%
!! AAACTATAAAAAAAAATTGC+AGG + chr3_2:64376569-64376588 Msa0417270:intron 15.0%
!! AACTATAAAAAAAAATTGCA+GGG + chr3_2:64376570-64376589 Msa0417270:intron 15.0%
!!! AAACTATAAAAAAATTTTGC+AGG + chr3_2:64376630-64376649 Msa0417270:intron 15.0%
!!! AACTATAAAAAAATTTTGCA+GGG + chr3_2:64376631-64376650 Msa0417270:intron 15.0%
!!! TTTTTAAAATGGCTAAAATA+TGG - chr3_2:64376695-64376714 None:intergenic 15.0%
!! TTTAATAGCTTTCTTAATTA+GGG - chr3_2:64377294-64377313 None:intergenic 15.0%
!!! TTTTAATAGCTTTCTTAATT+AGG - chr3_2:64377295-64377314 None:intergenic 15.0%
!! TTACTTATAAACTTCTTAAA+GGG - chr3_2:64377580-64377599 None:intergenic 15.0%
!! TTTACTTATAAACTTCTTAA+AGG - chr3_2:64377581-64377600 None:intergenic 15.0%
!! GTTAAATGTATTAAATATGT+TGG + chr3_2:64378210-64378229 Msa0417270:intron 15.0%
!!! TTGACTTTTTTATAAATAAC+GGG - chr3_2:64378452-64378471 None:intergenic 15.0%
!!! CTTGACTTTTTTATAAATAA+CGG - chr3_2:64378453-64378472 None:intergenic 15.0%
!!! TGAAAATCAAAAATCAATTT+TGG + chr3_2:64378918-64378937 Msa0417270:intron 15.0%
!! TCTAAGAAAATAAGAAAAAA+GGG - chr3_2:64379291-64379310 None:intergenic 15.0%
!!! TTCTAAGAAAATAAGAAAAA+AGG - chr3_2:64379292-64379311 None:intergenic 15.0%
!!! AGTCTATTTAAAATATTTCA+AGG + chr3_2:64379601-64379620 Msa0417270:intron 15.0%
!!! AAATGATTTTTTTAGCAAAA+TGG + chr3_2:64380285-64380304 Msa0417270:intron 15.0%
!! AAAAATACTAAATTTCAATC+CGG - chr3_2:64381142-64381161 None:intergenic 15.0%
!! AAAAATAGCTTATACATAAG+TGG - chr3_2:64375376-64375395 None:intergenic 20.0%
!!! GATTTTAAAAGGCTAAAATA+TGG + chr3_2:64376121-64376140 Msa0417270:intron 20.0%
!!! CAAAAACAAATTTTTTTGCA+GGG + chr3_2:64376541-64376560 Msa0417270:intron 20.0%
!!! TATGCTTTTACTTCATTTTA+TGG + chr3_2:64376795-64376814 Msa0417270:intron 20.0%
!! ATACATTTATACTTGACTTA+TGG - chr3_2:64376896-64376915 None:intergenic 20.0%
!!! TTTTCTAATTATTCGTTGTT+CGG + chr3_2:64377359-64377378 Msa0417270:intron 20.0%
!!! TAAACTTGATAAATTTTCTC+TGG + chr3_2:64377552-64377571 Msa0417270:CDS 20.0%
!!! TTTGGAACACTTTTTTTTTT+AGG - chr3_2:64377862-64377881 None:intergenic 20.0%
!!! AAAAAAAAAAGTGTTCCAAA+AGG + chr3_2:64377862-64377881 Msa0417270:CDS 20.0%
!! GAATAATTTAGTAATAACCT+TGG - chr3_2:64378058-64378077 None:intergenic 20.0%
!! TATTTCATTATATAAGGAGT+TGG - chr3_2:64378152-64378171 None:intergenic 20.0%
!! TATTTATAAAAAAGTCAAGC+AGG + chr3_2:64378454-64378473 Msa0417270:CDS 20.0%
!! AATTTACAGTAAAGTACAAA+AGG - chr3_2:64378870-64378889 None:intergenic 20.0%
!! AATTTCCAATAATAGATGAT+AGG - chr3_2:64378896-64378915 None:intergenic 20.0%
!! ATGTATTGAAAAACAAAAAC+TGG + chr3_2:64379057-64379076 Msa0417270:intron 20.0%
!! TAGAAATCAAAGAAGTAAAT+AGG + chr3_2:64379307-64379326 Msa0417270:intron 20.0%
!! TCATAAATCATAATAGATTC+TGG + chr3_2:64379653-64379672 Msa0417270:intron 20.0%
!!! TCTATTTTTTTCTTAATGCA+AGG - chr3_2:64380222-64380241 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG + chr3_2:64380258-64380277 Msa0417270:intron 20.0%
!! AAAAAAAATCCAAAACAAAC+AGG + chr3_2:64380383-64380402 Msa0417270:intron 20.0%
!! TTGAAAACACAATCTAAATT+AGG - chr3_2:64380650-64380669 None:intergenic 20.0%
!!! AACATGTTTTAGAATTTAGA+GGG - chr3_2:64381169-64381188 None:intergenic 20.0%
!!! AAACATGTTTTAGAATTTAG+AGG - chr3_2:64381170-64381189 None:intergenic 20.0%
! ATAAGAGAAAGAAACAAACT+CGG - chr3_2:64375080-64375099 None:intergenic 25.0%
! TATCAAACAATCTTTAGACA+AGG + chr3_2:64375257-64375276 Msa0417270:CDS 25.0%
!!! AAGTTATTAGCTGTTTTCAT+AGG + chr3_2:64375435-64375454 Msa0417270:intron 25.0%
!!! AGTTATTAGCTGTTTTCATA+GGG + chr3_2:64375436-64375455 Msa0417270:intron 25.0%
!!! TTTTTCAATTCAGATTGCAA+GGG - chr3_2:64375654-64375673 None:intergenic 25.0%
!!! TTTTTTCAATTCAGATTGCA+AGG - chr3_2:64375655-64375674 None:intergenic 25.0%
! GTATGAAATGACATAAAAAG+AGG - chr3_2:64375698-64375717 None:intergenic 25.0%
! AAAAAATAGCAGATAAGCTA+GGG - chr3_2:64375814-64375833 None:intergenic 25.0%
! TAAAAAATAGCAGATAAGCT+AGG - chr3_2:64375815-64375834 None:intergenic 25.0%
! AAAAGGCTAAAATATGGTAT+TGG + chr3_2:64376127-64376146 Msa0417270:intron 25.0%
!! CCAAAAACAAAAATTTTGCA+GGG - chr3_2:64376310-64376329 None:intergenic 25.0%
!! TCCAAAAACAAAAATTTTGC+AGG - chr3_2:64376311-64376330 None:intergenic 25.0%
! TGACAAATCATCACATAATA+GGG - chr3_2:64376347-64376366 None:intergenic 25.0%
!!! CCTGCAAAAAAATTTGTTTT+TGG - chr3_2:64376543-64376562 None:intergenic 25.0%
!!! CCAAAAACAAATTTTTTTGC+AGG + chr3_2:64376540-64376559 Msa0417270:intron 25.0%
! AAATGGCTAAAATATGGTAT+TGG - chr3_2:64376689-64376708 None:intergenic 25.0%
!!! TAGCCATTTTAAAAATTACC+TGG + chr3_2:64376700-64376719 Msa0417270:intron 25.0%
!!! AAGCCAGGTAATTTTTAAAA+TGG - chr3_2:64376706-64376725 None:intergenic 25.0%
! ACATCAATCTAAAGATGAAA+AGG + chr3_2:64377142-64377161 Msa0417270:intron 25.0%
! TGATTTCAGAAATGTAACTT+TGG + chr3_2:64377498-64377517 Msa0417270:intron 25.0%
! GATTTCAGAAATGTAACTTT+GGG + chr3_2:64377499-64377518 Msa0417270:intron 25.0%
!!! TGTATTTTTGTGCTTCTTAT+GGG - chr3_2:64377652-64377671 None:intergenic 25.0%
! CAAAGTTATGTTTAATGTGA+AGG + chr3_2:64377687-64377706 Msa0417270:intron 25.0%
!!! TTTTTAGTTGCTTTAGTATC+AGG - chr3_2:64377775-64377794 None:intergenic 25.0%
! TGATACTAAAGCAACTAAAA+AGG + chr3_2:64377774-64377793 Msa0417270:CDS 25.0%
! AAATCTGTTATTAAAGCATG+TGG + chr3_2:64378334-64378353 Msa0417270:CDS 25.0%
! AATCTGTTATTAAAGCATGT+GGG + chr3_2:64378335-64378354 Msa0417270:CDS 25.0%
!!! ACTTTTTTATAAATAACGGG+AGG - chr3_2:64378449-64378468 None:intergenic 25.0%
! ACAACTAATTAAAGAATTGG+AGG + chr3_2:64378499-64378518 Msa0417270:CDS 25.0%
! AAATAATGAAGCTAACATTC+GGG - chr3_2:64378622-64378641 None:intergenic 25.0%
! CAAATAATGAAGCTAACATT+CGG - chr3_2:64378623-64378642 None:intergenic 25.0%
! ATATGCATTCCATTATCAAA+CGG + chr3_2:64378660-64378679 Msa0417270:intron 25.0%
! TTACTGCACAAAAAAAAAAC+CGG - chr3_2:64378776-64378795 None:intergenic 25.0%
! TTAGTCCTATCATCTATTAT+TGG + chr3_2:64378888-64378907 Msa0417270:intron 25.0%
! CAAAAACTGGAATATTTGAT+AGG + chr3_2:64379070-64379089 Msa0417270:intron 25.0%
! ATACAAATCTAACATCTTCT+GGG - chr3_2:64379146-64379165 None:intergenic 25.0%
! TATACAAATCTAACATCTTC+TGG - chr3_2:64379147-64379166 None:intergenic 25.0%
!!! TGTATAGTAATCCCTTTTTT+TGG + chr3_2:64379161-64379180 Msa0417270:intron 25.0%
!!! GTATAGTAATCCCTTTTTTT+GGG + chr3_2:64379162-64379181 Msa0417270:intron 25.0%
! TTTCAAATGACCCAAAAAAA+GGG - chr3_2:64379175-64379194 None:intergenic 25.0%
! ATTTCAAATGACCCAAAAAA+AGG - chr3_2:64379176-64379195 None:intergenic 25.0%
! ACAGCATTTAGATAACAAAA+TGG - chr3_2:64379837-64379856 None:intergenic 25.0%
! CAATCTAAATTAGGTTATAC+AGG - chr3_2:64380641-64380660 None:intergenic 25.0%
!!! TTCCTCTGTATTTAAGATTT+TGG - chr3_2:64380681-64380700 None:intergenic 25.0%
! CAGATTCTGCAATAATTAAA+AGG + chr3_2:64380911-64380930 Msa0417270:three_prime_UTR 25.0%
! TGAATCTTCCACAATTAATT+AGG + chr3_2:64380934-64380953 Msa0417270:three_prime_UTR 25.0%
! GGATAAAAGTAAAAAGAGAA+AGG - chr3_2:64381016-64381035 None:intergenic 25.0%
!!! ACATGTTTTAGAATTTAGAG+GGG - chr3_2:64381168-64381187 None:intergenic 25.0%
! GGTATTATATTCGTTGAAAT+TGG + chr3_2:64381321-64381340 Msa0417270:three_prime_UTR 25.0%
!!! TTTTAGGTTTGGATACAATA+AGG - chr3_2:64381419-64381438 None:intergenic 25.0%
!! TAGGGTTTTTCAAAGGAAAA+AGG - chr3_2:64375293-64375312 None:intergenic 30.0%
!! TTGGAATTAGGGTTTTTCAA+AGG - chr3_2:64375300-64375319 None:intergenic 30.0%
ATAACCTTGTAAGAAAGTGA+CGG - chr3_2:64375548-64375567 None:intergenic 30.0%
AAGCTATAAGCTACTTGAAT+TGG - chr3_2:64375608-64375627 None:intergenic 30.0%
TTGGTTGAATTTGTAGTGTT+TGG - chr3_2:64375749-64375768 None:intergenic 30.0%
AAGCTATCTTGGAGAAATTA+TGG + chr3_2:64375895-64375914 Msa0417270:intron 30.0%
!!! CCAAAAGTTTTAGACTGTTT+GGG - chr3_2:64375971-64375990 None:intergenic 30.0%
!!! ACCAAAAGTTTTAGACTGTT+TGG - chr3_2:64375972-64375991 None:intergenic 30.0%
TAAAAGAATAAGGGTCTGTT+TGG - chr3_2:64376020-64376039 None:intergenic 30.0%
! CAGACCCTTATTCTTTTATT+TGG + chr3_2:64376022-64376041 Msa0417270:intron 30.0%
! GTTTCTGTGTGGATTTTAAA+AGG + chr3_2:64376110-64376129 Msa0417270:intron 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG - chr3_2:64376185-64376204 None:intergenic 30.0%
!!! AAAACTGGTCTATTTTTGCA+GGG - chr3_2:64376246-64376265 None:intergenic 30.0%
!!! CCCTGCAAAATTTTTGTTTT+TGG + chr3_2:64376307-64376326 Msa0417270:intron 30.0%
GACAAATCATCACATAATAG+GGG - chr3_2:64376346-64376365 None:intergenic 30.0%
GTGACAAATCATCACATAAT+AGG - chr3_2:64376348-64376367 None:intergenic 30.0%
TGACAAATCATCACATAACT+GGG + chr3_2:64376503-64376522 Msa0417270:intron 30.0%
TAGCTGAAGAAACTTATTGT+TGG + chr3_2:64376759-64376778 Msa0417270:intron 30.0%
TATATGTGATGAAGAATGCT+TGG + chr3_2:64376972-64376991 Msa0417270:intron 30.0%
TTCTTAATTAGGGTCTCATT+TGG - chr3_2:64377284-64377303 None:intergenic 30.0%
AAAAAGATCTTCATACCTCA+AGG + chr3_2:64377313-64377332 Msa0417270:CDS 30.0%
TAAGATCTTCCTCCAATAAT+CGG - chr3_2:64377534-64377553 None:intergenic 30.0%
TATAAGTAAAGAGCTTGATG+AGG + chr3_2:64377591-64377610 Msa0417270:CDS 30.0%
!! GTGTATTTTTGTGCTTCTTA+TGG - chr3_2:64377653-64377672 None:intergenic 30.0%
!! ATTAATGTCTTCTGAAGTTC+CGG + chr3_2:64377711-64377730 Msa0417270:CDS 30.0%
!! TTCTGAAGTTCAAGGAAAAA+AGG - chr3_2:64378262-64378281 None:intergenic 30.0%
! GATGAGGTGATTTTCTATTT+TGG + chr3_2:64378357-64378376 Msa0417270:intron 30.0%
CGGACAACTAATTAAAGAAT+TGG + chr3_2:64378496-64378515 Msa0417270:CDS 30.0%
AATAATGAAGCTAACATTCG+GGG - chr3_2:64378621-64378640 None:intergenic 30.0%
GCATATACTATTCAATCAGA+AGG - chr3_2:64378646-64378665 None:intergenic 30.0%
TATGCATTCCATTATCAAAC+GGG + chr3_2:64378661-64378680 Msa0417270:intron 30.0%
GGAAAAGCTTTCAATTGTTT+GGG - chr3_2:64378737-64378756 None:intergenic 30.0%
AGGAAAAGCTTTCAATTGTT+TGG - chr3_2:64378738-64378757 None:intergenic 30.0%
AAAAAAAAACCGGATCAAAC+TGG - chr3_2:64378766-64378785 None:intergenic 30.0%
! AAAGTGCCATTCTCTATTAT+TGG + chr3_2:64378974-64378993 Msa0417270:intron 30.0%
CTAACTCCAATAATAGAGAA+TGG - chr3_2:64378983-64379002 None:intergenic 30.0%
CATTCTCTATTATTGGAGTT+AGG + chr3_2:64378981-64379000 Msa0417270:intron 30.0%
ACTCCAGTATTTGCAAATAA+AGG + chr3_2:64379095-64379114 Msa0417270:intron 30.0%
CTCCAGTATTTGCAAATAAA+GGG + chr3_2:64379096-64379115 Msa0417270:intron 30.0%
TCCAGTATTTGCAAATAAAG+GGG + chr3_2:64379097-64379116 Msa0417270:intron 30.0%
TACAAATCTAACATCTTCTG+GGG - chr3_2:64379145-64379164 None:intergenic 30.0%
ATAAAATGAGACCATATCAG+TGG - chr3_2:64379241-64379260 None:intergenic 30.0%
CAAAGAAGTAAATAGGAAGA+AGG + chr3_2:64379314-64379333 Msa0417270:CDS 30.0%
TGAGAGTGAAGAATTTAATG+CGG + chr3_2:64379575-64379594 Msa0417270:CDS 30.0%
TCTGTTGATGTTTAATTGCT+TGG + chr3_2:64379717-64379736 Msa0417270:intron 30.0%
TGATGTTTAATTGCTTGGAT+AGG + chr3_2:64379722-64379741 Msa0417270:intron 30.0%
GATGTTTAATTGCTTGGATA+GGG + chr3_2:64379723-64379742 Msa0417270:intron 30.0%
TAACAAAATGGAGCTATACA+GGG - chr3_2:64379825-64379844 None:intergenic 30.0%
ATAACAAAATGGAGCTATAC+AGG - chr3_2:64379826-64379845 None:intergenic 30.0%
TTTATAAGGTCCATGTATTC+AGG + chr3_2:64379902-64379921 Msa0417270:intron 30.0%
TTGAGGTTGCTAATCAATTA+AGG - chr3_2:64379943-64379962 None:intergenic 30.0%
TAAATACAGAGGAAGAAATG+AGG - chr3_2:64380687-64380706 None:intergenic 30.0%
TCATTTCTTCCTCTGTATTT+AGG + chr3_2:64380024-64380043 Msa0417270:intron 30.0%
TGAGGTTGCTAATCAATTAA+GGG - chr3_2:64379942-64379961 None:intergenic 30.0%
TTGAGGTTGCTAATCAATTA+AGG - chr3_2:64379943-64379962 None:intergenic 30.0%
TCTTCCAAAACAAAAGATTG+AGG - chr3_2:64380427-64380446 None:intergenic 30.0%
ATCACCCATGAAAAATATGA+GGG - chr3_2:64380557-64380576 None:intergenic 30.0%
AGCCAAAATCTTAAATACAG+AGG + chr3_2:64380676-64380695 Msa0417270:intron 30.0%
CATCACTTCCTAATTAATTG+TGG - chr3_2:64380945-64380964 None:intergenic 30.0%
CACAATTAATTAGGAAGTGA+TGG + chr3_2:64380943-64380962 Msa0417270:three_prime_UTR 30.0%
CATCTGACACGAAAAAAATT+TGG - chr3_2:64381040-64381059 None:intergenic 30.0%
TGTCAGATGACCAATTAATT+AGG + chr3_2:64381051-64381070 Msa0417270:intron 30.0%
AGCATCACTTCCTAATTAAT+TGG - chr3_2:64381064-64381083 None:intergenic 30.0%
!! AAACGGAATTGATTTGTTCA+AGG + chr3_2:64381300-64381319 Msa0417270:three_prime_UTR 30.0%
!! AATCGGTGCTGTGTTTATTA+GGG - chr3_2:64374902-64374921 None:intergenic 35.0%
AGATTGCTCGAGAAAGATTT+AGG + chr3_2:64375198-64375217 Msa0417270:CDS 35.0%
GATTGCTCGAGAAAGATTTA+GGG + chr3_2:64375199-64375218 Msa0417270:CDS 35.0%
TTATACATATGCGTTTGCGT+TGG - chr3_2:64375319-64375338 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr3_2:64375884-64375903 Msa0417270:intron 35.0%
!! CCCAAACAGTCTAAAACTTT+TGG + chr3_2:64375968-64375987 Msa0417270:intron 35.0%
!!! TGCTGAAAAGTTGGTTTTTC+TGG + chr3_2:64376085-64376104 Msa0417270:intron 35.0%
! CAAAACTGACCTATTTTGCA+GGG - chr3_2:64376154-64376173 None:intergenic 35.0%
!! GTTTTAGTCCCTGCAAAAAT+AGG + chr3_2:64376174-64376193 Msa0417270:intron 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG - chr3_2:64376186-64376205 None:intergenic 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG + chr3_2:64376184-64376203 Msa0417270:intron 35.0%
!!! CAAAACTGGTCTATTTTTGC+AGG - chr3_2:64376247-64376266 None:intergenic 35.0%
! CTGCAAAAATAGACCAGTTT+TGG + chr3_2:64376245-64376264 Msa0417270:intron 35.0%
!!! TTGTCACTTTTGTGCATATG+TGG + chr3_2:64376361-64376380 Msa0417270:intron 35.0%
GTGACAAATCATCACATAAC+TGG + chr3_2:64376502-64376521 Msa0417270:intron 35.0%
GACAAATCATCACATAACTG+GGG + chr3_2:64376504-64376523 Msa0417270:intron 35.0%
!!! AAAACTCGCCTATTTTTGCA+GGG + chr3_2:64376602-64376621 Msa0417270:intron 35.0%
!! TTTTTGGTCCCTGCAAAAAT+AGG - chr3_2:64376235-64376254 None:intergenic 35.0%
! TGTTTTGTGTGACCAAACTT+TGG + chr3_2:64376867-64376886 Msa0417270:intron 35.0%
GACTTATGGTAACCAAAGTT+TGG - chr3_2:64376882-64376901 None:intergenic 35.0%
CTATCATCACTAGATGAAAG+TGG - chr3_2:64376938-64376957 None:intergenic 35.0%
TCTTTAAGCAGACCTAATAC+CGG - chr3_2:64377203-64377222 None:intergenic 35.0%
AGGTCTGCTTAAAGAACAAA+AGG + chr3_2:64377208-64377227 Msa0417270:intron 35.0%
GGTCTGCTTAAAGAACAAAA+GGG + chr3_2:64377209-64377228 Msa0417270:intron 35.0%
GTCTGCTTAAAGAACAAAAG+GGG + chr3_2:64377210-64377229 Msa0417270:CDS 35.0%
TCTGCTTAAAGAACAAAAGG+GGG + chr3_2:64377211-64377230 Msa0417270:CDS 35.0%
! ATTTTCTTAGCACTTTCTGC+AGG - chr3_2:64377739-64377758 None:intergenic 35.0%
!! TCATCTCCTTTACGCTTTTT+GGG - chr3_2:64377910-64377929 None:intergenic 35.0%
!! CTTGTTTCTTCTGAAGTTCA+AGG - chr3_2:64378270-64378289 None:intergenic 35.0%
TTATTAAAGCATGTGGGATG+AGG + chr3_2:64378341-64378360 Msa0417270:CDS 35.0%
CAACAAAGAACTAGGAACAT+AGG - chr3_2:64378386-64378405 None:intergenic 35.0%
! ATGTTCCTAGTTCTTTGTTG+AGG + chr3_2:64378386-64378405 Msa0417270:intron 35.0%
ATCATCCTCAACAAAGAACT+AGG - chr3_2:64378394-64378413 None:intergenic 35.0%
GAGGAAATACTATCTAGAGA+AGG + chr3_2:64378518-64378537 Msa0417270:CDS 35.0%
TCTTCAAATCCATCTGAGAA+GGG + chr3_2:64378545-64378564 Msa0417270:CDS 35.0%
! TAGAGAATGGCACTTTTACA+TGG - chr3_2:64378970-64378989 None:intergenic 35.0%
TAAGTAGTCTCAGACAAACA+TGG + chr3_2:64379015-64379034 Msa0417270:intron 35.0%
! TCCCCTTTATTTGCAAATAC+TGG - chr3_2:64379101-64379120 None:intergenic 35.0%
CAACTTAATGCAGCAAACAT+TGG - chr3_2:64379199-64379218 None:intergenic 35.0%
AAGTAAATAGGAAGAAGGCA+CGG + chr3_2:64379319-64379338 Msa0417270:CDS 35.0%
GTTGTCATTATCACTACCTT+TGG - chr3_2:64379472-64379491 None:intergenic 35.0%
GATAATGACAACGATGATGA+AGG + chr3_2:64379480-64379499 Msa0417270:CDS 35.0%
AGATGAAGAAGATGAAGAAG+AGG + chr3_2:64379527-64379546 Msa0417270:CDS 35.0%
GAGAGTGAAGAATTTAATGC+GGG + chr3_2:64379576-64379595 Msa0417270:CDS 35.0%
AGCTCAAAGATATAGAACGT+GGG - chr3_2:64379800-64379819 None:intergenic 35.0%
AAGCTCAAAGATATAGAACG+TGG - chr3_2:64379801-64379820 None:intergenic 35.0%
CAATCTAAGTCCTGAATACA+TGG - chr3_2:64379915-64379934 None:intergenic 35.0%
GAGGTGTATCTATATGTACT+TGG - chr3_2:64380006-64380025 None:intergenic 35.0%
AATCCAAGTCCTAAATACAG+AGG - chr3_2:64380036-64380055 None:intergenic 35.0%
! AATTAAGGGCCTGTTTGTTT+TGG - chr3_2:64380395-64380414 None:intergenic 35.0%
!! GCAACCTCAATCTTTTGTTT+TGG + chr3_2:64380420-64380439 Msa0417270:intron 35.0%
CAGCACATTTAAAGAATCTC+TGG + chr3_2:64380500-64380519 Msa0417270:intron 35.0%
TCACCCATGAAAAATATGAG+GGG - chr3_2:64380556-64380575 None:intergenic 35.0%
CATCACCCATGAAAAATATG+AGG - chr3_2:64380558-64380577 None:intergenic 35.0%
TCATGGGTGATGAAAGATTT+CGG + chr3_2:64380566-64380585 Msa0417270:intron 35.0%
TGATGAAAGATTTCGGTTTC+AGG + chr3_2:64380573-64380592 Msa0417270:intron 35.0%
AGGAAGAAATGAGTTGTACT+TGG + chr3_2:64380696-64380715 Msa0417270:intron 35.0%
AAGAAGACGGTTAAAGAAGT+CGG - chr3_2:64380751-64380770 None:intergenic 35.0%
TTAACCGTCTTCTTTAACTC+TGG + chr3_2:64380757-64380776 Msa0417270:intron 35.0%
TCTTCTCTATGACAAGAAGT+TGG + chr3_2:64380787-64380806 Msa0417270:intron 35.0%
CTGACACGAAAAAAATTTGG+AGG - chr3_2:64381037-64381056 None:intergenic 35.0%
! AACATTATCTAGTTTCCCCT+TGG + chr3_2:64381093-64381112 Msa0417270:intron 35.0%
TGGATAGGAACTTAAAACAC+CGG + chr3_2:64381120-64381139 Msa0417270:intron 35.0%
ACAGTATGCTAAACTCGAAA+CGG + chr3_2:64381283-64381302 Msa0417270:three_prime_UTR 35.0%
TGAAGTGGAGTTTAGCAGTT+GGG + chr3_2:64374830-64374849 Msa0417270:five_prime_UTR 40.0%
TAGGGTACACAGTACGATTT+CGG - chr3_2:64374884-64374903 None:intergenic 40.0%
!! CAATCGGTGCTGTGTTTATT+AGG - chr3_2:64374903-64374922 None:intergenic 40.0%
AGAGAGAAACAGAGAGAACA+TGG + chr3_2:64374955-64374974 Msa0417270:exon 40.0%
! AGGGTTTGACGAGTTTTCTT+TGG + chr3_2:64375218-64375237 Msa0417270:CDS 40.0%
ATGCGTTTGCGTTGGAATTA+GGG - chr3_2:64375311-64375330 None:intergenic 40.0%
TATGCGTTTGCGTTGGAATT+AGG - chr3_2:64375312-64375331 None:intergenic 40.0%
! CTGTTTTCATAGGGTCTGTT+TGG + chr3_2:64375445-64375464 Msa0417270:intron 40.0%
! CTAACCGTCACTTTCTTACA+AGG + chr3_2:64375541-64375560 Msa0417270:intron 40.0%
!! ATAGCACATAGCGGATAAGA+TGG - chr3_2:64375772-64375791 None:intergenic 40.0%
! AGCTAGCTTATAGCACATAG+CGG - chr3_2:64375781-64375800 None:intergenic 40.0%
GAATAAGGGTCTGTTTGGAT+TGG - chr3_2:64376015-64376034 None:intergenic 40.0%
TTCTGCTGTTGCTGAAAAGT+TGG + chr3_2:64376076-64376095 Msa0417270:intron 40.0%
!!! TTTTTCTGGCTGTTTCTGTG+TGG + chr3_2:64376099-64376118 Msa0417270:intron 40.0%
! CCAAAACTGACCTATTTTGC+AGG - chr3_2:64376155-64376174 None:intergenic 40.0%
! CCTGCAAAATAGGTCAGTTT+TGG + chr3_2:64376152-64376171 Msa0417270:intron 40.0%
TCATCACATAATAGGGGTCA+GGG - chr3_2:64376340-64376359 None:intergenic 40.0%
ATCATCACATAATAGGGGTC+AGG - chr3_2:64376341-64376360 None:intergenic 40.0%
AATCATCACATAACTGGGGT+CGG + chr3_2:64376508-64376527 Msa0417270:intron 40.0%
! CTGCAAAAATAGGCGAGTTT+TGG - chr3_2:64376603-64376622 None:intergenic 40.0%
!!! CAAAACTCGCCTATTTTTGC+AGG + chr3_2:64376601-64376620 Msa0417270:intron 40.0%
!! CAAAACTGGCCTATTTTGCA+GGG + chr3_2:64376662-64376681 Msa0417270:intron 40.0%
! TTACCTGGCTTGTCAAATAC+CGG + chr3_2:64376715-64376734 Msa0417270:intron 40.0%
!! TTATTTCTGCCACAGTGCTT+AGG + chr3_2:64377026-64377045 Msa0417270:intron 40.0%
! GAAAGTACACAAGAGACTGA+AGG + chr3_2:64377107-64377126 Msa0417270:intron 40.0%
! CCATTTTCTCCTCATCTTCA+GGG - chr3_2:64377172-64377191 None:intergenic 40.0%
! TCCATTTTCTCCTCATCTTC+AGG - chr3_2:64377173-64377192 None:intergenic 40.0%
GGAGAAAATGGAAGATTCTC+CGG + chr3_2:64377181-64377200 Msa0417270:intron 40.0%
ATGGAAGATTCTCCGGTATT+AGG + chr3_2:64377188-64377207 Msa0417270:intron 40.0%
CTGCTTAAAGAACAAAAGGG+GGG + chr3_2:64377212-64377231 Msa0417270:CDS 40.0%
CAAGAAACCAAGATAGCAGA+AGG + chr3_2:64377239-64377258 Msa0417270:CDS 40.0%
TTCAGATGAAGAGAGTGAAG+AGG + chr3_2:64377822-64377841 Msa0417270:CDS 40.0%
! GTCATCTCCTTTACGCTTTT+TGG - chr3_2:64377911-64377930 None:intergenic 40.0%
! CTTTTTCTTGCTGGGTAGAT+TGG - chr3_2:64377935-64377954 None:intergenic 40.0%
CAATCTACCCAGCAAGAAAA+AGG + chr3_2:64377933-64377952 Msa0417270:intron 40.0%
!! TCTTCTGATGCTGCTTTATC+AGG - chr3_2:64377964-64377983 None:intergenic 40.0%
AATAGTGATGCAGAAGACGA+TGG + chr3_2:64377985-64378004 Msa0417270:CDS 40.0%
AGTATTCTCTGCTGACGAAT+GGG - chr3_2:64378034-64378053 None:intergenic 40.0%
TAGTATTCTCTGCTGACGAA+TGG - chr3_2:64378035-64378054 None:intergenic 40.0%
GTCTTCAAATCCATCTGAGA+AGG + chr3_2:64378544-64378563 Msa0417270:CDS 40.0%
AAAAACTCACCCTTCTCAGA+TGG - chr3_2:64378557-64378576 None:intergenic 40.0%
TCCATTATCAAACGGGATCT+TGG + chr3_2:64378668-64378687 Msa0417270:intron 40.0%
TCCAAGATCCCGTTTGATAA+TGG - chr3_2:64378672-64378691 None:intergenic 40.0%
ATTATCAAACGGGATCTTGG+AGG + chr3_2:64378671-64378690 Msa0417270:intron 40.0%
GGGTTGTGTGAGAGATAATT+GGG - chr3_2:64378717-64378736 None:intergenic 40.0%
TGGGTTGTGTGAGAGATAAT+TGG - chr3_2:64378718-64378737 None:intergenic 40.0%
! TCCTGTTTTCCAGTTTGATC+CGG + chr3_2:64378754-64378773 Msa0417270:intron 40.0%
! AGTAAATAGGAAGAAGGCAC+GGG + chr3_2:64379320-64379339 Msa0417270:CDS 40.0%
ATCAATACCCTCAAGTTCCT+TGG - chr3_2:64379346-64379365 None:intergenic 40.0%
TTGTGTCAAGTACACGTAGA+AGG + chr3_2:64379376-64379395 Msa0417270:CDS 40.0%
TGTGTCAAGTACACGTAGAA+GGG + chr3_2:64379377-64379396 Msa0417270:CDS 40.0%
CTAGTTTCCACTGGAATCTT+GGG - chr3_2:64379438-64379457 None:intergenic 40.0%
! ACTAGTTTCCACTGGAATCT+TGG - chr3_2:64379439-64379458 None:intergenic 40.0%
AAGATTCCAGTGGAAACTAG+TGG + chr3_2:64379438-64379457 Msa0417270:intron 40.0%
ACTAGTGGCAAAGATACCAA+AGG + chr3_2:64379453-64379472 Msa0417270:intron 40.0%
TGAAGGCAAAGAAAATGACG+AGG + chr3_2:64379497-64379516 Msa0417270:CDS 40.0%
TGAAGAAGATGAAGAAGAGG+AGG + chr3_2:64379530-64379549 Msa0417270:CDS 40.0%
! CTGCACTGCTTTCATTTTGT+TGG + chr3_2:64379626-64379645 Msa0417270:intron 40.0%
! TTCTCTAGTCCTTTTTGCAG+TGG + chr3_2:64379686-64379705 Msa0417270:intron 40.0%
ACTGCTTAACCACTGCAAAA+AGG - chr3_2:64379698-64379717 None:intergenic 40.0%
CTTGGATAGGGTAAGCAATA+TGG + chr3_2:64379735-64379754 Msa0417270:intron 40.0%
GGGTAAGCAATATGGATAGT+TGG + chr3_2:64379743-64379762 Msa0417270:intron 40.0%
! CTTCCTCTGTATTTAGGACT+TGG + chr3_2:64380030-64380049 Msa0417270:intron 40.0%
ACTTGGATTGAGCAGTCTTA+GGG + chr3_2:64380047-64380066 Msa0417270:intron 40.0%
! ACCCCCCTCATATTTTTCAT+GGG + chr3_2:64380550-64380569 Msa0417270:intron 40.0%
ACCCATGAAAAATATGAGGG+GGG - chr3_2:64380554-64380573 None:intergenic 40.0%
CACCCATGAAAAATATGAGG+GGG - chr3_2:64380555-64380574 None:intergenic 40.0%
TGCACCAGAGTTAAAGAAGA+CGG - chr3_2:64380764-64380783 None:intergenic 40.0%
TCTGATTCATGCAGATGAAG+AGG + chr3_2:64380870-64380889 Msa0417270:intron 40.0%
AAGAGGACAGTGATTGAACT+CGG + chr3_2:64380887-64380906 Msa0417270:exon 40.0%
AGTTCCTATCCATAGACCAA+GGG - chr3_2:64381112-64381131 None:intergenic 40.0%
AAGTTCCTATCCATAGACCA+AGG - chr3_2:64381113-64381132 None:intergenic 40.0%
TGCCTCATTTCAATCGTAAG+TGG + chr3_2:64381200-64381219 Msa0417270:intron 40.0%
! TGCCACTTACGATTGAAATG+AGG - chr3_2:64381205-64381224 None:intergenic 40.0%
GTGAAGTGGAGTTTAGCAGT+TGG + chr3_2:64374829-64374848 Msa0417270:five_prime_UTR 45.0%
AGGGTACACAGTACGATTTC+GGG - chr3_2:64374883-64374902 None:intergenic 45.0%
AGAGAGAACATGGCAGAAGA+TGG + chr3_2:64374965-64374984 Msa0417270:exon 45.0%
!! CACATAGCGGATAAGATGGT+TGG - chr3_2:64375768-64375787 None:intergenic 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG + chr3_2:64376142-64376161 Msa0417270:intron 45.0%
! GCACGGACTAAAACCAAAAC+TGG - chr3_2:64376261-64376280 None:intergenic 45.0%
ATCATCACATAACTGGGGTC+GGG + chr3_2:64376509-64376528 Msa0417270:intron 45.0%
GCAGGGACTAAAACCAAAAC+TGG + chr3_2:64376587-64376606 Msa0417270:intron 45.0%
! CCTGCAAAATAGGCCAGTTT+TGG - chr3_2:64376664-64376683 None:intergenic 45.0%
!! CCAAAACTGGCCTATTTTGC+AGG + chr3_2:64376661-64376680 Msa0417270:intron 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG - chr3_2:64376142-64376161 None:intergenic 45.0%
TTTCCGGTATTTGACAAGCC+AGG - chr3_2:64376721-64376740 None:intergenic 45.0%
GGCTTGTCAAATACCGGAAA+TGG + chr3_2:64376721-64376740 Msa0417270:intron 45.0%
TGTCAAATACCGGAAATGGC+TGG + chr3_2:64376725-64376744 Msa0417270:intron 45.0%
ACAAGAGACTGAAGGACAGA+AGG + chr3_2:64377115-64377134 Msa0417270:intron 45.0%
AAAGGATCTCCCTGAAGATG+AGG + chr3_2:64377160-64377179 Msa0417270:intron 45.0%
CCCTGAAGATGAGGAGAAAA+TGG + chr3_2:64377169-64377188 Msa0417270:intron 45.0%
ACCAAGATAGCAGAAGGCAA+TGG + chr3_2:64377245-64377264 Msa0417270:CDS 45.0%
CCAAGATAGCAGAAGGCAAT+GGG + chr3_2:64377246-64377265 Msa0417270:CDS 45.0%
!! CATACTCTGCATTAGCCTTG+AGG - chr3_2:64377331-64377350 None:intergenic 45.0%
! TAGTCTTCGCCGATTATTGG+AGG + chr3_2:64377522-64377541 Msa0417270:CDS 45.0%
TTAGCACTTTCTGCAGGTTC+CGG - chr3_2:64377733-64377752 None:intergenic 45.0%
!!! TTACGCTTTTTGGGTCCAAC+AGG - chr3_2:64377901-64377920 None:intergenic 45.0%
! GTTGGACCCAAAAAGCGTAA+AGG + chr3_2:64377901-64377920 Msa0417270:intron 45.0%
! GGCTTGACCTTTTTCTTGCT+GGG - chr3_2:64377943-64377962 None:intergenic 45.0%
! AGGCTTGACCTTTTTCTTGC+TGG - chr3_2:64377944-64377963 None:intergenic 45.0%
GTCAGCAGAGAATACTACCA+AGG + chr3_2:64378038-64378057 Msa0417270:CDS 45.0%
CGTTTACTGTACACAGGAGT+TGG - chr3_2:64378301-64378320 None:intergenic 45.0%
TCCTGTGTACAGTAAACGTG+TGG + chr3_2:64378303-64378322 Msa0417270:CDS 45.0%
TCCACACGTTTACTGTACAC+AGG - chr3_2:64378307-64378326 None:intergenic 45.0%
AGCAGGTCCCTGAAAACAAA+CGG + chr3_2:64378471-64378490 Msa0417270:CDS 45.0%
AAGCTAACATTCGGGGATGA+AGG - chr3_2:64378614-64378633 None:intergenic 45.0%
ACCGGATCAAACTGGAAAAC+AGG - chr3_2:64378758-64378777 None:intergenic 45.0%
TGATGCTACAGCCACTGATA+TGG + chr3_2:64379227-64379246 Msa0417270:intron 45.0%
!!! AAGGGCGACGATTAGTTTTG+CGG + chr3_2:64379395-64379414 Msa0417270:CDS 45.0%
! TCTTTGCCACTAGTTTCCAC+TGG - chr3_2:64379447-64379466 None:intergenic 45.0%
AGGCAAAGAAAATGACGAGG+AGG + chr3_2:64379500-64379519 Msa0417270:CDS 45.0%
! GAGGATAGCAGTGATGATGA+TGG + chr3_2:64379549-64379568 Msa0417270:CDS 45.0%
TGTGCGTGTTCAGCATATTG+AGG - chr3_2:64379960-64379979 None:intergenic 45.0%
GACTTGGATTGAGCAGTCTT+AGG + chr3_2:64380046-64380065 Msa0417270:intron 45.0%
! GACCCCCCTCATATTTTTCA+TGG + chr3_2:64380549-64380568 Msa0417270:intron 45.0%
AGAGGACAGTGATTGAACTC+GGG + chr3_2:64380888-64380907 Msa0417270:exon 45.0%
! TCTAGTTTCCCCTTGGTCTA+TGG + chr3_2:64381100-64381119 Msa0417270:intron 45.0%
TTTCCCCTTGGTCTATGGAT+AGG + chr3_2:64381105-64381124 Msa0417270:intron 45.0%
GTTCCTATCCATAGACCAAG+GGG - chr3_2:64381111-64381130 None:intergenic 45.0%
!!! TTTTTTTTTTTTATAGTTTT+TGG + chr3_2:64376283-64376302 Msa0417270:intron 5.0%
!!! TTTTATCTTTATATTTTTAT+TGG + chr3_2:64379255-64379274 Msa0417270:intron 5.0%
TCATCACATAACTGGGGTCG+GGG + chr3_2:64376510-64376529 Msa0417270:intron 50.0%
! ATACCGGAAATGGCTGGTCA+TGG + chr3_2:64376731-64376750 Msa0417270:intron 50.0%
! TACCGGAAATGGCTGGTCAT+GGG + chr3_2:64376732-64376751 Msa0417270:intron 50.0%
TGATGCCACAAAGACGTCTG+AGG + chr3_2:64377067-64377086 Msa0417270:CDS 50.0%
ACAAAGACGTCTGAGGAGGA+CGG + chr3_2:64377074-64377093 Msa0417270:CDS 50.0%
AGAGACTGAAGGACAGAAGG+AGG + chr3_2:64377118-64377137 Msa0417270:intron 50.0%
CCCATTGCCTTCTGCTATCT+TGG - chr3_2:64377249-64377268 None:intergenic 50.0%
! GGGTAGTCTTCGCCGATTAT+TGG + chr3_2:64377519-64377538 Msa0417270:CDS 50.0%
! GGAGTCTGCATCTTGCCTTT+TGG - chr3_2:64377880-64377899 None:intergenic 50.0%
GCAGGTCCCTGAAAACAAAC+GGG + chr3_2:64378472-64378491 Msa0417270:CDS 50.0%
GTCCCTGAAAACAAACGGGA+CGG + chr3_2:64378476-64378495 Msa0417270:CDS 50.0%
!! GTCCGTCCCGTTTGTTTTCA+GGG - chr3_2:64378481-64378500 None:intergenic 50.0%
!! TGTCCGTCCCGTTTGTTTTC+AGG - chr3_2:64378482-64378501 None:intergenic 50.0%
ACAAACATGGCTGCACAGAG+AGG + chr3_2:64379028-64379047 Msa0417270:intron 50.0%
CAAACATGGCTGCACAGAGA+GGG + chr3_2:64379029-64379048 Msa0417270:intron 50.0%
! ACTGGAATCTTGGGCTTTGG+TGG - chr3_2:64379429-64379448 None:intergenic 50.0%
ACCAAAGCCCAAGATTCCAG+TGG + chr3_2:64379428-64379447 Msa0417270:CDS 50.0%
TCCACTGGAATCTTGGGCTT+TGG - chr3_2:64379432-64379451 None:intergenic 50.0%
CATCACATAACTGGGGTCGG+GGG + chr3_2:64376511-64376530 Msa0417270:intron 55.0%
TGCCCATGACCAGCCATTTC+CGG - chr3_2:64376737-64376756 None:intergenic 55.0%
TCTGCCACAGTGCTTAGGAG+AGG + chr3_2:64377031-64377050 Msa0417270:intron 55.0%
TGCCACAAAGACGTCTGAGG+AGG + chr3_2:64377070-64377089 Msa0417270:CDS 55.0%
GTCCTCCTCAGACGTCTTTG+TGG - chr3_2:64377075-64377094 None:intergenic 55.0%
CAAAGACGTCTGAGGAGGAC+GGG + chr3_2:64377075-64377094 Msa0417270:CDS 55.0%
AAAGACGTCTGAGGAGGACG+GGG + chr3_2:64377076-64377095 Msa0417270:CDS 55.0%
TCTGAGGAGGACGGGGAAAA+AGG + chr3_2:64377083-64377102 Msa0417270:CDS 55.0%
GGCAAGATGCAGACTCCTGT+TGG + chr3_2:64377883-64377902 Msa0417270:intron 55.0%
!! ATCTTGGGCTTTGGTGGTGG+AGG - chr3_2:64379423-64379442 None:intergenic 55.0%
! GGAATCTTGGGCTTTGGTGG+TGG - chr3_2:64379426-64379445 None:intergenic 55.0%
! AGAAACGCGAGAGCGCATGG+CGG - chr3_2:64375041-64375060 None:intergenic 60.0%
! GTGAGAAACGCGAGAGCGCA+TGG - chr3_2:64375044-64375063 None:intergenic 60.0%
! CCAGCCTCTCCTAAGCACTG+TGG - chr3_2:64377038-64377057 None:intergenic 60.0%
CCACAGTGCTTAGGAGAGGC+TGG + chr3_2:64377035-64377054 Msa0417270:intron 60.0%
! TAGGAAGAAGGCACGGGCCA+AGG + chr3_2:64379326-64379345 Msa0417270:CDS 60.0%
GCACGGGCCAAGGAACTTGA+GGG + chr3_2:64379336-64379355 Msa0417270:CDS 60.0%
GGCACGGGCCAAGGAACTTG+AGG + chr3_2:64379335-64379354 Msa0417270:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64374827 64381448 64374827 ID=Msa0417270;Name=Msa0417270
chr3_2 mRNA 64374827 64381448 64374827 ID=Msa0417270-mRNA-1;Parent=Msa0417270;Name=Msa0417270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=147|0.75|0.46|1|0.58|0.38|13|319|437
chr3_2 exon 64374827 64375080 64374827 ID=Msa0417270-mRNA-1:exon:14237;Parent=Msa0417270-mRNA-1
chr3_2 exon 64375173 64375278 64375173 ID=Msa0417270-mRNA-1:exon:14238;Parent=Msa0417270-mRNA-1
chr3_2 exon 64377041 64377104 64377041 ID=Msa0417270-mRNA-1:exon:14239;Parent=Msa0417270-mRNA-1
chr3_2 exon 64377210 64377345 64377210 ID=Msa0417270-mRNA-1:exon:14240;Parent=Msa0417270-mRNA-1
chr3_2 exon 64377507 64377612 64377507 ID=Msa0417270-mRNA-1:exon:14241;Parent=Msa0417270-mRNA-1
chr3_2 exon 64377709 64377900 64377709 ID=Msa0417270-mRNA-1:exon:14242;Parent=Msa0417270-mRNA-1
chr3_2 exon 64377955 64378059 64377955 ID=Msa0417270-mRNA-1:exon:14243;Parent=Msa0417270-mRNA-1
chr3_2 exon 64378280 64378362 64378280 ID=Msa0417270-mRNA-1:exon:14244;Parent=Msa0417270-mRNA-1
chr3_2 exon 64378442 64378566 64378442 ID=Msa0417270-mRNA-1:exon:14245;Parent=Msa0417270-mRNA-1
chr3_2 exon 64379310 64379456 64379310 ID=Msa0417270-mRNA-1:exon:14246;Parent=Msa0417270-mRNA-1
chr3_2 exon 64379475 64379597 64379475 ID=Msa0417270-mRNA-1:exon:14247;Parent=Msa0417270-mRNA-1
chr3_2 exon 64380884 64380986 64380884 ID=Msa0417270-mRNA-1:exon:14248;Parent=Msa0417270-mRNA-1
chr3_2 exon 64381213 64381448 64381213 ID=Msa0417270-mRNA-1:exon:14249;Parent=Msa0417270-mRNA-1
chr3_2 five_prime_UTR 64374827 64374973 64374827 ID=Msa0417270-mRNA-1:five_prime_utr;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64374974 64375080 64374974 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64375173 64375278 64375173 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64377041 64377104 64377041 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64377210 64377345 64377210 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64377507 64377612 64377507 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64377709 64377900 64377709 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64377955 64378059 64377955 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64378280 64378362 64378280 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64378442 64378566 64378442 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64379310 64379456 64379310 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64379475 64379597 64379475 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 CDS 64380884 64380903 64380884 ID=Msa0417270-mRNA-1:cds;Parent=Msa0417270-mRNA-1
chr3_2 three_prime_UTR 64380904 64380986 64380904 ID=Msa0417270-mRNA-1:three_prime_utr;Parent=Msa0417270-mRNA-1
chr3_2 three_prime_UTR 64381213 64381448 64381213 ID=Msa0417270-mRNA-1:three_prime_utr;Parent=Msa0417270-mRNA-1
Gene Sequence

>Msa0417270

ATGGCAGAAGATGGTATGAAGAAGATGAATGACGATGTCGACGCAGTTCAGTCTCAGATTGAAACCGCCATGCGCTCTCGCGTTTCTCACTTCAAGCAACAAGCCGATTCTTTGACATTTGCAAGTGTTCGTAGATTGCTCGAGAAAGATTTAGGGTTTGACGAGTTTTCTTTGGATTCTCACAAAAAATTTATCAAACAATCTTTAGACAAGTGCTTAGGAGAGGCTGGTGATGACGATGATGCCACAAAGACGTCTGAGGAGGACGGGGAAAAAGGTCTGCTTAAAGAACAAAAGGGGGGTAAACAAGAAACCAAGATAGCAGAAGGCAATGGGAAAAAAATAGTTCCAAATGAGACCCTAATTAAGAAAGCTATTAAAAAAAGATCTTCATACCTCAAGGCTAATGCAGAAAATGTAACTTTGGGTAGTCTTCGCCGATTATTGGAGGAAGATCTTAAACTTGATAAATTTTCTCTGGATCCCTTTAAGAAGTTTATAAGTAAAGAGCTTGATGAGGTATTAATGTCTTCTGAAGTTCCGGAACCTGCAGAAAGTGCTAAGAAAATTGTTAAGAAGAAACCTGATACTAAAGCAACTAAAAAGGTCAGTGCTGAAGATAACTCTGATACTTCAGATGAAGAGAGTGAAGAGGAAGATGAAGTCAAACCTAAAAAAAAAAGTGTTCCAAAAGGCAAGATGCAGACTCCTGTCAAGCCTGATAAAGCAGCATCAGAAGACAATAGTGATGCAGAAGACGATGGAAAAAACTCTGAAGATGATCAGTCCCATTCGTCAGCAGAGAATACTACCAAGAAGAAACAAGTTTCAACTCCAACTCCTGTGTACAGTAAACGTGTGGAGCACTTGAAATCTGTTATTAAAGCATGTGGGATGAGTGTTCCTCCCGTTATTTATAAAAAAGTCAAGCAGGTCCCTGAAAACAAACGGGACGGACAACTAATTAAAGAATTGGAGGAAATACTATCTAGAGAAGGCTTGTCTTCAAATCCATCTGAGAAGGAAATCAAAGAAGTAAATAGGAAGAAGGCACGGGCCAAGGAACTTGAGGGTATTGATATGAGTAATATTGTGTCAAGTACACGTAGAAGGGCGACGATTAGTTTTGCGGCTCCTCCACCACCAAAGCCCAAGATTCCAGTGGAAACTAGTAGTGATAATGACAACGATGATGAAGGCAAAGAAAATGACGAGGAGGAAGAAGATGAAGAAGATGAAGAAGAGGAGGATAGCAGTGATGATGATGGAAGTGAGAGTGAAGAATTTAATGCGGATGAAGAGGACAGTGATTGA

Protein sequence

>Msa0417270

MAEDGMKKMNDDVDAVQSQIETAMRSRVSHFKQQADSLTFASVRRLLEKDLGFDEFSLDSHKKFIKQSLDKCLGEAGDDDDATKTSEEDGEKGLLKEQKGGKQETKIAEGNGKKIVPNETLIKKAIKKRSSYLKANAENVTLGSLRRLLEEDLKLDKFSLDPFKKFISKELDEVLMSSEVPEPAESAKKIVKKKPDTKATKKVSAEDNSDTSDEESEEEDEVKPKKKSVPKGKMQTPVKPDKAASEDNSDAEDDGKNSEDDQSHSSAENTTKKKQVSTPTPVYSKRVEHLKSVIKACGMSVPPVIYKKVKQVPENKRDGQLIKELEEILSREGLSSNPSEKEIKEVNRKKARAKELEGIDMSNIVSSTRRRATISFAAPPPPKPKIPVETSSDNDNDDEGKENDEEEEDEEDEEEEDSSDDDGSESEEFNADEEDSD*