Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765130 | PNX79928.1 | 66.176 | 68 | 23 | 0 | 47 | 114 | 6 | 73 | 1.34e-22 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765130 | sp|Q0IV63|DRB7_ORYSJ | 47.872 | 94 | 38 | 1 | 21 | 114 | 13 | 95 | 1.14e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765130 | A0A2K3LN19 | 66.176 | 68 | 23 | 0 | 47 | 114 | 6 | 73 | 6.40e-23 | 94.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015100 | Msa0765130 | 0.806481 | 8.057250e-50 | -8.615850e-47 |
| Msa0049770 | Msa0765130 | 0.803592 | 3.239154e-49 | -8.615850e-47 |
| Msa0051200 | Msa0765130 | 0.810188 | 1.305145e-50 | -8.615850e-47 |
| Msa0051460 | Msa0765130 | 0.820876 | 5.439072e-53 | -8.615850e-47 |
| Msa0077390 | Msa0765130 | 0.809439 | 1.891618e-50 | -8.615850e-47 |
| Msa0088550 | Msa0765130 | 0.814400 | 1.571036e-51 | -8.615850e-47 |
| Msa0101840 | Msa0765130 | 0.800232 | 1.587166e-48 | -8.615850e-47 |
| Msa0629890 | Msa0765130 | 0.808724 | 2.690850e-50 | -8.615850e-47 |
| Msa0640380 | Msa0765130 | 0.825570 | 4.361133e-54 | -8.615850e-47 |
| Msa0641020 | Msa0765130 | 0.831536 | 1.578820e-55 | -8.615850e-47 |
| Msa0678820 | Msa0765130 | 0.834387 | 3.086223e-56 | -8.615850e-47 |
| Msa0690440 | Msa0765130 | 0.808544 | 2.939349e-50 | -8.615850e-47 |
| Msa0718240 | Msa0765130 | 0.850042 | 2.193123e-60 | -8.615850e-47 |
| Msa0722930 | Msa0765130 | 0.806298 | 8.805781e-50 | -8.615850e-47 |
| Msa0724550 | Msa0765130 | 0.983919 | 4.456430e-159 | -8.615850e-47 |
| Msa0733400 | Msa0765130 | 0.822665 | 2.097376e-53 | -8.615850e-47 |
| Msa0765130 | Msa0811940 | 0.812006 | 5.267395e-51 | -8.615850e-47 |
| Msa0765130 | Msa0839230 | 0.822006 | 2.983707e-53 | -8.615850e-47 |
| Msa0765130 | Msa0839330 | 0.800556 | 1.363839e-48 | -8.615850e-47 |
| Msa0765130 | Msa0843280 | 0.808160 | 3.549796e-50 | -8.615850e-47 |
| Msa0765130 | Msa0883450 | 0.800504 | 1.397290e-48 | -8.615850e-47 |
| Msa0765130 | Msa0883660 | 0.810340 | 1.210360e-50 | -8.615850e-47 |
| Msa0765130 | Msa0916170 | 0.809773 | 1.602820e-50 | -8.615850e-47 |
| Msa0765130 | Msa0916590 | 0.808822 | 2.564511e-50 | -8.615850e-47 |
| Msa0765130 | Msa1008340 | 0.801735 | 7.825189e-49 | -8.615850e-47 |
| Msa0765130 | Msa1037710 | 0.840024 | 1.115229e-57 | -8.615850e-47 |
| Msa0765130 | Msa1054410 | 0.819064 | 1.412850e-52 | -8.615850e-47 |
| Msa0765130 | Msa1130350 | 0.816241 | 6.120094e-52 | -8.615850e-47 |
| Msa0765130 | Msa1139240 | 0.806991 | 6.286089e-50 | -8.615850e-47 |
| Msa0765130 | Msa1204980 | -0.810656 | 1.034383e-50 | -8.615850e-47 |
| Msa0765130 | Msa1205010 | -0.806944 | 6.430652e-50 | -8.615850e-47 |
| Msa0765130 | Msa1208340 | 0.805975 | 1.029860e-49 | -8.615850e-47 |
| Msa0765130 | Msa1256540 | -0.809183 | 2.146373e-50 | -8.615850e-47 |
| Msa0765130 | Msa1279850 | 0.801224 | 9.958974e-49 | -8.615850e-47 |
| Msa0765130 | Msa1279860 | 0.811647 | 6.307146e-51 | -8.615850e-47 |
| Msa0765130 | Msa1279870 | 0.806903 | 6.561928e-50 | -8.615850e-47 |
| Msa0765130 | Msa1296960 | -0.804391 | 2.209599e-49 | -8.615850e-47 |
| Msa0765130 | Msa1308480 | 0.804564 | 2.033605e-49 | -8.615850e-47 |
| Msa0765130 | Msa1377070 | 0.814420 | 1.554806e-51 | -8.615850e-47 |
| Msa0765130 | Msa1413840 | 0.812867 | 3.416285e-51 | -8.615850e-47 |
| Msa0765130 | Msa1438820 | 0.815161 | 1.065004e-51 | -8.615850e-47 |
| Msa0765130 | Msa1441200 | 0.813946 | 1.978879e-51 | -8.615850e-47 |
| Msa0765130 | Msa1445250 | 0.814564 | 1.444845e-51 | -8.615850e-47 |
| Msa0765130 | Msa1458550 | 0.817142 | 3.845086e-52 | -8.615850e-47 |
| Msa0135360 | Msa0765130 | 0.812285 | 4.579705e-51 | -8.615850e-47 |
| Msa0143920 | Msa0765130 | 0.822549 | 2.231730e-53 | -8.615850e-47 |
| Msa0153440 | Msa0765130 | 0.805612 | 1.227396e-49 | -8.615850e-47 |
| Msa0178350 | Msa0765130 | 0.800066 | 1.715686e-48 | -8.615850e-47 |
| Msa0179860 | Msa0765130 | 0.817368 | 3.419951e-52 | -8.615850e-47 |
| Msa0185640 | Msa0765130 | -0.804381 | 2.219785e-49 | -8.615850e-47 |
| Msa0232860 | Msa0765130 | 0.803755 | 2.996011e-49 | -8.615850e-47 |
| Msa0366470 | Msa0765130 | 0.810031 | 1.411047e-50 | -8.615850e-47 |
| Msa0381180 | Msa0765130 | 0.820338 | 7.231756e-53 | -8.615850e-47 |
| Msa0389360 | Msa0765130 | 0.816824 | 4.531398e-52 | -8.615850e-47 |
| Msa0438050 | Msa0765130 | 0.831576 | 1.543663e-55 | -8.615850e-47 |
| Msa0465680 | Msa0765130 | -0.813019 | 3.162893e-51 | -8.615850e-47 |
| Msa0342340 | Msa0765130 | -0.819016 | 1.448761e-52 | -8.615850e-47 |
| Msa0528970 | Msa0765130 | 0.818030 | 2.424373e-52 | -8.615850e-47 |
| Msa0543900 | Msa0765130 | 0.822316 | 2.529134e-53 | -8.615850e-47 |
| Msa0599770 | Msa0765130 | 0.813277 | 2.776297e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765130 | MtrunA17_Chr3g0132821 | 64.706 | 68 | 24 | 0 | 47 | 114 | 11 | 78 | 5.33e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765130 | AT1G09700.2 | 57.353 | 68 | 29 | 0 | 47 | 114 | 10 | 77 | 2.40e-19 | 80.9 |
| Msa0765130 | AT1G09700.1 | 57.353 | 68 | 29 | 0 | 47 | 114 | 10 | 77 | 6.75e-19 | 80.9 |
Find 23 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCTGAAAGAAAGTTTA+TGG | 0.183803 | 5_2:-25626426 | None:intergenic |
| CTCTCCATAAACTTTCTTTC+AGG | 0.227895 | 5_2:+25626422 | Msa0765130:CDS |
| CTTCCAGCACTGCTCTCAAA+TGG | 0.438969 | 5_2:+25623531 | Msa0765130:CDS |
| ATTCCATTTGAGAGCAGTGC+TGG | 0.445915 | 5_2:-25623534 | None:intergenic |
| TGTTATCAACGTCGTTCTGC+CGG | 0.463799 | 5_2:+25623494 | Msa0765130:CDS |
| CACTGCTCTCAAATGGAATA+CGG | 0.478562 | 5_2:+25623538 | Msa0765130:CDS |
| CAGAATTTCGTTGGCAACGG+CGG | 0.478941 | 5_2:+25623566 | Msa0765130:CDS |
| TCTGTGCATACTCTTGCAAT+CGG | 0.492017 | 5_2:-25626354 | None:intergenic |
| CAAAACAACATGGTCGGTCC+TGG | 0.496611 | 5_2:+25623468 | Msa0765130:CDS |
| GCGCAGAATTTCGTTGGCAA+CGG | 0.546109 | 5_2:+25623563 | Msa0765130:CDS |
| ACGGCAGCGCAGAATTTCGT+TGG | 0.551421 | 5_2:+25623557 | Msa0765130:CDS |
| GTGTATACAACTACTAGTGA+AGG | 0.573758 | 5_2:+25626397 | Msa0765130:CDS |
| GGAAGGTCGGAAGTGCATGC+CGG | 0.574445 | 5_2:-25623513 | None:intergenic |
| GCAATCGGTTCTTGAACATG+TGG | 0.602573 | 5_2:-25626339 | None:intergenic |
| CATTTGAGAGCAGTGCTGGA+AGG | 0.609699 | 5_2:-25623530 | None:intergenic |
| TGAGAGCAGTGCTGGAAGGT+CGG | 0.611562 | 5_2:-25623526 | None:intergenic |
| ACGACGTTGATAACAACACC+AGG | 0.631409 | 5_2:-25623486 | None:intergenic |
| TGTATACAACTACTAGTGAA+GGG | 0.642795 | 5_2:+25626398 | Msa0765130:CDS |
| TTAGATCAAAACAACATGGT+CGG | 0.653159 | 5_2:+25623462 | Msa0765130:CDS |
| CTGAAAGAAAGTTTATGGAG+AGG | 0.658722 | 5_2:-25626421 | None:intergenic |
| TCACTAGTAGTTGTATACAC+AGG | 0.686986 | 5_2:-25626394 | None:intergenic |
| GTTCTTAGATCAAAACAACA+TGG | 0.688664 | 5_2:+25623458 | Msa0765130:CDS |
| AGTAGTTGTATACACAGGTG+CGG | 0.711484 | 5_2:-25626389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+GGG | - | chr5_2:25623825-25623844 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr5_2:25623826-25623845 | None:intergenic | 0.0% |
| !! | ACACATATATATATATATAT+AGG | + | chr5_2:25623974-25623993 | Msa0765130:intron | 10.0% |
| !! | AAATTAAAAAATGGATATAT+AGG | - | chr5_2:25624297-25624316 | None:intergenic | 10.0% |
| !! | ATAGCAATTAAATTAAAAAA+TGG | - | chr5_2:25624306-25624325 | None:intergenic | 10.0% |
| !!! | TTTTAATTTAATTGCTATTA+AGG | + | chr5_2:25624308-25624327 | Msa0765130:intron | 10.0% |
| !!! | TAGAATTAATTTTGAAATTT+GGG | - | chr5_2:25624586-25624605 | None:intergenic | 10.0% |
| !! | ATCTTTAAATAAAAAATGAA+CGG | - | chr5_2:25625035-25625054 | None:intergenic | 10.0% |
| !! | CTATATATATATATATATAG+AGG | - | chr5_2:25625111-25625130 | None:intergenic | 10.0% |
| !! | CTCTATATATATATATATAT+AGG | + | chr5_2:25625109-25625128 | Msa0765130:intron | 10.0% |
| !! | CATTAATTAATTTATGTATT+TGG | + | chr5_2:25625877-25625896 | Msa0765130:intron | 10.0% |
| !! | TTATTAGAAATAATGTAGTA+GGG | - | chr5_2:25624117-25624136 | None:intergenic | 15.0% |
| !! | TTTATTAGAAATAATGTAGT+AGG | - | chr5_2:25624118-25624137 | None:intergenic | 15.0% |
| !!! | AGATTCAATTATTTTATTGT+GGG | - | chr5_2:25624169-25624188 | None:intergenic | 15.0% |
| !!! | TAGATTCAATTATTTTATTG+TGG | - | chr5_2:25624170-25624189 | None:intergenic | 15.0% |
| !! | ATATGATAAAAATTGAAACT+TGG | + | chr5_2:25624358-25624377 | Msa0765130:intron | 15.0% |
| !!! | TTTTTTTTCTTTTTTCATCA+TGG | - | chr5_2:25624562-25624581 | None:intergenic | 15.0% |
| !!! | GTAGAATTAATTTTGAAATT+TGG | - | chr5_2:25624587-25624606 | None:intergenic | 15.0% |
| !! | TAAAATACTTCTTAATTCAA+GGG | - | chr5_2:25625400-25625419 | None:intergenic | 15.0% |
| !! | TTAAAATACTTCTTAATTCA+AGG | - | chr5_2:25625401-25625420 | None:intergenic | 15.0% |
| !!! | GAATTAAGAAGTATTTTAAA+AGG | + | chr5_2:25625402-25625421 | Msa0765130:intron | 15.0% |
| !! | CGATTATATATTATATATAG+TGG | - | chr5_2:25625513-25625532 | None:intergenic | 15.0% |
| !!! | ATATAATCGATTTGAAAATT+TGG | + | chr5_2:25625524-25625543 | Msa0765130:intron | 15.0% |
| !!! | TATAATCGATTTGAAAATTT+GGG | + | chr5_2:25625525-25625544 | Msa0765130:intron | 15.0% |
| !! | TAAAATACTTCTTAATTCAA+GGG | - | chr5_2:25625400-25625419 | None:intergenic | 15.0% |
| !! | TTAAAATACTTCTTAATTCA+AGG | - | chr5_2:25625401-25625420 | None:intergenic | 15.0% |
| !!! | GAATTAAGAAGTATTTTAAA+AGG | + | chr5_2:25625402-25625421 | Msa0765130:intron | 15.0% |
| !!! | TTAATTTATGTATTTGGTTT+AGG | + | chr5_2:25625883-25625902 | Msa0765130:intron | 15.0% |
| !!! | TATAATCGATTTGAAAATTT+GGG | + | chr5_2:25625525-25625544 | Msa0765130:intron | 15.0% |
| !! | GACAATAAAAATAGAGAAAA+AGG | + | chr5_2:25623720-25623739 | Msa0765130:intron | 20.0% |
| !!! | ATTTTTTGTCAAAAGTAGAT+AGG | + | chr5_2:25623745-25623764 | Msa0765130:intron | 20.0% |
| !! | GAAGATGAAAAGATAAAAAT+GGG | - | chr5_2:25624141-25624160 | None:intergenic | 20.0% |
| !! | TTATTTGATAAGCTGTAAAT+TGG | + | chr5_2:25624256-25624275 | Msa0765130:intron | 20.0% |
| !!! | ATTTTTATCATATAGAGTGA+TGG | - | chr5_2:25624351-25624370 | None:intergenic | 20.0% |
| !!! | AATGGTTTCATTTTTTTTAC+AGG | - | chr5_2:25624425-25624444 | None:intergenic | 20.0% |
| !!! | GTTTGAATGTAATGTTTTAA+TGG | - | chr5_2:25624443-25624462 | None:intergenic | 20.0% |
| !! | ATAAAAGACACATTCATAAA+AGG | + | chr5_2:25625278-25625297 | Msa0765130:intron | 20.0% |
| !! | AAAATACTTCTTAATTCAAG+GGG | - | chr5_2:25625399-25625418 | None:intergenic | 20.0% |
| !!! | AGTATTTTAAAAGGAACATT+TGG | + | chr5_2:25625411-25625430 | Msa0765130:intron | 20.0% |
| !!! | GTATTTTAAAAGGAACATTT+GGG | + | chr5_2:25625412-25625431 | Msa0765130:intron | 20.0% |
| !! | TTAGAATATATGCATTAGTA+CGG | - | chr5_2:25625464-25625483 | None:intergenic | 20.0% |
| !! | AAAATACTTCTTAATTCAAG+GGG | - | chr5_2:25625399-25625418 | None:intergenic | 20.0% |
| !!! | AGTATTTTAAAAGGAACATT+TGG | + | chr5_2:25625411-25625430 | Msa0765130:intron | 20.0% |
| !!! | GTATTTTAAAAGGAACATTT+GGG | + | chr5_2:25625412-25625431 | Msa0765130:intron | 20.0% |
| !! | TTAGAATATATGCATTAGTA+AGG | - | chr5_2:25625464-25625483 | None:intergenic | 20.0% |
| !!! | GTATAATCGATTTGAAAATT+TGG | + | chr5_2:25625979-25625998 | Msa0765130:intron | 20.0% |
| !! | ATAAATGAATCAAATTGTGA+GGG | - | chr5_2:25626253-25626272 | None:intergenic | 20.0% |
| !! | AATAAATGAATCAAATTGTG+AGG | - | chr5_2:25626254-25626273 | None:intergenic | 20.0% |
| !! | GTGGTTTGAAATTACTTAAA+AGG | + | chr5_2:25623684-25623703 | Msa0765130:intron | 25.0% |
| !! | ACCATCAGATCTAAAATAAA+TGG | + | chr5_2:25624050-25624069 | Msa0765130:intron | 25.0% |
| !!! | ACCATTTATTTTAGATCTGA+TGG | - | chr5_2:25624054-25624073 | None:intergenic | 25.0% |
| ! | AGATACATGTGTTTCTTAAA+TGG | - | chr5_2:25624092-25624111 | None:intergenic | 25.0% |
| ! | GGAAGATGAAAAGATAAAAA+TGG | - | chr5_2:25624142-25624161 | None:intergenic | 25.0% |
| !!! | AATTATTTTATTGTGGGTTG+AGG | - | chr5_2:25624163-25624182 | None:intergenic | 25.0% |
| ! | CTAAATCAATTTATGAGCAA+TGG | - | chr5_2:25624486-25624505 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTTTCATCATGG+AGG | - | chr5_2:25624559-25624578 | None:intergenic | 25.0% |
| ! | CAAAATTAATTCTACACTTG+TGG | + | chr5_2:25624592-25624611 | Msa0765130:intron | 25.0% |
| ! | GCAAAATCAATTGAAAGAAA+TGG | + | chr5_2:25624918-25624937 | Msa0765130:intron | 25.0% |
| ! | AAATCAATTGAAAGAAATGG+TGG | + | chr5_2:25624921-25624940 | Msa0765130:intron | 25.0% |
| !! | GTTTTTGTTCCAAAACAAAA+AGG | + | chr5_2:25625740-25625759 | Msa0765130:intron | 25.0% |
| !! | AGGGAGTATATTATATATAG+TGG | - | chr5_2:25625819-25625838 | None:intergenic | 25.0% |
| ! | TATATATAATATACTCCCTC+CGG | + | chr5_2:25625820-25625839 | Msa0765130:intron | 25.0% |
| ! | ATCAACTTTCTCTTGTAAAT+AGG | + | chr5_2:25625946-25625965 | Msa0765130:intron | 25.0% |
| !! | TTAATATTTTACCCCTTTCT+TGG | + | chr5_2:25626174-25626193 | Msa0765130:intron | 25.0% |
| !! | TAATATTTTACCCCTTTCTT+GGG | + | chr5_2:25626175-25626194 | Msa0765130:intron | 25.0% |
| GTTCTTAGATCAAAACAACA+TGG | + | chr5_2:25623458-25623477 | Msa0765130:CDS | 30.0% | |
| TTAGATCAAAACAACATGGT+CGG | + | chr5_2:25623462-25623481 | Msa0765130:CDS | 30.0% | |
| ATGCCTTCTTTATATGAGAA+TGG | + | chr5_2:25624012-25624031 | Msa0765130:intron | 30.0% | |
| TCACCATTCTCATATAAAGA+AGG | - | chr5_2:25624018-25624037 | None:intergenic | 30.0% | |
| ! | GCCTTTATTTATGAAGAACA+CGG | - | chr5_2:25624509-25624528 | None:intergenic | 30.0% |
| AACAACTTCTATCTGTGTTT+GGG | - | chr5_2:25624715-25624734 | None:intergenic | 30.0% | |
| AAACAACTTCTATCTGTGTT+TGG | - | chr5_2:25624716-25624735 | None:intergenic | 30.0% | |
| AAGGAATGATGAGATGAATA+TGG | + | chr5_2:25624962-25624981 | Msa0765130:intron | 30.0% | |
| AGGAATGATGAGATGAATAT+GGG | + | chr5_2:25624963-25624982 | Msa0765130:intron | 30.0% | |
| ! | TTTTGTTACAAGCCACAATT+TGG | + | chr5_2:25625133-25625152 | Msa0765130:intron | 30.0% |
| ! | TTTTAACAAGTCACACCTTA+AGG | + | chr5_2:25625163-25625182 | Msa0765130:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | - | chr5_2:25625181-25625200 | None:intergenic | 30.0% | |
| ATATATATGTGTGTGTGTGT+GGG | - | chr5_2:25623898-25623917 | None:intergenic | 30.0% | |
| TATATATATGTGTGTGTGTG+TGG | - | chr5_2:25623899-25623918 | None:intergenic | 30.0% | |
| ! | AAAAGGAACATTTGGGTTTA+TGG | + | chr5_2:25625419-25625438 | Msa0765130:intron | 30.0% |
| GTTTATGGTCCAAAACAAAA+AGG | + | chr5_2:25625434-25625453 | Msa0765130:intron | 30.0% | |
| !!! | TTGGGAAGCATTTTAAGATA+AGG | + | chr5_2:25625543-25625562 | Msa0765130:intron | 30.0% |
| !! | TAAGGTACACCTTTTTGTTT+TGG | - | chr5_2:25625752-25625771 | None:intergenic | 30.0% |
| TTGTCTCATGTAAATAGAAC+CGG | - | chr5_2:25625842-25625861 | None:intergenic | 30.0% | |
| !!! | TTGGGAAGCATTTTAAGATA+AGG | + | chr5_2:25625543-25625562 | Msa0765130:intron | 30.0% |
| ACACAAAAATCAACTTTCCA+AGG | + | chr5_2:25626090-25626109 | Msa0765130:intron | 30.0% | |
| CACAAAAATCAACTTTCCAA+GGG | + | chr5_2:25626091-25626110 | Msa0765130:intron | 30.0% | |
| TGTATACAACTACTAGTGAA+GGG | + | chr5_2:25626398-25626417 | Msa0765130:CDS | 30.0% | |
| TTGACCTGAAAGAAAGTTTA+TGG | - | chr5_2:25626429-25626448 | None:intergenic | 30.0% | |
| !! | GACTGAATTTTCTAAGAAGA+AGG | + | chr5_2:25626483-25626502 | Msa0765130:CDS | 30.0% |
| AGAGAGAGAAACTCTTAATG+TGG | + | chr5_2:25623665-25623684 | Msa0765130:intron | 35.0% | |
| TGTCAAAAGTAGATAGGTGT+AGG | + | chr5_2:25623751-25623770 | Msa0765130:intron | 35.0% | |
| !! | ACACCTTCTAGAATTGAAGT+GGG | + | chr5_2:25623784-25623803 | Msa0765130:intron | 35.0% |
| TTATCATATAGAGTGATGGC+TGG | - | chr5_2:25624347-25624366 | None:intergenic | 35.0% | |
| TATGAGCAATGGTGAGAATT+TGG | - | chr5_2:25624475-25624494 | None:intergenic | 35.0% | |
| GCCGTGTTCTTCATAAATAA+AGG | + | chr5_2:25624505-25624524 | Msa0765130:intron | 35.0% | |
| ATTGAAAGAAAACACCAGTG+CGG | - | chr5_2:25624531-25624550 | None:intergenic | 35.0% | |
| ! | CACTGGTGTTTTCTTTCAAT+TGG | + | chr5_2:25624531-25624550 | Msa0765130:intron | 35.0% |
| GATTTGTAACGTATACAACG+AGG | + | chr5_2:25624763-25624782 | Msa0765130:intron | 35.0% | |
| GCTCTATAGATCAATAGGAA+GGG | + | chr5_2:25624848-25624867 | Msa0765130:intron | 35.0% | |
| CTCTATAGATCAATAGGAAG+GGG | + | chr5_2:25624849-25624868 | Msa0765130:intron | 35.0% | |
| AAGAACAACATGATCAACCA+TGG | + | chr5_2:25624874-25624893 | Msa0765130:intron | 35.0% | |
| !! | TTGAAAGAAATGGTGGATGA+AGG | + | chr5_2:25624928-25624947 | Msa0765130:intron | 35.0% |
| AGATGAATATGGGTGAGAAT+TGG | + | chr5_2:25624973-25624992 | Msa0765130:intron | 35.0% | |
| GATGAATATGGGTGAGAATT+GGG | + | chr5_2:25624974-25624993 | Msa0765130:intron | 35.0% | |
| TAAAAGACACCACCAAATTG+TGG | - | chr5_2:25625148-25625167 | None:intergenic | 35.0% | |
| ACACCTTCATGAAAGTAAGT+TGG | + | chr5_2:25625223-25625242 | Msa0765130:intron | 35.0% | |
| ACACCAACTTACTTTCATGA+AGG | - | chr5_2:25625229-25625248 | None:intergenic | 35.0% | |
| !! | TACGGTACACCTTTTTGTTT+TGG | - | chr5_2:25625446-25625465 | None:intergenic | 35.0% |
| !!! | GCATTTTAAGATAAGGCTGA+AGG | + | chr5_2:25625550-25625569 | Msa0765130:intron | 35.0% |
| CTTTCTCTTGTAAATAGGAC+CGG | + | chr5_2:25625951-25625970 | Msa0765130:intron | 35.0% | |
| !!! | GCATTTTAAGATAAGGCTGA+AGG | + | chr5_2:25625550-25625569 | Msa0765130:intron | 35.0% |
| CTTCTAATGACGAATGTTAG+TGG | + | chr5_2:25626138-25626157 | Msa0765130:intron | 35.0% | |
| ATGAATCAAATTGTGAGGGT+TGG | - | chr5_2:25626249-25626268 | None:intergenic | 35.0% | |
| TCACTAGTAGTTGTATACAC+AGG | - | chr5_2:25626397-25626416 | None:intergenic | 35.0% | |
| GTGTATACAACTACTAGTGA+AGG | + | chr5_2:25626397-25626416 | Msa0765130:CDS | 35.0% | |
| CTGAAAGAAAGTTTATGGAG+AGG | - | chr5_2:25626424-25626443 | None:intergenic | 35.0% | |
| CTCTCCATAAACTTTCTTTC+AGG | + | chr5_2:25626422-25626441 | Msa0765130:CDS | 35.0% | |
| CACTGCTCTCAAATGGAATA+CGG | + | chr5_2:25623538-25623557 | Msa0765130:CDS | 40.0% | |
| ATTGTAGTAACGCACAACAC+AGG | - | chr5_2:25623613-25623632 | None:intergenic | 40.0% | |
| TGTGTTGTGCGTTACTACAA+TGG | + | chr5_2:25623612-25623631 | Msa0765130:intron | 40.0% | |
| !! | CACACCTTCTAGAATTGAAG+TGG | + | chr5_2:25623783-25623802 | Msa0765130:intron | 40.0% |
| ACACCCACTTCAATTCTAGA+AGG | - | chr5_2:25623790-25623809 | None:intergenic | 40.0% | |
| TTCATAAATAAAGGCCGCAC+TGG | + | chr5_2:25624514-25624533 | Msa0765130:intron | 40.0% | |
| ! | TGTGTTTGGGATGTGAATTG+GGG | - | chr5_2:25624702-25624721 | None:intergenic | 40.0% |
| ! | CTGTGTTTGGGATGTGAATT+GGG | - | chr5_2:25624703-25624722 | None:intergenic | 40.0% |
| ! | TCTGTGTTTGGGATGTGAAT+TGG | - | chr5_2:25624704-25624723 | None:intergenic | 40.0% |
| TCTGATGAGATGTTACGTGT+CGG | + | chr5_2:25624810-25624829 | Msa0765130:intron | 40.0% | |
| TCTGGGCTCTATAGATCAAT+AGG | + | chr5_2:25624843-25624862 | Msa0765130:intron | 40.0% | |
| GGCTCTATAGATCAATAGGA+AGG | + | chr5_2:25624847-25624866 | Msa0765130:intron | 40.0% | |
| GATGAAGGTTGCTACATCAA+AGG | + | chr5_2:25624943-25624962 | Msa0765130:intron | 40.0% | |
| TGTTACAAGCCACAATTTGG+TGG | + | chr5_2:25625136-25625155 | Msa0765130:intron | 40.0% | |
| CTTAATTCAAGGGGCAGTAA+CGG | - | chr5_2:25625390-25625409 | None:intergenic | 40.0% | |
| CTCATGTAAATAGAACCGGA+GGG | - | chr5_2:25625838-25625857 | None:intergenic | 40.0% | |
| TCTCATGTAAATAGAACCGG+AGG | - | chr5_2:25625839-25625858 | None:intergenic | 40.0% | |
| CAAATCGATTATACTCCCTC+CGG | - | chr5_2:25625973-25625992 | None:intergenic | 40.0% | |
| GAAGGTTTGAGAAGCAAGTT+TGG | + | chr5_2:25626023-25626042 | Msa0765130:intron | 40.0% | |
| GCAAGTTTGGATTTCTTCCA+AGG | + | chr5_2:25626036-25626055 | Msa0765130:intron | 40.0% | |
| AAATCAACTTTCCAAGGGCT+TGG | + | chr5_2:25626096-25626115 | Msa0765130:intron | 40.0% | |
| AGGATTCAAACCCAAGAAAG+GGG | - | chr5_2:25626188-25626207 | None:intergenic | 40.0% | |
| GAGGATTCAAACCCAAGAAA+GGG | - | chr5_2:25626189-25626208 | None:intergenic | 40.0% | |
| TGAGCTAAGGGAAAATGAGT+TGG | - | chr5_2:25626211-25626230 | None:intergenic | 40.0% | |
| TCTGTGCATACTCTTGCAAT+CGG | - | chr5_2:25626357-25626376 | None:intergenic | 40.0% | |
| AGTAGTTGTATACACAGGTG+CGG | - | chr5_2:25626392-25626411 | None:intergenic | 40.0% | |
| !! | ACGACGTTGATAACAACACC+AGG | - | chr5_2:25623489-25623508 | None:intergenic | 45.0% |
| TGTTATCAACGTCGTTCTGC+CGG | + | chr5_2:25623494-25623513 | Msa0765130:CDS | 45.0% | |
| ATTCCATTTGAGAGCAGTGC+TGG | - | chr5_2:25623537-25623556 | None:intergenic | 45.0% | |
| AAACATCAGCCACGCGTTAA+TGG | - | chr5_2:25624238-25624257 | None:intergenic | 45.0% | |
| ! | GTGTTTGGGATGTGAATTGG+GGG | - | chr5_2:25624701-25624720 | None:intergenic | 45.0% |
| ACGTATACAACGAGGAGAGA+AGG | + | chr5_2:25624771-25624790 | Msa0765130:intron | 45.0% | |
| GTGTCGGATCTGCAAATTCT+GGG | + | chr5_2:25624826-25624845 | Msa0765130:intron | 45.0% | |
| CCAGAAACATTCGCTATCCA+TGG | - | chr5_2:25624894-25624913 | None:intergenic | 45.0% | |
| CCATGGATAGCGAATGTTTC+TGG | + | chr5_2:25624891-25624910 | Msa0765130:intron | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | + | chr5_2:25625954-25625973 | Msa0765130:intron | 45.0% | |
| CTCTTGTAAATAGGACCGGA+GGG | + | chr5_2:25625955-25625974 | Msa0765130:intron | 45.0% | |
| AACTAGTAGCACATGCCACA+TGG | - | chr5_2:25626067-25626086 | None:intergenic | 45.0% | |
| GGAGGATTCAAACCCAAGAA+AGG | - | chr5_2:25626190-25626209 | None:intergenic | 45.0% | |
| ! | GCTAAGGGAAAATGAGTTGG+AGG | - | chr5_2:25626208-25626227 | None:intergenic | 45.0% |
| ! | GCAATCGGTTCTTGAACATG+TGG | - | chr5_2:25626342-25626361 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr5_2:25623824-25623843 | None:intergenic | 5.0% |
| !! | TCTATATATATATATATATA+GGG | + | chr5_2:25625110-25625129 | Msa0765130:intron | 5.0% |
| CAAAACAACATGGTCGGTCC+TGG | + | chr5_2:25623468-25623487 | Msa0765130:CDS | 50.0% | |
| ! | CATTTGAGAGCAGTGCTGGA+AGG | - | chr5_2:25623533-25623552 | None:intergenic | 50.0% |
| CTTCCAGCACTGCTCTCAAA+TGG | + | chr5_2:25623531-25623550 | Msa0765130:CDS | 50.0% | |
| GCGCAGAATTTCGTTGGCAA+CGG | + | chr5_2:25623563-25623582 | Msa0765130:CDS | 50.0% | |
| CAGAATTTCGTTGGCAACGG+CGG | + | chr5_2:25623566-25623585 | Msa0765130:CDS | 50.0% | |
| ATCGATCCACCATTAACGCG+TGG | + | chr5_2:25624226-25624245 | Msa0765130:intron | 50.0% | |
| CGTGTCGGATCTGCAAATTC+TGG | + | chr5_2:25624825-25624844 | Msa0765130:intron | 50.0% | |
| TCTTCCAAGGTCCTACCATG+TGG | + | chr5_2:25626049-25626068 | Msa0765130:intron | 50.0% | |
| AGTAGCACATGCCACATGGT+AGG | - | chr5_2:25626063-25626082 | None:intergenic | 50.0% | |
| AGCAAATTGCTCCAAGCCCT+TGG | - | chr5_2:25626110-25626129 | None:intergenic | 50.0% | |
| !! | GCTCAGCTGGTTTGAGCTAA+GGG | - | chr5_2:25626223-25626242 | None:intergenic | 50.0% |
| !! | AGCTCAGCTGGTTTGAGCTA+AGG | - | chr5_2:25626224-25626243 | None:intergenic | 50.0% |
| ! | TGAGAGCAGTGCTGGAAGGT+CGG | - | chr5_2:25623529-25623548 | None:intergenic | 55.0% |
| ACGGCAGCGCAGAATTTCGT+TGG | + | chr5_2:25623557-25623576 | Msa0765130:CDS | 55.0% | |
| ACTACAATGGAGTGAGCGCG+TGG | + | chr5_2:25623625-25623644 | Msa0765130:intron | 55.0% | |
| CTACAATGGAGTGAGCGCGT+GGG | + | chr5_2:25623626-25623645 | Msa0765130:intron | 55.0% | |
| CATCAGCCACGCGTTAATGG+TGG | - | chr5_2:25624235-25624254 | None:intergenic | 55.0% | |
| CATGCCACATGGTAGGACCT+TGG | - | chr5_2:25626056-25626075 | None:intergenic | 55.0% | |
| TGAGGGTTGGATAGCTCAGC+TGG | - | chr5_2:25626236-25626255 | None:intergenic | 55.0% | |
| ! | GGAAGGTCGGAAGTGCATGC+CGG | - | chr5_2:25623516-25623535 | None:intergenic | 60.0% |
| CGGCGCGTAGCTGGAGATTT+GGG | + | chr5_2:25623586-25623605 | Msa0765130:intron | 60.0% | |
| GCGGCGCGTAGCTGGAGATT+TGG | + | chr5_2:25623585-25623604 | Msa0765130:intron | 65.0% | |
| TGGCAACGGCGGCGCGTAGC+TGG | + | chr5_2:25623577-25623596 | Msa0765130:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 25623456 | 25626534 | 25623456 | ID=Msa0765130;Name=Msa0765130 |
| chr5_2 | mRNA | 25623456 | 25626534 | 25623456 | ID=Msa0765130-mRNA-1;Parent=Msa0765130;Name=Msa0765130-mRNA-1;_AED=0.75;_eAED=0.75;_QI=0|0|0|0.5|0|0.5|2|0|114 |
| chr5_2 | exon | 25623456 | 25623591 | 25623456 | ID=Msa0765130-mRNA-1:exon:10324;Parent=Msa0765130-mRNA-1 |
| chr5_2 | exon | 25626326 | 25626534 | 25626326 | ID=Msa0765130-mRNA-1:exon:10325;Parent=Msa0765130-mRNA-1 |
| chr5_2 | CDS | 25623456 | 25623591 | 25623456 | ID=Msa0765130-mRNA-1:cds;Parent=Msa0765130-mRNA-1 |
| chr5_2 | CDS | 25626326 | 25626534 | 25626326 | ID=Msa0765130-mRNA-1:cds;Parent=Msa0765130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
