AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0517490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517490 MtrunA17_Chr3g0129011 97.203 286 8 0 1 286 1 286 0.0 588
Msa0517490 MtrunA17_Chr1g0197631 45.745 188 95 3 66 247 68 254 5.53e-44 153
Msa0517490 MtrunA17_Chr7g0228091 39.773 176 104 2 72 247 314 487 1.85e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517490 AT3G10940.1 72.348 264 66 3 28 286 21 282 7.92e-141 398
Msa0517490 AT3G52180.3 42.927 205 115 2 65 268 66 269 1.80e-46 157
Msa0517490 AT3G52180.2 42.927 205 115 2 65 268 66 269 3.61e-46 157
Msa0517490 AT3G52180.1 42.927 205 115 2 65 268 66 269 4.86e-45 156
Msa0517490 AT3G52180.4 44.571 175 95 2 95 268 1 174 2.68e-39 139
Msa0517490 AT3G01510.3 35.983 239 144 5 9 247 69 298 2.50e-32 124
Msa0517490 AT3G01510.2 35.983 239 144 5 9 247 69 298 2.50e-32 124
Msa0517490 AT3G01510.1 35.983 239 144 5 9 247 211 440 9.14e-32 124

Find 75 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTATCAATTACTCTATT+AGG 0.200564 3_4:+69177223 Msa0517490:CDS
TCAATACTACATGGAATATT+TGG 0.229020 3_4:-69180370 None:intergenic
GGAATATTTGGTACCGTTAC+AGG 0.236510 3_4:-69180358 None:intergenic
TGACAATTGCTTATTTGTTC+TGG 0.251643 3_4:+69179200 Msa0517490:CDS
TTCAACATTCAGAGCTTCTT+TGG 0.262998 3_4:+69177146 Msa0517490:CDS
ATCTAAATCTAATGATTTAA+TGG 0.263330 3_4:+69177311 Msa0517490:CDS
AGTCTTCCAGACCATGCTTT+TGG 0.273596 3_4:+69180027 Msa0517490:CDS
TCTAAGGATGACACTGCTTT+AGG 0.291760 3_4:-69179106 None:intergenic
TTAAGGTGATCTACATCTTC+AGG 0.294100 3_4:-69178444 None:intergenic
CTCAGAAATTGCCCATTCTA+AGG 0.297875 3_4:-69179122 None:intergenic
CCACACCTTCTTCCTTCTTA+AGG 0.313968 3_4:-69178461 None:intergenic
GATTGACAGGTCAGTGCTTA+TGG 0.313968 3_4:+69180225 Msa0517490:intron
AGGATAAGGATGCTGAGTTT+TGG 0.315172 3_4:+69178505 Msa0517490:CDS
ATCTTCAGGTTTCTGTGGTT+GGG 0.320424 3_4:-69178430 None:intergenic
AGTGCACTTCGCAAAGAGTT+TGG 0.350408 3_4:-69179082 None:intergenic
CATCTTCAGGTTTCTGTGGT+TGG 0.355320 3_4:-69178431 None:intergenic
ACAAGGAGCAACTTATGATT+TGG 0.358184 3_4:+69179972 Msa0517490:CDS
AGAACAGAATTTAGATTCAA+TGG 0.367500 3_4:-69180478 None:intergenic
CTTTGAAGTTAGCATATCAT+AGG 0.392022 3_4:-69179920 None:intergenic
ATATTCCATGTAGTATTGAT+TGG 0.399152 3_4:+69180374 Msa0517490:three_prime_UTR
TCTAAACTTGCAACAGGATA+AGG 0.402340 3_4:+69178491 Msa0517490:CDS
GCATATTTATATAGATATAT+AGG 0.402680 3_4:+69180328 Msa0517490:three_prime_UTR
AACCGTGTCCGCGCTCTTCG+TGG 0.426634 3_4:+69180084 Msa0517490:CDS
TTATGAGTATCATCACGATC+TGG 0.441184 3_4:+69177374 Msa0517490:CDS
AGATTTAGATACCCTCTTGC+TGG 0.449666 3_4:-69177298 None:intergenic
ATATATTCTAAACTTGCAAC+AGG 0.450710 3_4:+69178485 Msa0517490:CDS
AGATCGTGATGATACTCATA+AGG 0.451970 3_4:-69177372 None:intergenic
AAGCAGTGTCATCCTTAGAA+TGG 0.458306 3_4:+69179110 Msa0517490:CDS
CTCTCAAATGGCTCCTTCCA+TGG 0.458673 3_4:-69180006 None:intergenic
TTTGTTGTACACTATCAGAA+AGG 0.464043 3_4:+69177256 Msa0517490:CDS
AAATAAGCAATTGTCACTGC+TGG 0.476094 3_4:-69179193 None:intergenic
ATAACTGACAATTTGATTGT+GGG 0.477333 3_4:+69178405 Msa0517490:CDS
TTGTTGTACACTATCAGAAA+GGG 0.479495 3_4:+69177257 Msa0517490:CDS
ATATCCCCAAAAGCATGGTC+TGG 0.485767 3_4:-69180033 None:intergenic
TATAACTGACAATTTGATTG+TGG 0.487738 3_4:+69178404 Msa0517490:CDS
CAAATAATAAATCAACTTTG+TGG 0.488165 3_4:+69180397 Msa0517490:three_prime_UTR
AAATCTACATTCTACAATCA+TGG 0.497529 3_4:-69180428 None:intergenic
TTCGTGGAACCTGACGAATT+AGG 0.502926 3_4:+69180100 Msa0517490:exon
GTTTATGTGCACTGTACTGC+AGG 0.506912 3_4:+69179157 Msa0517490:CDS
GAATTTAGATTCAATGGAAG+AGG 0.507146 3_4:-69180472 None:intergenic
AGCAGTGTCATCCTTAGAAT+GGG 0.512745 3_4:+69179111 Msa0517490:CDS
GGGATATAGCAGATTGGGAG+AGG 0.512919 3_4:+69180049 Msa0517490:CDS
ATGGAAAGTGTAAGTAACAT+TGG 0.515333 3_4:+69177117 Msa0517490:CDS
GATCGTGATGATACTCATAA+GGG 0.517872 3_4:-69177371 None:intergenic
TGGGCAATTTCTGAGGGAAA+AGG 0.518950 3_4:+69179130 Msa0517490:CDS
TGGTCTGGAAGACTCTCAAA+TGG 0.522030 3_4:-69180018 None:intergenic
AGACTAATACCTAATTCGTC+AGG 0.528930 3_4:-69180109 None:intergenic
CTTAGAATGGGCAATTTCTG+AGG 0.532588 3_4:+69179123 Msa0517490:CDS
TCTACATCTTCAGGTTTCTG+TGG 0.534119 3_4:-69178435 None:intergenic
TATGAGTATCATCACGATCT+GGG 0.535409 3_4:+69177375 Msa0517490:CDS
GTGCACTGTACTGCAGGACT+TGG 0.536912 3_4:+69179163 Msa0517490:CDS
ATTCTACAATCATGGTACAT+AGG 0.555160 3_4:-69180420 None:intergenic
ATTTGCCAATCAATACTACA+TGG 0.557524 3_4:-69180379 None:intergenic
GATCACCTTAAGAAGGAAGA+AGG 0.559918 3_4:+69178456 Msa0517490:CDS
AAAAGAACAACAACTTGTGT+AGG 0.570717 3_4:-69180253 None:intergenic
CCAAATAAAAGAGCAATACA+AGG 0.573394 3_4:+69179955 Msa0517490:CDS
TTAGAATGGGCAATTTCTGA+GGG 0.579734 3_4:+69179124 Msa0517490:CDS
TAACTGACAATTTGATTGTG+GGG 0.583931 3_4:+69178406 Msa0517490:CDS
AGATGTAGATCACCTTAAGA+AGG 0.584321 3_4:+69178449 Msa0517490:CDS
TTCCACGAAGAGCGCGGACA+CGG 0.585377 3_4:-69180086 None:intergenic
TAGCTATGAAGAAGATGATG+AGG 0.589831 3_4:+69177346 Msa0517490:CDS
CTGCTATATCCCCAAAAGCA+TGG 0.592436 3_4:-69180038 None:intergenic
TTAGATACCCTCTTGCTGGT+AGG 0.594440 3_4:-69177294 None:intergenic
TCAAACAAGCAAAAGAACAA+TGG 0.598043 3_4:+69177098 Msa0517490:exon
CAAAAGTACTTTCAAAGCAG+AGG 0.607347 3_4:+69177172 Msa0517490:CDS
TATAGGTATATTGCCTGTAA+CGG 0.611860 3_4:+69180345 Msa0517490:three_prime_UTR
ATAGAAACCATAAAACTGCA+TGG 0.618576 3_4:-69177207 None:intergenic
CCTTAAGAAGGAAGAAGGTG+TGG 0.624960 3_4:+69178461 Msa0517490:CDS
AAGAGAATCCTACCAGCAAG+AGG 0.628874 3_4:+69177286 Msa0517490:CDS
GTTGTACACTATCAGAAAGG+GGG 0.629451 3_4:+69177259 Msa0517490:CDS
TGTTGTACACTATCAGAAAG+GGG 0.630282 3_4:+69177258 Msa0517490:CDS
GTCAGGTTCCACGAAGAGCG+CGG 0.664911 3_4:-69180092 None:intergenic
AGAGAATCCTACCAGCAAGA+GGG 0.665221 3_4:+69177287 Msa0517490:CDS
CTAACTTCAAAGAGACCTTG+TGG 0.666372 3_4:+69179931 Msa0517490:CDS
AACTTGAAATTAGACACATG+AGG 0.731891 3_4:+69178565 Msa0517490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAATGAAAAATAAT+TGG - chr3_4:69178310-69178329 None:intergenic 10.0%
!!! ATCACATTTTTTAAAAAATT+GGG - chr3_4:69178803-69178822 None:intergenic 10.0%
!!! TATCACATTTTTTAAAAAAT+TGG - chr3_4:69178804-69178823 None:intergenic 10.0%
!!! TTTTGTTTATTTACATTATT+AGG + chr3_4:69179045-69179064 Msa0517490:intron 10.0%
!!! CTATTTATTTTCATAAAAAA+AGG - chr3_4:69179747-69179766 None:intergenic 10.0%
!! ATCTAAATCTAATGATTTAA+TGG + chr3_4:69177311-69177330 Msa0517490:CDS 15.0%
!!! AGAAAAACATATTTTGAAAT+TGG + chr3_4:69177791-69177810 Msa0517490:intron 15.0%
!!! AAAAATAATTGGTTTTCTTA+GGG - chr3_4:69178299-69178318 None:intergenic 15.0%
!!! TCACATTTTTTAAAAAATTG+GGG - chr3_4:69178802-69178821 None:intergenic 15.0%
!!! AAATTTTTCACAAATGAATA+TGG + chr3_4:69179868-69179887 Msa0517490:intron 15.0%
!! GCATATTTATATAGATATAT+AGG + chr3_4:69180328-69180347 Msa0517490:three_prime_UTR 15.0%
!! TTTCTATCAATTACTCTATT+AGG + chr3_4:69177223-69177242 Msa0517490:CDS 20.0%
!! AATTGAATTTACATCGAAAT+TGG - chr3_4:69177435-69177454 None:intergenic 20.0%
!!! TATAGTTTTCGAGTTTATAA+AGG + chr3_4:69177764-69177783 Msa0517490:intron 20.0%
!!! GAAAAATAATTGGTTTTCTT+AGG - chr3_4:69178300-69178319 None:intergenic 20.0%
!! TATAATTCATACCTGAAATT+AGG - chr3_4:69178380-69178399 None:intergenic 20.0%
!! TAAATTAATGTACCAAAAAG+GGG - chr3_4:69178606-69178625 None:intergenic 20.0%
!! CTAAATTAATGTACCAAAAA+GGG - chr3_4:69178607-69178626 None:intergenic 20.0%
!! TCTAAATTAATGTACCAAAA+AGG - chr3_4:69178608-69178627 None:intergenic 20.0%
!! GAAATTATTATCATTTGAAG+TGG - chr3_4:69178773-69178792 None:intergenic 20.0%
!!! TTTTTAAAAAATTGGGGAAA+GGG - chr3_4:69178796-69178815 None:intergenic 20.0%
!!! TTTTTTAAAAAATTGGGGAA+AGG - chr3_4:69178797-69178816 None:intergenic 20.0%
!!! TTGACTGTTTTATATAACAA+AGG - chr3_4:69179597-69179616 None:intergenic 20.0%
!! CAAATAATAAATCAACTTTG+TGG + chr3_4:69180397-69180416 Msa0517490:three_prime_UTR 20.0%
! ATAGGAATGAATGAAATTGT+TGG + chr3_4:69177503-69177522 Msa0517490:intron 25.0%
!! ATAGAAGTATAGAACTACAA+AGG + chr3_4:69177562-69177581 Msa0517490:intron 25.0%
!!! TTTTTTTCCTTCATTGCATT+TGG + chr3_4:69177593-69177612 Msa0517490:intron 25.0%
!! TCTCCATTTCTTTTCAAAAT+TGG - chr3_4:69177734-69177753 None:intergenic 25.0%
! GTCTTTATACACTAAAATTG+TGG + chr3_4:69177827-69177846 Msa0517490:intron 25.0%
! AAACAAGATACTATTGGAAT+GGG - chr3_4:69177941-69177960 None:intergenic 25.0%
! TTATCCAAACAAGATACTAT+TGG - chr3_4:69177947-69177966 None:intergenic 25.0%
! GAAAGCAACTTATATGAAAA+TGG - chr3_4:69178062-69178081 None:intergenic 25.0%
!! ACTTTTACAATTCATGTGAA+TGG + chr3_4:69178273-69178292 Msa0517490:intron 25.0%
! TATAACTGACAATTTGATTG+TGG + chr3_4:69178404-69178423 Msa0517490:CDS 25.0%
! ATAACTGACAATTTGATTGT+GGG + chr3_4:69178405-69178424 Msa0517490:CDS 25.0%
! ATATATTCTAAACTTGCAAC+AGG + chr3_4:69178485-69178504 Msa0517490:CDS 25.0%
!!! TTTTAAAAAATTGGGGAAAG+GGG - chr3_4:69178795-69178814 None:intergenic 25.0%
! ATAGGTTGTATTAGGAAATA+GGG + chr3_4:69178855-69178874 Msa0517490:intron 25.0%
! TAATTCAATCAAGAACAAGT+CGG - chr3_4:69179016-69179035 None:intergenic 25.0%
!!! TGTTTTTTGATTCAAAGACA+AGG - chr3_4:69179259-69179278 None:intergenic 25.0%
! TAGAAAAGACACTATAAATC+AGG + chr3_4:69179383-69179402 Msa0517490:intron 25.0%
! AGAAAAGACACTATAAATCA+GGG + chr3_4:69179384-69179403 Msa0517490:intron 25.0%
! TCATATAAGCAAATCAAAAC+AGG - chr3_4:69179410-69179429 None:intergenic 25.0%
!!! TGTTTTGATTTGCTTATATG+AGG + chr3_4:69179409-69179428 Msa0517490:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr3_4:69179501-69179520 None:intergenic 25.0%
! TTAAGTTATATATCCCATAC+AGG + chr3_4:69179807-69179826 Msa0517490:intron 25.0%
! TAAGTTATATATCCCATACA+GGG + chr3_4:69179808-69179827 Msa0517490:intron 25.0%
! TTAGCTGTGCAAAAAATAAA+AGG - chr3_4:69179894-69179913 None:intergenic 25.0%
! TCAATACTACATGGAATATT+TGG - chr3_4:69180373-69180392 None:intergenic 25.0%
!!! ATATTCCATGTAGTATTGAT+TGG + chr3_4:69180374-69180393 Msa0517490:three_prime_UTR 25.0%
! AAATCTACATTCTACAATCA+TGG - chr3_4:69180431-69180450 None:intergenic 25.0%
! AGAACAGAATTTAGATTCAA+TGG - chr3_4:69180481-69180500 None:intergenic 25.0%
TCAAACAAGCAAAAGAACAA+TGG + chr3_4:69177098-69177117 Msa0517490:exon 30.0%
! ATGGAAAGTGTAAGTAACAT+TGG + chr3_4:69177117-69177136 Msa0517490:CDS 30.0%
ATAGAAACCATAAAACTGCA+TGG - chr3_4:69177210-69177229 None:intergenic 30.0%
! TTTGTTGTACACTATCAGAA+AGG + chr3_4:69177256-69177275 Msa0517490:CDS 30.0%
TTGTTGTACACTATCAGAAA+GGG + chr3_4:69177257-69177276 Msa0517490:CDS 30.0%
TCGAAATTGGCAAAACAAAT+AGG - chr3_4:69177422-69177441 None:intergenic 30.0%
TATGAATACTCTTGAGAGAT+AGG + chr3_4:69177485-69177504 Msa0517490:intron 30.0%
! TGTGCCTTTTAGATTTAAAC+CGG + chr3_4:69177652-69177671 Msa0517490:intron 30.0%
! CTTTTAGATTTAAACCGGAA+GGG + chr3_4:69177657-69177676 Msa0517490:intron 30.0%
!! GCTCCAATTTTGAAAAGAAA+TGG + chr3_4:69177728-69177747 Msa0517490:intron 30.0%
CAAACAAGATACTATTGGAA+TGG - chr3_4:69177942-69177961 None:intergenic 30.0%
CATTCCAATAGTATCTTGTT+TGG + chr3_4:69177940-69177959 Msa0517490:intron 30.0%
CTTCTATAAACTATCTCAGA+TGG - chr3_4:69178090-69178109 None:intergenic 30.0%
!!! TTGCATTTTAGGATCTGTTT+GGG - chr3_4:69178200-69178219 None:intergenic 30.0%
!!! TTTGCATTTTAGGATCTGTT+TGG - chr3_4:69178201-69178220 None:intergenic 30.0%
! CTGCATAAAGTTTGCATTTT+AGG - chr3_4:69178211-69178230 None:intergenic 30.0%
TAACTGACAATTTGATTGTG+GGG + chr3_4:69178406-69178425 Msa0517490:CDS 30.0%
AACTTGAAATTAGACACATG+AGG + chr3_4:69178565-69178584 Msa0517490:CDS 30.0%
ACTAAACATGTTTGTAGCAT+AGG + chr3_4:69178837-69178856 Msa0517490:intron 30.0%
TTTGTAGCATAGGTTGTATT+AGG + chr3_4:69178847-69178866 Msa0517490:intron 30.0%
CATAGGTTGTATTAGGAAAT+AGG + chr3_4:69178854-69178873 Msa0517490:intron 30.0%
CTTGAAGTGTGCATTTAAAT+TGG - chr3_4:69178900-69178919 None:intergenic 30.0%
CAATTTAAATGCACACTTCA+AGG + chr3_4:69178898-69178917 Msa0517490:intron 30.0%
CTTGAAACTATTTCAAGAGT+CGG - chr3_4:69178977-69178996 None:intergenic 30.0%
TGACAATTGCTTATTTGTTC+TGG + chr3_4:69179200-69179219 Msa0517490:CDS 30.0%
!! TTTTGATTCAAAGACAAGGT+GGG - chr3_4:69179255-69179274 None:intergenic 30.0%
!! TTTTTGATTCAAAGACAAGG+TGG - chr3_4:69179256-69179275 None:intergenic 30.0%
TAATCACTTGTGAGATTGTT+TGG + chr3_4:69179445-69179464 Msa0517490:intron 30.0%
AGATTGTTTGGAAGAGTTTA+TGG + chr3_4:69179457-69179476 Msa0517490:intron 30.0%
CAAATTTATAGTTCAAGTCC+TGG + chr3_4:69179614-69179633 Msa0517490:intron 30.0%
ACAACCTCTTGTAAAAAAAC+AGG + chr3_4:69179639-69179658 Msa0517490:intron 30.0%
CAACCTCTTGTAAAAAAACA+GGG + chr3_4:69179640-69179659 Msa0517490:intron 30.0%
!!! TTACCCTGTTTTTTTACAAG+AGG - chr3_4:69179646-69179665 None:intergenic 30.0%
TCTTGTAAAAAAACAGGGTA+AGG + chr3_4:69179645-69179664 Msa0517490:intron 30.0%
!! CTTTGAAGTTAGCATATCAT+AGG - chr3_4:69179923-69179942 None:intergenic 30.0%
! CCTTGTATTGCTCTTTTATT+TGG - chr3_4:69179958-69179977 None:intergenic 30.0%
CCAAATAAAAGAGCAATACA+AGG + chr3_4:69179955-69179974 Msa0517490:CDS 30.0%
ATTTGGCTAAAAATGATCCA+TGG + chr3_4:69179989-69180008 Msa0517490:CDS 30.0%
AAAAGAACAACAACTTGTGT+AGG - chr3_4:69180256-69180275 None:intergenic 30.0%
TATAGGTATATTGCCTGTAA+CGG + chr3_4:69180345-69180364 Msa0517490:three_prime_UTR 30.0%
ATTTGCCAATCAATACTACA+TGG - chr3_4:69180382-69180401 None:intergenic 30.0%
ATTCTACAATCATGGTACAT+AGG - chr3_4:69180423-69180442 None:intergenic 30.0%
GAATTTAGATTCAATGGAAG+AGG - chr3_4:69180475-69180494 None:intergenic 30.0%
TTCAACATTCAGAGCTTCTT+TGG + chr3_4:69177146-69177165 Msa0517490:CDS 35.0%
!! CAAAAGTACTTTCAAAGCAG+AGG + chr3_4:69177172-69177191 Msa0517490:CDS 35.0%
! AAAATCGCCATGCAGTTTTA+TGG + chr3_4:69177200-69177219 Msa0517490:CDS 35.0%
TGTTGTACACTATCAGAAAG+GGG + chr3_4:69177258-69177277 Msa0517490:CDS 35.0%
TAGCTATGAAGAAGATGATG+AGG + chr3_4:69177346-69177365 Msa0517490:CDS 35.0%
GATCGTGATGATACTCATAA+GGG - chr3_4:69177374-69177393 None:intergenic 35.0%
AGATCGTGATGATACTCATA+AGG - chr3_4:69177375-69177394 None:intergenic 35.0%
TTATGAGTATCATCACGATC+TGG + chr3_4:69177374-69177393 Msa0517490:CDS 35.0%
TATGAGTATCATCACGATCT+GGG + chr3_4:69177375-69177394 Msa0517490:CDS 35.0%
GCTACTGTTGCATTAGATTT+AGG + chr3_4:69177525-69177544 Msa0517490:intron 35.0%
ACTGTTGCATTAGATTTAGG+TGG + chr3_4:69177528-69177547 Msa0517490:intron 35.0%
ACACAAACCAAATGCAATGA+AGG - chr3_4:69177603-69177622 None:intergenic 35.0%
CCTTCCGGTTTAAATCTAAA+AGG - chr3_4:69177659-69177678 None:intergenic 35.0%
! CCTTTTAGATTTAAACCGGA+AGG + chr3_4:69177656-69177675 Msa0517490:intron 35.0%
TATCAGTGATGCCTAATTTC+AGG + chr3_4:69178366-69178385 Msa0517490:intron 35.0%
TTAAGGTGATCTACATCTTC+AGG - chr3_4:69178447-69178466 None:intergenic 35.0%
AGATGTAGATCACCTTAAGA+AGG + chr3_4:69178449-69178468 Msa0517490:CDS 35.0%
TCTAAACTTGCAACAGGATA+AGG + chr3_4:69178491-69178510 Msa0517490:CDS 35.0%
TGAAATGTTAGCTCAACAGT+AGG + chr3_4:69178674-69178693 Msa0517490:intron 35.0%
! ATCATTTGAAGTGGCACTAA+GGG - chr3_4:69178764-69178783 None:intergenic 35.0%
! TATCATTTGAAGTGGCACTA+AGG - chr3_4:69178765-69178784 None:intergenic 35.0%
TTAGAATGGGCAATTTCTGA+GGG + chr3_4:69179124-69179143 Msa0517490:CDS 35.0%
AAATAAGCAATTGTCACTGC+TGG - chr3_4:69179196-69179215 None:intergenic 35.0%
TTTGATTCAAAGACAAGGTG+GGG - chr3_4:69179254-69179273 None:intergenic 35.0%
TATTGTTGCACAAAACCTCT+TGG + chr3_4:69179316-69179335 Msa0517490:intron 35.0%
GAACTATCATTGAGAGCTTA+TGG - chr3_4:69179525-69179544 None:intergenic 35.0%
!! TTTTACAAGAGGTTGTTTCC+AGG - chr3_4:69179635-69179654 None:intergenic 35.0%
TTTGAATCCATGTCAGATTG+AGG - chr3_4:69179834-69179853 None:intergenic 35.0%
ACAAGGAGCAACTTATGATT+TGG + chr3_4:69179972-69179991 Msa0517490:CDS 35.0%
!! TTTTGGGGATATAGCAGATT+GGG + chr3_4:69180044-69180063 Msa0517490:CDS 35.0%
AGACTAATACCTAATTCGTC+AGG - chr3_4:69180112-69180131 None:intergenic 35.0%
ACACACAAAATCCAATATCC+TGG - chr3_4:69180151-69180170 None:intergenic 35.0%
ATGCTATACTTGTGATTGAC+AGG + chr3_4:69180212-69180231 Msa0517490:intron 35.0%
!! ACAAGTTGTTGTTCTTTTGC+AGG + chr3_4:69180258-69180277 Msa0517490:three_prime_UTR 35.0%
!! TTGTTGTTCTTTTGCAGGAT+TGG + chr3_4:69180263-69180282 Msa0517490:three_prime_UTR 35.0%
GTTGTACACTATCAGAAAGG+GGG + chr3_4:69177259-69177278 Msa0517490:CDS 40.0%
AGATTTAGATACCCTCTTGC+TGG - chr3_4:69177301-69177320 None:intergenic 40.0%
GATCTCTACTGAAACTCCTT+CGG - chr3_4:69177691-69177710 None:intergenic 40.0%
! GGAGCTTTTCAGAAATGAAG+AGG - chr3_4:69177713-69177732 None:intergenic 40.0%
TCTACCACTGAACATAACAG+GGG - chr3_4:69177902-69177921 None:intergenic 40.0%
CTCTACCACTGAACATAACA+GGG - chr3_4:69177903-69177922 None:intergenic 40.0%
TCTCTACCACTGAACATAAC+AGG - chr3_4:69177904-69177923 None:intergenic 40.0%
GATACTATTGGAATGGGAAG+TGG - chr3_4:69177935-69177954 None:intergenic 40.0%
CAGCTTATGACAAAAGCTGA+TGG + chr3_4:69178121-69178140 Msa0517490:intron 40.0%
! ATCTTCAGGTTTCTGTGGTT+GGG - chr3_4:69178433-69178452 None:intergenic 40.0%
! TCTACATCTTCAGGTTTCTG+TGG - chr3_4:69178438-69178457 None:intergenic 40.0%
GATCACCTTAAGAAGGAAGA+AGG + chr3_4:69178456-69178475 Msa0517490:CDS 40.0%
! AGGATAAGGATGCTGAGTTT+TGG + chr3_4:69178505-69178524 Msa0517490:CDS 40.0%
! GGATAAGGATGCTGAGTTTT+GGG + chr3_4:69178506-69178525 Msa0517490:CDS 40.0%
! GATAAGGATGCTGAGTTTTG+GGG + chr3_4:69178507-69178526 Msa0517490:CDS 40.0%
TCTCTGGCGTTGTAATTTCT+AGG + chr3_4:69178699-69178718 Msa0517490:intron 40.0%
CTCTGGCGTTGTAATTTCTA+GGG + chr3_4:69178700-69178719 Msa0517490:intron 40.0%
TAGGGACAGAATCCAAAACA+TGG + chr3_4:69178718-69178737 Msa0517490:intron 40.0%
TCTAAGGATGACACTGCTTT+AGG - chr3_4:69179109-69179128 None:intergenic 40.0%
AAGCAGTGTCATCCTTAGAA+TGG + chr3_4:69179110-69179129 Msa0517490:CDS 40.0%
AGCAGTGTCATCCTTAGAAT+GGG + chr3_4:69179111-69179130 Msa0517490:CDS 40.0%
CTCAGAAATTGCCCATTCTA+AGG - chr3_4:69179125-69179144 None:intergenic 40.0%
CTTAGAATGGGCAATTTCTG+AGG + chr3_4:69179123-69179142 Msa0517490:CDS 40.0%
TTGATTCAAAGACAAGGTGG+GGG - chr3_4:69179253-69179272 None:intergenic 40.0%
TTGCACAAAACCTCTTGGTT+TGG + chr3_4:69179321-69179340 Msa0517490:intron 40.0%
!! ACAAAACCTCTTGGTTTGGT+GGG + chr3_4:69179325-69179344 Msa0517490:intron 40.0%
TTTGGTGGGAACAACTAACA+AGG + chr3_4:69179339-69179358 Msa0517490:intron 40.0%
TTTCTACTCTTAGCAGCTCA+AGG - chr3_4:69179369-69179388 None:intergenic 40.0%
GCTACGTACAATACACCAAA+TGG + chr3_4:69179667-69179686 Msa0517490:intron 40.0%
ACGTACAATACACCAAATGG+TGG + chr3_4:69179670-69179689 Msa0517490:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr3_4:69179671-69179690 Msa0517490:intron 40.0%
CTAACTTCAAAGAGACCTTG+TGG + chr3_4:69179931-69179950 Msa0517490:CDS 40.0%
!! GCTCTTTTATTTGGTCCACA+AGG - chr3_4:69179949-69179968 None:intergenic 40.0%
GGCTAAAAATGATCCATGGA+AGG + chr3_4:69179993-69180012 Msa0517490:CDS 40.0%
!! CTTTTGGGGATATAGCAGAT+TGG + chr3_4:69180043-69180062 Msa0517490:CDS 40.0%
CTATTGTGAAAATCAGCTCC+AGG + chr3_4:69180130-69180149 Msa0517490:intron 40.0%
GAAAATCAGCTCCAGGATAT+TGG + chr3_4:69180137-69180156 Msa0517490:intron 40.0%
!!! CTCTCAAGTTTTGAGCACTA+TGG - chr3_4:69180298-69180317 None:intergenic 40.0%
GGAATATTTGGTACCGTTAC+AGG - chr3_4:69180361-69180380 None:intergenic 40.0%
AAGAGAATCCTACCAGCAAG+AGG + chr3_4:69177286-69177305 Msa0517490:CDS 45.0%
AGAGAATCCTACCAGCAAGA+GGG + chr3_4:69177287-69177306 Msa0517490:CDS 45.0%
TTAGATACCCTCTTGCTGGT+AGG - chr3_4:69177297-69177316 None:intergenic 45.0%
TTTAAACCGGAAGGGTGATG+TGG + chr3_4:69177665-69177684 Msa0517490:intron 45.0%
TCTACCCCTGTTATGTTCAG+TGG + chr3_4:69177895-69177914 Msa0517490:intron 45.0%
! CATCTTCAGGTTTCTGTGGT+TGG - chr3_4:69178434-69178453 None:intergenic 45.0%
CCACACCTTCTTCCTTCTTA+AGG - chr3_4:69178464-69178483 None:intergenic 45.0%
CCTTAAGAAGGAAGAAGGTG+TGG + chr3_4:69178461-69178480 Msa0517490:CDS 45.0%
! CCAAAAAGGGGTTTGCTTAC+AGG - chr3_4:69178594-69178613 None:intergenic 45.0%
! CCTGTAAGCAAACCCCTTTT+TGG + chr3_4:69178591-69178610 Msa0517490:intron 45.0%
ACAGAATCCAAAACATGGCG+AGG + chr3_4:69178723-69178742 Msa0517490:intron 45.0%
! TAATCGTCCTCGCCATGTTT+TGG - chr3_4:69178733-69178752 None:intergenic 45.0%
AGTGCACTTCGCAAAGAGTT+TGG - chr3_4:69179085-69179104 None:intergenic 45.0%
! TGGGCAATTTCTGAGGGAAA+AGG + chr3_4:69179130-69179149 Msa0517490:CDS 45.0%
GTTTATGTGCACTGTACTGC+AGG + chr3_4:69179157-69179176 Msa0517490:CDS 45.0%
!! CACAAAACCTCTTGGTTTGG+TGG + chr3_4:69179324-69179343 Msa0517490:intron 45.0%
TGGTCTGGAAGACTCTCAAA+TGG - chr3_4:69180021-69180040 None:intergenic 45.0%
! AGTCTTCCAGACCATGCTTT+TGG + chr3_4:69180027-69180046 Msa0517490:CDS 45.0%
! GTCTTCCAGACCATGCTTTT+GGG + chr3_4:69180028-69180047 Msa0517490:CDS 45.0%
! TCTTCCAGACCATGCTTTTG+GGG + chr3_4:69180029-69180048 Msa0517490:CDS 45.0%
! ATATCCCCAAAAGCATGGTC+TGG - chr3_4:69180036-69180055 None:intergenic 45.0%
CTGCTATATCCCCAAAAGCA+TGG - chr3_4:69180041-69180060 None:intergenic 45.0%
TTCGTGGAACCTGACGAATT+AGG + chr3_4:69180100-69180119 Msa0517490:exon 45.0%
GATTGACAGGTCAGTGCTTA+TGG + chr3_4:69180225-69180244 Msa0517490:intron 45.0%
!!! TATTTATTTTCATAAAAAAA+GGG - chr3_4:69179746-69179765 None:intergenic 5.0%
AGCTCAACAGTAGGAGTCTC+TGG + chr3_4:69178683-69178702 Msa0517490:intron 50.0%
GTTGTTCCCACCAAACCAAG+AGG - chr3_4:69179334-69179353 None:intergenic 50.0%
GTCAGATTGAGGCCCTGTAT+GGG - chr3_4:69179823-69179842 None:intergenic 50.0%
TGTCAGATTGAGGCCCTGTA+TGG - chr3_4:69179824-69179843 None:intergenic 50.0%
TACAGGGCCTCAATCTGACA+TGG + chr3_4:69179824-69179843 Msa0517490:intron 50.0%
CTCTCAAATGGCTCCTTCCA+TGG - chr3_4:69180009-69180028 None:intergenic 50.0%
GGGATATAGCAGATTGGGAG+AGG + chr3_4:69180049-69180068 Msa0517490:CDS 50.0%
GTGCACTGTACTGCAGGACT+TGG + chr3_4:69179163-69179182 Msa0517490:CDS 55.0%
TAGGAAGGGGTCCCACCATT+TGG - chr3_4:69179685-69179704 None:intergenic 55.0%
ATACGCAGGGGTCTAGGAAG+GGG - chr3_4:69179698-69179717 None:intergenic 55.0%
CATACGCAGGGGTCTAGGAA+GGG - chr3_4:69179699-69179718 None:intergenic 55.0%
TTCCTAGACCCCTGCGTATG+CGG + chr3_4:69179699-69179718 Msa0517490:intron 55.0%
TAAAGCTCCCGCATACGCAG+GGG - chr3_4:69179710-69179729 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr3_4:69179711-69179730 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr3_4:69179712-69179731 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG + chr3_4:69179716-69179735 Msa0517490:intron 55.0%
!!! CGCGGACACGGTTTTGAATC+AGG - chr3_4:69180077-69180096 None:intergenic 55.0%
CTTCGGCCACATCACCCTTC+CGG - chr3_4:69177674-69177693 None:intergenic 60.0%
GCATACGCAGGGGTCTAGGA+AGG - chr3_4:69179700-69179719 None:intergenic 60.0%
TCCTAGACCCCTGCGTATGC+GGG + chr3_4:69179700-69179719 Msa0517490:intron 60.0%
! TTCCACGAAGAGCGCGGACA+CGG - chr3_4:69180089-69180108 None:intergenic 60.0%
GTCAGGTTCCACGAAGAGCG+CGG - chr3_4:69180095-69180114 None:intergenic 60.0%
CGGAAGGGTGATGTGGCCGA+AGG + chr3_4:69177672-69177691 Msa0517490:intron 65.0%
TCCCGCATACGCAGGGGTCT+AGG - chr3_4:69179704-69179723 None:intergenic 65.0%
AACCGTGTCCGCGCTCTTCG+TGG + chr3_4:69180084-69180103 Msa0517490:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 69177083 69180548 69177083 ID=Msa0517490;Name=Msa0517490
chr3_4 mRNA 69177083 69180548 69177083 ID=Msa0517490-mRNA-1;Parent=Msa0517490;Name=Msa0517490-mRNA-1;_AED=0.13;_eAED=0.13;_QI=34|1|1|1|0.75|0.6|5|323|286
chr3_4 exon 69177083 69177396 69177083 ID=Msa0517490-mRNA-1:exon:18358;Parent=Msa0517490-mRNA-1
chr3_4 exon 69178388 69178593 69178388 ID=Msa0517490-mRNA-1:exon:18359;Parent=Msa0517490-mRNA-1
chr3_4 exon 69179067 69179237 69179067 ID=Msa0517490-mRNA-1:exon:18360;Parent=Msa0517490-mRNA-1
chr3_4 exon 69179910 69180121 69179910 ID=Msa0517490-mRNA-1:exon:18361;Parent=Msa0517490-mRNA-1
chr3_4 exon 69180234 69180548 69180234 ID=Msa0517490-mRNA-1:exon:18362;Parent=Msa0517490-mRNA-1
chr3_4 five_prime_UTR 69177083 69177116 69177083 ID=Msa0517490-mRNA-1:five_prime_utr;Parent=Msa0517490-mRNA-1
chr3_4 CDS 69177117 69177396 69177117 ID=Msa0517490-mRNA-1:cds;Parent=Msa0517490-mRNA-1
chr3_4 CDS 69178388 69178593 69178388 ID=Msa0517490-mRNA-1:cds;Parent=Msa0517490-mRNA-1
chr3_4 CDS 69179067 69179237 69179067 ID=Msa0517490-mRNA-1:cds;Parent=Msa0517490-mRNA-1
chr3_4 CDS 69179910 69180113 69179910 ID=Msa0517490-mRNA-1:cds;Parent=Msa0517490-mRNA-1
chr3_4 three_prime_UTR 69180114 69180121 69180114 ID=Msa0517490-mRNA-1:three_prime_utr;Parent=Msa0517490-mRNA-1
chr3_4 three_prime_UTR 69180234 69180548 69180234 ID=Msa0517490-mRNA-1:three_prime_utr;Parent=Msa0517490-mRNA-1
Gene Sequence

>Msa0517490

ATGGAAAGTGTAAGTAACATTGGTTTCTCTTCAACATTCAGAGCTTCTTTGGACACAAAAGTACTTTCAAAGCAGAGGAAACAAAAATCGCCATGCAGTTTTATGGTTTCTATCAATTACTCTATTAGGATGAACAAAATTTGTTGTACACTATCAGAAAGGGGGATTGAAGAGAATCCTACCAGCAAGAGGGTATCTAAATCTAATGATTTAATGGAAGAATACAATATAGCTATGAAGAAGATGATGAGGAACCCTTATGAGTATCATCACGATCTGGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCCCAACCACAGAAACCTGAAGATGTAGATCACCTTAAGAAGGAAGAAGGTGTGGCATATATTCTAAACTTGCAACAGGATAAGGATGCTGAGTTTTGGGGAATAGACTTGCAGTCAATAGTAAAAAAGTGTCGCGAACTTGAAATTAGACACATGAGGAGACCTGCAGTAGACTTTGATCCAAACTCTTTGCGAAGTGCACTACCTAAAGCAGTGTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCACTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTGACAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCCTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACAAGGAGCAACTTATGATTTGGCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGATTGGGAGAGGAACCTGATTCAAAACCGTGTCCGCGCTCTTCGTGGAACCTGA

Protein sequence

>Msa0517490

MESVSNIGFSSTFRASLDTKVLSKQRKQKSPCSFMVSINYSIRMNKICCTLSERGIEENPTSKRVSKSNDLMEEYNIAMKKMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDVDHLKKEEGVAYILNLQQDKDAEFWGIDLQSIVKKCRELEIRHMRRPAVDFDPNSLRSALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVTIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIQGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT*