Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724550 | PNX79928.1 | 66.176 | 68 | 23 | 0 | 47 | 114 | 6 | 73 | 1.34e-22 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724550 | sp|Q0IV63|DRB7_ORYSJ | 47.872 | 94 | 38 | 1 | 21 | 114 | 13 | 95 | 1.14e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724550 | A0A2K3LN19 | 66.176 | 68 | 23 | 0 | 47 | 114 | 6 | 73 | 6.40e-23 | 94.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015100 | Msa0724550 | 0.808700 | 2.722883e-50 | -8.615850e-47 |
| Msa0049770 | Msa0724550 | 0.804021 | 2.638740e-49 | -8.615850e-47 |
| Msa0051200 | Msa0724550 | 0.814309 | 1.645274e-51 | -8.615850e-47 |
| Msa0051460 | Msa0724550 | 0.823546 | 1.306607e-53 | -8.615850e-47 |
| Msa0077390 | Msa0724550 | 0.802415 | 5.672270e-49 | -8.615850e-47 |
| Msa0088550 | Msa0724550 | 0.819153 | 1.348482e-52 | -8.615850e-47 |
| Msa0101840 | Msa0724550 | 0.805047 | 1.611751e-49 | -8.615850e-47 |
| Msa0640380 | Msa0724550 | 0.822653 | 2.111071e-53 | -8.615850e-47 |
| Msa0641020 | Msa0724550 | 0.834330 | 3.191152e-56 | -8.615850e-47 |
| Msa0678820 | Msa0724550 | 0.830844 | 2.336077e-55 | -8.615850e-47 |
| Msa0718240 | Msa0724550 | 0.839666 | 1.382390e-57 | -8.615850e-47 |
| Msa0722930 | Msa0724550 | 0.806093 | 9.723105e-50 | -8.615850e-47 |
| Msa0724550 | Msa0733400 | 0.814103 | 1.827217e-51 | -8.615850e-47 |
| Msa0724550 | Msa0765130 | 0.983919 | 4.456430e-159 | -8.615850e-47 |
| Msa0724550 | Msa0811940 | 0.814740 | 1.320900e-51 | -8.615850e-47 |
| Msa0724550 | Msa0839230 | 0.819106 | 1.382568e-52 | -8.615850e-47 |
| Msa0724550 | Msa0883660 | 0.813569 | 2.395570e-51 | -8.615850e-47 |
| Msa0724550 | Msa0916170 | 0.814567 | 1.442879e-51 | -8.615850e-47 |
| Msa0724550 | Msa0916590 | 0.810343 | 1.208359e-50 | -8.615850e-47 |
| Msa0724550 | Msa1037710 | 0.835025 | 2.132643e-56 | -8.615850e-47 |
| Msa0724550 | Msa1054410 | 0.824506 | 7.778940e-54 | -8.615850e-47 |
| Msa0724550 | Msa1105270 | 0.800083 | 1.702118e-48 | -8.615850e-47 |
| Msa0724550 | Msa1130350 | 0.808777 | 2.622124e-50 | -8.615850e-47 |
| Msa0724550 | Msa1139240 | 0.807960 | 3.914938e-50 | -8.615850e-47 |
| Msa0724550 | Msa1208340 | 0.805457 | 1.322935e-49 | -8.615850e-47 |
| Msa0724550 | Msa1279850 | 0.803501 | 3.381952e-49 | -8.615850e-47 |
| Msa0724550 | Msa1279860 | 0.811967 | 5.372153e-51 | -8.615850e-47 |
| Msa0724550 | Msa1279870 | 0.801395 | 9.188048e-49 | -8.615850e-47 |
| Msa0724550 | Msa1375800 | 0.800842 | 1.191948e-48 | -8.615850e-47 |
| Msa0724550 | Msa1377070 | 0.818133 | 2.297434e-52 | -8.615850e-47 |
| Msa0724550 | Msa1413840 | 0.807787 | 4.261395e-50 | -8.615850e-47 |
| Msa0724550 | Msa1438820 | 0.816128 | 6.488014e-52 | -8.615850e-47 |
| Msa0724550 | Msa1441200 | 0.807873 | 4.085339e-50 | -8.615850e-47 |
| Msa0724550 | Msa1445250 | 0.816787 | 4.618716e-52 | -8.615850e-47 |
| Msa0724550 | Msa1457020 | 0.801730 | 7.843064e-49 | -8.615850e-47 |
| Msa0724550 | Msa1458550 | 0.807276 | 5.469994e-50 | -8.615850e-47 |
| Msa0135360 | Msa0724550 | 0.816951 | 4.243847e-52 | -8.615850e-47 |
| Msa0143920 | Msa0724550 | 0.826029 | 3.394873e-54 | -8.615850e-47 |
| Msa0153440 | Msa0724550 | 0.805550 | 1.264762e-49 | -8.615850e-47 |
| Msa0179860 | Msa0724550 | 0.821713 | 3.488810e-53 | -8.615850e-47 |
| Msa0190640 | Msa0724550 | 0.804873 | 1.752948e-49 | -8.615850e-47 |
| Msa0366470 | Msa0724550 | 0.812922 | 3.321838e-51 | -8.615850e-47 |
| Msa0381180 | Msa0724550 | 0.814437 | 1.541587e-51 | -8.615850e-47 |
| Msa0389360 | Msa0724550 | 0.825517 | 4.491024e-54 | -8.615850e-47 |
| Msa0438050 | Msa0724550 | 0.831541 | 1.574828e-55 | -8.615850e-47 |
| Msa0465680 | Msa0724550 | -0.805934 | 1.050263e-49 | -8.615850e-47 |
| Msa0342340 | Msa0724550 | -0.802873 | 4.562740e-49 | -8.615850e-47 |
| Msa0528970 | Msa0724550 | 0.811818 | 5.788094e-51 | -8.615850e-47 |
| Msa0543900 | Msa0724550 | 0.819222 | 1.300865e-52 | -8.615850e-47 |
| Msa0599770 | Msa0724550 | 0.814020 | 1.905174e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724550 | MtrunA17_Chr3g0132821 | 64.706 | 68 | 24 | 0 | 47 | 114 | 11 | 78 | 5.33e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724550 | AT1G09700.2 | 57.353 | 68 | 29 | 0 | 47 | 114 | 10 | 77 | 2.40e-19 | 80.9 |
| Msa0724550 | AT1G09700.1 | 57.353 | 68 | 29 | 0 | 47 | 114 | 10 | 77 | 6.75e-19 | 80.9 |
Find 23 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCTGAAAGAAAGTTTA+TGG | 0.183803 | 5_1:-23163909 | None:intergenic |
| CTCTCCATAAACTTTCTTTC+AGG | 0.227895 | 5_1:+23163905 | Msa0724550:CDS |
| CTTCCAGCACTGCTCTCAAA+TGG | 0.438969 | 5_1:+23161027 | Msa0724550:CDS |
| ATTCCATTTGAGAGCAGTGC+TGG | 0.445915 | 5_1:-23161030 | None:intergenic |
| TGTTATCAACGTCGTTCTGC+CGG | 0.463799 | 5_1:+23160990 | Msa0724550:CDS |
| CACTGCTCTCAAATGGAATA+CGG | 0.478562 | 5_1:+23161034 | Msa0724550:CDS |
| CAGAATTTCGTTGGCAACGG+CGG | 0.478941 | 5_1:+23161062 | Msa0724550:CDS |
| TCTGTGCATACTCTTGCAAT+CGG | 0.492017 | 5_1:-23163837 | None:intergenic |
| CAAAACAACATGGTCGGTCC+TGG | 0.496611 | 5_1:+23160964 | Msa0724550:CDS |
| GCGCAGAATTTCGTTGGCAA+CGG | 0.546109 | 5_1:+23161059 | Msa0724550:CDS |
| ACGGCAGCGCAGAATTTCGT+TGG | 0.551421 | 5_1:+23161053 | Msa0724550:CDS |
| GTGTATACAACTACTAGTGA+AGG | 0.573758 | 5_1:+23163880 | Msa0724550:CDS |
| GGAAGGTCGGAAGTGCATGC+CGG | 0.574445 | 5_1:-23161009 | None:intergenic |
| GCAATCGGTTCTTGAACATG+TGG | 0.602573 | 5_1:-23163822 | None:intergenic |
| CATTTGAGAGCAGTGCTGGA+AGG | 0.609699 | 5_1:-23161026 | None:intergenic |
| TGAGAGCAGTGCTGGAAGGT+CGG | 0.611562 | 5_1:-23161022 | None:intergenic |
| ACGACGTTGATAACAACACC+AGG | 0.631409 | 5_1:-23160982 | None:intergenic |
| TGTATACAACTACTAGTGAA+GGG | 0.642795 | 5_1:+23163881 | Msa0724550:CDS |
| TTAGATCAAAACAACATGGT+CGG | 0.653159 | 5_1:+23160958 | Msa0724550:CDS |
| CTGAAAGAAAGTTTATGGAG+AGG | 0.658722 | 5_1:-23163904 | None:intergenic |
| TCACTAGTAGTTGTATACAC+AGG | 0.686986 | 5_1:-23163877 | None:intergenic |
| GTTCTTAGATCAAAACAACA+TGG | 0.688664 | 5_1:+23160954 | Msa0724550:CDS |
| AGTAGTTGTATACACAGGTG+CGG | 0.711484 | 5_1:-23163872 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+GGG | - | chr5_1:23161321-23161340 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr5_1:23161322-23161341 | None:intergenic | 0.0% |
| !! | ACATATATATATATATATAG+AGG | + | chr5_1:23161466-23161485 | Msa0724550:intron | 10.0% |
| !! | AAATTAAAAAATGGATATAT+AGG | - | chr5_1:23161789-23161808 | None:intergenic | 10.0% |
| !! | ATAGCAATTAAATTAAAAAA+TGG | - | chr5_1:23161798-23161817 | None:intergenic | 10.0% |
| !!! | TTTTAATTTAATTGCTATTA+AGG | + | chr5_1:23161800-23161819 | Msa0724550:intron | 10.0% |
| !!! | TAGAATTAATTTTGAAATTT+GGG | - | chr5_1:23162078-23162097 | None:intergenic | 10.0% |
| !! | ATCTTTAAATAAAAAATGAA+CGG | - | chr5_1:23162527-23162546 | None:intergenic | 10.0% |
| !! | CTATATATATATATATATAG+AGG | - | chr5_1:23162603-23162622 | None:intergenic | 10.0% |
| !! | CTCTATATATATATATATAT+AGG | + | chr5_1:23162601-23162620 | Msa0724550:intron | 10.0% |
| !! | CATTAATTAATTTATGTATT+TGG | + | chr5_1:23163360-23163379 | Msa0724550:intron | 10.0% |
| !! | TTATTAGAAATAATGTAGTA+GGG | - | chr5_1:23161609-23161628 | None:intergenic | 15.0% |
| !! | TTTATTAGAAATAATGTAGT+AGG | - | chr5_1:23161610-23161629 | None:intergenic | 15.0% |
| !!! | AGATTCAATTATTTTATTGT+GGG | - | chr5_1:23161661-23161680 | None:intergenic | 15.0% |
| !!! | TAGATTCAATTATTTTATTG+TGG | - | chr5_1:23161662-23161681 | None:intergenic | 15.0% |
| !! | ATATGATAAAAATTGAAACT+TGG | + | chr5_1:23161850-23161869 | Msa0724550:intron | 15.0% |
| !!! | TTTTTTTTCTTTTTTCATCA+TGG | - | chr5_1:23162054-23162073 | None:intergenic | 15.0% |
| !!! | GTAGAATTAATTTTGAAATT+TGG | - | chr5_1:23162079-23162098 | None:intergenic | 15.0% |
| !! | TAAAATACTTCTTAATTCAA+GGG | - | chr5_1:23162890-23162909 | None:intergenic | 15.0% |
| !! | TTAAAATACTTCTTAATTCA+AGG | - | chr5_1:23162891-23162910 | None:intergenic | 15.0% |
| !!! | GAATTAAGAAGTATTTTAAA+AGG | + | chr5_1:23162892-23162911 | Msa0724550:intron | 15.0% |
| !! | CGATTATATATTATATATAG+TGG | - | chr5_1:23163003-23163022 | None:intergenic | 15.0% |
| !!! | ATATAATCGATTTGAAAATT+TGG | + | chr5_1:23163014-23163033 | Msa0724550:intron | 15.0% |
| !!! | TATAATCGATTTGAAAATTT+GGG | + | chr5_1:23163015-23163034 | Msa0724550:intron | 15.0% |
| !! | TAAAATACTTCTTAATTCAA+GGG | - | chr5_1:23162890-23162909 | None:intergenic | 15.0% |
| !! | TTAAAATACTTCTTAATTCA+AGG | - | chr5_1:23162891-23162910 | None:intergenic | 15.0% |
| !!! | GAATTAAGAAGTATTTTAAA+AGG | + | chr5_1:23162892-23162911 | Msa0724550:intron | 15.0% |
| !!! | TTAATTTATGTATTTGGTTT+AGG | + | chr5_1:23163366-23163385 | Msa0724550:intron | 15.0% |
| !!! | TATAATCGATTTGAAAATTT+GGG | + | chr5_1:23163015-23163034 | Msa0724550:intron | 15.0% |
| !! | GACAATAAAAATAGAGAAAA+AGG | + | chr5_1:23161216-23161235 | Msa0724550:intron | 20.0% |
| !!! | ATTTTTTGTCAAAAGTAGAT+AGG | + | chr5_1:23161241-23161260 | Msa0724550:intron | 20.0% |
| !! | GAAGATGAAAAGATAAAAAT+GGG | - | chr5_1:23161633-23161652 | None:intergenic | 20.0% |
| !! | TTATTTGATAAGCTGTAAAT+TGG | + | chr5_1:23161748-23161767 | Msa0724550:intron | 20.0% |
| !!! | ATTTTTATCATATAGAGTGA+TGG | - | chr5_1:23161843-23161862 | None:intergenic | 20.0% |
| !!! | AATGGTTTCATTTTTTTTAC+AGG | - | chr5_1:23161917-23161936 | None:intergenic | 20.0% |
| !!! | GTTTGAATGTAATGTTTTAA+TGG | - | chr5_1:23161935-23161954 | None:intergenic | 20.0% |
| !! | ATAAAAGACACATTCATAAA+AGG | + | chr5_1:23162770-23162789 | Msa0724550:intron | 20.0% |
| !! | AAAATACTTCTTAATTCAAG+GGG | - | chr5_1:23162889-23162908 | None:intergenic | 20.0% |
| !!! | AGTATTTTAAAAGGAACATT+TGG | + | chr5_1:23162901-23162920 | Msa0724550:intron | 20.0% |
| !!! | GTATTTTAAAAGGAACATTT+GGG | + | chr5_1:23162902-23162921 | Msa0724550:intron | 20.0% |
| !! | TTAGAATATATGCATTAGTA+CGG | - | chr5_1:23162954-23162973 | None:intergenic | 20.0% |
| !! | AAAATACTTCTTAATTCAAG+GGG | - | chr5_1:23162889-23162908 | None:intergenic | 20.0% |
| !!! | AGTATTTTAAAAGGAACATT+TGG | + | chr5_1:23162901-23162920 | Msa0724550:intron | 20.0% |
| !!! | GTATTTTAAAAGGAACATTT+GGG | + | chr5_1:23162902-23162921 | Msa0724550:intron | 20.0% |
| !! | TTAGAATATATGCATTAGTA+AGG | - | chr5_1:23162954-23162973 | None:intergenic | 20.0% |
| !!! | GTATAATCGATTTGAAAATT+TGG | + | chr5_1:23163462-23163481 | Msa0724550:intron | 20.0% |
| !! | ATAAATGAATCAAATTGTGA+GGG | - | chr5_1:23163736-23163755 | None:intergenic | 20.0% |
| !! | AATAAATGAATCAAATTGTG+AGG | - | chr5_1:23163737-23163756 | None:intergenic | 20.0% |
| !! | GTGGTTTGAAATTACTTAAA+AGG | + | chr5_1:23161180-23161199 | Msa0724550:intron | 25.0% |
| !! | ACCATCAGATCTAAAATAAA+TGG | + | chr5_1:23161542-23161561 | Msa0724550:intron | 25.0% |
| !!! | ACCATTTATTTTAGATCTGA+TGG | - | chr5_1:23161546-23161565 | None:intergenic | 25.0% |
| ! | AGATACATGTGTTTCTTAAA+TGG | - | chr5_1:23161584-23161603 | None:intergenic | 25.0% |
| ! | GGAAGATGAAAAGATAAAAA+TGG | - | chr5_1:23161634-23161653 | None:intergenic | 25.0% |
| !!! | AATTATTTTATTGTGGGTTG+AGG | - | chr5_1:23161655-23161674 | None:intergenic | 25.0% |
| ! | CTAAATCAATTTATGAGCAA+TGG | - | chr5_1:23161978-23161997 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTTTCATCATGG+AGG | - | chr5_1:23162051-23162070 | None:intergenic | 25.0% |
| ! | CAAAATTAATTCTACACTTG+TGG | + | chr5_1:23162084-23162103 | Msa0724550:intron | 25.0% |
| ! | GCAAAATCAATTGAAAGAAA+TGG | + | chr5_1:23162410-23162429 | Msa0724550:intron | 25.0% |
| ! | AAATCAATTGAAAGAAATGG+TGG | + | chr5_1:23162413-23162432 | Msa0724550:intron | 25.0% |
| !! | GTTTTTGTTCCAAAACAAAA+AGG | + | chr5_1:23163223-23163242 | Msa0724550:intron | 25.0% |
| !! | AGGGAGTATATTATATATAG+TGG | - | chr5_1:23163302-23163321 | None:intergenic | 25.0% |
| ! | TATATATAATATACTCCCTC+CGG | + | chr5_1:23163303-23163322 | Msa0724550:intron | 25.0% |
| ! | ATCAACTTTCTCTTGTAAAT+AGG | + | chr5_1:23163429-23163448 | Msa0724550:intron | 25.0% |
| !! | TTAATATTTTACCCCTTTCT+TGG | + | chr5_1:23163657-23163676 | Msa0724550:intron | 25.0% |
| !! | TAATATTTTACCCCTTTCTT+GGG | + | chr5_1:23163658-23163677 | Msa0724550:intron | 25.0% |
| GTTCTTAGATCAAAACAACA+TGG | + | chr5_1:23160954-23160973 | Msa0724550:CDS | 30.0% | |
| TTAGATCAAAACAACATGGT+CGG | + | chr5_1:23160958-23160977 | Msa0724550:CDS | 30.0% | |
| ATGCCTTCTTTATATGAGAA+TGG | + | chr5_1:23161504-23161523 | Msa0724550:intron | 30.0% | |
| TCACCATTCTCATATAAAGA+AGG | - | chr5_1:23161510-23161529 | None:intergenic | 30.0% | |
| ! | GCCTTTATTTATGAAGAACA+CGG | - | chr5_1:23162001-23162020 | None:intergenic | 30.0% |
| AACAACTTCTATCTGTGTTT+GGG | - | chr5_1:23162207-23162226 | None:intergenic | 30.0% | |
| AAACAACTTCTATCTGTGTT+TGG | - | chr5_1:23162208-23162227 | None:intergenic | 30.0% | |
| AAGGAATGATGAGATGAATA+TGG | + | chr5_1:23162454-23162473 | Msa0724550:intron | 30.0% | |
| AGGAATGATGAGATGAATAT+GGG | + | chr5_1:23162455-23162474 | Msa0724550:intron | 30.0% | |
| ! | TTTTGTTACAAGCCACAATT+TGG | + | chr5_1:23162625-23162644 | Msa0724550:intron | 30.0% |
| ! | TTTTAACAAGTCACACCTTA+AGG | + | chr5_1:23162655-23162674 | Msa0724550:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | - | chr5_1:23162673-23162692 | None:intergenic | 30.0% | |
| ! | AAAAGGAACATTTGGGTTTA+TGG | + | chr5_1:23162909-23162928 | Msa0724550:intron | 30.0% |
| GTTTATGGTCCAAAACAAAA+AGG | + | chr5_1:23162924-23162943 | Msa0724550:intron | 30.0% | |
| !!! | TTGGGAAGCATTTTAAGATA+AGG | + | chr5_1:23163033-23163052 | Msa0724550:intron | 30.0% |
| !! | TAAGGTACACCTTTTTGTTT+TGG | - | chr5_1:23163235-23163254 | None:intergenic | 30.0% |
| TTGTCTCATGTAAATAGAAC+CGG | - | chr5_1:23163325-23163344 | None:intergenic | 30.0% | |
| !!! | TTGGGAAGCATTTTAAGATA+AGG | + | chr5_1:23163033-23163052 | Msa0724550:intron | 30.0% |
| ACACAAAAATCAACTTTCCA+AGG | + | chr5_1:23163573-23163592 | Msa0724550:intron | 30.0% | |
| CACAAAAATCAACTTTCCAA+GGG | + | chr5_1:23163574-23163593 | Msa0724550:intron | 30.0% | |
| TGTATACAACTACTAGTGAA+GGG | + | chr5_1:23163881-23163900 | Msa0724550:CDS | 30.0% | |
| TTGACCTGAAAGAAAGTTTA+TGG | - | chr5_1:23163912-23163931 | None:intergenic | 30.0% | |
| !! | GACTGAATTTTCTAAGAAGA+AGG | + | chr5_1:23163966-23163985 | Msa0724550:CDS | 30.0% |
| AGAGAGAGAAACTCTTAATG+TGG | + | chr5_1:23161161-23161180 | Msa0724550:intron | 35.0% | |
| TGTCAAAAGTAGATAGGTGT+AGG | + | chr5_1:23161247-23161266 | Msa0724550:intron | 35.0% | |
| !! | ACACCTTCTAGAATTGAAGT+GGG | + | chr5_1:23161280-23161299 | Msa0724550:intron | 35.0% |
| TTATCATATAGAGTGATGGC+TGG | - | chr5_1:23161839-23161858 | None:intergenic | 35.0% | |
| TATGAGCAATGGTGAGAATT+TGG | - | chr5_1:23161967-23161986 | None:intergenic | 35.0% | |
| GCCGTGTTCTTCATAAATAA+AGG | + | chr5_1:23161997-23162016 | Msa0724550:intron | 35.0% | |
| ATTGAAAGAAAACACCAGTG+CGG | - | chr5_1:23162023-23162042 | None:intergenic | 35.0% | |
| ! | CACTGGTGTTTTCTTTCAAT+TGG | + | chr5_1:23162023-23162042 | Msa0724550:intron | 35.0% |
| GATTTGTAACGTATACAACG+AGG | + | chr5_1:23162255-23162274 | Msa0724550:intron | 35.0% | |
| GCTCTATAGATCAATAGGAA+GGG | + | chr5_1:23162340-23162359 | Msa0724550:intron | 35.0% | |
| CTCTATAGATCAATAGGAAG+GGG | + | chr5_1:23162341-23162360 | Msa0724550:intron | 35.0% | |
| AAGAACAACATGATCAACCA+TGG | + | chr5_1:23162366-23162385 | Msa0724550:intron | 35.0% | |
| !! | TTGAAAGAAATGGTGGATGA+AGG | + | chr5_1:23162420-23162439 | Msa0724550:intron | 35.0% |
| AGATGAATATGGGTGAGAAT+TGG | + | chr5_1:23162465-23162484 | Msa0724550:intron | 35.0% | |
| GATGAATATGGGTGAGAATT+GGG | + | chr5_1:23162466-23162485 | Msa0724550:intron | 35.0% | |
| TAAAAGACACCACCAAATTG+TGG | - | chr5_1:23162640-23162659 | None:intergenic | 35.0% | |
| ACACCTTCATGAAAGTAAGT+TGG | + | chr5_1:23162715-23162734 | Msa0724550:intron | 35.0% | |
| ACACCAACTTACTTTCATGA+AGG | - | chr5_1:23162721-23162740 | None:intergenic | 35.0% | |
| ATATATGTGTGTGTGTGTGT+GGG | - | chr5_1:23161394-23161413 | None:intergenic | 35.0% | |
| TATATATGTGTGTGTGTGTG+TGG | - | chr5_1:23161395-23161414 | None:intergenic | 35.0% | |
| !! | TACGGTACACCTTTTTGTTT+TGG | - | chr5_1:23162936-23162955 | None:intergenic | 35.0% |
| !!! | GCATTTTAAGATAAGGCTGA+AGG | + | chr5_1:23163040-23163059 | Msa0724550:intron | 35.0% |
| CTTTCTCTTGTAAATAGGAC+CGG | + | chr5_1:23163434-23163453 | Msa0724550:intron | 35.0% | |
| !!! | GCATTTTAAGATAAGGCTGA+AGG | + | chr5_1:23163040-23163059 | Msa0724550:intron | 35.0% |
| CTTCTAATGACGAATGTTAG+TGG | + | chr5_1:23163621-23163640 | Msa0724550:intron | 35.0% | |
| ATGAATCAAATTGTGAGGGT+TGG | - | chr5_1:23163732-23163751 | None:intergenic | 35.0% | |
| TCACTAGTAGTTGTATACAC+AGG | - | chr5_1:23163880-23163899 | None:intergenic | 35.0% | |
| GTGTATACAACTACTAGTGA+AGG | + | chr5_1:23163880-23163899 | Msa0724550:CDS | 35.0% | |
| CTGAAAGAAAGTTTATGGAG+AGG | - | chr5_1:23163907-23163926 | None:intergenic | 35.0% | |
| CTCTCCATAAACTTTCTTTC+AGG | + | chr5_1:23163905-23163924 | Msa0724550:CDS | 35.0% | |
| CACTGCTCTCAAATGGAATA+CGG | + | chr5_1:23161034-23161053 | Msa0724550:CDS | 40.0% | |
| ATTGTAGTAACGCACAACAC+AGG | - | chr5_1:23161109-23161128 | None:intergenic | 40.0% | |
| TGTGTTGTGCGTTACTACAA+TGG | + | chr5_1:23161108-23161127 | Msa0724550:intron | 40.0% | |
| !! | CACACCTTCTAGAATTGAAG+TGG | + | chr5_1:23161279-23161298 | Msa0724550:intron | 40.0% |
| ACACCCACTTCAATTCTAGA+AGG | - | chr5_1:23161286-23161305 | None:intergenic | 40.0% | |
| TTCATAAATAAAGGCCGCAC+TGG | + | chr5_1:23162006-23162025 | Msa0724550:intron | 40.0% | |
| ! | TGTGTTTGGGATGTGAATTG+GGG | - | chr5_1:23162194-23162213 | None:intergenic | 40.0% |
| ! | CTGTGTTTGGGATGTGAATT+GGG | - | chr5_1:23162195-23162214 | None:intergenic | 40.0% |
| ! | TCTGTGTTTGGGATGTGAAT+TGG | - | chr5_1:23162196-23162215 | None:intergenic | 40.0% |
| TCTGATGAGATGTTACGTGT+CGG | + | chr5_1:23162302-23162321 | Msa0724550:intron | 40.0% | |
| TCTGGGCTCTATAGATCAAT+AGG | + | chr5_1:23162335-23162354 | Msa0724550:intron | 40.0% | |
| GGCTCTATAGATCAATAGGA+AGG | + | chr5_1:23162339-23162358 | Msa0724550:intron | 40.0% | |
| GATGAAGGTTGCTACATCAA+AGG | + | chr5_1:23162435-23162454 | Msa0724550:intron | 40.0% | |
| TGTTACAAGCCACAATTTGG+TGG | + | chr5_1:23162628-23162647 | Msa0724550:intron | 40.0% | |
| CTTAATTCAAGGGGCAGTAA+CGG | - | chr5_1:23162880-23162899 | None:intergenic | 40.0% | |
| CTCATGTAAATAGAACCGGA+GGG | - | chr5_1:23163321-23163340 | None:intergenic | 40.0% | |
| TCTCATGTAAATAGAACCGG+AGG | - | chr5_1:23163322-23163341 | None:intergenic | 40.0% | |
| CAAATCGATTATACTCCCTC+CGG | - | chr5_1:23163456-23163475 | None:intergenic | 40.0% | |
| GAAGGTTTGAGAAGCAAGTT+TGG | + | chr5_1:23163506-23163525 | Msa0724550:intron | 40.0% | |
| GCAAGTTTGGATTTCTTCCA+AGG | + | chr5_1:23163519-23163538 | Msa0724550:intron | 40.0% | |
| AAATCAACTTTCCAAGGGCT+TGG | + | chr5_1:23163579-23163598 | Msa0724550:intron | 40.0% | |
| AGGATTCAAACCCAAGAAAG+GGG | - | chr5_1:23163671-23163690 | None:intergenic | 40.0% | |
| GAGGATTCAAACCCAAGAAA+GGG | - | chr5_1:23163672-23163691 | None:intergenic | 40.0% | |
| TGAGCTAAGGGAAAATGAGT+TGG | - | chr5_1:23163694-23163713 | None:intergenic | 40.0% | |
| TCTGTGCATACTCTTGCAAT+CGG | - | chr5_1:23163840-23163859 | None:intergenic | 40.0% | |
| AGTAGTTGTATACACAGGTG+CGG | - | chr5_1:23163875-23163894 | None:intergenic | 40.0% | |
| !! | ACGACGTTGATAACAACACC+AGG | - | chr5_1:23160985-23161004 | None:intergenic | 45.0% |
| TGTTATCAACGTCGTTCTGC+CGG | + | chr5_1:23160990-23161009 | Msa0724550:CDS | 45.0% | |
| ATTCCATTTGAGAGCAGTGC+TGG | - | chr5_1:23161033-23161052 | None:intergenic | 45.0% | |
| AAACATCAGCCACGCGTTAA+TGG | - | chr5_1:23161730-23161749 | None:intergenic | 45.0% | |
| ! | GTGTTTGGGATGTGAATTGG+GGG | - | chr5_1:23162193-23162212 | None:intergenic | 45.0% |
| ACGTATACAACGAGGAGAGA+AGG | + | chr5_1:23162263-23162282 | Msa0724550:intron | 45.0% | |
| GTGTCGGATCTGCAAATTCT+GGG | + | chr5_1:23162318-23162337 | Msa0724550:intron | 45.0% | |
| CCAGAAACATTCGCTATCCA+TGG | - | chr5_1:23162386-23162405 | None:intergenic | 45.0% | |
| CCATGGATAGCGAATGTTTC+TGG | + | chr5_1:23162383-23162402 | Msa0724550:intron | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | + | chr5_1:23163437-23163456 | Msa0724550:intron | 45.0% | |
| CTCTTGTAAATAGGACCGGA+GGG | + | chr5_1:23163438-23163457 | Msa0724550:intron | 45.0% | |
| AACTAGTAGCACATGCCACA+TGG | - | chr5_1:23163550-23163569 | None:intergenic | 45.0% | |
| GGAGGATTCAAACCCAAGAA+AGG | - | chr5_1:23163673-23163692 | None:intergenic | 45.0% | |
| ! | GCTAAGGGAAAATGAGTTGG+AGG | - | chr5_1:23163691-23163710 | None:intergenic | 45.0% |
| ! | GCAATCGGTTCTTGAACATG+TGG | - | chr5_1:23163825-23163844 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr5_1:23161320-23161339 | None:intergenic | 5.0% |
| !! | TCTATATATATATATATATA+GGG | + | chr5_1:23162602-23162621 | Msa0724550:intron | 5.0% |
| CAAAACAACATGGTCGGTCC+TGG | + | chr5_1:23160964-23160983 | Msa0724550:CDS | 50.0% | |
| ! | CATTTGAGAGCAGTGCTGGA+AGG | - | chr5_1:23161029-23161048 | None:intergenic | 50.0% |
| CTTCCAGCACTGCTCTCAAA+TGG | + | chr5_1:23161027-23161046 | Msa0724550:CDS | 50.0% | |
| GCGCAGAATTTCGTTGGCAA+CGG | + | chr5_1:23161059-23161078 | Msa0724550:CDS | 50.0% | |
| CAGAATTTCGTTGGCAACGG+CGG | + | chr5_1:23161062-23161081 | Msa0724550:CDS | 50.0% | |
| ATCGATCCACCATTAACGCG+TGG | + | chr5_1:23161718-23161737 | Msa0724550:intron | 50.0% | |
| CGTGTCGGATCTGCAAATTC+TGG | + | chr5_1:23162317-23162336 | Msa0724550:intron | 50.0% | |
| TCTTCCAAGGTCCTACCATG+TGG | + | chr5_1:23163532-23163551 | Msa0724550:intron | 50.0% | |
| AGTAGCACATGCCACATGGT+AGG | - | chr5_1:23163546-23163565 | None:intergenic | 50.0% | |
| AGCAAATTGCTCCAAGCCCT+TGG | - | chr5_1:23163593-23163612 | None:intergenic | 50.0% | |
| !! | GCTCAGCTGGTTTGAGCTAA+GGG | - | chr5_1:23163706-23163725 | None:intergenic | 50.0% |
| !! | AGCTCAGCTGGTTTGAGCTA+AGG | - | chr5_1:23163707-23163726 | None:intergenic | 50.0% |
| ! | TGAGAGCAGTGCTGGAAGGT+CGG | - | chr5_1:23161025-23161044 | None:intergenic | 55.0% |
| ACGGCAGCGCAGAATTTCGT+TGG | + | chr5_1:23161053-23161072 | Msa0724550:CDS | 55.0% | |
| ACTACAATGGAGTGAGCGCG+TGG | + | chr5_1:23161121-23161140 | Msa0724550:intron | 55.0% | |
| CTACAATGGAGTGAGCGCGT+GGG | + | chr5_1:23161122-23161141 | Msa0724550:intron | 55.0% | |
| CATCAGCCACGCGTTAATGG+TGG | - | chr5_1:23161727-23161746 | None:intergenic | 55.0% | |
| CATGCCACATGGTAGGACCT+TGG | - | chr5_1:23163539-23163558 | None:intergenic | 55.0% | |
| TGAGGGTTGGATAGCTCAGC+TGG | - | chr5_1:23163719-23163738 | None:intergenic | 55.0% | |
| ! | GGAAGGTCGGAAGTGCATGC+CGG | - | chr5_1:23161012-23161031 | None:intergenic | 60.0% |
| CGGCGCGTAGCTGGAGATTT+GGG | + | chr5_1:23161082-23161101 | Msa0724550:intron | 60.0% | |
| GCGGCGCGTAGCTGGAGATT+TGG | + | chr5_1:23161081-23161100 | Msa0724550:intron | 65.0% | |
| TGGCAACGGCGGCGCGTAGC+TGG | + | chr5_1:23161073-23161092 | Msa0724550:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 23160952 | 23164017 | 23160952 | ID=Msa0724550;Name=Msa0724550 |
| chr5_1 | mRNA | 23160952 | 23164017 | 23160952 | ID=Msa0724550-mRNA-1;Parent=Msa0724550;Name=Msa0724550-mRNA-1;_AED=0.75;_eAED=0.75;_QI=0|0|0|0.5|0|0.5|2|0|114 |
| chr5_1 | exon | 23160952 | 23161087 | 23160952 | ID=Msa0724550-mRNA-1:exon:8657;Parent=Msa0724550-mRNA-1 |
| chr5_1 | exon | 23163809 | 23164017 | 23163809 | ID=Msa0724550-mRNA-1:exon:8658;Parent=Msa0724550-mRNA-1 |
| chr5_1 | CDS | 23160952 | 23161087 | 23160952 | ID=Msa0724550-mRNA-1:cds;Parent=Msa0724550-mRNA-1 |
| chr5_1 | CDS | 23163809 | 23164017 | 23163809 | ID=Msa0724550-mRNA-1:cds;Parent=Msa0724550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
