Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924280 | XP_003620361.1 | 91.429 | 315 | 6 | 2 | 1 | 315 | 1 | 294 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0172320 | Msa0924280 | 0.818567 | 1.832141e-52 | -8.615850e-47 |
| Msa0191890 | Msa0924280 | 0.813734 | 2.202720e-51 | -8.615850e-47 |
| Msa0275660 | Msa0924280 | 0.818655 | 1.750284e-52 | -8.615850e-47 |
| Msa0526650 | Msa0924280 | 0.821378 | 4.168148e-53 | -8.615850e-47 |
| Msa0526760 | Msa0924280 | 0.800466 | 1.422137e-48 | -8.615850e-47 |
| Msa0572420 | Msa0924280 | 0.800467 | 1.421885e-48 | -8.615850e-47 |
| Msa0924280 | Msa1390250 | 0.822124 | 2.801268e-53 | -8.615850e-47 |
| Msa0924280 | Msa1401270 | 0.811588 | 6.494100e-51 | -8.615850e-47 |
| Msa0924280 | Msa1422020 | 0.940665 | 1.581422e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924280 | MtrunA17_Chr6g0483441 | 91.429 | 315 | 6 | 2 | 1 | 315 | 1 | 294 | 0.0 | 578 |
| Msa0924280 | MtrunA17_Chr8g0392551 | 66.250 | 320 | 79 | 7 | 1 | 315 | 1 | 296 | 2.15e-123 | 355 |
| Msa0924280 | MtrunA17_Chr4g0053001 | 48.538 | 342 | 126 | 9 | 1 | 315 | 12 | 330 | 1.14e-92 | 278 |
| Msa0924280 | MtrunA17_Chr4g0038691 | 44.118 | 340 | 136 | 10 | 1 | 314 | 6 | 317 | 4.45e-74 | 230 |
| Msa0924280 | MtrunA17_Chr2g0331671 | 38.838 | 327 | 159 | 9 | 7 | 315 | 6 | 309 | 4.03e-64 | 204 |
| Msa0924280 | MtrunA17_Chr6g0486001 | 36.527 | 334 | 165 | 8 | 1 | 315 | 1 | 306 | 3.71e-56 | 184 |
| Msa0924280 | MtrunA17_Chr3g0091821 | 40.854 | 164 | 89 | 4 | 155 | 315 | 36 | 194 | 4.82e-35 | 125 |
| Msa0924280 | MtrunA17_Chr8g0379281 | 33.171 | 205 | 94 | 7 | 23 | 222 | 20 | 186 | 1.21e-14 | 71.6 |
| Msa0924280 | MtrunA17_Chr8g0379271 | 40.000 | 95 | 53 | 2 | 222 | 314 | 1 | 93 | 2.01e-13 | 65.1 |
| Msa0924280 | MtrunA17_Chr3g0090061 | 23.894 | 226 | 130 | 7 | 89 | 297 | 129 | 329 | 4.35e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924280 | AT1G45688.1 | 46.685 | 362 | 120 | 9 | 1 | 313 | 1 | 338 | 2.21e-95 | 286 |
| Msa0924280 | AT5G42860.1 | 48.246 | 342 | 122 | 11 | 1 | 313 | 1 | 316 | 4.60e-90 | 271 |
| Msa0924280 | AT1G45688.2 | 49.600 | 250 | 74 | 8 | 1 | 222 | 1 | 226 | 1.40e-69 | 217 |
| Msa0924280 | AT4G35170.1 | 37.736 | 318 | 153 | 8 | 18 | 313 | 3 | 297 | 6.49e-59 | 191 |
| Msa0924280 | AT2G41990.1 | 36.858 | 331 | 154 | 11 | 1 | 312 | 1 | 295 | 1.10e-47 | 162 |
| Msa0924280 | AT3G24605.1 | 32.895 | 304 | 164 | 9 | 1 | 293 | 3 | 277 | 5.36e-38 | 137 |
| Msa0924280 | AT3G24600.1 | 30.032 | 313 | 174 | 8 | 8 | 301 | 3 | 289 | 5.38e-29 | 113 |
| Msa0924280 | AT3G08490.1 | 21.502 | 293 | 184 | 8 | 30 | 312 | 11 | 267 | 6.09e-11 | 62.4 |
Find 88 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAACACTGGCACTTTCTT+TGG | 0.173423 | 6_2:+66055338 | Msa0924280:CDS |
| ATTAATTAATATAATCAAAA+TGG | 0.180153 | 6_2:-66056725 | None:intergenic |
| AGCTTATGTACTTGGAAATT+TGG | 0.181196 | 6_2:+66056316 | Msa0924280:CDS |
| TGAATATTCATATATGTTAA+AGG | 0.229177 | 6_2:+66056437 | Msa0924280:exon |
| AGAGAAAGATGAGAATAATT+TGG | 0.254028 | 6_2:-66053613 | None:intergenic |
| TAATGGATTCCTTTGAGATA+TGG | 0.280476 | 6_2:+66056521 | Msa0924280:three_prime_UTR |
| ACTAGAGCACCAAGTTTCTT+AGG | 0.281801 | 6_2:-66056386 | None:intergenic |
| TGAAGCACAAATACTATAAA+AGG | 0.290325 | 6_2:+66056339 | Msa0924280:CDS |
| GAAAGTGTAAAAGAATTATT+AGG | 0.332630 | 6_2:+66056474 | Msa0924280:three_prime_UTR |
| AGAGGAATGGTGGTTATTCT+AGG | 0.334315 | 6_2:+66054093 | Msa0924280:CDS |
| TCAGATATAGTCATTGCTTC+AGG | 0.340073 | 6_2:+66055398 | Msa0924280:CDS |
| ACAAACCTTGATCACAATCT+TGG | 0.367265 | 6_2:-66054207 | None:intergenic |
| ACTCAGAAGGCAAGATGATT+AGG | 0.375717 | 6_2:+66056571 | Msa0924280:three_prime_UTR |
| GAATTTCAAAGTAGAGTTCA+TGG | 0.389229 | 6_2:-66055309 | None:intergenic |
| GAATATTCATATATGTTAAA+GGG | 0.389673 | 6_2:+66056438 | Msa0924280:exon |
| ATCACAATCTTGGGCTTCAT+AGG | 0.399696 | 6_2:-66054197 | None:intergenic |
| TTGATCTCATCACAAAGTTA+AGG | 0.410482 | 6_2:-66056292 | None:intergenic |
| TTTGTGGTTTGTGTTAGTTT+TGG | 0.412665 | 6_2:-66053654 | None:intergenic |
| TGAGATATGGATGGAATTGA+TGG | 0.423689 | 6_2:+66056534 | Msa0924280:three_prime_UTR |
| ACTTATGATATTATGATTTG+TGG | 0.426768 | 6_2:-66053670 | None:intergenic |
| AGTGGAAGAATCTGTACAAC+TGG | 0.427781 | 6_2:-66053588 | None:intergenic |
| GAAGCCCAAGATTGTGATCA+AGG | 0.437262 | 6_2:+66054202 | Msa0924280:CDS |
| TTTAGGGTTGAAATCTGATT+GGG | 0.440374 | 6_2:+66055009 | Msa0924280:CDS |
| ATTGATGTTATTGAAGAAGA+AGG | 0.441499 | 6_2:+66054056 | Msa0924280:CDS |
| GGTAGCAAGGTCCCTTTGTA+TGG | 0.447350 | 6_2:+66056212 | Msa0924280:CDS |
| CAAACCTTGATCACAATCTT+GGG | 0.451461 | 6_2:-66054206 | None:intergenic |
| CAAGCTGGTTCGGATTCGAC+TGG | 0.458128 | 6_2:+66055266 | Msa0924280:CDS |
| GCAAGCCTTAGCAGCACAAC+GGG | 0.460597 | 6_2:+66056242 | Msa0924280:CDS |
| TGTTACCGTCCAAGCTGGTT+CGG | 0.463364 | 6_2:+66055256 | Msa0924280:CDS |
| AGATCAAGAGCTTATGTACT+TGG | 0.464263 | 6_2:+66056308 | Msa0924280:CDS |
| TTAATTAATATAATCAAAAT+GGG | 0.471258 | 6_2:-66056724 | None:intergenic |
| ACCTTGGATCCTAAGAAACT+TGG | 0.478203 | 6_2:+66056377 | Msa0924280:CDS |
| ATCACAAAGTTAAGGTTCAA+TGG | 0.479277 | 6_2:-66056284 | None:intergenic |
| GAATGATGAGGTGAAGCAAC+AGG | 0.483777 | 6_2:-66053954 | None:intergenic |
| CCATGTTTCAGCTACACCCT+TGG | 0.488475 | 6_2:+66055364 | Msa0924280:CDS |
| TTGATGTTATTGAAGAAGAA+GGG | 0.490404 | 6_2:+66054057 | Msa0924280:CDS |
| ATCTAGGAAGAGTCATAGAT+TGG | 0.493508 | 6_2:+66056172 | Msa0924280:CDS |
| TTGGAGAAAGAGAGGAATGG+TGG | 0.495776 | 6_2:+66054083 | Msa0924280:CDS |
| GGACAAAGATCATGTTGGTT+CGG | 0.497730 | 6_2:+66056623 | Msa0924280:three_prime_UTR |
| AAGCTGGTTCGGATTCGACT+GGG | 0.499334 | 6_2:+66055267 | Msa0924280:CDS |
| TGAAGGAGTTTCATCAATCT+AGG | 0.500553 | 6_2:+66056156 | Msa0924280:CDS |
| ATTGGTGAGTGTGGCAGTGA+TGG | 0.501754 | 6_2:+66056190 | Msa0924280:CDS |
| ATAACATCAATATGCTTCCA+TGG | 0.513867 | 6_2:-66054044 | None:intergenic |
| GGACTTTGAACGTAGTATAG+TGG | 0.522534 | 6_2:-66053885 | None:intergenic |
| GCATACCCGTTGTGCTGCTA+AGG | 0.522833 | 6_2:-66056247 | None:intergenic |
| CGACGTGGTGGTGATCTTGT+TGG | 0.523915 | 6_2:-66053861 | None:intergenic |
| AAGTTAAGGTTCAATGGCAC+TGG | 0.526221 | 6_2:-66056278 | None:intergenic |
| CGAATCCGAACCAGCTTGGA+CGG | 0.529659 | 6_2:-66055261 | None:intergenic |
| TTGCACCACTTCCATACAAA+GGG | 0.535212 | 6_2:-66056223 | None:intergenic |
| ACCAAGTTTCTTAGGATCCA+AGG | 0.536037 | 6_2:-66056378 | None:intergenic |
| GTGAAGCAACAGGTGTTGAA+TGG | 0.539497 | 6_2:-66053944 | None:intergenic |
| GAACATGTTACCGTCCAAGC+TGG | 0.543885 | 6_2:+66055251 | Msa0924280:CDS |
| GATTCAATGTTCCATCACCT+TGG | 0.548796 | 6_2:+66056361 | Msa0924280:CDS |
| TTGGTGAGTGTGGCAGTGAT+GGG | 0.550942 | 6_2:+66056191 | Msa0924280:CDS |
| AAGGTCCCTTTGTATGGAAG+TGG | 0.551894 | 6_2:+66056218 | Msa0924280:CDS |
| AAATTCACATACCGCAACAC+TGG | 0.552172 | 6_2:+66055326 | Msa0924280:CDS |
| AGAATCATAGTGTTAATCCA+TGG | 0.554930 | 6_2:+66054027 | Msa0924280:CDS |
| GAGATATGGATGGAATTGAT+GGG | 0.559554 | 6_2:+66056535 | Msa0924280:three_prime_UTR |
| TTTCTTAGGATCCAAGGTGA+TGG | 0.560780 | 6_2:-66056372 | None:intergenic |
| CATATGTGCAAGAATTCTTG+AGG | 0.561648 | 6_2:-66056412 | None:intergenic |
| GTTCTTTGAATTATGCAATG+AGG | 0.563916 | 6_2:+66056602 | Msa0924280:three_prime_UTR |
| GATGAGAATAATTTGGACAG+TGG | 0.564663 | 6_2:-66053606 | None:intergenic |
| ATATGTGCAAGAATTCTTGA+GGG | 0.565567 | 6_2:-66056411 | None:intergenic |
| CAGTCGAATCCGAACCAGCT+TGG | 0.565808 | 6_2:-66055265 | None:intergenic |
| GGATTCCTTTGAGATATGGA+TGG | 0.566300 | 6_2:+66056525 | Msa0924280:three_prime_UTR |
| CCAAGGGTGTAGCTGAAACA+TGG | 0.583937 | 6_2:-66055364 | None:intergenic |
| ATCTGAATAAGACAGTTCCA+AGG | 0.596282 | 6_2:-66055381 | None:intergenic |
| GAGTCATAGATTGGTGAGTG+TGG | 0.597085 | 6_2:+66056181 | Msa0924280:CDS |
| TTCAATGGCACTGGAACTGT+AGG | 0.597432 | 6_2:-66056269 | None:intergenic |
| CAAAGAAAGTGCCAGTGTTG+CGG | 0.604498 | 6_2:-66055337 | None:intergenic |
| AGCAACAGGTGTTGAATGGA+AGG | 0.610713 | 6_2:-66053940 | None:intergenic |
| TCTGAATAAGACAGTTCCAA+GGG | 0.610970 | 6_2:-66055380 | None:intergenic |
| CAATTCCATCCATATCTCAA+AGG | 0.611390 | 6_2:-66056530 | None:intergenic |
| CTTGCACCACTTCCATACAA+AGG | 0.614462 | 6_2:-66056224 | None:intergenic |
| TAGTATAGTGGACGACGTGG+TGG | 0.617154 | 6_2:-66053873 | None:intergenic |
| TGTGGCAGTGATGGGTAGCA+AGG | 0.618679 | 6_2:+66056199 | Msa0924280:CDS |
| GATACAGCTCAGAACTCAGA+AGG | 0.623173 | 6_2:+66056558 | Msa0924280:three_prime_UTR |
| TGGTTCGGATTCGACTGGGG+TGG | 0.641387 | 6_2:+66055271 | Msa0924280:CDS |
| GGGTTGAAATCTGATTGGGT+TGG | 0.642747 | 6_2:+66055013 | Msa0924280:CDS |
| TGCAAGCCTTAGCAGCACAA+CGG | 0.643607 | 6_2:+66056241 | Msa0924280:CDS |
| AATGAGGACAAAGATCATGT+TGG | 0.645906 | 6_2:+66056618 | Msa0924280:three_prime_UTR |
| TGAATGGAAGGATGTAGTGA+CGG | 0.653571 | 6_2:-66053928 | None:intergenic |
| AGCTGGTTCGGATTCGACTG+GGG | 0.661111 | 6_2:+66055268 | Msa0924280:CDS |
| AGATATGGATGGAATTGATG+GGG | 0.666943 | 6_2:+66056536 | Msa0924280:three_prime_UTR |
| GTTCATGGTGATCATATCAG+TGG | 0.667894 | 6_2:-66055294 | None:intergenic |
| GTGGAAGAAGAAGAATGATG+AGG | 0.698905 | 6_2:-66053966 | None:intergenic |
| ACGTAGTATAGTGGACGACG+TGG | 0.744646 | 6_2:-66053876 | None:intergenic |
| GTTCAAAGTCCATCACACGA+CGG | 0.801345 | 6_2:+66053897 | Msa0924280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATTTTTTTTATTAA+TGG | + | chr6_2:66056504-66056523 | Msa0924280:three_prime_UTR | 0.0% |
| !!! | ATGATAAATTTTTCAATTTT+AGG | + | chr6_2:66054406-66054425 | Msa0924280:intron | 10.0% |
| !!! | AAAATTAATTTTGATTAGAT+TGG | + | chr6_2:66055754-66055773 | Msa0924280:intron | 10.0% |
| !!! | TTTTGATTATTGTTTTTTGA+GGG | + | chr6_2:66054231-66054250 | Msa0924280:intron | 15.0% |
| !!! | TTTATTGATTTTGTGATTTT+AGG | + | chr6_2:66054322-66054341 | Msa0924280:intron | 15.0% |
| !! | TGAATATTCATATATGTTAA+AGG | + | chr6_2:66056437-66056456 | Msa0924280:exon | 15.0% |
| !! | GAATATTCATATATGTTAAA+GGG | + | chr6_2:66056438-66056457 | Msa0924280:exon | 15.0% |
| !! | ACTTATGATATTATGATTTG+TGG | - | chr6_2:66053673-66053692 | None:intergenic | 20.0% |
| !! | AGAAATAGAAGAAAAAACAT+AGG | + | chr6_2:66053730-66053749 | Msa0924280:five_prime_UTR | 20.0% |
| !!! | GTTTTGATTATTGTTTTTTG+AGG | + | chr6_2:66054230-66054249 | Msa0924280:intron | 20.0% |
| !!! | GTGATAAATTTTGCTTTTTT+AGG | + | chr6_2:66054364-66054383 | Msa0924280:intron | 20.0% |
| !!! | ATGTTCAATTTTGCATTTTA+GGG | + | chr6_2:66054448-66054467 | Msa0924280:intron | 20.0% |
| !!! | AGATCAATTTTGCATTTTTA+AGG | + | chr6_2:66054491-66054510 | Msa0924280:intron | 20.0% |
| !!! | GATCAATTTTGCATTTTTAA+GGG | + | chr6_2:66054492-66054511 | Msa0924280:intron | 20.0% |
| !!! | TTTTAAGTTGAAATGTAAAC+TGG | + | chr6_2:66054591-66054610 | Msa0924280:intron | 20.0% |
| !!! | TTTAAGTTGAAATGTAAACT+GGG | + | chr6_2:66054592-66054611 | Msa0924280:intron | 20.0% |
| !!! | AAGATCAATTTTGCATTTTT+AGG | + | chr6_2:66054657-66054676 | Msa0924280:intron | 20.0% |
| !!! | AGATCAATTTTGCATTTTTA+GGG | + | chr6_2:66054491-66054510 | Msa0924280:intron | 20.0% |
| !!! | TTTTAGGTTGAAATTTGAAT+TGG | + | chr6_2:66054725-66054744 | Msa0924280:intron | 20.0% |
| !!! | TTTAGGTTGAAATTTGAATT+GGG | + | chr6_2:66054726-66054745 | Msa0924280:intron | 20.0% |
| !!! | ATGATCAAATTTGGATTTTT+AGG | + | chr6_2:66054792-66054811 | Msa0924280:intron | 20.0% |
| !!! | TATCCATTTTGCATTATTTT+AGG | + | chr6_2:66055120-66055139 | Msa0924280:intron | 20.0% |
| !!! | GTAGTTAAGAAAATTGATTT+TGG | + | chr6_2:66055456-66055475 | Msa0924280:intron | 20.0% |
| !! | ATTAAGAAGTTTCAATTTGT+AGG | - | chr6_2:66055643-66055662 | None:intergenic | 20.0% |
| !!! | CAAAAATCAATTTTAAGTCA+TGG | + | chr6_2:66055941-66055960 | Msa0924280:intron | 20.0% |
| !! | TGTGTTAGAAAAATACAAAA+GGG | - | chr6_2:66056122-66056141 | None:intergenic | 20.0% |
| !! | ATGTGTTAGAAAAATACAAA+AGG | - | chr6_2:66056123-66056142 | None:intergenic | 20.0% |
| !!! | GAAAGTGTAAAAGAATTATT+AGG | + | chr6_2:66056474-66056493 | Msa0924280:three_prime_UTR | 20.0% |
| ! | AGAGAAAGATGAGAATAATT+TGG | - | chr6_2:66053616-66053635 | None:intergenic | 25.0% |
| ! | ATTGATGTTATTGAAGAAGA+AGG | + | chr6_2:66054056-66054075 | Msa0924280:CDS | 25.0% |
| ! | TTGATGTTATTGAAGAAGAA+GGG | + | chr6_2:66054057-66054076 | Msa0924280:CDS | 25.0% |
| !!! | TTTGTTTTCGCTTATTCTTT+GGG | + | chr6_2:66054163-66054182 | Msa0924280:CDS | 25.0% |
| !!! | TATTGTTTTTTGAGGGTTTT+TGG | + | chr6_2:66054238-66054257 | Msa0924280:intron | 25.0% |
| !! | TTTGATTGATTGTTCAGTTT+TGG | + | chr6_2:66054279-66054298 | Msa0924280:intron | 25.0% |
| !!! | TTTTGGAATGTGATTTGAAT+TGG | + | chr6_2:66054296-66054315 | Msa0924280:intron | 25.0% |
| !! | TTTGGAATGTGATTTGAATT+GGG | + | chr6_2:66054297-66054316 | Msa0924280:intron | 25.0% |
| !!! | TTTTAGGATGTGATTTGAAT+TGG | + | chr6_2:66054338-66054357 | Msa0924280:intron | 25.0% |
| !!! | TTTTAGGATGAAATTTGAAC+TGG | + | chr6_2:66054380-66054399 | Msa0924280:intron | 25.0% |
| !! | TTTAGGATGAAATTTGAACT+GGG | + | chr6_2:66054381-66054400 | Msa0924280:intron | 25.0% |
| !!! | TTTTAGGTTGAAATGTAAAC+TGG | + | chr6_2:66054422-66054441 | Msa0924280:intron | 25.0% |
| !!! | TTTAGGTTGAAATGTAAACT+GGG | + | chr6_2:66054423-66054442 | Msa0924280:intron | 25.0% |
| !! | CATGTTCAATTTTGCATTTT+AGG | + | chr6_2:66054447-66054466 | Msa0924280:intron | 25.0% |
| !!! | TTTAAGGGTGAAATTTTAAC+TGG | + | chr6_2:66054507-66054526 | Msa0924280:intron | 25.0% |
| !!! | TTAAGGGTGAAATTTTAACT+GGG | + | chr6_2:66054508-66054527 | Msa0924280:intron | 25.0% |
| !!! | TTTTAAGATGATGTTTGAAC+TGG | + | chr6_2:66054549-66054568 | Msa0924280:intron | 25.0% |
| !! | TTTAAGATGATGTTTGAACT+GGG | + | chr6_2:66054550-66054569 | Msa0924280:intron | 25.0% |
| !!! | CATTTTTAAGATGATCTGAA+CGG | + | chr6_2:66054630-66054649 | Msa0924280:intron | 25.0% |
| !!! | ATTTTTAAGATGATCTGAAC+GGG | + | chr6_2:66054631-66054650 | Msa0924280:intron | 25.0% |
| ! | TTGAAAACTTGAAATCTGAA+TGG | + | chr6_2:66054681-66054700 | Msa0924280:intron | 25.0% |
| ! | TGAAAACTTGAAATCTGAAT+GGG | + | chr6_2:66054682-66054701 | Msa0924280:intron | 25.0% |
| ! | TTGTAGAATGAAATTTGAAC+TGG | + | chr6_2:66054766-66054785 | Msa0924280:intron | 25.0% |
| ! | TGTAGAATGAAATTTGAACT+GGG | + | chr6_2:66054767-66054786 | Msa0924280:intron | 25.0% |
| !!! | TCAATTTTGCATTTTTAGAG+TGG | + | chr6_2:66054905-66054924 | Msa0924280:intron | 25.0% |
| !!! | TTTTGACTTGAAATCTTAAC+TGG | + | chr6_2:66054960-66054979 | Msa0924280:intron | 25.0% |
| !!! | TTTGACTTGAAATCTTAACT+GGG | + | chr6_2:66054961-66054980 | Msa0924280:intron | 25.0% |
| ! | TCAACCTGAAAATGAAAAAT+TGG | - | chr6_2:66055043-66055062 | None:intergenic | 25.0% |
| ! | AATGGAAACTTATCAAAAAC+CGG | - | chr6_2:66055074-66055093 | None:intergenic | 25.0% |
| ! | GTTCAGATTCATTATAGAAA+TGG | - | chr6_2:66055092-66055111 | None:intergenic | 25.0% |
| ! | CATCCTAAAATAATGCAAAA+TGG | - | chr6_2:66055126-66055145 | None:intergenic | 25.0% |
| ! | ATAAAAAATTGAACATGTCC+CGG | - | chr6_2:66055161-66055180 | None:intergenic | 25.0% |
| ! | CAAGTTATAATTCATTCTAG+AGG | + | chr6_2:66055586-66055605 | Msa0924280:intron | 25.0% |
| ! | TTGAGTGTATAAATCATGTT+TGG | + | chr6_2:66055855-66055874 | Msa0924280:intron | 25.0% |
| !!! | ATTGATTTTTGTATGTTCGA+TGG | - | chr6_2:66055932-66055951 | None:intergenic | 25.0% |
| ! | TGAAGCACAAATACTATAAA+AGG | + | chr6_2:66056339-66056358 | Msa0924280:CDS | 25.0% |
| !! | TTTGTGGTTTGTGTTAGTTT+TGG | - | chr6_2:66053657-66053676 | None:intergenic | 30.0% |
| AGAATCATAGTGTTAATCCA+TGG | + | chr6_2:66054027-66054046 | Msa0924280:CDS | 30.0% | |
| ATAACATCAATATGCTTCCA+TGG | - | chr6_2:66054047-66054066 | None:intergenic | 30.0% | |
| ! | TATTGAAGAAGAAGGGTTTT+TGG | + | chr6_2:66054064-66054083 | Msa0924280:CDS | 30.0% |
| !!! | TTCTAGGAAGTGTTATTTTC+TGG | + | chr6_2:66054109-66054128 | Msa0924280:CDS | 30.0% |
| !!! | TATTTTCTGGCTTTTGTTGT+TGG | + | chr6_2:66054122-66054141 | Msa0924280:CDS | 30.0% |
| !!! | ATTTTCTGGCTTTTGTTGTT+GGG | + | chr6_2:66054123-66054142 | Msa0924280:CDS | 30.0% |
| !!! | CTTTGTTTTCGCTTATTCTT+TGG | + | chr6_2:66054162-66054181 | Msa0924280:CDS | 30.0% |
| ! | TTGTTTTCGCTTATTCTTTG+GGG | + | chr6_2:66054164-66054183 | Msa0924280:CDS | 30.0% |
| ! | TTTTTGGATGAAATTGGAAC+TGG | + | chr6_2:66054254-66054273 | Msa0924280:intron | 30.0% |
| ! | TTTTGGATGAAATTGGAACT+GGG | + | chr6_2:66054255-66054274 | Msa0924280:intron | 30.0% |
| ! | TTTAGGGTTGAAATATGAAC+TGG | + | chr6_2:66054464-66054483 | Msa0924280:intron | 30.0% |
| TTAGGGTTGAAATATGAACT+GGG | + | chr6_2:66054465-66054484 | Msa0924280:intron | 30.0% | |
| !!! | TTTTTAAGATGATCTGAACG+GGG | + | chr6_2:66054632-66054651 | Msa0924280:intron | 30.0% |
| TCAACCTAAAAGTGAAACAT+TGG | - | chr6_2:66054716-66054735 | None:intergenic | 30.0% | |
| ! | TTTAGGTTTGAAACGTAAAC+TGG | + | chr6_2:66054809-66054828 | Msa0924280:intron | 30.0% |
| ! | ATGAACAGCTTGGATTTTTA+GGG | + | chr6_2:66054993-66055012 | Msa0924280:intron | 30.0% |
| !!! | TTTTAGGGTTGAAATCTGAT+TGG | + | chr6_2:66055008-66055027 | Msa0924280:CDS | 30.0% |
| ! | TTTAGGGTTGAAATCTGATT+GGG | + | chr6_2:66055009-66055028 | Msa0924280:CDS | 30.0% |
| ! | TGCTCCAATTTTTCATTTTC+AGG | + | chr6_2:66055036-66055055 | Msa0924280:CDS | 30.0% |
| TAGGATGATGAAATCTTAAC+CGG | + | chr6_2:66055139-66055158 | Msa0924280:intron | 30.0% | |
| GAATTTCAAAGTAGAGTTCA+TGG | - | chr6_2:66055312-66055331 | None:intergenic | 30.0% | |
| GATTCACTAACTCATTTGTT+TGG | + | chr6_2:66055429-66055448 | Msa0924280:intron | 30.0% | |
| ! | TGAGTTGAACAATAAATGTG+AGG | + | chr6_2:66055533-66055552 | Msa0924280:intron | 30.0% |
| ! | GAAGCTGAGATTTGTAATTT+TGG | - | chr6_2:66055567-66055586 | None:intergenic | 30.0% |
| AAACATTGTGATTGTGTGTT+TGG | + | chr6_2:66055612-66055631 | Msa0924280:intron | 30.0% | |
| ! | TTTTCACAGTGAGTTTACAT+TGG | + | chr6_2:66055662-66055681 | Msa0924280:intron | 30.0% |
| TTTCACAGTGAGTTTACATT+GGG | + | chr6_2:66055663-66055682 | Msa0924280:intron | 30.0% | |
| ! | ACAAACACTAAGCATGTTTT+TGG | - | chr6_2:66055717-66055736 | None:intergenic | 30.0% |
| !! | GAATTGATTGACTCTAGAAT+TGG | - | chr6_2:66055899-66055918 | None:intergenic | 30.0% |
| TCCAAACATGCATATATAGT+TGG | + | chr6_2:66056059-66056078 | Msa0924280:intron | 30.0% | |
| ACCAACTATATATGCATGTT+TGG | - | chr6_2:66056063-66056082 | None:intergenic | 30.0% | |
| ! | ACATTGATTATTGCAGATGA+AGG | + | chr6_2:66056139-66056158 | Msa0924280:intron | 30.0% |
| ATCACAAAGTTAAGGTTCAA+TGG | - | chr6_2:66056287-66056306 | None:intergenic | 30.0% | |
| TTGATCTCATCACAAAGTTA+AGG | - | chr6_2:66056295-66056314 | None:intergenic | 30.0% | |
| AGCTTATGTACTTGGAAATT+TGG | + | chr6_2:66056316-66056335 | Msa0924280:CDS | 30.0% | |
| ATATGTGCAAGAATTCTTGA+GGG | - | chr6_2:66056414-66056433 | None:intergenic | 30.0% | |
| !! | TAATGGATTCCTTTGAGATA+TGG | + | chr6_2:66056521-66056540 | Msa0924280:three_prime_UTR | 30.0% |
| GTTCTTTGAATTATGCAATG+AGG | + | chr6_2:66056602-66056621 | Msa0924280:three_prime_UTR | 30.0% | |
| GATGAGAATAATTTGGACAG+TGG | - | chr6_2:66053609-66053628 | None:intergenic | 35.0% | |
| CTTAGAAGCAGAAAAATGAG+TGG | - | chr6_2:66053988-66054007 | None:intergenic | 35.0% | |
| !! | TTTTTGGAGAAAGAGAGGAA+TGG | + | chr6_2:66054080-66054099 | Msa0924280:CDS | 35.0% |
| CAAACCTTGATCACAATCTT+GGG | - | chr6_2:66054209-66054228 | None:intergenic | 35.0% | |
| ACAAACCTTGATCACAATCT+TGG | - | chr6_2:66054210-66054229 | None:intergenic | 35.0% | |
| !! | TGAGGGTTTTTGGATGAAAT+TGG | + | chr6_2:66054248-66054267 | Msa0924280:intron | 35.0% |
| !! | TGCTCCAATGTTTCACTTTT+AGG | + | chr6_2:66054709-66054728 | Msa0924280:intron | 35.0% |
| AACTGGGTCATGATCAAATT+TGG | + | chr6_2:66054783-66054802 | Msa0924280:intron | 35.0% | |
| TCGTGTGTTGAAATTTGAAC+TGG | + | chr6_2:66054833-66054852 | Msa0924280:intron | 35.0% | |
| CGTGTGTTGAAATTTGAACT+GGG | + | chr6_2:66054834-66054853 | Msa0924280:intron | 35.0% | |
| ! | CATGAACAGCTTGGATTTTT+AGG | + | chr6_2:66054992-66055011 | Msa0924280:intron | 35.0% |
| !! | TTTCAGGTTGAAATCTGAAC+CGG | + | chr6_2:66055052-66055071 | Msa0924280:intron | 35.0% |
| AGGATGATGAAATCTTAACC+GGG | + | chr6_2:66055140-66055159 | Msa0924280:intron | 35.0% | |
| TCTGAATAAGACAGTTCCAA+GGG | - | chr6_2:66055383-66055402 | None:intergenic | 35.0% | |
| ATCTGAATAAGACAGTTCCA+AGG | - | chr6_2:66055384-66055403 | None:intergenic | 35.0% | |
| TCAGATATAGTCATTGCTTC+AGG | + | chr6_2:66055398-66055417 | Msa0924280:CDS | 35.0% | |
| !! | GTGTTTGTTTGTTTCTACTG+TGG | + | chr6_2:66055729-66055748 | Msa0924280:intron | 35.0% |
| TGAAGGAGTTTCATCAATCT+AGG | + | chr6_2:66056156-66056175 | Msa0924280:CDS | 35.0% | |
| ATCTAGGAAGAGTCATAGAT+TGG | + | chr6_2:66056172-66056191 | Msa0924280:CDS | 35.0% | |
| AGATCAAGAGCTTATGTACT+TGG | + | chr6_2:66056308-66056327 | Msa0924280:CDS | 35.0% | |
| CATATGTGCAAGAATTCTTG+AGG | - | chr6_2:66056415-66056434 | None:intergenic | 35.0% | |
| CAATTCCATCCATATCTCAA+AGG | - | chr6_2:66056533-66056552 | None:intergenic | 35.0% | |
| TGAGATATGGATGGAATTGA+TGG | + | chr6_2:66056534-66056553 | Msa0924280:three_prime_UTR | 35.0% | |
| GAGATATGGATGGAATTGAT+GGG | + | chr6_2:66056535-66056554 | Msa0924280:three_prime_UTR | 35.0% | |
| AGATATGGATGGAATTGATG+GGG | + | chr6_2:66056536-66056555 | Msa0924280:three_prime_UTR | 35.0% | |
| AATGAGGACAAAGATCATGT+TGG | + | chr6_2:66056618-66056637 | Msa0924280:three_prime_UTR | 35.0% | |
| AGTGGAAGAATCTGTACAAC+TGG | - | chr6_2:66053591-66053610 | None:intergenic | 40.0% | |
| GGACTTTGAACGTAGTATAG+TGG | - | chr6_2:66053888-66053907 | None:intergenic | 40.0% | |
| TGAATGGAAGGATGTAGTGA+CGG | - | chr6_2:66053931-66053950 | None:intergenic | 40.0% | |
| GTGGAAGAAGAAGAATGATG+AGG | - | chr6_2:66053969-66053988 | None:intergenic | 40.0% | |
| !! | AAGGGTTTTTGGAGAAAGAG+AGG | + | chr6_2:66054075-66054094 | Msa0924280:CDS | 40.0% |
| AGAGGAATGGTGGTTATTCT+AGG | + | chr6_2:66054093-66054112 | Msa0924280:CDS | 40.0% | |
| ATCACAATCTTGGGCTTCAT+AGG | - | chr6_2:66054200-66054219 | None:intergenic | 40.0% | |
| GTTCATGGTGATCATATCAG+TGG | - | chr6_2:66055297-66055316 | None:intergenic | 40.0% | |
| AAATTCACATACCGCAACAC+TGG | + | chr6_2:66055326-66055345 | Msa0924280:CDS | 40.0% | |
| !!! | TAAGCATGTTTTTGGTGTGG+TGG | - | chr6_2:66055709-66055728 | None:intergenic | 40.0% |
| !!! | CACTAAGCATGTTTTTGGTG+TGG | - | chr6_2:66055712-66055731 | None:intergenic | 40.0% |
| !! | TGTTTGGATTCGCTTTTGTG+AGG | - | chr6_2:66056047-66056066 | None:intergenic | 40.0% |
| TTGCACCACTTCCATACAAA+GGG | - | chr6_2:66056226-66056245 | None:intergenic | 40.0% | |
| AAGTTAAGGTTCAATGGCAC+TGG | - | chr6_2:66056281-66056300 | None:intergenic | 40.0% | |
| GATTCAATGTTCCATCACCT+TGG | + | chr6_2:66056361-66056380 | Msa0924280:CDS | 40.0% | |
| TTTCTTAGGATCCAAGGTGA+TGG | - | chr6_2:66056375-66056394 | None:intergenic | 40.0% | |
| ACCTTGGATCCTAAGAAACT+TGG | + | chr6_2:66056377-66056396 | Msa0924280:CDS | 40.0% | |
| ACCAAGTTTCTTAGGATCCA+AGG | - | chr6_2:66056381-66056400 | None:intergenic | 40.0% | |
| ! | ACTAGAGCACCAAGTTTCTT+AGG | - | chr6_2:66056389-66056408 | None:intergenic | 40.0% |
| !! | GGATTCCTTTGAGATATGGA+TGG | + | chr6_2:66056525-66056544 | Msa0924280:three_prime_UTR | 40.0% |
| ACTCAGAAGGCAAGATGATT+AGG | + | chr6_2:66056571-66056590 | Msa0924280:three_prime_UTR | 40.0% | |
| ! | GGACAAAGATCATGTTGGTT+CGG | + | chr6_2:66056623-66056642 | Msa0924280:three_prime_UTR | 40.0% |
| GTTCAAAGTCCATCACACGA+CGG | + | chr6_2:66053897-66053916 | Msa0924280:CDS | 45.0% | |
| !!! | GTTTTTTCACCGTCGTGTGA+TGG | - | chr6_2:66053909-66053928 | None:intergenic | 45.0% |
| !! | AGCAACAGGTGTTGAATGGA+AGG | - | chr6_2:66053943-66053962 | None:intergenic | 45.0% |
| !! | GTGAAGCAACAGGTGTTGAA+TGG | - | chr6_2:66053947-66053966 | None:intergenic | 45.0% |
| GAATGATGAGGTGAAGCAAC+AGG | - | chr6_2:66053957-66053976 | None:intergenic | 45.0% | |
| TTGGAGAAAGAGAGGAATGG+TGG | + | chr6_2:66054083-66054102 | Msa0924280:CDS | 45.0% | |
| GAAGCCCAAGATTGTGATCA+AGG | + | chr6_2:66054202-66054221 | Msa0924280:CDS | 45.0% | |
| GTCATGACTCATGAACAGCT+TGG | + | chr6_2:66054983-66055002 | Msa0924280:intron | 45.0% | |
| GGGTTGAAATCTGATTGGGT+TGG | + | chr6_2:66055013-66055032 | Msa0924280:CDS | 45.0% | |
| !! | CAAAGAAAGTGCCAGTGTTG+CGG | - | chr6_2:66055340-66055359 | None:intergenic | 45.0% |
| CACAGTGAGTTTACATTGGG+AGG | + | chr6_2:66055666-66055685 | Msa0924280:intron | 45.0% | |
| GAGTCATAGATTGGTGAGTG+TGG | + | chr6_2:66056181-66056200 | Msa0924280:CDS | 45.0% | |
| AAGGTCCCTTTGTATGGAAG+TGG | + | chr6_2:66056218-66056237 | Msa0924280:CDS | 45.0% | |
| CTTGCACCACTTCCATACAA+AGG | - | chr6_2:66056227-66056246 | None:intergenic | 45.0% | |
| ! | TTCAATGGCACTGGAACTGT+AGG | - | chr6_2:66056272-66056291 | None:intergenic | 45.0% |
| GATACAGCTCAGAACTCAGA+AGG | + | chr6_2:66056558-66056577 | Msa0924280:three_prime_UTR | 45.0% | |
| !! | TTAATTAATATAATCAAAAT+GGG | - | chr6_2:66056727-66056746 | None:intergenic | 5.0% |
| !! | ATTAATTAATATAATCAAAA+TGG | - | chr6_2:66056728-66056747 | None:intergenic | 5.0% |
| !! | TAGTATAGTGGACGACGTGG+TGG | - | chr6_2:66053876-66053895 | None:intergenic | 50.0% |
| !! | ACGTAGTATAGTGGACGACG+TGG | - | chr6_2:66053879-66053898 | None:intergenic | 50.0% |
| GAACATGTTACCGTCCAAGC+TGG | + | chr6_2:66055251-66055270 | Msa0924280:CDS | 50.0% | |
| TGTTACCGTCCAAGCTGGTT+CGG | + | chr6_2:66055256-66055275 | Msa0924280:CDS | 50.0% | |
| !! | AAGCTGGTTCGGATTCGACT+GGG | + | chr6_2:66055267-66055286 | Msa0924280:CDS | 50.0% |
| CGCAACACTGGCACTTTCTT+TGG | + | chr6_2:66055338-66055357 | Msa0924280:CDS | 50.0% | |
| ! | CCAAGGGTGTAGCTGAAACA+TGG | - | chr6_2:66055367-66055386 | None:intergenic | 50.0% |
| CCATGTTTCAGCTACACCCT+TGG | + | chr6_2:66055364-66055383 | Msa0924280:CDS | 50.0% | |
| ATTGGTGAGTGTGGCAGTGA+TGG | + | chr6_2:66056190-66056209 | Msa0924280:CDS | 50.0% | |
| TTGGTGAGTGTGGCAGTGAT+GGG | + | chr6_2:66056191-66056210 | Msa0924280:CDS | 50.0% | |
| GGTAGCAAGGTCCCTTTGTA+TGG | + | chr6_2:66056212-66056231 | Msa0924280:CDS | 50.0% | |
| TGCAAGCCTTAGCAGCACAA+CGG | + | chr6_2:66056241-66056260 | Msa0924280:CDS | 50.0% | |
| ! | CGACGTGGTGGTGATCTTGT+TGG | - | chr6_2:66053864-66053883 | None:intergenic | 55.0% |
| CGAATCCGAACCAGCTTGGA+CGG | - | chr6_2:66055264-66055283 | None:intergenic | 55.0% | |
| CAGTCGAATCCGAACCAGCT+TGG | - | chr6_2:66055268-66055287 | None:intergenic | 55.0% | |
| !! | CAAGCTGGTTCGGATTCGAC+TGG | + | chr6_2:66055266-66055285 | Msa0924280:CDS | 55.0% |
| !! | AGCTGGTTCGGATTCGACTG+GGG | + | chr6_2:66055268-66055287 | Msa0924280:CDS | 55.0% |
| !! | TGTGGCAGTGATGGGTAGCA+AGG | + | chr6_2:66056199-66056218 | Msa0924280:CDS | 55.0% |
| GCAAGCCTTAGCAGCACAAC+GGG | + | chr6_2:66056242-66056261 | Msa0924280:CDS | 55.0% | |
| ! | GCATACCCGTTGTGCTGCTA+AGG | - | chr6_2:66056250-66056269 | None:intergenic | 55.0% |
| ! | TGGTTCGGATTCGACTGGGG+TGG | + | chr6_2:66055271-66055290 | Msa0924280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 66053572 | 66056757 | 66053572 | ID=Msa0924280;Name=Msa0924280 |
| chr6_2 | mRNA | 66053572 | 66056757 | 66053572 | ID=Msa0924280-mRNA-1;Parent=Msa0924280;Name=Msa0924280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=232|0.33|0.75|0.75|1|1|4|318|315 |
| chr6_2 | exon | 66053572 | 66054223 | 66053572 | ID=Msa0924280-mRNA-1:exon:10424;Parent=Msa0924280-mRNA-1 |
| chr6_2 | exon | 66055001 | 66055057 | 66055001 | ID=Msa0924280-mRNA-1:exon:10425;Parent=Msa0924280-mRNA-1 |
| chr6_2 | exon | 66055239 | 66055424 | 66055239 | ID=Msa0924280-mRNA-1:exon:10426;Parent=Msa0924280-mRNA-1 |
| chr6_2 | exon | 66056155 | 66056757 | 66056155 | ID=Msa0924280-mRNA-1:exon:10427;Parent=Msa0924280-mRNA-1 |
| chr6_2 | five_prime_UTR | 66053572 | 66053803 | 66053572 | ID=Msa0924280-mRNA-1:five_prime_utr;Parent=Msa0924280-mRNA-1 |
| chr6_2 | CDS | 66053804 | 66054223 | 66053804 | ID=Msa0924280-mRNA-1:cds;Parent=Msa0924280-mRNA-1 |
| chr6_2 | CDS | 66055001 | 66055057 | 66055001 | ID=Msa0924280-mRNA-1:cds;Parent=Msa0924280-mRNA-1 |
| chr6_2 | CDS | 66055239 | 66055424 | 66055239 | ID=Msa0924280-mRNA-1:cds;Parent=Msa0924280-mRNA-1 |
| chr6_2 | CDS | 66056155 | 66056439 | 66056155 | ID=Msa0924280-mRNA-1:cds;Parent=Msa0924280-mRNA-1 |
| chr6_2 | three_prime_UTR | 66056440 | 66056757 | 66056440 | ID=Msa0924280-mRNA-1:three_prime_utr;Parent=Msa0924280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
