AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191890 MtrunA17_Chr2g0281781 96.184 891 33 1 1 891 1 890 0.0 1767
Msa0191890 MtrunA17_Chr2g0318031 35.682 894 440 30 1 853 1 800 6.35e-120 390
Msa0191890 MtrunA17_Chr1g0187491 38.809 554 248 25 1 509 1 508 7.41e-80 282
Msa0191890 MtrunA17_Chr1g0166471 33.022 536 273 18 1 503 1 483 1.22e-60 224
Msa0191890 MtrunA17_Chr8g0344661 33.784 222 126 4 1 220 1 203 1.10e-31 134
Msa0191890 MtrunA17_Chr3g0128441 26.941 219 123 3 7 219 11 198 8.15e-15 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191890 AT1G61100.1 38.655 877 416 32 1 848 1 784 1.24e-146 454
Msa0191890 AT1G61100.2 38.655 877 415 32 1 848 1 783 1.52e-146 453
Msa0191890 AT4G27430.1 37.080 863 446 30 1 846 1 783 1.10e-124 402
Msa0191890 AT4G27430.2 37.080 863 446 30 1 846 1 783 1.10e-124 402
Msa0191890 AT5G43310.5 35.448 536 235 19 1 507 1 454 1.61e-70 253
Msa0191890 AT5G43310.4 35.448 536 235 19 1 507 1 454 2.29e-70 254
Msa0191890 AT5G43310.3 35.448 536 235 19 1 507 1 454 2.29e-70 254
Msa0191890 AT5G43310.2 35.448 536 235 19 1 507 1 454 4.47e-70 253
Msa0191890 AT3G14172.1 37.037 216 113 3 7 220 7 201 2.49e-34 142
Msa0191890 AT5G43310.1 31.956 363 151 16 159 507 231 511 9.42e-33 137
Msa0191890 AT5G43310.1 60.000 105 41 1 1 104 1 105 8.10e-30 128
Msa0191890 AT3G14172.2 35.047 214 112 3 7 220 7 193 1.06e-28 124
Msa0191890 AT1G17360.1 31.839 223 115 5 1 220 1 189 2.28e-27 120
Msa0191890 AT1G72410.2 31.839 223 122 5 1 220 1 196 1.10e-24 111
Msa0191890 AT1G72410.1 31.839 223 122 5 1 220 1 196 1.17e-24 111
Msa0191890 AT3G14172.3 32.370 173 94 3 50 220 12 163 1.05e-17 89.4

Find 167 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATCCAACACTGCTTTC+TGG 0.103763 2_1:+7615988 Msa0191890:CDS
GGCTTTCTGTTTCTAGAAAT+TGG 0.169361 2_1:-7619587 None:intergenic
CATTTGGAGCATCGCGTTTA+AGG 0.193408 2_1:+7617029 Msa0191890:CDS
GTTTATTGTTGATAACAATT+TGG 0.222809 2_1:+7619085 Msa0191890:CDS
AAAAGCATGCAGATGATCTT+TGG 0.249753 2_1:+7617689 Msa0191890:CDS
AGCTATTATTCTTGTTGTTC+TGG 0.250738 2_1:-7617810 None:intergenic
CTTTCCCTGATCTTTGTAAC+TGG 0.257701 2_1:-7618942 None:intergenic
GCATTAATTTCAAGGATTTA+TGG 0.262511 2_1:+7617662 Msa0191890:CDS
TCCGCAATTTCACGATTCTT+TGG 0.266625 2_1:-7618840 None:intergenic
TAACCTCTCAAAGGTGGATT+TGG 0.274750 2_1:-7616015 None:intergenic
GATTTCGCTGCAACGCCTTT+TGG 0.284161 2_1:+7616898 Msa0191890:CDS
TTTAACAGGAAGATGAAATT+AGG 0.285960 2_1:+7619776 Msa0191890:intron
GATTCCAGTGATCCTGATTC+AGG 0.296973 2_1:+7618291 Msa0191890:CDS
ATCATTTGATTTATTGTGTT+TGG 0.297241 2_1:-7618601 None:intergenic
CAAATACTATAGGCACATTT+GGG 0.300601 2_1:-7619130 None:intergenic
ATCACCAACCTTCTGTTTGA+TGG 0.301643 2_1:-7618514 None:intergenic
TCAAATACTATAGGCACATT+TGG 0.314149 2_1:-7619131 None:intergenic
ATCTTCTGATCCTCTTCCCT+TGG 0.314858 2_1:-7619060 None:intergenic
CAAATTGACTTTCAATCTGC+TGG 0.325945 2_1:-7616312 None:intergenic
CTAAAGGTGGATACTCTATT+AGG 0.346591 2_1:+7615958 Msa0191890:CDS
TCAATAGAAGCTCTTCTATC+AGG 0.350159 2_1:-7619461 None:intergenic
GATGCAATCGATTGATGTTC+AGG 0.360802 2_1:+7618734 Msa0191890:CDS
GATGATTCCTTCATGATTCA+AGG 0.363422 2_1:+7619209 Msa0191890:CDS
GTTCGTGAGAAAATAGCTTC+TGG 0.373823 2_1:+7615885 Msa0191890:CDS
TATTCTTGTTGTTCTGGTCA+TGG 0.378692 2_1:-7617804 None:intergenic
CTGTTTCTAGAAATTGGTTC+AGG 0.382494 2_1:-7619581 None:intergenic
ACTTCATTGAAATCCATGTT+TGG 0.387757 2_1:-7618816 None:intergenic
TCAACTACATCACTCCAAAA+AGG 0.388918 2_1:+7618421 Msa0191890:CDS
TCTTCTGATCCTCTTCCCTT+GGG 0.389676 2_1:-7619059 None:intergenic
AGATGAAATTAGGAAGCAAT+TGG 0.394685 2_1:+7619786 Msa0191890:CDS
ATCGCACATGGAGTGTGAAC+TGG 0.394964 2_1:-7615512 None:intergenic
TGGATCATCAGGAATTATAC+TGG 0.395796 2_1:+7617765 Msa0191890:CDS
AAAACCATACAGAGGTCATT+TGG 0.405408 2_1:-7619362 None:intergenic
AGCATAATCAAGAATGGTCT+TGG 0.405937 2_1:-7615684 None:intergenic
AAAGCATGCAGATGATCTTT+GGG 0.406887 2_1:+7617690 Msa0191890:CDS
TACTTATATCTGTCTTCCAT+TGG 0.407496 2_1:-7619262 None:intergenic
TCAGATTCACTCCCTGAATC+AGG 0.407557 2_1:-7618303 None:intergenic
CAGTTAAATGATGCACTTGA+AGG 0.410535 2_1:+7616736 Msa0191890:intron
GTCGATGTCAGTTGCAATCC+CGG 0.410829 2_1:+7616348 Msa0191890:CDS
ATTCTTTGAAGGATGATAAG+AGG 0.416935 2_1:+7618352 Msa0191890:CDS
GGAAGCTTGCATTAATTTCA+AGG 0.419305 2_1:+7617654 Msa0191890:CDS
AGACTCAAACAATTCTTTGA+AGG 0.423072 2_1:+7618341 Msa0191890:CDS
TTTGAACCATAGGCTTTCTT+GGG 0.426257 2_1:-7619616 None:intergenic
ATTCTTGTTGTTCTGGTCAT+GGG 0.427532 2_1:-7617803 None:intergenic
TGTTAGCACACCTGCAGTAC+TGG 0.428316 2_1:+7616261 Msa0191890:CDS
TAGGAAGCAATTGGAAGAAA+AGG 0.431957 2_1:+7619795 Msa0191890:CDS
TATGAAGGCATTTGCTGACT+AGG 0.433103 2_1:-7618132 None:intergenic
ATATATGGCGGTACGTTGTA+AGG 0.434933 2_1:-7618093 None:intergenic
GTGTCCCAGTTACAAAGATC+AGG 0.436622 2_1:+7618937 Msa0191890:CDS
TATACACGTAGTCTTGTTGC+TGG 0.437080 2_1:+7616962 Msa0191890:CDS
AAACAGAAACAGTTCTGTTA+AGG 0.437731 2_1:+7619951 Msa0191890:CDS
GGAAACTTGCCGCACACAAA+TGG 0.438828 2_1:+7616600 Msa0191890:intron
AAGATAGATGCGGCGGAGAC+TGG 0.439609 2_1:+7618693 Msa0191890:CDS
TGTGTCGGTTTCTACCTTGT+TGG 0.440856 2_1:-7619306 None:intergenic
GAAAGAAACCTTGTTCTAGT+TGG 0.443676 2_1:-7615722 None:intergenic
TTCGTGAGAAAATAGCTTCT+GGG 0.443859 2_1:+7615886 Msa0191890:CDS
ATGGAAGACAGATATAAGTA+TGG 0.447475 2_1:+7619265 Msa0191890:CDS
TTCCAAACCATACCTTCATC+CGG 0.449240 2_1:-7616367 None:intergenic
GCTGAAAGAACTGCATCTTC+CGG 0.450013 2_1:+7619841 Msa0191890:CDS
TCTACAGACAGTATTCCTTC+TGG 0.454903 2_1:+7617832 Msa0191890:CDS
GGTGTTGGTCGAACCGTGCC+TGG 0.456883 2_1:+7619862 Msa0191890:CDS
AGGGAAGAGGATCAGAAGAT+TGG 0.458212 2_1:+7619063 Msa0191890:CDS
GTTAAAGATGAGATCTCTAA+AGG 0.458836 2_1:+7615942 Msa0191890:CDS
AAGAATGGTCTTGGAATCCA+TGG 0.465531 2_1:-7615675 None:intergenic
ACTTATATCTGTCTTCCATT+GGG 0.465897 2_1:-7619261 None:intergenic
CATCTATCTTCAAAAGGCTC+TGG 0.470474 2_1:-7618680 None:intergenic
CTATCACCATCAAATACTAT+AGG 0.472793 2_1:-7619140 None:intergenic
TCAGCAGCATAAGTATTTAA+CGG 0.473822 2_1:-7619026 None:intergenic
TAGGCACATTTGGGGAATCA+TGG 0.474102 2_1:-7619121 None:intergenic
GCGGCGGAGACTGGTATTGA+TGG 0.474369 2_1:+7618702 Msa0191890:CDS
ATTGTGACTCAAAGAGATGA+AGG 0.481610 2_1:+7618873 Msa0191890:CDS
AATGTGCCTATAGTATTTGA+TGG 0.482716 2_1:+7619134 Msa0191890:CDS
GGAGGATATCCTTGGTATGA+AGG 0.485665 2_1:-7618147 None:intergenic
TCATTGCAGAAGGTCCATAA+AGG 0.485905 2_1:+7618546 Msa0191890:CDS
ATGAAGGAATCATCAATGAT+AGG 0.486228 2_1:-7619200 None:intergenic
AAATGAAAGAGGATCGAAGC+TGG 0.490065 2_1:+7618896 Msa0191890:CDS
ATAGGCTTTCTTGGGAGAGA+TGG 0.490460 2_1:-7619608 None:intergenic
GAAGGTAAGGAGGATATCCT+TGG 0.491685 2_1:-7618155 None:intergenic
ACCTTCAAAATAATATGCAT+TGG 0.495082 2_1:+7618172 Msa0191890:CDS
ACTCCCTGAATCAGGATCAC+TGG 0.498072 2_1:-7618295 None:intergenic
CCGCCGCATCTATCTTCAAA+AGG 0.498419 2_1:-7618686 None:intergenic
ATCTCTCCCAAGAAAGCCTA+TGG 0.499073 2_1:+7619610 Msa0191890:CDS
CTTCATCAATCTTCTACCCA+TGG 0.499203 2_1:+7615658 Msa0191890:exon
TTTGCAACGCGATTCAGGAT+TGG 0.499793 2_1:+7619382 Msa0191890:CDS
TCAAAAGAGCCAAAGGGAAA+AGG 0.504709 2_1:+7619634 Msa0191890:CDS
GAATGCATTATCAAAGATAG+AGG 0.504852 2_1:+7619337 Msa0191890:CDS
AAACAGAGCATAATCAAGAA+TGG 0.522503 2_1:-7615690 None:intergenic
AGGAGAAATGGAAATGAGAG+TGG 0.523974 2_1:+7618441 Msa0191890:CDS
TATGCATTGGTCTTCTAACA+TGG 0.529226 2_1:+7618185 Msa0191890:CDS
TGAAAATAACCTCTCAAAGG+TGG 0.529543 2_1:-7616021 None:intergenic
AAAGTCAATTTCATAGTCCA+TGG 0.536400 2_1:-7619426 None:intergenic
TGAGTGATGTGTAGTGATAG+TGG 0.538751 2_1:-7615595 None:intergenic
AGAACTGCATCTTCCGGTGT+TGG 0.542823 2_1:+7619847 Msa0191890:CDS
GGAGAACCAGAAAGCAGTGT+TGG 0.543361 2_1:-7615994 None:intergenic
TCATCACAACCCAAGGGAAG+AGG 0.543533 2_1:+7619050 Msa0191890:CDS
ATTCCAGTGATCCTGATTCA+GGG 0.543913 2_1:+7618292 Msa0191890:CDS
TAAGGCCATGGCATATGCAT+TGG 0.545284 2_1:-7618075 None:intergenic
TTTCCCTGATCTTTGTAACT+GGG 0.548685 2_1:-7618941 None:intergenic
AACCAGAAAGCAGTGTTGGA+TGG 0.552261 2_1:-7615990 None:intergenic
TCGCACATGGAGTGTGAACT+GGG 0.553572 2_1:-7615511 None:intergenic
TGCTGATTCATCACAACCCA+AGG 0.554416 2_1:+7619043 Msa0191890:CDS
TGGATTCTGTTGAAGCCTCA+AGG 0.556644 2_1:+7619402 Msa0191890:CDS
TTCATAGTCCATGGTCCTTG+AGG 0.556923 2_1:-7619417 None:intergenic
TCCAAACCATACCTTCATCC+GGG 0.558364 2_1:-7616366 None:intergenic
AACAGTTCTGTTAAGGTCAG+AGG 0.558395 2_1:+7619958 Msa0191890:CDS
GGAGCCAAATGACCTCTGTA+TGG 0.559604 2_1:+7619358 Msa0191890:CDS
TCAGTTGCAATCCCGGATGA+AGG 0.560335 2_1:+7616355 Msa0191890:CDS
GAGAAATCTCATCATAGGAA+AGG 0.561136 2_1:+7618240 Msa0191890:CDS
GCTGAGGAAGATGCATCTGA+TGG 0.561920 2_1:+7618627 Msa0191890:CDS
ATAATCTTTCTGATTCCCAA+TGG 0.561944 2_1:+7619246 Msa0191890:CDS
GGCGGTACGTTGTAAGGCCA+TGG 0.562859 2_1:-7618087 None:intergenic
AGCACTACTTCGAAAAGAGC+AGG 0.563412 2_1:+7616931 Msa0191890:CDS
AGAGATGAAGGAAATGAAAG+AGG 0.564503 2_1:+7618885 Msa0191890:CDS
ACAAACCTCTCCAGTACTGC+AGG 0.565325 2_1:-7616271 None:intergenic
CTTGCGTTTCCATTTGTGTG+CGG 0.566813 2_1:-7616609 None:intergenic
CTTGTTGTTCTGGTCATGGG+CGG 0.570173 2_1:-7617800 None:intergenic
TGCTAGTTCTGCTCCAAACA+TGG 0.572416 2_1:+7618803 Msa0191890:CDS
AAGAAAGAAACAAAGACAGC+AGG 0.573481 2_1:-7615545 None:intergenic
AAACTGACCTTGAATCATGA+AGG 0.574019 2_1:-7619216 None:intergenic
TTTGCTATTTGATCTTTACC+AGG 0.575386 2_1:-7619880 None:intergenic
TCCAAAGAATCGTGAAATTG+CGG 0.580291 2_1:+7618839 Msa0191890:CDS
AGGAAGATGCATCTGATGGA+GGG 0.584311 2_1:+7618631 Msa0191890:CDS
ACAAAGATCAGGGAAAGTAT+TGG 0.586644 2_1:+7618948 Msa0191890:CDS
TATTGAAAATAACCTCTCAA+AGG 0.587430 2_1:-7616024 None:intergenic
TAAATCAAATGATGCTGCTG+AGG 0.589260 2_1:+7618611 Msa0191890:CDS
CTATGGTTCAAAAGAGCCAA+AGG 0.589709 2_1:+7619627 Msa0191890:CDS
TATTTGATCTTTACCAGGCA+CGG 0.589815 2_1:-7619875 None:intergenic
GAAACCATCAAACAGAAGGT+TGG 0.595462 2_1:+7618510 Msa0191890:CDS
TGAAGAAACCATCAAACAGA+AGG 0.599349 2_1:+7618506 Msa0191890:CDS
TGTTGAAGCCTCAAGGACCA+TGG 0.604282 2_1:+7619409 Msa0191890:CDS
TCTCCAAATCCACCTTTGAG+AGG 0.606329 2_1:+7616012 Msa0191890:CDS
GTGCTATTCGAGACTCCAAA+AGG 0.607180 2_1:-7616913 None:intergenic
AGGAGTTGACACTAAAGAAG+AGG 0.608965 2_1:+7616756 Msa0191890:CDS
CAGCAAATGCCTTCATACCA+AGG 0.609523 2_1:+7618138 Msa0191890:CDS
TATGGTTCAAAAGAGCCAAA+GGG 0.610400 2_1:+7619628 Msa0191890:CDS
CAGAAAGCAGTGTTGGATGG+AGG 0.610749 2_1:-7615987 None:intergenic
AACTCACACCAACTAGAACA+AGG 0.613594 2_1:+7615714 Msa0191890:CDS
GAGGTTAAGTGATTCTGCAA+AGG 0.615197 2_1:+7616632 Msa0191890:CDS
TAGGCCATGGTGAATCTACA+AGG 0.615491 2_1:+7620051 Msa0191890:three_prime_UTR
TGCACTTGAATCATTGCAGA+AGG 0.618725 2_1:+7618536 Msa0191890:CDS
GCAATTGGAAGAAAAGGCGA+TGG 0.619942 2_1:+7619801 Msa0191890:CDS
TTTGTGTTGAGAAACTCTGA+AGG 0.622804 2_1:+7618765 Msa0191890:CDS
ACTTCGAAAAGAGCAGGCAA+TGG 0.623572 2_1:+7616937 Msa0191890:CDS
ATGCATTGGTCTTCTAACAT+GGG 0.624478 2_1:+7618186 Msa0191890:CDS
GAGGAAGATGCATCTGATGG+AGG 0.626415 2_1:+7618630 Msa0191890:CDS
GATCCAGAAAATGAGAGTGC+TGG 0.627508 2_1:-7617748 None:intergenic
GCACACCTGCAGTACTGGAG+AGG 0.629725 2_1:+7616266 Msa0191890:CDS
TGTCCCAGTTACAAAGATCA+GGG 0.630317 2_1:+7618938 Msa0191890:CDS
ATATGCCAATGCATATGCCA+TGG 0.630372 2_1:+7618070 Msa0191890:CDS
AAAAGGCGATGGAACGACAG+AGG 0.633665 2_1:+7619812 Msa0191890:CDS
AGATGTGAACTTATCGCACA+TGG 0.643303 2_1:+7618038 Msa0191890:intron
TGAAGATTATACATATATGG+CGG 0.644615 2_1:-7618105 None:intergenic
GGAATATGAAGAATCGCACA+TGG 0.648565 2_1:-7615524 None:intergenic
AGGCACGGTTCGACCAACAC+CGG 0.654070 2_1:-7619860 None:intergenic
CGCACACAAATGGAAACGCA+AGG 0.655355 2_1:+7616610 Msa0191890:CDS
AAAGATGAGATCTCTAAAGG+TGG 0.655907 2_1:+7615945 Msa0191890:CDS
TTTACCTTGTAGATTCACCA+TGG 0.665569 2_1:-7620055 None:intergenic
AAATACTATAGGCACATTTG+GGG 0.667223 2_1:-7619129 None:intergenic
AGAATGGTCTTGGAATCCAT+GGG 0.669793 2_1:-7615674 None:intergenic
AATTTGAGATGAGAAATGAA+AGG 0.677579 2_1:-7615918 None:intergenic
TAGTGTCATTCAGTTCAATG+TGG 0.678687 2_1:+7620004 Msa0191890:three_prime_UTR
AGATCTAACATCTTCCAACA+AGG 0.687176 2_1:+7619292 Msa0191890:CDS
CGCGTTGCAAAACCATACAG+AGG 0.690263 2_1:-7619370 None:intergenic
AGATTGATGAAGAACAACGT+TGG 0.694386 2_1:-7615647 None:intergenic
GCTGATTCATCACAACCCAA+GGG 0.696947 2_1:+7619044 Msa0191890:CDS
CCAGAAAATGAGAGTGCTGG+TGG 0.704940 2_1:-7617745 None:intergenic
ACACAAATGGAAACGCAAGG+AGG 0.763676 2_1:+7616613 Msa0191890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATAAATAAACTTTT+AGG + chr2_1:7620132-7620151 Msa0191890:three_prime_UTR 10.0%
!! ATAAGAGAATATAACAAAAT+GGG - chr2_1:7615754-7615773 None:intergenic 15.0%
!! AATAAGAGAATATAACAAAA+TGG - chr2_1:7615755-7615774 None:intergenic 15.0%
!!! TTTTTCACAATTTACTTATT+GGG + chr2_1:7615803-7615822 Msa0191890:intron 15.0%
!!! ACTTTTTTGATTTAATCTTT+TGG + chr2_1:7616053-7616072 Msa0191890:intron 15.0%
!!! AATTGTGTTTTTTATGTTAA+AGG + chr2_1:7617153-7617172 Msa0191890:intron 15.0%
!!! TTTTGAAGATTATACATATA+TGG - chr2_1:7618111-7618130 None:intergenic 15.0%
!!! GTATTGTGAATTTTTTATTA+TGG + chr2_1:7619656-7619675 Msa0191890:intron 15.0%
!!! CTTTTTCACAATTTACTTAT+TGG + chr2_1:7615802-7615821 Msa0191890:intron 20.0%
!! CAATCATATAATTGAATCAA+TGG - chr2_1:7616129-7616148 None:intergenic 20.0%
!!! GACTTATTTAAGTTGTTTTA+TGG + chr2_1:7616148-7616167 Msa0191890:intron 20.0%
!!! ATGCAAAATAAATGTGTTTT+TGG + chr2_1:7616185-7616204 Msa0191890:intron 20.0%
!!! TGCAAAATAAATGTGTTTTT+GGG + chr2_1:7616186-7616205 Msa0191890:intron 20.0%
!!! TTTTTTTTGATAGATTTGTG+CGG + chr2_1:7616236-7616255 Msa0191890:intron 20.0%
!!! ACATAGATTCATTGATTTAT+AGG - chr2_1:7616493-7616512 None:intergenic 20.0%
!! AATAATCAATAGAGATCATT+AGG - chr2_1:7616688-7616707 None:intergenic 20.0%
!! TGAATTCAATATATGTTGAT+TGG + chr2_1:7617554-7617573 Msa0191890:intron 20.0%
!! TTGAAACTAATTCTAAATCT+TGG + chr2_1:7617615-7617634 Msa0191890:intron 20.0%
!! TTTGTAGAAAACAAAAAAGA+CGG + chr2_1:7617868-7617887 Msa0191890:CDS 20.0%
!! TACAATTAAGGTAAAAGAAA+AGG - chr2_1:7617913-7617932 None:intergenic 20.0%
!! AAAAAATCAAAGATTTGACT+TGG - chr2_1:7617972-7617991 None:intergenic 20.0%
!!! ATCATTTGATTTATTGTGTT+TGG - chr2_1:7618604-7618623 None:intergenic 20.0%
!!! GTTTATTGTTGATAACAATT+TGG + chr2_1:7619085-7619104 Msa0191890:CDS 20.0%
!!! TCTATTTTGAGTAACTATAT+AGG - chr2_1:7620178-7620197 None:intergenic 20.0%
!! AATTTGAGATGAGAAATGAA+AGG - chr2_1:7615921-7615940 None:intergenic 25.0%
! TATTGAAAATAACCTCTCAA+AGG - chr2_1:7616027-7616046 None:intergenic 25.0%
!! TGTTTCTGTATCAATTGATT+AGG + chr2_1:7616416-7616435 Msa0191890:intron 25.0%
! TGTATCAATTGATTAGGTTT+AGG + chr2_1:7616422-7616441 Msa0191890:intron 25.0%
!!! AATTAACAAGTGTTGTTTCT+AGG - chr2_1:7616463-7616482 None:intergenic 25.0%
!! TAAATTTTCCATTGTGTATC+AGG + chr2_1:7616579-7616598 Msa0191890:intron 25.0%
! TAATGAACTAGTCAAACAAA+GGG - chr2_1:7616839-7616858 None:intergenic 25.0%
!! GTATATTTTGCAAATGCATT+TGG + chr2_1:7617013-7617032 Msa0191890:CDS 25.0%
! CTTATATGGATACTGTAAAT+TGG + chr2_1:7617082-7617101 Msa0191890:intron 25.0%
!! CTTTTATGTCTGAAAAGAAA+GGG - chr2_1:7617250-7617269 None:intergenic 25.0%
!! ACTTTTATGTCTGAAAAGAA+AGG - chr2_1:7617251-7617270 None:intergenic 25.0%
! AATTTCACAATCTACAAAGT+AGG - chr2_1:7617290-7617309 None:intergenic 25.0%
! TGTGAAATTTCACTTATCTA+AGG + chr2_1:7617301-7617320 Msa0191890:intron 25.0%
! GTGAAATTTCACTTATCTAA+GGG + chr2_1:7617302-7617321 Msa0191890:intron 25.0%
! TGAAATTTCACTTATCTAAG+GGG + chr2_1:7617303-7617322 Msa0191890:intron 25.0%
! AAATTTCACCCTAATCTAAT+AGG - chr2_1:7617486-7617505 None:intergenic 25.0%
!! ATTCAATATATGTTGATTGG+TGG + chr2_1:7617557-7617576 Msa0191890:intron 25.0%
! GCATTAATTTCAAGGATTTA+TGG + chr2_1:7617662-7617681 Msa0191890:CDS 25.0%
! CAGACTTCATAATACAATTA+AGG - chr2_1:7617925-7617944 None:intergenic 25.0%
!! TTTTTATAGATTGCACACAA+TGG + chr2_1:7617987-7618006 Msa0191890:intron 25.0%
! TGAAGATTATACATATATGG+CGG - chr2_1:7618108-7618127 None:intergenic 25.0%
!!! ATATTATTTTGAAGGTAAGG+AGG - chr2_1:7618168-7618187 None:intergenic 25.0%
!!! TGCATATTATTTTGAAGGTA+AGG - chr2_1:7618171-7618190 None:intergenic 25.0%
! ACCTTCAAAATAATATGCAT+TGG + chr2_1:7618172-7618191 Msa0191890:CDS 25.0%
!!! ACCAATGCATATTATTTTGA+AGG - chr2_1:7618176-7618195 None:intergenic 25.0%
! AAAAAGAGAAATCTCATCAT+AGG + chr2_1:7618235-7618254 Msa0191890:CDS 25.0%
! ATAAGAGGAAAAAAAACAGA+AGG + chr2_1:7618367-7618386 Msa0191890:CDS 25.0%
! TTTAACAGGAAGATGAAATT+AGG + chr2_1:7619776-7619795 Msa0191890:intron 25.0%
! AGGAATTTAGAAAAACTTGT+CGG + chr2_1:7619978-7619997 Msa0191890:exon 25.0%
! TCATAAAAACAAAGCAACAA+AGG - chr2_1:7620275-7620294 None:intergenic 25.0%
AAACAGAGCATAATCAAGAA+TGG - chr2_1:7615693-7615712 None:intergenic 30.0%
! ATTTTGCAGATTTGAGCTTT+TGG + chr2_1:7615848-7615867 Msa0191890:intron 30.0%
!!! TTTGAGCTTTTGGTGTTTAA+TGG + chr2_1:7615858-7615877 Msa0191890:CDS 30.0%
GTTAAAGATGAGATCTCTAA+AGG + chr2_1:7615942-7615961 Msa0191890:CDS 30.0%
TAGACTGACATATCATGATT+AGG - chr2_1:7616540-7616559 None:intergenic 30.0%
CTAATGAACTAGTCAAACAA+AGG - chr2_1:7616840-7616859 None:intergenic 30.0%
! CTTTGTTTGACTAGTTCATT+AGG + chr2_1:7616838-7616857 Msa0191890:intron 30.0%
ATTCAATTGCTGCAATGTTA+AGG + chr2_1:7616876-7616895 Msa0191890:intron 30.0%
ACAACCTACAAGTTCTTATA+TGG + chr2_1:7617068-7617087 Msa0191890:intron 30.0%
GTATCCATATAAGAACTTGT+AGG - chr2_1:7617075-7617094 None:intergenic 30.0%
AGAGAACTAACATCAAAAGT+TGG - chr2_1:7617342-7617361 None:intergenic 30.0%
TACTAAAAATTCGCACGAAA+AGG - chr2_1:7617396-7617415 None:intergenic 30.0%
TTAGTTTCAAACTCTACTGA+AGG - chr2_1:7617605-7617624 None:intergenic 30.0%
TCTTGGTATTCAATGTATGT+AGG + chr2_1:7617632-7617651 Msa0191890:intron 30.0%
CTTGGTATTCAATGTATGTA+GGG + chr2_1:7617633-7617652 Msa0191890:intron 30.0%
!! AGCTATTATTCTTGTTGTTC+TGG - chr2_1:7617813-7617832 None:intergenic 30.0%
AGACTCAAACAATTCTTTGA+AGG + chr2_1:7618341-7618360 Msa0191890:CDS 30.0%
! ATTCTTTGAAGGATGATAAG+AGG + chr2_1:7618352-7618371 Msa0191890:CDS 30.0%
AAAAACAGAAGGAAATCATC+TGG + chr2_1:7618378-7618397 Msa0191890:CDS 30.0%
! TCATTTCCATTTCTCCTTTT+TGG - chr2_1:7618438-7618457 None:intergenic 30.0%
ACTTCATTGAAATCCATGTT+TGG - chr2_1:7618819-7618838 None:intergenic 30.0%
! GGATCATCAAGTTCAATTTT+TGG - chr2_1:7619008-7619027 None:intergenic 30.0%
TCAGCAGCATAAGTATTTAA+CGG - chr2_1:7619029-7619048 None:intergenic 30.0%
AAATACTATAGGCACATTTG+GGG - chr2_1:7619132-7619151 None:intergenic 30.0%
CAAATACTATAGGCACATTT+GGG - chr2_1:7619133-7619152 None:intergenic 30.0%
TCAAATACTATAGGCACATT+TGG - chr2_1:7619134-7619153 None:intergenic 30.0%
AATGTGCCTATAGTATTTGA+TGG + chr2_1:7619134-7619153 Msa0191890:CDS 30.0%
CTATCACCATCAAATACTAT+AGG - chr2_1:7619143-7619162 None:intergenic 30.0%
ATGAAGGAATCATCAATGAT+AGG - chr2_1:7619203-7619222 None:intergenic 30.0%
ATAATCTTTCTGATTCCCAA+TGG + chr2_1:7619246-7619265 Msa0191890:CDS 30.0%
ACTTATATCTGTCTTCCATT+GGG - chr2_1:7619264-7619283 None:intergenic 30.0%
TACTTATATCTGTCTTCCAT+TGG - chr2_1:7619265-7619284 None:intergenic 30.0%
ATGGAAGACAGATATAAGTA+TGG + chr2_1:7619265-7619284 Msa0191890:CDS 30.0%
! TGCATTCTTTTCTTTTGTGT+CGG - chr2_1:7619324-7619343 None:intergenic 30.0%
GAATGCATTATCAAAGATAG+AGG + chr2_1:7619337-7619356 Msa0191890:CDS 30.0%
AAAGTCAATTTCATAGTCCA+TGG - chr2_1:7619429-7619448 None:intergenic 30.0%
!! ATTTATGTGTGCTGTTTAAC+AGG + chr2_1:7619762-7619781 Msa0191890:intron 30.0%
AGATGAAATTAGGAAGCAAT+TGG + chr2_1:7619786-7619805 Msa0191890:CDS 30.0%
!! TTTGCTATTTGATCTTTACC+AGG - chr2_1:7619883-7619902 None:intergenic 30.0%
AAACAGAAACAGTTCTGTTA+AGG + chr2_1:7619951-7619970 Msa0191890:CDS 30.0%
! ATGCAGCTTTTATAAGGTAT+AGG + chr2_1:7620032-7620051 Msa0191890:three_prime_UTR 30.0%
AAGAAAGAAACAAAGACAGC+AGG - chr2_1:7615548-7615567 None:intergenic 35.0%
AGATTGATGAAGAACAACGT+TGG - chr2_1:7615650-7615669 None:intergenic 35.0%
AGCATAATCAAGAATGGTCT+TGG - chr2_1:7615687-7615706 None:intergenic 35.0%
GAAAGAAACCTTGTTCTAGT+TGG - chr2_1:7615725-7615744 None:intergenic 35.0%
TTCGTGAGAAAATAGCTTCT+GGG + chr2_1:7615886-7615905 Msa0191890:CDS 35.0%
! AAAGATGAGATCTCTAAAGG+TGG + chr2_1:7615945-7615964 Msa0191890:CDS 35.0%
CTAAAGGTGGATACTCTATT+AGG + chr2_1:7615958-7615977 Msa0191890:CDS 35.0%
TGAAAATAACCTCTCAAAGG+TGG - chr2_1:7616024-7616043 None:intergenic 35.0%
!! TCTGCTGGATTTCTTTTTCA+AGG - chr2_1:7616300-7616319 None:intergenic 35.0%
! CAAATTGACTTTCAATCTGC+TGG - chr2_1:7616315-7616334 None:intergenic 35.0%
GACATATCATGATTAGGTGA+CGG - chr2_1:7616534-7616553 None:intergenic 35.0%
CAGTTAAATGATGCACTTGA+AGG + chr2_1:7616736-7616755 Msa0191890:intron 35.0%
TTGCAGCAATTGAATGTGTT+AGG - chr2_1:7616871-7616890 None:intergenic 35.0%
GCCTCAGTTCTTACTAAATA+TGG + chr2_1:7617111-7617130 Msa0191890:intron 35.0%
GCCATATTTAGTAAGAACTG+AGG - chr2_1:7617115-7617134 None:intergenic 35.0%
!! AAAAAGTGCTCTCTAGAAAC+TGG - chr2_1:7617211-7617230 None:intergenic 35.0%
ATGTCTGAAAAGAAAGGGAA+AGG - chr2_1:7617245-7617264 None:intergenic 35.0%
TTTCACTTATCTAAGGGGAT+TGG + chr2_1:7617308-7617327 Msa0191890:intron 35.0%
ATGTGTGTGCCTATTAGATT+AGG + chr2_1:7617474-7617493 Msa0191890:intron 35.0%
TGTGTGTGCCTATTAGATTA+GGG + chr2_1:7617475-7617494 Msa0191890:intron 35.0%
GGAAGCTTGCATTAATTTCA+AGG + chr2_1:7617654-7617673 Msa0191890:CDS 35.0%
! AAAAGCATGCAGATGATCTT+TGG + chr2_1:7617689-7617708 Msa0191890:CDS 35.0%
AAAGCATGCAGATGATCTTT+GGG + chr2_1:7617690-7617709 Msa0191890:CDS 35.0%
TGGATCATCAGGAATTATAC+TGG + chr2_1:7617765-7617784 Msa0191890:CDS 35.0%
!! ATTCTTGTTGTTCTGGTCAT+GGG - chr2_1:7617806-7617825 None:intergenic 35.0%
!! TATTCTTGTTGTTCTGGTCA+TGG - chr2_1:7617807-7617826 None:intergenic 35.0%
!! TATGCATTGGTCTTCTAACA+TGG + chr2_1:7618185-7618204 Msa0191890:CDS 35.0%
!! ATGCATTGGTCTTCTAACAT+GGG + chr2_1:7618186-7618205 Msa0191890:CDS 35.0%
!!! TTCTCTTTTTTAGTTGCTCG+TGG - chr2_1:7618225-7618244 None:intergenic 35.0%
GAGAAATCTCATCATAGGAA+AGG + chr2_1:7618240-7618259 Msa0191890:CDS 35.0%
TCAACTACATCACTCCAAAA+AGG + chr2_1:7618421-7618440 Msa0191890:CDS 35.0%
ATCACTCCAAAAAGGAGAAA+TGG + chr2_1:7618429-7618448 Msa0191890:CDS 35.0%
TGAAGAAACCATCAAACAGA+AGG + chr2_1:7618506-7618525 Msa0191890:CDS 35.0%
TAAATCAAATGATGCTGCTG+AGG + chr2_1:7618611-7618630 Msa0191890:CDS 35.0%
TTTGTGTTGAGAAACTCTGA+AGG + chr2_1:7618765-7618784 Msa0191890:CDS 35.0%
TCCAAAGAATCGTGAAATTG+CGG + chr2_1:7618839-7618858 Msa0191890:CDS 35.0%
ATTGTGACTCAAAGAGATGA+AGG + chr2_1:7618873-7618892 Msa0191890:CDS 35.0%
AGAGATGAAGGAAATGAAAG+AGG + chr2_1:7618885-7618904 Msa0191890:CDS 35.0%
TTTCCCTGATCTTTGTAACT+GGG - chr2_1:7618944-7618963 None:intergenic 35.0%
! ACAAAGATCAGGGAAAGTAT+TGG + chr2_1:7618948-7618967 Msa0191890:CDS 35.0%
GATGATTCCTTCATGATTCA+AGG + chr2_1:7619209-7619228 Msa0191890:CDS 35.0%
AAACTGACCTTGAATCATGA+AGG - chr2_1:7619219-7619238 None:intergenic 35.0%
AGATCTAACATCTTCCAACA+AGG + chr2_1:7619292-7619311 Msa0191890:CDS 35.0%
AAAACCATACAGAGGTCATT+TGG - chr2_1:7619365-7619384 None:intergenic 35.0%
TCAATAGAAGCTCTTCTATC+AGG - chr2_1:7619464-7619483 None:intergenic 35.0%
!! CTGTTTCTAGAAATTGGTTC+AGG - chr2_1:7619584-7619603 None:intergenic 35.0%
!! GGCTTTCTGTTTCTAGAAAT+TGG - chr2_1:7619590-7619609 None:intergenic 35.0%
TTTGAACCATAGGCTTTCTT+GGG - chr2_1:7619619-7619638 None:intergenic 35.0%
! TTTTGAACCATAGGCTTTCT+TGG - chr2_1:7619620-7619639 None:intergenic 35.0%
TATGGTTCAAAAGAGCCAAA+GGG + chr2_1:7619628-7619647 Msa0191890:CDS 35.0%
! TTCACAATACCTTTTCCCTT+TGG - chr2_1:7619646-7619665 None:intergenic 35.0%
TAGGAAGCAATTGGAAGAAA+AGG + chr2_1:7619795-7619814 Msa0191890:CDS 35.0%
TATTTGATCTTTACCAGGCA+CGG - chr2_1:7619878-7619897 None:intergenic 35.0%
! TAGTGTCATTCAGTTCAATG+TGG + chr2_1:7620004-7620023 Msa0191890:three_prime_UTR 35.0%
! GATGCAATGCAGCTTTTATA+AGG + chr2_1:7620026-7620045 Msa0191890:three_prime_UTR 35.0%
! CTTTTATAAGGTATAGGCCA+TGG + chr2_1:7620038-7620057 Msa0191890:three_prime_UTR 35.0%
TTTACCTTGTAGATTCACCA+TGG - chr2_1:7620058-7620077 None:intergenic 35.0%
GGAATATGAAGAATCGCACA+TGG - chr2_1:7615527-7615546 None:intergenic 40.0%
TGAGTGATGTGTAGTGATAG+TGG - chr2_1:7615598-7615617 None:intergenic 40.0%
CTTCATCAATCTTCTACCCA+TGG + chr2_1:7615658-7615677 Msa0191890:exon 40.0%
! AGAATGGTCTTGGAATCCAT+GGG - chr2_1:7615677-7615696 None:intergenic 40.0%
! AAGAATGGTCTTGGAATCCA+TGG - chr2_1:7615678-7615697 None:intergenic 40.0%
AACTCACACCAACTAGAACA+AGG + chr2_1:7615714-7615733 Msa0191890:CDS 40.0%
GTTCGTGAGAAAATAGCTTC+TGG + chr2_1:7615885-7615904 Msa0191890:CDS 40.0%
! TAACCTCTCAAAGGTGGATT+TGG - chr2_1:7616018-7616037 None:intergenic 40.0%
TTCCAAACCATACCTTCATC+CGG - chr2_1:7616370-7616389 None:intergenic 40.0%
GCAAGTTTCCTGATACACAA+TGG - chr2_1:7616590-7616609 None:intergenic 40.0%
GAGGTTAAGTGATTCTGCAA+AGG + chr2_1:7616632-7616651 Msa0191890:CDS 40.0%
AGGAGTTGACACTAAAGAAG+AGG + chr2_1:7616756-7616775 Msa0191890:CDS 40.0%
!! TATACACGTAGTCTTGTTGC+TGG + chr2_1:7616962-7616981 Msa0191890:CDS 40.0%
! ATCGCGTTTAAGGTATGAAC+TGG + chr2_1:7617039-7617058 Msa0191890:intron 40.0%
TCTCATTCCTTGCGAATCTA+AGG + chr2_1:7617359-7617378 Msa0191890:intron 40.0%
CAGTTATCCTTAGATTCGCA+AGG - chr2_1:7617369-7617388 None:intergenic 40.0%
ACTCTACTGAAGGTTTCATC+TGG - chr2_1:7617595-7617614 None:intergenic 40.0%
! CTCTCATTTTCTGGATCATC+AGG + chr2_1:7617754-7617773 Msa0191890:CDS 40.0%
TCTACAGACAGTATTCCTTC+TGG + chr2_1:7617832-7617851 Msa0191890:CDS 40.0%
AGATGTGAACTTATCGCACA+TGG + chr2_1:7618038-7618057 Msa0191890:intron 40.0%
ATATGCCAATGCATATGCCA+TGG + chr2_1:7618070-7618089 Msa0191890:CDS 40.0%
ATATATGGCGGTACGTTGTA+AGG - chr2_1:7618096-7618115 None:intergenic 40.0%
!! TATGAAGGCATTTGCTGACT+AGG - chr2_1:7618135-7618154 None:intergenic 40.0%
ATTCCAGTGATCCTGATTCA+GGG + chr2_1:7618292-7618311 Msa0191890:CDS 40.0%
AGGAGAAATGGAAATGAGAG+TGG + chr2_1:7618441-7618460 Msa0191890:CDS 40.0%
GAAACCATCAAACAGAAGGT+TGG + chr2_1:7618510-7618529 Msa0191890:CDS 40.0%
ATCACCAACCTTCTGTTTGA+TGG - chr2_1:7618517-7618536 None:intergenic 40.0%
TGCACTTGAATCATTGCAGA+AGG + chr2_1:7618536-7618555 Msa0191890:CDS 40.0%
TCATTGCAGAAGGTCCATAA+AGG + chr2_1:7618546-7618565 Msa0191890:CDS 40.0%
GTCCATAAAGGTGAAAAACG+TGG + chr2_1:7618558-7618577 Msa0191890:CDS 40.0%
! TGCCACGTTTTTCACCTTTA+TGG - chr2_1:7618563-7618582 None:intergenic 40.0%
GAGGGAACAAAAATGAGAAC+TGG + chr2_1:7618649-7618668 Msa0191890:CDS 40.0%
CATCTATCTTCAAAAGGCTC+TGG - chr2_1:7618683-7618702 None:intergenic 40.0%
!! GAGCCTTTTGAAGATAGATG+CGG + chr2_1:7618683-7618702 Msa0191890:CDS 40.0%
GATGCAATCGATTGATGTTC+AGG + chr2_1:7618734-7618753 Msa0191890:CDS 40.0%
TCCGCAATTTCACGATTCTT+TGG - chr2_1:7618843-7618862 None:intergenic 40.0%
AAATGAAAGAGGATCGAAGC+TGG + chr2_1:7618896-7618915 Msa0191890:CDS 40.0%
TGTCCCAGTTACAAAGATCA+GGG + chr2_1:7618938-7618957 Msa0191890:CDS 40.0%
CTTTCCCTGATCTTTGTAAC+TGG - chr2_1:7618945-7618964 None:intergenic 40.0%
!!! CTTTGGCTCTTTTGAACCAT+AGG - chr2_1:7619629-7619648 None:intergenic 40.0%
CTATGGTTCAAAAGAGCCAA+AGG + chr2_1:7619627-7619646 Msa0191890:CDS 40.0%
TCAAAAGAGCCAAAGGGAAA+AGG + chr2_1:7619634-7619653 Msa0191890:CDS 40.0%
AACAGTTCTGTTAAGGTCAG+AGG + chr2_1:7619958-7619977 Msa0191890:CDS 40.0%
! AACCAGAAAGCAGTGTTGGA+TGG - chr2_1:7615993-7616012 None:intergenic 45.0%
TCTCCAAATCCACCTTTGAG+AGG + chr2_1:7616012-7616031 Msa0191890:CDS 45.0%
TCCAAACCATACCTTCATCC+GGG - chr2_1:7616369-7616388 None:intergenic 45.0%
CTTGCGTTTCCATTTGTGTG+CGG - chr2_1:7616612-7616631 None:intergenic 45.0%
ACACAAATGGAAACGCAAGG+AGG + chr2_1:7616613-7616632 Msa0191890:CDS 45.0%
! GTGCTATTCGAGACTCCAAA+AGG - chr2_1:7616916-7616935 None:intergenic 45.0%
AGCACTACTTCGAAAAGAGC+AGG + chr2_1:7616931-7616950 Msa0191890:CDS 45.0%
ACTTCGAAAAGAGCAGGCAA+TGG + chr2_1:7616937-7616956 Msa0191890:CDS 45.0%
!! CATTTGGAGCATCGCGTTTA+AGG + chr2_1:7617029-7617048 Msa0191890:CDS 45.0%
CACTTATCTAAGGGGATTGG+AGG + chr2_1:7617311-7617330 Msa0191890:intron 45.0%
TCTGAATGTCATCCTGCACA+CGG + chr2_1:7617426-7617445 Msa0191890:intron 45.0%
CATTAAAATGCACCGTGTGC+AGG - chr2_1:7617441-7617460 None:intergenic 45.0%
CTGAAGGTTTCATCTGGTAG+AGG - chr2_1:7617589-7617608 None:intergenic 45.0%
! GATCCAGAAAATGAGAGTGC+TGG - chr2_1:7617751-7617770 None:intergenic 45.0%
! AATGCATTTTCGTCGCCAGA+AGG - chr2_1:7617850-7617869 None:intergenic 45.0%
TAAGGCCATGGCATATGCAT+TGG - chr2_1:7618078-7618097 None:intergenic 45.0%
CAGCAAATGCCTTCATACCA+AGG + chr2_1:7618138-7618157 Msa0191890:CDS 45.0%
GGAGGATATCCTTGGTATGA+AGG - chr2_1:7618150-7618169 None:intergenic 45.0%
GAAGGTAAGGAGGATATCCT+TGG - chr2_1:7618158-7618177 None:intergenic 45.0%
GATTCCAGTGATCCTGATTC+AGG + chr2_1:7618291-7618310 Msa0191890:CDS 45.0%
TCAGATTCACTCCCTGAATC+AGG - chr2_1:7618306-7618325 None:intergenic 45.0%
AGGAAGATGCATCTGATGGA+GGG + chr2_1:7618631-7618650 Msa0191890:CDS 45.0%
!! CCTTTTGAAGATAGATGCGG+CGG + chr2_1:7618686-7618705 Msa0191890:CDS 45.0%
!! TGCTAGTTCTGCTCCAAACA+TGG + chr2_1:7618803-7618822 Msa0191890:CDS 45.0%
GTGTCCCAGTTACAAAGATC+AGG + chr2_1:7618937-7618956 Msa0191890:CDS 45.0%
!! TGCTGATTCATCACAACCCA+AGG + chr2_1:7619043-7619062 Msa0191890:CDS 45.0%
! GCTGATTCATCACAACCCAA+GGG + chr2_1:7619044-7619063 Msa0191890:CDS 45.0%
TCTTCTGATCCTCTTCCCTT+GGG - chr2_1:7619062-7619081 None:intergenic 45.0%
ATCTTCTGATCCTCTTCCCT+TGG - chr2_1:7619063-7619082 None:intergenic 45.0%
AGGGAAGAGGATCAGAAGAT+TGG + chr2_1:7619063-7619082 Msa0191890:CDS 45.0%
TAGGCACATTTGGGGAATCA+TGG - chr2_1:7619124-7619143 None:intergenic 45.0%
!! TGTGTCGGTTTCTACCTTGT+TGG - chr2_1:7619309-7619328 None:intergenic 45.0%
!! ATGGTTTTGCAACGCGATTC+AGG + chr2_1:7619377-7619396 Msa0191890:CDS 45.0%
TTTGCAACGCGATTCAGGAT+TGG + chr2_1:7619382-7619401 Msa0191890:CDS 45.0%
TGGATTCTGTTGAAGCCTCA+AGG + chr2_1:7619402-7619421 Msa0191890:CDS 45.0%
TTCATAGTCCATGGTCCTTG+AGG - chr2_1:7619420-7619439 None:intergenic 45.0%
!!! TTGATCGCGCTGGTTTTCTT+TGG - chr2_1:7619530-7619549 None:intergenic 45.0%
ATAGGCTTTCTTGGGAGAGA+TGG - chr2_1:7619611-7619630 None:intergenic 45.0%
ATCTCTCCCAAGAAAGCCTA+TGG + chr2_1:7619610-7619629 Msa0191890:CDS 45.0%
GCAATTGGAAGAAAAGGCGA+TGG + chr2_1:7619801-7619820 Msa0191890:CDS 45.0%
GCTGAAAGAACTGCATCTTC+CGG + chr2_1:7619841-7619860 Msa0191890:CDS 45.0%
TAGGCCATGGTGAATCTACA+AGG + chr2_1:7620051-7620070 Msa0191890:three_prime_UTR 45.0%
TCGCACATGGAGTGTGAACT+GGG - chr2_1:7615514-7615533 None:intergenic 50.0%
ATCGCACATGGAGTGTGAAC+TGG - chr2_1:7615515-7615534 None:intergenic 50.0%
! CAGAAAGCAGTGTTGGATGG+AGG - chr2_1:7615990-7616009 None:intergenic 50.0%
CTCCATCCAACACTGCTTTC+TGG + chr2_1:7615988-7616007 Msa0191890:CDS 50.0%
GGAGAACCAGAAAGCAGTGT+TGG - chr2_1:7615997-7616016 None:intergenic 50.0%
TGTTAGCACACCTGCAGTAC+TGG + chr2_1:7616261-7616280 Msa0191890:CDS 50.0%
ACAAACCTCTCCAGTACTGC+AGG - chr2_1:7616274-7616293 None:intergenic 50.0%
GTCGATGTCAGTTGCAATCC+CGG + chr2_1:7616348-7616367 Msa0191890:CDS 50.0%
TCAGTTGCAATCCCGGATGA+AGG + chr2_1:7616355-7616374 Msa0191890:CDS 50.0%
TGCAATCCCGGATGAAGGTA+TGG + chr2_1:7616360-7616379 Msa0191890:intron 50.0%
! TCCCGGATGAAGGTATGGTT+TGG + chr2_1:7616365-7616384 Msa0191890:intron 50.0%
GGAAACTTGCCGCACACAAA+TGG + chr2_1:7616600-7616619 Msa0191890:intron 50.0%
CGCACACAAATGGAAACGCA+AGG + chr2_1:7616610-7616629 Msa0191890:CDS 50.0%
! GATTTCGCTGCAACGCCTTT+TGG + chr2_1:7616898-7616917 Msa0191890:CDS 50.0%
!! CCAGAAAATGAGAGTGCTGG+TGG - chr2_1:7617748-7617767 None:intergenic 50.0%
! CCACCAGCACTCTCATTTTC+TGG + chr2_1:7617745-7617764 Msa0191890:CDS 50.0%
!! CTTGTTGTTCTGGTCATGGG+CGG - chr2_1:7617803-7617822 None:intergenic 50.0%
ACTCCCTGAATCAGGATCAC+TGG - chr2_1:7618298-7618317 None:intergenic 50.0%
GCTGAGGAAGATGCATCTGA+TGG + chr2_1:7618627-7618646 Msa0191890:CDS 50.0%
GAGGAAGATGCATCTGATGG+AGG + chr2_1:7618630-7618649 Msa0191890:CDS 50.0%
CCGCCGCATCTATCTTCAAA+AGG - chr2_1:7618689-7618708 None:intergenic 50.0%
TCATCACAACCCAAGGGAAG+AGG + chr2_1:7619050-7619069 Msa0191890:CDS 50.0%
GGAGCCAAATGACCTCTGTA+TGG + chr2_1:7619358-7619377 Msa0191890:CDS 50.0%
CGCGTTGCAAAACCATACAG+AGG - chr2_1:7619373-7619392 None:intergenic 50.0%
TGTTGAAGCCTCAAGGACCA+TGG + chr2_1:7619409-7619428 Msa0191890:CDS 50.0%
!! GACTTTGCTTTTGATCGCGC+TGG - chr2_1:7619540-7619559 None:intergenic 50.0%
AAAAGGCGATGGAACGACAG+AGG + chr2_1:7619812-7619831 Msa0191890:CDS 50.0%
AGAACTGCATCTTCCGGTGT+TGG + chr2_1:7619847-7619866 Msa0191890:CDS 50.0%
AAGATAGATGCGGCGGAGAC+TGG + chr2_1:7618693-7618712 Msa0191890:CDS 55.0%
! GCACACCTGCAGTACTGGAG+AGG + chr2_1:7616266-7616285 Msa0191890:CDS 60.0%
GGCGGTACGTTGTAAGGCCA+TGG - chr2_1:7618090-7618109 None:intergenic 60.0%
! GCGGCGGAGACTGGTATTGA+TGG + chr2_1:7618702-7618721 Msa0191890:CDS 60.0%
AGGCACGGTTCGACCAACAC+CGG - chr2_1:7619863-7619882 None:intergenic 60.0%
!! GGTGTTGGTCGAACCGTGCC+TGG + chr2_1:7619862-7619881 Msa0191890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7615501 7620329 7615501 ID=Msa0191890;Name=Msa0191890
chr2_1 mRNA 7615501 7620329 7615501 ID=Msa0191890-mRNA-1;Parent=Msa0191890;Name=Msa0191890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=176|1|1|1|1|1|9|342|891
chr2_1 exon 7615501 7615735 7615501 ID=Msa0191890-mRNA-1:exon:3471;Parent=Msa0191890-mRNA-1
chr2_1 exon 7615857 7616033 7615857 ID=Msa0191890-mRNA-1:exon:3472;Parent=Msa0191890-mRNA-1
chr2_1 exon 7616249 7616376 7616249 ID=Msa0191890-mRNA-1:exon:3473;Parent=Msa0191890-mRNA-1
chr2_1 exon 7616601 7616653 7616601 ID=Msa0191890-mRNA-1:exon:3474;Parent=Msa0191890-mRNA-1
chr2_1 exon 7616739 7616788 7616739 ID=Msa0191890-mRNA-1:exon:3475;Parent=Msa0191890-mRNA-1
chr2_1 exon 7616898 7617050 7616898 ID=Msa0191890-mRNA-1:exon:3476;Parent=Msa0191890-mRNA-1
chr2_1 exon 7617654 7617889 7617654 ID=Msa0191890-mRNA-1:exon:3477;Parent=Msa0191890-mRNA-1
chr2_1 exon 7618040 7619655 7618040 ID=Msa0191890-mRNA-1:exon:3478;Parent=Msa0191890-mRNA-1
chr2_1 exon 7619784 7620329 7619784 ID=Msa0191890-mRNA-1:exon:3479;Parent=Msa0191890-mRNA-1
chr2_1 five_prime_UTR 7615501 7615676 7615501 ID=Msa0191890-mRNA-1:five_prime_utr;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7615677 7615735 7615677 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7615857 7616033 7615857 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7616249 7616376 7616249 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7616601 7616653 7616601 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7616739 7616788 7616739 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7616898 7617050 7616898 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7617654 7617889 7617654 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7618040 7619655 7618040 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 CDS 7619784 7619987 7619784 ID=Msa0191890-mRNA-1:cds;Parent=Msa0191890-mRNA-1
chr2_1 three_prime_UTR 7619988 7620329 7619988 ID=Msa0191890-mRNA-1:three_prime_utr;Parent=Msa0191890-mRNA-1
Gene Sequence

>Msa0191890

ATGGATTCCAAGACCATTCTTGATTATGCTCTGTTTCAACTCACACCAACTAGAACAAGATTTGAGCTTTTGGTGTTTAATGGAGCTGTTCGTGAGAAAATAGCTTCTGGGTTATTTGAACCTTTCATTTCTCATCTCAAATTTGTTAAAGATGAGATCTCTAAAGGTGGATACTCTATTAGGCTATTGCCTCCATCCAACACTGCTTTCTGGTTCTCCAAATCCACCTTTGAGAGATTTGTGCGGTTTGTTAGCACACCTGCAGTACTGGAGAGGTTTGTTAGCCTTGAAAAAGAAATCCAGCAGATTGAAAGTCAATTTGAAGCGAATGCGTTGTCGATGTCAGTTGCAATCCCGGATGAAGGAAACTTGCCGCACACAAATGGAAACGCAAGGAGGTTAAGTGATTCTGCAAAGTTAAATGATGCACTTGAAGGAGTTGACACTAAAGAAGAGGAAAACTCAAAGATTTCGCTGCAACGCCTTTTGGAGTCTCGAATAGCACTACTTCGAAAAGAGCAGGCAATGGCATATACACGTAGTCTTGTTGCTGGATTTGATATTGACAACATTGATGATCTTGTATATTTTGCAAATGCATTTGGAGCATCGCGTTTAAGGGAAGCTTGCATTAATTTCAAGGATTTATGGAAGAAAAAGCATGCAGATGATCTTTGGGTTCAAGAAGTAGCTGCAATGCAATCAAACTTACCACCAGCACTCTCATTTTCTGGATCATCAGGAATTATACTGGCGAATGACATAGCCGCCCATGACCAGAACAACAAGAATAATAGCTCTACAGACAGTATTCCTTCTGGCGACGAAAATGCATTTGTAGAAAACAAAAAAGACGATGTGAACTTATCGCACATGGCGAATGTTCATATGCCAATGCATATGCCATGGCCTTACAACGTACCGCCATATATGTATAATCTTCAAAATCCTAGTCAGCAAATGCCTTCATACCAAGGATATCCTCCTTACCTTCAAAATAATATGCATTGGTCTTCTAACATGGGAGTGAATCAAAAACCACGAGCAACTAAAAAAGAGAAATCTCATCATAGGAAAGGATCAGAAGAATATGAAGAGCAGCAAACAGATTCCAGTGATCCTGATTCAGGGAGTGAATCTGATTCAGATAAACAGAAAGACTCAAACAATTCTTTGAAGGATGATAAGAGGAAAAAAAACAGAAGGAAATCATCTGGAACAGTTGTGATACGTAATATCAACTACATCACTCCAAAAAGGAGAAATGGAAATGAGAGTGGAGTATCTGATGAATCTTCTTTAGAAGACGATGCTATCTTCGATGAAGAAACCATCAAACAGAAGGTTGGTGATGCACTTGAATCATTGCAGAAGGTCCATAAAGGTGAAAAACGTGGCAATCGAAAAAAGTCAGTGACCAAACACAATAAATCAAATGATGCTGCTGAGGAAGATGCATCTGATGGAGGGAACAAAAATGAGAACTGGAATGCATTCCAGAGCCTTTTGAAGATAGATGCGGCGGAGACTGGTATTGATGGATCAGAACAGATGCAATCGATTGATGTTCAGGATGAACATTTTGTGTTGAGAAACTCTGAAGGAACAATGTCATACGCTGCTAGTTCTGCTCCAAACATGGATTTCAATGAAGTTCCAAAGAATCGTGAAATTGCGGATGACTCATTTATTGTGACTCAAAGAGATGAAGGAAATGAAAGAGGATCGAAGCTGGATGAATATGTAGACAACTGTGTCCCAGTTACAAAGATCAGGGAAAGTATTGGTGAAGATATGATGTTAGCAAACACATCAAGAGAACCAAAAATTGAACTTGATGATCCGTTAAATACTTATGCTGCTGATTCATCACAACCCAAGGGAAGAGGATCAGAAGATTGGTTTATTGTTGATAACAATTTGGAAAGTATGAGAAGCCATGATTCCCCAAATGTGCCTATAGTATTTGATGGTGATAGAACTTTATCATCAGTGAGTGAAAAAAGAAGTGATAGACCTATCATTGATGATTCCTTCATGATTCAAGGTCAGTTTGTAGACAATAATCTTTCTGATTCCCAATGGAAGACAGATATAAGTATGGTTGAAGATCTAACATCTTCCAACAAGGTAGAAACCGACACAAAAGAAAAGAATGCATTATCAAAGATAGAGGAGCCAAATGACCTCTGTATGGTTTTGCAACGCGATTCAGGATTGGATTCTGTTGAAGCCTCAAGGACCATGGACTATGAAATTGACTTTTCTTACACAGAACCTGATAGAAGAGCTTCTATTGATGATTCACATGTTAATGTCAATAACAACAATCTTTCTGATAGTCCAAAGAAAACCAGCGCGATCAAAAGCAAAGTCTCACGTTTGTCAAAGAGCACGCCTGAACCAATTTCTAGAAACAGAAAGCCATCTCTCCCAAGAAAGCCTATGGTTCAAAAGAGCCAAAGGGAAAAGGAAGATGAAATTAGGAAGCAATTGGAAGAAAAGGCGATGGAACGACAGAGGAGAATCGCTGAAAGAACTGCATCTTCCGGTGTTGGTCGAACCGTGCCTGGTAAAGATCAAATAGCAAAGATTTCTTCAAAAACTGACAAGAATAAGACTCAAACTATTAAAGAGACAAACAGAAACAGTTCTGTTAAGGTCAGAGGAATTTAG

Protein sequence

>Msa0191890

MDSKTILDYALFQLTPTRTRFELLVFNGAVREKIASGLFEPFISHLKFVKDEISKGGYSIRLLPPSNTAFWFSKSTFERFVRFVSTPAVLERFVSLEKEIQQIESQFEANALSMSVAIPDEGNLPHTNGNARRLSDSAKLNDALEGVDTKEEENSKISLQRLLESRIALLRKEQAMAYTRSLVAGFDIDNIDDLVYFANAFGASRLREACINFKDLWKKKHADDLWVQEVAAMQSNLPPALSFSGSSGIILANDIAAHDQNNKNNSSTDSIPSGDENAFVENKKDDVNLSHMANVHMPMHMPWPYNVPPYMYNLQNPSQQMPSYQGYPPYLQNNMHWSSNMGVNQKPRATKKEKSHHRKGSEEYEEQQTDSSDPDSGSESDSDKQKDSNNSLKDDKRKKNRRKSSGTVVIRNINYITPKRRNGNESGVSDESSLEDDAIFDEETIKQKVGDALESLQKVHKGEKRGNRKKSVTKHNKSNDAAEEDASDGGNKNENWNAFQSLLKIDAAETGIDGSEQMQSIDVQDEHFVLRNSEGTMSYAASSAPNMDFNEVPKNREIADDSFIVTQRDEGNERGSKLDEYVDNCVPVTKIRESIGEDMMLANTSREPKIELDDPLNTYAADSSQPKGRGSEDWFIVDNNLESMRSHDSPNVPIVFDGDRTLSSVSEKRSDRPIIDDSFMIQGQFVDNNLSDSQWKTDISMVEDLTSSNKVETDTKEKNALSKIEEPNDLCMVLQRDSGLDSVEASRTMDYEIDFSYTEPDRRASIDDSHVNVNNNNLSDSPKKTSAIKSKVSRLSKSTPEPISRNRKPSLPRKPMVQKSQREKEDEIRKQLEEKAMERQRRIAERTASSGVGRTVPGKDQIAKISSKTDKNKTQTIKETNRNSSVKVRGI*