AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572420 MtrunA17_Chr8g0387891 92.910 1354 82 1 1 1340 1 1354 0.0 2387
Msa0572420 MtrunA17_Chr8g0387911 65.385 702 164 7 673 1340 3 659 0.0 796
Msa0572420 MtrunA17_Chr8g0387911 33.770 687 312 20 409 1010 1 629 2.32e-48 184
Msa0572420 MtrunA17_Chr8g0387881 28.064 816 448 17 537 1334 83 777 6.75e-59 218
Msa0572420 MtrunA17_Chr8g0387881 26.835 395 230 5 334 669 108 502 1.86e-20 98.2
Msa0572420 MtrunA17_Chr8g0387901 84.286 70 11 0 1271 1340 1 70 9.36e-25 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572420 AT5G41790.1 28.694 1279 623 33 123 1338 528 1580 3.60e-76 279
Msa0572420 AT5G41790.1 32.597 724 385 19 1 715 1 630 2.63e-52 202
Msa0572420 AT5G41790.2 28.694 1279 623 33 123 1338 528 1580 3.60e-76 279
Msa0572420 AT5G41790.2 32.597 724 385 19 1 715 1 630 2.63e-52 202
Msa0572420 AT1G64330.1 39.130 230 105 5 9 224 9 217 8.79e-30 126
Msa0572420 AT1G64320.2 32.609 184 121 1 345 525 105 288 2.98e-14 78.2
Msa0572420 AT1G64320.2 24.655 653 338 21 692 1333 109 618 6.69e-11 67.4
Msa0572420 AT1G64320.1 32.609 184 121 1 345 525 105 288 2.98e-14 78.2
Msa0572420 AT1G64320.1 24.655 653 338 21 692 1333 109 618 6.69e-11 67.4
Msa0572420 AT5G41780.2 27.922 308 161 8 1025 1331 284 531 1.06e-13 76.3
Msa0572420 AT5G41780.3 27.922 308 161 8 1025 1331 284 531 1.06e-13 76.3
Msa0572420 AT5G41780.1 27.922 308 161 8 1025 1331 284 531 1.06e-13 76.3
Msa0572420 AT5G41780.4 27.922 308 161 8 1025 1331 284 531 1.06e-13 76.3

Find 239 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAATCTTCAACTTAATT+TGG 0.157767 4_1:+75353178 Msa0572420:CDS
GAACTTCCAGGTCAGATTTC+TGG 0.200021 4_1:-75352866 None:intergenic
AATATAAACAAATTGATAAT+TGG 0.205472 4_1:+75353726 Msa0572420:CDS
AGCTCTTTAGTTTCAGCTTT+TGG 0.207379 4_1:+75347567 Msa0572420:five_prime_UTR
AAAACTTGAAGCAATATTTA+AGG 0.207712 4_1:+75348503 Msa0572420:five_prime_UTR
TGGAGCTGCTCTTCTTTATC+AGG 0.210060 4_1:-75350469 None:intergenic
GCTCACCAAAGGCAACTATT+TGG 0.214310 4_1:-75353151 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 4_1:-75351899 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 4_1:-75352292 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 4_1:-75352685 None:intergenic
TAGTTCCTCTTCTCTTTCTT+TGG 0.220995 4_1:-75351830 None:intergenic
ATCTGAATTAAGTCAGTTAA+AGG 0.235617 4_1:+75351558 Msa0572420:CDS
AATTTCATGAATGGAATCTT+TGG 0.249338 4_1:-75347213 None:intergenic
TAAACTGGCACAGGAAAATT+TGG 0.249711 4_1:+75353373 Msa0572420:CDS
CTTGTCTGCTTCTTGTATCT+TGG 0.254462 4_1:-75351077 None:intergenic
ATGAGTCCTCAAATCTTATC+AGG 0.261640 4_1:+75351644 Msa0572420:CDS
GAACTTCCAAGTCAGATTTC+TGG 0.263958 4_1:-75352080 None:intergenic
GAACTTCCAAGTCAGATTTC+TGG 0.263958 4_1:-75352473 None:intergenic
ATCAAAGGCAAGCGAGAAAA+AGG 0.270364 4_1:+75350833 Msa0572420:CDS
TTGAACACTCTGAAGTTTCT+TGG 0.270554 4_1:-75352512 None:intergenic
TCAAGTTGACAATCTGAAAA+AGG 0.281841 4_1:+75353523 Msa0572420:CDS
CCATAAGTCTCTCTTGTTCC+AGG 0.283572 4_1:-75352968 None:intergenic
GCAAAGATGAAGAGCAAATA+AGG 0.284452 4_1:+75353063 Msa0572420:CDS
ATGAAGAAACTCAAAGATAA+TGG 0.288409 4_1:+75351862 Msa0572420:CDS
GATTCAGAAAAGAGGATATA+AGG 0.290887 4_1:+75348480 Msa0572420:five_prime_UTR
CTATAAGTCTCTCTTGTTCC+AGG 0.293435 4_1:-75352182 None:intergenic
GCTCTTCAACTTCACTCTTC+TGG 0.295087 4_1:-75353259 None:intergenic
GCTTCAGGATAAACTTTATA+AGG 0.298812 4_1:+75353460 Msa0572420:CDS
GATACAAATATCAAAACTTT+TGG 0.303373 4_1:+75351138 Msa0572420:CDS
TTTCCACAAGCTGAACTTCC+AGG 0.314911 4_1:-75352878 None:intergenic
AGATCAGATGGTAACTGATT+TGG 0.316800 4_1:+75353835 Msa0572420:CDS
CTCACCAAAGGCAACTATTT+GGG 0.320192 4_1:-75353150 None:intergenic
GTTCTGTAACCCGGAGCTTT+TGG 0.321991 4_1:-75353964 None:intergenic
TGTAAACTTAATTAAACTAT+AGG 0.326875 4_1:+75347333 Msa0572420:five_prime_UTR
AAACTTAGAGATAGAGAGTT+AGG 0.328511 4_1:-75347398 None:intergenic
GAGTTTCAAAAGATAATTGA+TGG 0.329519 4_1:+75350941 Msa0572420:CDS
ATTTGAGTTCTCTGCGCTTC+AGG 0.332437 4_1:+75353445 Msa0572420:CDS
GCAGAAAACAAAAGAAGAAT+TGG 0.332606 4_1:+75353559 Msa0572420:CDS
TGAAGAAACTCAAAGATAAT+GGG 0.336542 4_1:+75351863 Msa0572420:CDS
TGAAGTTGCTGAGAGGAAAA+TGG 0.336584 4_1:+75353772 Msa0572420:CDS
AATCTGTCAGTGAGATGAAT+AGG 0.344520 4_1:+75354254 Msa0572420:CDS
GAACTGGAAGAGCGCAATTT+AGG 0.347892 4_1:+75351772 Msa0572420:CDS
AGAGACACAAATCACAAATC+TGG 0.348240 4_1:+75351672 Msa0572420:CDS
GGAGGAACTGCAGGGTAAAA+AGG 0.350540 4_1:+75354315 Msa0572420:CDS
AGTGTCCAACTCGCGGTCTT+TGG 0.377699 4_1:-75353291 None:intergenic
CTCTGATTCAGATTCGGATT+CGG 0.379482 4_1:+75350871 Msa0572420:CDS
CCATCAGGCAGCTCTGTTTG+TGG 0.387435 4_1:+75354521 Msa0572420:CDS
CTGAGGTACCATCCTCTTCA+AGG 0.389764 4_1:-75350700 None:intergenic
AAGGCAGAGGAAGAGGCTTC+AGG 0.392378 4_1:+75353479 Msa0572420:CDS
AAACATCTCCCATGAGCTTC+AGG 0.394831 4_1:+75354222 Msa0572420:CDS
TCATCTTCAAATTTCATGAA+TGG 0.397445 4_1:-75347222 None:intergenic
CCTGGAGATGATTGATCACT+TGG 0.398053 4_1:-75353094 None:intergenic
TCCTTTCCTCACCAATCTGT+TGG 0.398228 4_1:-75351285 None:intergenic
AACCAGGCAGATAAAGAATC+TGG 0.399619 4_1:+75353007 Msa0572420:CDS
TTCCAGATTCTTTATCTGCC+TGG 0.400921 4_1:-75353009 None:intergenic
AGAGGAAGGCATGTTGGACT+TGG 0.402054 4_1:+75354480 Msa0572420:CDS
ATCCAGCTCTGATTCAGATT+CGG 0.402519 4_1:+75350865 Msa0572420:CDS
GCACTTTGTTTGAGAATGTC+AGG 0.405597 4_1:+75353912 Msa0572420:CDS
CTTCATCTCCTTTCTCCTCC+AGG 0.406034 4_1:-75353886 None:intergenic
AGAAACATGCTGAGAAAGAC+AGG 0.408956 4_1:+75351581 Msa0572420:CDS
TTGTTCACCATGTAGATTCC+AGG 0.410812 4_1:-75350341 None:intergenic
AGGAAAAGAGGGAGGCCATC+AGG 0.414307 4_1:+75354506 Msa0572420:CDS
GCCTGTCAAACCAAAAGCTC+CGG 0.415656 4_1:+75353954 Msa0572420:CDS
CAGCTCCAGGGAGCTAAAAC+AGG 0.419836 4_1:+75350484 Msa0572420:CDS
CCTGGATCAAGAGAGACTTA+TGG 0.421192 4_1:+75352575 Msa0572420:CDS
ATTGATCAACTAGGTTTCTC+AGG 0.421379 4_1:-75351321 None:intergenic
TAGTTCCCTGATAAGATTTG+AGG 0.422432 4_1:-75351650 None:intergenic
TCAACCCAAATAGTTGCCTT+TGG 0.424305 4_1:+75353146 Msa0572420:CDS
AACAACAATAAGCCACAATC+TGG 0.428884 4_1:+75351441 Msa0572420:CDS
TGAAGACAGGATTGCTACTC+TGG 0.430102 4_1:+75354057 Msa0572420:CDS
CCATAAGTCTCTCTTGATCC+AGG 0.435009 4_1:-75352575 None:intergenic
GAAGTTGATGAAAGAGAAAG+AGG 0.436821 4_1:+75354462 Msa0572420:CDS
AAGAGTTTCGTGAAGGCATT+GGG 0.436849 4_1:+75353807 Msa0572420:CDS
ATTCATATGGCAGAGATAGA+AGG 0.439111 4_1:+75353122 Msa0572420:CDS
TCGTTTGTTGGAGGAACTGC+AGG 0.439419 4_1:+75354306 Msa0572420:CDS
CCGAGATGAGATCAGTAAAC+TGG 0.439889 4_1:+75353358 Msa0572420:CDS
AGCAGACAAAATAGATCATT+CGG 0.441030 4_1:+75353400 Msa0572420:CDS
AATGCTTTCGACTTGATTTG+AGG 0.442769 4_1:-75352403 None:intergenic
TGAGAGGAAAATGGAAGAAA+TGG 0.442900 4_1:+75353781 Msa0572420:CDS
ACTTGATATTGCTAAGAAGT+TGG 0.446043 4_1:+75350374 Msa0572420:five_prime_UTR
CCTGGAACAAGAGAGACTTA+TGG 0.446554 4_1:+75352968 Msa0572420:CDS
TGTGTCAACAGTGTGATATC+TGG 0.447261 4_1:+75354139 Msa0572420:CDS
AGAACTTGAAGTGGCGCATA+AGG 0.448377 4_1:+75350973 Msa0572420:CDS
TTGGATATCAGTGGAGAAGA+TGG 0.448774 4_1:+75350393 Msa0572420:exon
TACTGAACTAAATAAGCAAC+TGG 0.449051 4_1:+75351168 Msa0572420:CDS
AATAAGCAACTGGACATTGC+TGG 0.450405 4_1:+75351178 Msa0572420:CDS
GAAGAGTTTCGTGAAGGCAT+TGG 0.453185 4_1:+75353806 Msa0572420:CDS
CATAAGTCTCTCTTGTTCCA+GGG 0.454250 4_1:-75352967 None:intergenic
GAAGGACTTATGCTGCTCTC+TGG 0.459241 4_1:-75354606 None:intergenic
ACTCATTCTTATGCCCTTCG+TGG 0.460651 4_1:-75351627 None:intergenic
ATCTCAGATAGAAAATTTGT+TGG 0.461527 4_1:+75352704 Msa0572420:CDS
GGACTTGGGAGAGGAAAAGA+GGG 0.461535 4_1:+75354495 Msa0572420:CDS
AATAATAATGGAATGAAAAG+TGG 0.461986 4_1:-75347282 None:intergenic
GAGACACAAATCACAAATCT+GGG 0.465332 4_1:+75351673 Msa0572420:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 4_1:+75352044 Msa0572420:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 4_1:+75352437 Msa0572420:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 4_1:+75352830 Msa0572420:CDS
ACATGCTCAGAAAACTGAAC+TGG 0.466249 4_1:+75351957 Msa0572420:CDS
TCTCCAGGATAAAATTCATA+TGG 0.467977 4_1:+75353109 Msa0572420:CDS
GAGAGATAAAGATCGTTTGT+TGG 0.470868 4_1:+75354294 Msa0572420:CDS
CATCCTTCAATTGATCAACT+AGG 0.470968 4_1:-75351330 None:intergenic
AGAACAATTGCTAAGTGAAA+AGG 0.470987 4_1:+75353982 Msa0572420:CDS
ATGAAAAGCTTCATTGTTAG+CGG 0.473067 4_1:-75354092 None:intergenic
TATAAGTCTCTCTTGTTCCA+GGG 0.474446 4_1:-75352181 None:intergenic
ATCTCAGATAGACAATTTGT+TGG 0.478113 4_1:+75352311 Msa0572420:CDS
TGATAAAGAAGAGCAGCTCC+AGG 0.481731 4_1:+75350471 Msa0572420:CDS
GCTAGAGGTGAAGGCAAGAA+AGG 0.482586 4_1:+75354372 Msa0572420:CDS
ATCTGTCAGTGAGATGAATA+GGG 0.483398 4_1:+75354255 Msa0572420:CDS
ACTTTATAAGGCAGAGGAAG+AGG 0.486519 4_1:+75353472 Msa0572420:CDS
TGGACTTGGGAGAGGAAAAG+AGG 0.486625 4_1:+75354494 Msa0572420:CDS
TTCACTTCCTGGAATCTACA+TGG 0.491403 4_1:+75350334 Msa0572420:five_prime_UTR
GGAATTAACTCTGAGGGAAA+AGG 0.491576 4_1:+75354342 Msa0572420:CDS
GCAGATAAAGAATCTGGAAC+TGG 0.493067 4_1:+75353013 Msa0572420:CDS
CCTCTGTAACCTCCAGATTG+TGG 0.497168 4_1:-75351453 None:intergenic
ATGATTGATCACTTGGACGT+TGG 0.497533 4_1:-75353087 None:intergenic
TTCACTCTTCTGGCTGCGTA+TGG 0.497591 4_1:-75353249 None:intergenic
TTCAGAGAGAACTTGAAGAC+AGG 0.497857 4_1:+75354044 Msa0572420:CDS
AAACCTAGTTGATCAATTGA+AGG 0.498028 4_1:+75351327 Msa0572420:CDS
AGAGATAGAGAGTTAGGAAG+AGG 0.498876 4_1:-75347392 None:intergenic
AAATCAATTGGTATTGATTG+TGG 0.500035 4_1:-75350769 None:intergenic
CATGCTGTGTGTAAATCAAT+TGG 0.500843 4_1:-75350781 None:intergenic
GAGAGCTGTCTCTTTCTCCA+TGG 0.510229 4_1:-75351263 None:intergenic
GGAGCTGCTCTTCTTTATCA+GGG 0.518143 4_1:-75350468 None:intergenic
GCTGTCTCAGAACAGAATAC+AGG 0.519724 4_1:+75351528 Msa0572420:CDS
ATTCTTAATTTGCTCACCAA+AGG 0.522434 4_1:-75353162 None:intergenic
ACCGCTTGCTGAATTGATTG+AGG 0.523412 4_1:+75350742 Msa0572420:CDS
TCAAATTCAAAGTCTGAAAG+AGG 0.523528 4_1:+75352143 Msa0572420:CDS
TCAAATTCAAAGTCTGAAAG+AGG 0.523528 4_1:+75352536 Msa0572420:CDS
ATATTAGCTCATTACATGCT+CGG 0.524454 4_1:+75352730 Msa0572420:CDS
CCTCTTCAAAATTTCTGCTG+AGG 0.526955 4_1:-75350717 None:intergenic
ATCCGAATCTGAATCAGAGC+TGG 0.527732 4_1:-75350867 None:intergenic
GGTTGAGAAGCTAGAGGTGA+AGG 0.528896 4_1:+75354363 Msa0572420:CDS
GCTTAATAGATTCAGAAAAG+AGG 0.529190 4_1:+75348472 Msa0572420:five_prime_UTR
CCAAGTGATCAATCATCTCC+AGG 0.530449 4_1:+75353094 Msa0572420:CDS
ATTGTCAACTTGAGCTGTGA+AGG 0.530781 4_1:-75353513 None:intergenic
CTGAATTTGAATTGAACACT+CGG 0.531534 4_1:-75352916 None:intergenic
TCTTCAACTTAATTTGGCAC+AGG 0.532614 4_1:+75353184 Msa0572420:CDS
TTGATGAAAGAGAAAGAGGA+AGG 0.532949 4_1:+75354466 Msa0572420:CDS
GAAGACAGAAAACAATAGCT+TGG 0.533835 4_1:+75351240 Msa0572420:CDS
GGAGGTTGACAGAAAATCCC+TGG 0.534305 4_1:+75352164 Msa0572420:CDS
GGAGGTTGACAGAAAATCCC+TGG 0.534305 4_1:+75352950 Msa0572420:CDS
TGAGATCAGTAAACTGGCAC+AGG 0.536919 4_1:+75353364 Msa0572420:CDS
GGAGGTTGGCAGAAAATCCC+TGG 0.537472 4_1:+75352557 Msa0572420:CDS
GGATAAACTTTATAAGGCAG+AGG 0.539603 4_1:+75353466 Msa0572420:CDS
GACAGTTACACATGAAGAGA+AGG 0.541075 4_1:+75351021 Msa0572420:CDS
AAAAGAGACCTGGAGGAGAA+AGG 0.542883 4_1:+75353878 Msa0572420:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 4_1:+75352038 Msa0572420:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 4_1:+75352431 Msa0572420:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 4_1:+75352824 Msa0572420:CDS
TGAACTTAAGAAGACGGTTG+AGG 0.546303 4_1:+75354432 Msa0572420:CDS
AGAGAAAGAGGAAGGCATGT+TGG 0.551950 4_1:+75354474 Msa0572420:CDS
GAGACAGCTCTCCAACAGAT+TGG 0.552178 4_1:+75351274 Msa0572420:CDS
GCCCTTCGTGGATCTGAGTG+AGG 0.552709 4_1:-75351615 None:intergenic
GGATTCGGATTATTCTTCAA+AGG 0.553942 4_1:+75350886 Msa0572420:CDS
GAAGTCCAAAGAAAGAGAAG+AGG 0.554619 4_1:+75351825 Msa0572420:CDS
TGACAGGTGAGTTAAAGAAA+AGG 0.555026 4_1:+75350810 Msa0572420:CDS
TTTCATTGTCAACCATTCTG+AGG 0.555248 4_1:-75353622 None:intergenic
TGAAGACCTGAAAAGAGACC+TGG 0.555585 4_1:+75353868 Msa0572420:CDS
AAAGGAAGATAGCTTTAGAA+AGG 0.556622 4_1:+75354000 Msa0572420:CDS
CCAGTTTACTGATCTCATCT+CGG 0.559304 4_1:-75353358 None:intergenic
AGGCATGTTGGACTTGGGAG+AGG 0.561691 4_1:+75354486 Msa0572420:CDS
CATAAGTCTCTCTTGATCCA+GGG 0.561781 4_1:-75352574 None:intergenic
CCTGTCAAACCAAAAGCTCC+GGG 0.563571 4_1:+75353955 Msa0572420:CDS
TCAAATTCAGAGTCTGAAAG+AGG 0.564270 4_1:+75352929 Msa0572420:CDS
ACAACACCAGAAATCTGACT+TGG 0.566725 4_1:+75352074 Msa0572420:CDS
ACAACACCAGAAATCTGACT+TGG 0.566725 4_1:+75352467 Msa0572420:CDS
TTGAATTTGAATTGAACACT+CGG 0.566781 4_1:-75352130 None:intergenic
TAAAGATGACAACCTTGAAG+AGG 0.567802 4_1:+75350688 Msa0572420:intron
AGAAAACAATAGCTTGGCCA+TGG 0.568696 4_1:+75351246 Msa0572420:CDS
CATGGATCTTCAGAGAACAT+TGG 0.568700 4_1:+75353667 Msa0572420:CDS
CTGGGATAGATACTGTGAGC+AGG 0.568744 4_1:+75354158 Msa0572420:CDS
TCCTCAATCAATTCAGCAAG+CGG 0.569949 4_1:-75350743 None:intergenic
TGTTGTTGAACTTAAGAAGA+CGG 0.572100 4_1:+75354426 Msa0572420:CDS
CAGTGAGATGAATAGGGTGA+AGG 0.572999 4_1:+75354261 Msa0572420:CDS
CAAAGTCTGAAAGAGGAGGT+TGG 0.573897 4_1:+75352543 Msa0572420:CDS
TCCAACAGATTGGTGAGGAA+AGG 0.575028 4_1:+75351284 Msa0572420:CDS
GTGTCAACAGTGTGATATCT+GGG 0.575454 4_1:+75354140 Msa0572420:CDS
AAATCATATCGAAGACACGC+AGG 0.576181 4_1:+75354581 Msa0572420:CDS
GAGGAAGGCATGTTGGACTT+GGG 0.576737 4_1:+75354481 Msa0572420:CDS
TAATTGGTTTAATGAATGCA+AGG 0.577234 4_1:+75353742 Msa0572420:CDS
GAAGATGGTGAAACATCACT+TGG 0.577642 4_1:+75350408 Msa0572420:exon
AAAATAGATCATTCGGAGAG+AGG 0.578565 4_1:+75353407 Msa0572420:CDS
CATTGGGTCAAAAGATCAGA+TGG 0.581037 4_1:+75353823 Msa0572420:CDS
GGAAGAGGAATTAACTCTGA+GGG 0.583443 4_1:+75354336 Msa0572420:CDS
ACAACACCAGAAATCTGACC+TGG 0.589946 4_1:+75352860 Msa0572420:CDS
GTATCTTGGTCAATGCTGCA+AGG 0.590088 4_1:-75351063 None:intergenic
TTAGCAATTGTTCTGTAACC+CGG 0.590403 4_1:-75353973 None:intergenic
TGAGAATGTCAGGAATCTTG+AGG 0.591834 4_1:+75353922 Msa0572420:CDS
AGTGAGATGAATAGGGTGAA+GGG 0.593063 4_1:+75354262 Msa0572420:CDS
AATGCTTTCGACTCGAGTTG+AGG 0.594442 4_1:-75352796 None:intergenic
GATGACAACCTTGAAGAGGA+TGG 0.594910 4_1:+75350692 Msa0572420:intron
AGATAAAGATCGTTTGTTGG+AGG 0.595739 4_1:+75354297 Msa0572420:CDS
ACACAGCATGATCATCTGAC+AGG 0.595806 4_1:+75350794 Msa0572420:CDS
CCACAAACAGAGCTGCCTGA+TGG 0.597178 4_1:-75354521 None:intergenic
CAAGATACAAGAAGCAGACA+AGG 0.599113 4_1:+75351078 Msa0572420:CDS
AATGCTTTCAACTCGAGTTG+AGG 0.603109 4_1:-75352010 None:intergenic
GCTCTAAAGTGTCCAACTCG+CGG 0.604884 4_1:-75353298 None:intergenic
GAGTTAAAGAAAAGGATCAA+AGG 0.606217 4_1:+75350818 Msa0572420:CDS
TGAGTCCTCAAATCTTATCA+GGG 0.607053 4_1:+75351645 Msa0572420:CDS
GAAGAAACTCAAAGATAATG+GGG 0.608727 4_1:+75351864 Msa0572420:CDS
CCCTTCGTGGATCTGAGTGA+GGG 0.618747 4_1:-75351614 None:intergenic
ACAAATCACAAATCTGGGGA+TGG 0.618881 4_1:+75351678 Msa0572420:CDS
AACAATAAGCCACAATCTGG+AGG 0.619268 4_1:+75351444 Msa0572420:CDS
GTGAGATGAATAGGGTGAAG+GGG 0.619891 4_1:+75354263 Msa0572420:CDS
AATTCAAAGTCTGAAAGAGG+AGG 0.620184 4_1:+75352146 Msa0572420:CDS
AATTCAAAGTCTGAAAGAGG+AGG 0.620184 4_1:+75352539 Msa0572420:CDS
ATTAAAGCAAGAACTTGAAG+TGG 0.625206 4_1:+75350964 Msa0572420:CDS
AAGAGCCAAAGACCGCGAGT+TGG 0.625550 4_1:+75353286 Msa0572420:CDS
GGAAGATAGCTTTAGAAAGG+CGG 0.626186 4_1:+75354003 Msa0572420:CDS
AATCATATCGAAGACACGCA+GGG 0.626640 4_1:+75354582 Msa0572420:CDS
AATTCAGAGTCTGAAAGAGG+AGG 0.627004 4_1:+75352932 Msa0572420:CDS
CGAGTGTAGTGACTATCTCA+AGG 0.629222 4_1:+75354558 Msa0572420:CDS
GCTAAGAAGTTGGATATCAG+TGG 0.632704 4_1:+75350384 Msa0572420:five_prime_UTR
TGACTTGGAAGTTCAGCTTG+TGG 0.632873 4_1:+75352089 Msa0572420:CDS
TGACTTGGAAGTTCAGCTTG+TGG 0.632873 4_1:+75352482 Msa0572420:CDS
GGAAAAGGTTGAGAAGCTAG+AGG 0.635226 4_1:+75354357 Msa0572420:CDS
CCACAATCTGGAGGTTACAG+AGG 0.642292 4_1:+75351453 Msa0572420:CDS
AGAGGTGAAGGCAAGAAAGG+AGG 0.644044 4_1:+75354375 Msa0572420:CDS
TGATAAGTCAGTGATTGCAA+AGG 0.648880 4_1:+75351351 Msa0572420:CDS
GATAAAGAAGAGCAGCTCCA+GGG 0.649142 4_1:+75350472 Msa0572420:CDS
CCCTCACTCAGATCCACGAA+GGG 0.650909 4_1:+75351614 Msa0572420:CDS
GAATTTGAAAACTGATGCTG+AGG 0.656206 4_1:+75351108 Msa0572420:CDS
ACACACAGAAGTCCTCAGAA+TGG 0.656732 4_1:+75353610 Msa0572420:CDS
TGACCTGGAAGTTCAGCTTG+TGG 0.658835 4_1:+75352875 Msa0572420:CDS
AGGAAGAGGAATTAACTCTG+AGG 0.661623 4_1:+75354335 Msa0572420:CDS
GATTATTCTTCAAAGGACAG+AGG 0.677313 4_1:+75350893 Msa0572420:CDS
ATGGCAGAAGAGTTTCGTGA+AGG 0.678129 4_1:+75353800 Msa0572420:CDS
AGCTCTCCAACAGATTGGTG+AGG 0.679320 4_1:+75351279 Msa0572420:CDS
ACCCTCACTCAGATCCACGA+AGG 0.680192 4_1:+75351613 Msa0572420:CDS
TGAGATAGTCACTACACTCG+CGG 0.682863 4_1:-75354555 None:intergenic
AAGATGGTGAAACATCACTT+GGG 0.683244 4_1:+75350409 Msa0572420:exon
AAGACAGAGAAAATTTAACC+AGG 0.687147 4_1:+75352991 Msa0572420:CDS
CGTTTGTTGGAGGAACTGCA+GGG 0.687309 4_1:+75354307 Msa0572420:CDS
TCAAACTTGAAGTTGCTGAG+AGG 0.688408 4_1:+75353765 Msa0572420:CDS
ATCATATCGAAGACACGCAG+GGG 0.689585 4_1:+75354583 Msa0572420:CDS
AGACACAAATCACAAATCTG+GGG 0.699067 4_1:+75351674 Msa0572420:CDS
AGACCTGAAAAGAGACCTGG+AGG 0.702321 4_1:+75353871 Msa0572420:CDS
CTTGGGAGAGGAAAAGAGGG+AGG 0.705635 4_1:+75354498 Msa0572420:CDS
GAAACATGCTGAGAAAGACA+GGG 0.711684 4_1:+75351582 Msa0572420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+GGG - chr4_1:75349059-75349078 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr4_1:75349059-75349078 None:intergenic 0.0%
!! AACTAATATTATTATTACTT+TGG - chr4_1:75347888-75347907 None:intergenic 10.0%
!! ATTAAAAATAATCTATAAGT+TGG + chr4_1:75348142-75348161 Msa0572420:intron 10.0%
!!! TATAACAATTATCAATATTT+TGG - chr4_1:75348545-75348564 None:intergenic 10.0%
!! AAATAAAAACATTGAAATAT+GGG - chr4_1:75349196-75349215 None:intergenic 10.0%
!! AAAATAAAAACATTGAAATA+TGG - chr4_1:75349197-75349216 None:intergenic 10.0%
!! ATAATAATTTAATGAAGATA+TGG - chr4_1:75349679-75349698 None:intergenic 10.0%
!!! AATATAAACAAATTGATAAT+TGG + chr4_1:75353726-75353745 Msa0572420:CDS 10.0%
!! TGTAAACTTAATTAAACTAT+AGG + chr4_1:75347333-75347352 Msa0572420:five_prime_UTR 15.0%
!! GAAATGAAAAATTTGAAAAA+CGG - chr4_1:75347474-75347493 None:intergenic 15.0%
!! ACAATAAATAATTCAGAATA+AGG - chr4_1:75347763-75347782 None:intergenic 15.0%
!! TTTATTAATCTTGTAAAAGA+TGG + chr4_1:75347787-75347806 Msa0572420:intron 15.0%
!! TAAGAAATAAAAATCTAACA+AGG + chr4_1:75347850-75347869 Msa0572420:intron 15.0%
!!! TTATCAATATTTTGGTAAAT+TGG - chr4_1:75348537-75348556 None:intergenic 15.0%
!!! TTTTTTTTCCATTTTTTTCT+TGG + chr4_1:75348627-75348646 Msa0572420:intron 15.0%
!! AAAGATTGTATAATTATTTG+GGG - chr4_1:75349173-75349192 None:intergenic 15.0%
!! GAAAGATTGTATAATTATTT+GGG - chr4_1:75349174-75349193 None:intergenic 15.0%
!! TCTTTAGTTATCAATTATAT+AGG - chr4_1:75349443-75349462 None:intergenic 15.0%
!!! ATATAATTGATAACTAAAGA+TGG + chr4_1:75349443-75349462 Msa0572420:intron 15.0%
!! TTAACATAAGATGATATAAA+TGG - chr4_1:75350094-75350113 None:intergenic 15.0%
!!! GTAATTGTATATTTTTTGAA+TGG - chr4_1:75350145-75350164 None:intergenic 15.0%
!!! AATTATTTTTCTTTTCCTTT+AGG + chr4_1:75350218-75350237 Msa0572420:intron 15.0%
!!! AATAATAATGGAATGAAAAG+TGG - chr4_1:75347285-75347304 None:intergenic 20.0%
!!! AATATTAGTTGATAAGTTAG+CGG + chr4_1:75347898-75347917 Msa0572420:intron 20.0%
!!! ATTAAATTAGCTTAGTCAAT+TGG + chr4_1:75348264-75348283 Msa0572420:intron 20.0%
!!! AATTTTTTCCTTTTCTTTGT+AGG + chr4_1:75348427-75348446 Msa0572420:intron 20.0%
!! AAAACTTGAAGCAATATTTA+AGG + chr4_1:75348503-75348522 Msa0572420:five_prime_UTR 20.0%
!!! CGTTTCTTTCTTTTATTTTT+TGG + chr4_1:75348770-75348789 Msa0572420:intron 20.0%
!! CGTTAATTAATTAAGAGTTT+GGG + chr4_1:75348955-75348974 Msa0572420:intron 20.0%
!! AAAAAAAGGGAAGAAAAAAA+AGG - chr4_1:75349046-75349065 None:intergenic 20.0%
!! GGAAAGATTGTATAATTATT+TGG - chr4_1:75349175-75349194 None:intergenic 20.0%
!! TAATTTAATGAAGATATGGA+GGG - chr4_1:75349675-75349694 None:intergenic 20.0%
!! ATAATTTAATGAAGATATGG+AGG - chr4_1:75349676-75349695 None:intergenic 20.0%
!!! ATATAAATGGTTGAGATTTT+AGG - chr4_1:75350081-75350100 None:intergenic 20.0%
!!! TTGTATATTTTTTGAATGGA+TGG - chr4_1:75350141-75350160 None:intergenic 20.0%
!! AAAATGTAAAATAACAGTGT+AGG - chr4_1:75350181-75350200 None:intergenic 20.0%
!! GAAATTGAAGACAAATTAAA+AGG + chr4_1:75350651-75350670 Msa0572420:intron 20.0%
!!! GATACAAATATCAAAACTTT+TGG + chr4_1:75351138-75351157 Msa0572420:CDS 20.0%
!! TAAGAATCTTCAACTTAATT+TGG + chr4_1:75353178-75353197 Msa0572420:CDS 20.0%
! AATTTCATGAATGGAATCTT+TGG - chr4_1:75347216-75347235 None:intergenic 25.0%
! TCATCTTCAAATTTCATGAA+TGG - chr4_1:75347225-75347244 None:intergenic 25.0%
! AATTTGAAGATGAAAAATGC+TGG + chr4_1:75347232-75347251 Msa0572420:five_prime_UTR 25.0%
!!! ATATGGTTTTGATTTGAACT+TGG + chr4_1:75347719-75347738 Msa0572420:intron 25.0%
! GATGATAATAAAAACACCAA+AGG - chr4_1:75348343-75348362 None:intergenic 25.0%
! ACTACTATCCAAGAAAAAAA+TGG - chr4_1:75348638-75348657 None:intergenic 25.0%
! AATCCGTATAGCTTAAAATT+TGG + chr4_1:75348922-75348941 Msa0572420:intron 25.0%
! GCGTTAATTAATTAAGAGTT+TGG + chr4_1:75348954-75348973 Msa0572420:intron 25.0%
! TGGTTTAGTAACAGTAATTA+TGG + chr4_1:75348987-75349006 Msa0572420:intron 25.0%
!! TGTTTCATATGATGGAAATT+GGG - chr4_1:75349126-75349145 None:intergenic 25.0%
!! ATGTTTCATATGATGGAAAT+TGG - chr4_1:75349127-75349146 None:intergenic 25.0%
! ACTACTAATGTTTCATATGA+TGG - chr4_1:75349134-75349153 None:intergenic 25.0%
! ATGGAATACATTAAGTATCA+AGG + chr4_1:75349462-75349481 Msa0572420:intron 25.0%
!!! ATTTGTTTTGGATAGTTAGT+CGG - chr4_1:75349808-75349827 None:intergenic 25.0%
!!! TATGGTTGTTTGATTTGTTT+TGG - chr4_1:75349820-75349839 None:intergenic 25.0%
!! TTTCGTTAGTAGAGATATTT+TGG - chr4_1:75349862-75349881 None:intergenic 25.0%
! ATATCTCTACTAACGAAATA+TGG + chr4_1:75349864-75349883 Msa0572420:intron 25.0%
!!! AGTTAAGGTTTAATTTGCTT+TGG - chr4_1:75350045-75350064 None:intergenic 25.0%
!!! GAATCTGTTTTTTTACCTAA+AGG - chr4_1:75350236-75350255 None:intergenic 25.0%
! TATTTGATATTTGAGCAATG+AGG - chr4_1:75350292-75350311 None:intergenic 25.0%
!! ATCATTTGTTGATGAACATA+AGG - chr4_1:75350606-75350625 None:intergenic 25.0%
!!! AAATCAATTGGTATTGATTG+TGG - chr4_1:75350772-75350791 None:intergenic 25.0%
! GAGTTTCAAAAGATAATTGA+TGG + chr4_1:75350941-75350960 Msa0572420:CDS 25.0%
! ATCTGAATTAAGTCAGTTAA+AGG + chr4_1:75351558-75351577 Msa0572420:CDS 25.0%
! ATGAAGAAACTCAAAGATAA+TGG + chr4_1:75351862-75351881 Msa0572420:CDS 25.0%
! TGAAGAAACTCAAAGATAAT+GGG + chr4_1:75351863-75351882 Msa0572420:CDS 25.0%
!! AGATGTCAAATCTGATATTT+TGG - chr4_1:75351902-75351921 None:intergenic 25.0%
! TTGAATTTGAATTGAACACT+CGG - chr4_1:75352133-75352152 None:intergenic 25.0%
!! TTTTACAAAAGAAAGAGAAG+AGG + chr4_1:75352218-75352237 Msa0572420:CDS 25.0%
!! AGATGTCAAATCTGATATTT+TGG - chr4_1:75351902-75351921 None:intergenic 25.0%
!! TTTTACAAAAGAAAGAGAAG+CGG + chr4_1:75352218-75352237 Msa0572420:CDS 25.0%
!! AGATGTCAAATCTGATATTT+TGG - chr4_1:75351902-75351921 None:intergenic 25.0%
! ATCTCAGATAGAAAATTTGT+TGG + chr4_1:75352704-75352723 Msa0572420:CDS 25.0%
!! TAATTGGTTTAATGAATGCA+AGG + chr4_1:75353742-75353761 Msa0572420:CDS 25.0%
!!! AAAAGTGGCTTTGTTTTGTT+TGG - chr4_1:75347270-75347289 None:intergenic 30.0%
AAACTTAGAGATAGAGAGTT+AGG - chr4_1:75347401-75347420 None:intergenic 30.0%
GTTGAAAAAGAAGATGATGA+AGG - chr4_1:75347428-75347447 None:intergenic 30.0%
AAAACCATATCCAATTTCTG+CGG - chr4_1:75347709-75347728 None:intergenic 30.0%
TTCTGCTCTTTACTTTACTT+TGG + chr4_1:75347823-75347842 Msa0572420:intron 30.0%
!! ATAAGTTGGTGAAAAAGTGA+AGG + chr4_1:75348156-75348175 Msa0572420:intron 30.0%
! CTAGTATTTCTATTTGCCTT+TGG + chr4_1:75348324-75348343 Msa0572420:intron 30.0%
GCTTAATAGATTCAGAAAAG+AGG + chr4_1:75348472-75348491 Msa0572420:five_prime_UTR 30.0%
GATTCAGAAAAGAGGATATA+AGG + chr4_1:75348480-75348499 Msa0572420:five_prime_UTR 30.0%
!! AGAGTATTGAGCCTATATAT+TGG + chr4_1:75348565-75348584 Msa0572420:intron 30.0%
!! GAGTATTGAGCCTATATATT+GGG + chr4_1:75348566-75348585 Msa0572420:intron 30.0%
! AGTATTGAGCCTATATATTG+GGG + chr4_1:75348567-75348586 Msa0572420:intron 30.0%
TAACATCATCCCCAATATAT+AGG - chr4_1:75348579-75348598 None:intergenic 30.0%
!!! CAAGATGCAACTTTTTTTGA+AGG - chr4_1:75348833-75348852 None:intergenic 30.0%
! GGTCCAAATTTTAAGCTATA+CGG - chr4_1:75348928-75348947 None:intergenic 30.0%
TTAATTAATTAACGCACCAC+TGG - chr4_1:75348949-75348968 None:intergenic 30.0%
ACTGTTACTAAACCAAAATG+TGG - chr4_1:75348982-75349001 None:intergenic 30.0%
TGTCAAAAAGATACTAGATG+CGG - chr4_1:75349016-75349035 None:intergenic 30.0%
GGATTATATGTGATTAACTG+GGG - chr4_1:75349094-75349113 None:intergenic 30.0%
CGGATTATATGTGATTAACT+GGG - chr4_1:75349095-75349114 None:intergenic 30.0%
! ACGGATTATATGTGATTAAC+TGG - chr4_1:75349096-75349115 None:intergenic 30.0%
AGATAGCAAACAATACAAAG+AGG + chr4_1:75349296-75349315 Msa0572420:intron 30.0%
!! TCATGATTGTTTGGTTTGAT+TGG - chr4_1:75349339-75349358 None:intergenic 30.0%
!! TCAATTATATAGGCTCTGAA+GGG - chr4_1:75349433-75349452 None:intergenic 30.0%
! ATCAATTATATAGGCTCTGA+AGG - chr4_1:75349434-75349453 None:intergenic 30.0%
! AATTGGAGTTTTCATTATGC+AGG - chr4_1:75349764-75349783 None:intergenic 30.0%
AATGTTTGTTCAGTCTGAAT+TGG - chr4_1:75349781-75349800 None:intergenic 30.0%
AATTAAGAACCTGAGAGTTA+TGG - chr4_1:75349838-75349857 None:intergenic 30.0%
CAGATTAGATGATGTTATGT+TGG - chr4_1:75349988-75350007 None:intergenic 30.0%
AAAGAGCTATCTTAAGATCA+TGG - chr4_1:75350014-75350033 None:intergenic 30.0%
! CTTAAGATAGCTCTTTTGAT+AGG + chr4_1:75350018-75350037 Msa0572420:intron 30.0%
ACTTGATATTGCTAAGAAGT+TGG + chr4_1:75350374-75350393 Msa0572420:five_prime_UTR 30.0%
GAGTTAAAGAAAAGGATCAA+AGG + chr4_1:75350818-75350837 Msa0572420:CDS 30.0%
ATTAAAGCAAGAACTTGAAG+TGG + chr4_1:75350964-75350983 Msa0572420:CDS 30.0%
TACTGAACTAAATAAGCAAC+TGG + chr4_1:75351168-75351187 Msa0572420:CDS 30.0%
AGCTGAATTGAGTCAAAAAT+TGG + chr4_1:75351210-75351229 Msa0572420:CDS 30.0%
TGAATTGAGTCAAAAATTGG+AGG + chr4_1:75351213-75351232 Msa0572420:CDS 30.0%
AAACCTAGTTGATCAATTGA+AGG + chr4_1:75351327-75351346 Msa0572420:CDS 30.0%
GCAAAACGAGAAAAAAGATA+TGG + chr4_1:75351714-75351733 Msa0572420:CDS 30.0%
AAACGAGAAAAAAGATATGG+AGG + chr4_1:75351717-75351736 Msa0572420:CDS 30.0%
GAAGAAACTCAAAGATAATG+GGG + chr4_1:75351864-75351883 Msa0572420:CDS 30.0%
TCAAATTCAAAGTCTGAAAG+AGG + chr4_1:75352143-75352162 Msa0572420:CDS 30.0%
ATCTCAGATAGACAATTTGT+TGG + chr4_1:75352311-75352330 Msa0572420:CDS 30.0%
TCAAATTCAAAGTCTGAAAG+AGG + chr4_1:75352143-75352162 Msa0572420:CDS 30.0%
ATATTAGCTCATTACATGCT+CGG + chr4_1:75352337-75352356 Msa0572420:CDS 30.0%
CTGAATTTGAATTGAACACT+CGG - chr4_1:75352919-75352938 None:intergenic 30.0%
AAGACAGAGAAAATTTAACC+AGG + chr4_1:75352991-75353010 Msa0572420:CDS 30.0%
TCTCCAGGATAAAATTCATA+TGG + chr4_1:75353109-75353128 Msa0572420:CDS 30.0%
!! ATTCTTAATTTGCTCACCAA+AGG - chr4_1:75353165-75353184 None:intergenic 30.0%
AGCAGACAAAATAGATCATT+CGG + chr4_1:75353400-75353419 Msa0572420:CDS 30.0%
GCTTCAGGATAAACTTTATA+AGG + chr4_1:75353460-75353479 Msa0572420:CDS 30.0%
!! TCAAGTTGACAATCTGAAAA+AGG + chr4_1:75353523-75353542 Msa0572420:CDS 30.0%
!!! TTCTTCTTTTGTTTTCTGCA+AGG - chr4_1:75353558-75353577 None:intergenic 30.0%
GCAGAAAACAAAAGAAGAAT+TGG + chr4_1:75353559-75353578 Msa0572420:CDS 30.0%
TGAATTAGCCAACAAAAACA+TGG + chr4_1:75353649-75353668 Msa0572420:CDS 30.0%
AGAACAATTGCTAAGTGAAA+AGG + chr4_1:75353982-75354001 Msa0572420:CDS 30.0%
!! AAAGGAAGATAGCTTTAGAA+AGG + chr4_1:75354000-75354019 Msa0572420:CDS 30.0%
ATGAAAAGCTTCATTGTTAG+CGG - chr4_1:75354095-75354114 None:intergenic 30.0%
!! CTCATGATTTTTGCTTTTGT+CGG - chr4_1:75354191-75354210 None:intergenic 30.0%
TGTTGTTGAACTTAAGAAGA+CGG + chr4_1:75354426-75354445 Msa0572420:CDS 30.0%
!!! TTCTTTTTCAACTCTCACAG+AGG + chr4_1:75347436-75347455 Msa0572420:five_prime_UTR 35.0%
!! AGCTCTTTAGTTTCAGCTTT+TGG + chr4_1:75347567-75347586 Msa0572420:five_prime_UTR 35.0%
TTTGTATACTCCGCAGAAAT+TGG + chr4_1:75347696-75347715 Msa0572420:intron 35.0%
CAGAATAAGGATCAAGATAC+AGG - chr4_1:75347750-75347769 None:intergenic 35.0%
AGCGGAAAAACTTATACTAG+TGG + chr4_1:75347916-75347935 Msa0572420:intron 35.0%
ATATACTGATACTGAGTAGC+AGG - chr4_1:75348303-75348322 None:intergenic 35.0%
ATTCTTGAAAGTTGTTGTCG+TGG + chr4_1:75348708-75348727 Msa0572420:intron 35.0%
CACGATTCTATTACTGAGAA+CGG - chr4_1:75348862-75348881 None:intergenic 35.0%
TAGCTTAAAATTTGGACCAG+TGG + chr4_1:75348930-75348949 Msa0572420:intron 35.0%
ATGGAAATTGGGTTCAGTTA+CGG - chr4_1:75349115-75349134 None:intergenic 35.0%
! ATTTGGGGTTTATTCGAACA+AGG - chr4_1:75349158-75349177 None:intergenic 35.0%
TTAAAAAACTCCACATGCAC+AGG + chr4_1:75349258-75349277 Msa0572420:intron 35.0%
AGGTTGTGTTCATGATTGTT+TGG - chr4_1:75349348-75349367 None:intergenic 35.0%
!! CAATTATATAGGCTCTGAAG+GGG - chr4_1:75349432-75349451 None:intergenic 35.0%
ATTAGAATGCTATGAGGCTT+GGG - chr4_1:75349513-75349532 None:intergenic 35.0%
CAACAGATTAGAATGCTATG+AGG - chr4_1:75349519-75349538 None:intergenic 35.0%
!! GTTATACTTGGCTTGCAAAA+TGG - chr4_1:75349557-75349576 None:intergenic 35.0%
! TGCAGTATAGGTGTTATACT+TGG - chr4_1:75349569-75349588 None:intergenic 35.0%
TTTCCTAAAGTGAAGTACAC+TGG - chr4_1:75349628-75349647 None:intergenic 35.0%
! TTCACTTTAGGAAACCAAAC+AGG + chr4_1:75349634-75349653 Msa0572420:intron 35.0%
!! ATATGGAGGGATTGTTGTTT+GGG - chr4_1:75349662-75349681 None:intergenic 35.0%
GTGGAGAAAACATGTATCAT+CGG - chr4_1:75349704-75349723 None:intergenic 35.0%
!! TTCATTATGCAGGTTGGTTT+GGG - chr4_1:75349754-75349773 None:intergenic 35.0%
!! TTTCATTATGCAGGTTGGTT+TGG - chr4_1:75349755-75349774 None:intergenic 35.0%
ATCAAACAACCATAACTCTC+AGG + chr4_1:75349826-75349845 Msa0572420:intron 35.0%
AGCTATATGGATAGAAGTGA+GGG - chr4_1:75349906-75349925 None:intergenic 35.0%
! ATTTTCAGCTTTTCACTTCC+TGG + chr4_1:75350323-75350342 Msa0572420:intron 35.0%
AAGATGGTGAAACATCACTT+GGG + chr4_1:75350409-75350428 Msa0572420:exon 35.0%
ATATCATTTCAGCTGTCATG+GGG - chr4_1:75350538-75350557 None:intergenic 35.0%
GATATCATTTCAGCTGTCAT+GGG - chr4_1:75350539-75350558 None:intergenic 35.0%
TGATATCATTTCAGCTGTCA+TGG - chr4_1:75350540-75350559 None:intergenic 35.0%
TGACAGCTGAAATGATATCA+TGG + chr4_1:75350540-75350559 Msa0572420:intron 35.0%
TGATATCATGGAAGATCACT+AGG + chr4_1:75350552-75350571 Msa0572420:intron 35.0%
TAAAGATGACAACCTTGAAG+AGG + chr4_1:75350688-75350707 Msa0572420:intron 35.0%
!! CTCAGCAGAAATTTTGAAGA+GGG + chr4_1:75350718-75350737 Msa0572420:CDS 35.0%
CATGCTGTGTGTAAATCAAT+TGG - chr4_1:75350784-75350803 None:intergenic 35.0%
TGACAGGTGAGTTAAAGAAA+AGG + chr4_1:75350810-75350829 Msa0572420:CDS 35.0%
GGATTCGGATTATTCTTCAA+AGG + chr4_1:75350886-75350905 Msa0572420:CDS 35.0%
GATTATTCTTCAAAGGACAG+AGG + chr4_1:75350893-75350912 Msa0572420:CDS 35.0%
GAATTTGAAAACTGATGCTG+AGG + chr4_1:75351108-75351127 Msa0572420:CDS 35.0%
GAAGACAGAAAACAATAGCT+TGG + chr4_1:75351240-75351259 Msa0572420:CDS 35.0%
ATTGATCAACTAGGTTTCTC+AGG - chr4_1:75351324-75351343 None:intergenic 35.0%
CATCCTTCAATTGATCAACT+AGG - chr4_1:75351333-75351352 None:intergenic 35.0%
TGATAAGTCAGTGATTGCAA+AGG + chr4_1:75351351-75351370 Msa0572420:CDS 35.0%
AACAACAATAAGCCACAATC+TGG + chr4_1:75351441-75351460 Msa0572420:CDS 35.0%
ATGAGTCCTCAAATCTTATC+AGG + chr4_1:75351644-75351663 Msa0572420:CDS 35.0%
TGAGTCCTCAAATCTTATCA+GGG + chr4_1:75351645-75351664 Msa0572420:CDS 35.0%
TAGTTCCCTGATAAGATTTG+AGG - chr4_1:75351653-75351672 None:intergenic 35.0%
AGAGACACAAATCACAAATC+TGG + chr4_1:75351672-75351691 Msa0572420:CDS 35.0%
GAGACACAAATCACAAATCT+GGG + chr4_1:75351673-75351692 Msa0572420:CDS 35.0%
AGACACAAATCACAAATCTG+GGG + chr4_1:75351674-75351693 Msa0572420:CDS 35.0%
!!! TTCCAGTTCTCTTTTTTCAG+TGG - chr4_1:75351761-75351780 None:intergenic 35.0%
TAGTTCCTCTTCTCTTTCTT+TGG - chr4_1:75351833-75351852 None:intergenic 35.0%
! TTGAACACTCGGAATTTTCT+TGG - chr4_1:75352122-75352141 None:intergenic 35.0%
AATTCAAAGTCTGAAAGAGG+AGG + chr4_1:75352146-75352165 Msa0572420:CDS 35.0%
TATAAGTCTCTCTTGTTCCA+GGG - chr4_1:75352184-75352203 None:intergenic 35.0%
ACATGCTCAGAAAAATGAAC+TGG + chr4_1:75352350-75352369 Msa0572420:CDS 35.0%
! AATGCTTTCGACTTGATTTG+AGG - chr4_1:75352406-75352425 None:intergenic 35.0%
!! TTGAACACTCTGAAGTTTCT+TGG - chr4_1:75352515-75352534 None:intergenic 35.0%
AATTCAAAGTCTGAAAGAGG+AGG + chr4_1:75352146-75352165 Msa0572420:CDS 35.0%
! TTGAACACTCGGAATTTTCT+TGG - chr4_1:75352122-75352141 None:intergenic 35.0%
TCAAATTCAGAGTCTGAAAG+AGG + chr4_1:75352929-75352948 Msa0572420:CDS 35.0%
GCAAAGATGAAGAGCAAATA+AGG + chr4_1:75353063-75353082 Msa0572420:CDS 35.0%
! CTGCCATATGAATTTTATCC+TGG - chr4_1:75353115-75353134 None:intergenic 35.0%
ATTCATATGGCAGAGATAGA+AGG + chr4_1:75353122-75353141 Msa0572420:CDS 35.0%
! TCTTCAACTTAATTTGGCAC+AGG + chr4_1:75353184-75353203 Msa0572420:CDS 35.0%
TAAACTGGCACAGGAAAATT+TGG + chr4_1:75353373-75353392 Msa0572420:CDS 35.0%
AAAATAGATCATTCGGAGAG+AGG + chr4_1:75353407-75353426 Msa0572420:CDS 35.0%
GGATAAACTTTATAAGGCAG+AGG + chr4_1:75353466-75353485 Msa0572420:CDS 35.0%
TTTCATTGTCAACCATTCTG+AGG - chr4_1:75353625-75353644 None:intergenic 35.0%
!! CTGAAGATCCATGTTTTTGT+TGG - chr4_1:75353660-75353679 None:intergenic 35.0%
TGAGAGGAAAATGGAAGAAA+TGG + chr4_1:75353781-75353800 Msa0572420:CDS 35.0%
AGATCAGATGGTAACTGATT+TGG + chr4_1:75353835-75353854 Msa0572420:CDS 35.0%
TTAGCAATTGTTCTGTAACC+CGG - chr4_1:75353976-75353995 None:intergenic 35.0%
AATCTGTCAGTGAGATGAAT+AGG + chr4_1:75354254-75354273 Msa0572420:CDS 35.0%
ATCTGTCAGTGAGATGAATA+GGG + chr4_1:75354255-75354274 Msa0572420:CDS 35.0%
GAGAGATAAAGATCGTTTGT+TGG + chr4_1:75354294-75354313 Msa0572420:CDS 35.0%
! AGATAAAGATCGTTTGTTGG+AGG + chr4_1:75354297-75354316 Msa0572420:CDS 35.0%
!! GAAGTTGATGAAAGAGAAAG+AGG + chr4_1:75354462-75354481 Msa0572420:CDS 35.0%
TTGATGAAAGAGAAAGAGGA+AGG + chr4_1:75354466-75354485 Msa0572420:CDS 35.0%
AGAGATAGAGAGTTAGGAAG+AGG - chr4_1:75347395-75347414 None:intergenic 40.0%
TGAAGTGAAAACGCAGAAGA+AGG - chr4_1:75347496-75347515 None:intergenic 40.0%
TACTCCGCAGAAATTGGATA+TGG + chr4_1:75347702-75347721 Msa0572420:intron 40.0%
TGCAGCAACCTACAAAGAAA+AGG - chr4_1:75348438-75348457 None:intergenic 40.0%
!! AAGAGTTTGGGACCACATTT+TGG + chr4_1:75348967-75348986 Msa0572420:intron 40.0%
GATTAGAATGCTATGAGGCT+TGG - chr4_1:75349514-75349533 None:intergenic 40.0%
CTATTGGATGGTTGCAGTAT+AGG - chr4_1:75349581-75349600 None:intergenic 40.0%
ATACTGCAACCATCCAATAG+AGG + chr4_1:75349581-75349600 Msa0572420:intron 40.0%
CTAAAGTGAAGTACACTGGT+TGG - chr4_1:75349624-75349643 None:intergenic 40.0%
CAACCAGTGTACTTCACTTT+AGG + chr4_1:75349622-75349641 Msa0572420:intron 40.0%
! GATATGGAGGGATTGTTGTT+TGG - chr4_1:75349663-75349682 None:intergenic 40.0%
! GGAGTTTTCATTATGCAGGT+TGG - chr4_1:75349760-75349779 None:intergenic 40.0%
CAGCTATATGGATAGAAGTG+AGG - chr4_1:75349907-75349926 None:intergenic 40.0%
!! AGGTGTTGTTTGCAGCTATA+TGG - chr4_1:75349919-75349938 None:intergenic 40.0%
TAATTGGGAAGGCTGTATCA+AGG - chr4_1:75349939-75349958 None:intergenic 40.0%
AACCTTAACTGAGATGATGC+AGG + chr4_1:75350055-75350074 Msa0572420:intron 40.0%
TTCACTTCCTGGAATCTACA+TGG + chr4_1:75350334-75350353 Msa0572420:five_prime_UTR 40.0%
TTGTTCACCATGTAGATTCC+AGG - chr4_1:75350344-75350363 None:intergenic 40.0%
GCTAAGAAGTTGGATATCAG+TGG + chr4_1:75350384-75350403 Msa0572420:five_prime_UTR 40.0%
TTGGATATCAGTGGAGAAGA+TGG + chr4_1:75350393-75350412 Msa0572420:exon 40.0%
GAAGATGGTGAAACATCACT+TGG + chr4_1:75350408-75350427 Msa0572420:exon 40.0%
CCTCTTCAAAATTTCTGCTG+AGG - chr4_1:75350720-75350739 None:intergenic 40.0%
!! CCTCAGCAGAAATTTTGAAG+AGG + chr4_1:75350717-75350736 Msa0572420:CDS 40.0%
TCCTCAATCAATTCAGCAAG+CGG - chr4_1:75350746-75350765 None:intergenic 40.0%
ATCAAAGGCAAGCGAGAAAA+AGG + chr4_1:75350833-75350852 Msa0572420:CDS 40.0%
! ATCCAGCTCTGATTCAGATT+CGG + chr4_1:75350865-75350884 Msa0572420:CDS 40.0%
CTCTGATTCAGATTCGGATT+CGG + chr4_1:75350871-75350890 Msa0572420:CDS 40.0%
GACAGTTACACATGAAGAGA+AGG + chr4_1:75351021-75351040 Msa0572420:CDS 40.0%
CTTGTCTGCTTCTTGTATCT+TGG - chr4_1:75351080-75351099 None:intergenic 40.0%
CAAGATACAAGAAGCAGACA+AGG + chr4_1:75351078-75351097 Msa0572420:CDS 40.0%
AATAAGCAACTGGACATTGC+TGG + chr4_1:75351178-75351197 Msa0572420:CDS 40.0%
AGAAAACAATAGCTTGGCCA+TGG + chr4_1:75351246-75351265 Msa0572420:CDS 40.0%
AACAATAAGCCACAATCTGG+AGG + chr4_1:75351444-75351463 Msa0572420:CDS 40.0%
AGAAACATGCTGAGAAAGAC+AGG + chr4_1:75351581-75351600 Msa0572420:CDS 40.0%
GAAACATGCTGAGAAAGACA+GGG + chr4_1:75351582-75351601 Msa0572420:CDS 40.0%
ACAAATCACAAATCTGGGGA+TGG + chr4_1:75351678-75351697 Msa0572420:CDS 40.0%
CACCACTGAAAAAAGAGAAC+TGG + chr4_1:75351756-75351775 Msa0572420:CDS 40.0%
GAAGTCCAAAGAAAGAGAAG+AGG + chr4_1:75351825-75351844 Msa0572420:CDS 40.0%
ACATGCTCAGAAAACTGAAC+TGG + chr4_1:75351957-75351976 Msa0572420:CDS 40.0%
! AATGCTTTCAACTCGAGTTG+AGG - chr4_1:75352013-75352032 None:intergenic 40.0%
ACAACACCAGAAATCTGACT+TGG + chr4_1:75352074-75352093 Msa0572420:CDS 40.0%
GAACTTCCAAGTCAGATTTC+TGG - chr4_1:75352083-75352102 None:intergenic 40.0%
CTATAAGTCTCTCTTGTTCC+AGG - chr4_1:75352185-75352204 None:intergenic 40.0%
ACAACACCAGAAATCTGACT+TGG + chr4_1:75352074-75352093 Msa0572420:CDS 40.0%
GAACTTCCAAGTCAGATTTC+TGG - chr4_1:75352083-75352102 None:intergenic 40.0%
CATAAGTCTCTCTTGATCCA+GGG - chr4_1:75352577-75352596 None:intergenic 40.0%
ACATGCTCGGAAAAATGAAC+TGG + chr4_1:75352743-75352762 Msa0572420:CDS 40.0%
AATTCAGAGTCTGAAAGAGG+AGG + chr4_1:75352932-75352951 Msa0572420:CDS 40.0%
CATAAGTCTCTCTTGTTCCA+GGG - chr4_1:75352970-75352989 None:intergenic 40.0%
AACCAGGCAGATAAAGAATC+TGG + chr4_1:75353007-75353026 Msa0572420:CDS 40.0%
TTCCAGATTCTTTATCTGCC+TGG - chr4_1:75353012-75353031 None:intergenic 40.0%
! GCAGATAAAGAATCTGGAAC+TGG + chr4_1:75353013-75353032 Msa0572420:CDS 40.0%
ATGATTGATCACTTGGACGT+TGG - chr4_1:75353090-75353109 None:intergenic 40.0%
TCAACCCAAATAGTTGCCTT+TGG + chr4_1:75353146-75353165 Msa0572420:CDS 40.0%
CTCACCAAAGGCAACTATTT+GGG - chr4_1:75353153-75353172 None:intergenic 40.0%
CAAAAAAATGGAGTTGGAGC+TGG + chr4_1:75353223-75353242 Msa0572420:CDS 40.0%
CCAGTTTACTGATCTCATCT+CGG - chr4_1:75353361-75353380 None:intergenic 40.0%
ACTTTATAAGGCAGAGGAAG+AGG + chr4_1:75353472-75353491 Msa0572420:CDS 40.0%
ATTGTCAACTTGAGCTGTGA+AGG - chr4_1:75353516-75353535 None:intergenic 40.0%
CATGGATCTTCAGAGAACAT+TGG + chr4_1:75353667-75353686 Msa0572420:CDS 40.0%
TCAAACTTGAAGTTGCTGAG+AGG + chr4_1:75353765-75353784 Msa0572420:CDS 40.0%
TGAAGTTGCTGAGAGGAAAA+TGG + chr4_1:75353772-75353791 Msa0572420:CDS 40.0%
!! AAGAGTTTCGTGAAGGCATT+GGG + chr4_1:75353807-75353826 Msa0572420:CDS 40.0%
CATTGGGTCAAAAGATCAGA+TGG + chr4_1:75353823-75353842 Msa0572420:CDS 40.0%
! GCACTTTGTTTGAGAATGTC+AGG + chr4_1:75353912-75353931 Msa0572420:CDS 40.0%
TGAGAATGTCAGGAATCTTG+AGG + chr4_1:75353922-75353941 Msa0572420:CDS 40.0%
!! GGAAGATAGCTTTAGAAAGG+CGG + chr4_1:75354003-75354022 Msa0572420:CDS 40.0%
TTCAGAGAGAACTTGAAGAC+AGG + chr4_1:75354044-75354063 Msa0572420:CDS 40.0%
TGTGTCAACAGTGTGATATC+TGG + chr4_1:75354139-75354158 Msa0572420:CDS 40.0%
GTGTCAACAGTGTGATATCT+GGG + chr4_1:75354140-75354159 Msa0572420:CDS 40.0%
! TTTTGCAACCTGAAGCTCAT+GGG - chr4_1:75354233-75354252 None:intergenic 40.0%
AGTGAGATGAATAGGGTGAA+GGG + chr4_1:75354262-75354281 Msa0572420:CDS 40.0%
AGGAAGAGGAATTAACTCTG+AGG + chr4_1:75354335-75354354 Msa0572420:CDS 40.0%
GGAAGAGGAATTAACTCTGA+GGG + chr4_1:75354336-75354355 Msa0572420:CDS 40.0%
! GGAATTAACTCTGAGGGAAA+AGG + chr4_1:75354342-75354361 Msa0572420:CDS 40.0%
TGAACTTAAGAAGACGGTTG+AGG + chr4_1:75354432-75354451 Msa0572420:CDS 40.0%
AAATCATATCGAAGACACGC+AGG + chr4_1:75354581-75354600 Msa0572420:CDS 40.0%
AATCATATCGAAGACACGCA+GGG + chr4_1:75354582-75354601 Msa0572420:CDS 40.0%
CTTGAAAGTTGTTGTCGTGG+CGG + chr4_1:75348711-75348730 Msa0572420:intron 45.0%
CTGTAGCTGAGTTGTAGTCT+TGG + chr4_1:75348738-75348757 Msa0572420:intron 45.0%
TAGCGCAAACACATGTTGCA+GGG - chr4_1:75349220-75349239 None:intergenic 45.0%
ATAGCGCAAACACATGTTGC+AGG - chr4_1:75349221-75349240 None:intergenic 45.0%
! AGTTTGGCAGTGTGGCTTTT+AGG - chr4_1:75349368-75349387 None:intergenic 45.0%
GGTTGATTGCCTCTATTGGA+TGG - chr4_1:75349593-75349612 None:intergenic 45.0%
! GAGAGGTTGATTGCCTCTAT+TGG - chr4_1:75349597-75349616 None:intergenic 45.0%
!! TTGTTGTTTGGGCTCCTGTT+TGG - chr4_1:75349651-75349670 None:intergenic 45.0%
! GTAGAGGCGTAATTCTTGTG+TGG - chr4_1:75349723-75349742 None:intergenic 45.0%
CTGGCTGGAAATAATTGGGA+AGG - chr4_1:75349950-75349969 None:intergenic 45.0%
!! CGTGCTGGCTGGAAATAATT+GGG - chr4_1:75349954-75349973 None:intergenic 45.0%
!! TCGTGCTGGCTGGAAATAAT+TGG - chr4_1:75349955-75349974 None:intergenic 45.0%
GGAGCTGCTCTTCTTTATCA+GGG - chr4_1:75350471-75350490 None:intergenic 45.0%
TGGAGCTGCTCTTCTTTATC+AGG - chr4_1:75350472-75350491 None:intergenic 45.0%
TGATAAAGAAGAGCAGCTCC+AGG + chr4_1:75350471-75350490 Msa0572420:CDS 45.0%
GATAAAGAAGAGCAGCTCCA+GGG + chr4_1:75350472-75350491 Msa0572420:CDS 45.0%
GATGACAACCTTGAAGAGGA+TGG + chr4_1:75350692-75350711 Msa0572420:intron 45.0%
! ACCGCTTGCTGAATTGATTG+AGG + chr4_1:75350742-75350761 Msa0572420:CDS 45.0%
ACACAGCATGATCATCTGAC+AGG + chr4_1:75350794-75350813 Msa0572420:CDS 45.0%
ATCCGAATCTGAATCAGAGC+TGG - chr4_1:75350870-75350889 None:intergenic 45.0%
AAGGACAGAGGCAGCAAAAA+TGG + chr4_1:75350905-75350924 Msa0572420:CDS 45.0%
AGAACTTGAAGTGGCGCATA+AGG + chr4_1:75350973-75350992 Msa0572420:CDS 45.0%
GTATCTTGGTCAATGCTGCA+AGG - chr4_1:75351066-75351085 None:intergenic 45.0%
TCCAACAGATTGGTGAGGAA+AGG + chr4_1:75351284-75351303 Msa0572420:CDS 45.0%
TCCTTTCCTCACCAATCTGT+TGG - chr4_1:75351288-75351307 None:intergenic 45.0%
GCTGTCTCAGAACAGAATAC+AGG + chr4_1:75351528-75351547 Msa0572420:CDS 45.0%
ACTCATTCTTATGCCCTTCG+TGG - chr4_1:75351630-75351649 None:intergenic 45.0%
! GAACTGGAAGAGCGCAATTT+AGG + chr4_1:75351772-75351791 Msa0572420:CDS 45.0%
TGAGCTGAATGTATTGCAGC+AGG + chr4_1:75352038-75352057 Msa0572420:CDS 45.0%
GAATGTATTGCAGCAGGAAG+TGG + chr4_1:75352044-75352063 Msa0572420:CDS 45.0%
! TGACTTGGAAGTTCAGCTTG+TGG + chr4_1:75352089-75352108 Msa0572420:CDS 45.0%
TGAGCTGAATGTATTGCAGC+AGG + chr4_1:75352038-75352057 Msa0572420:CDS 45.0%
GAATGTATTGCAGCAGGAAG+TGG + chr4_1:75352044-75352063 Msa0572420:CDS 45.0%
! TGACTTGGAAGTTCAGCTTG+TGG + chr4_1:75352089-75352108 Msa0572420:CDS 45.0%
CAAAGTCTGAAAGAGGAGGT+TGG + chr4_1:75352150-75352169 Msa0572420:CDS 45.0%
CCATAAGTCTCTCTTGATCC+AGG - chr4_1:75352578-75352597 None:intergenic 45.0%
CCTGGATCAAGAGAGACTTA+TGG + chr4_1:75352575-75352594 Msa0572420:CDS 45.0%
! AATGCTTTCGACTCGAGTTG+AGG - chr4_1:75352799-75352818 None:intergenic 45.0%
TGAGCTGAATGTATTGCAGC+AGG + chr4_1:75352038-75352057 Msa0572420:CDS 45.0%
GAATGTATTGCAGCAGGAAG+TGG + chr4_1:75352044-75352063 Msa0572420:CDS 45.0%
ACAACACCAGAAATCTGACC+TGG + chr4_1:75352860-75352879 Msa0572420:CDS 45.0%
GAACTTCCAGGTCAGATTTC+TGG - chr4_1:75352869-75352888 None:intergenic 45.0%
TTTCCACAAGCTGAACTTCC+AGG - chr4_1:75352095-75352114 None:intergenic 45.0%
CCATAAGTCTCTCTTGTTCC+AGG - chr4_1:75352971-75352990 None:intergenic 45.0%
CCTGGAACAAGAGAGACTTA+TGG + chr4_1:75352182-75352201 Msa0572420:CDS 45.0%
CCTGGAGATGATTGATCACT+TGG - chr4_1:75353097-75353116 None:intergenic 45.0%
CCAAGTGATCAATCATCTCC+AGG + chr4_1:75353094-75353113 Msa0572420:CDS 45.0%
GCTCACCAAAGGCAACTATT+TGG - chr4_1:75353154-75353173 None:intergenic 45.0%
GCAGCGCAAAAAAATGGAGT+TGG + chr4_1:75353217-75353236 Msa0572420:CDS 45.0%
GCTCTTCAACTTCACTCTTC+TGG - chr4_1:75353262-75353281 None:intergenic 45.0%
CCGAGATGAGATCAGTAAAC+TGG + chr4_1:75353358-75353377 Msa0572420:CDS 45.0%
TGAGATCAGTAAACTGGCAC+AGG + chr4_1:75353364-75353383 Msa0572420:CDS 45.0%
! ATTTGAGTTCTCTGCGCTTC+AGG + chr4_1:75353445-75353464 Msa0572420:CDS 45.0%
ACACACAGAAGTCCTCAGAA+TGG + chr4_1:75353610-75353629 Msa0572420:CDS 45.0%
ATGGCAGAAGAGTTTCGTGA+AGG + chr4_1:75353800-75353819 Msa0572420:CDS 45.0%
! GAAGAGTTTCGTGAAGGCAT+TGG + chr4_1:75353806-75353825 Msa0572420:CDS 45.0%
TGAAGACCTGAAAAGAGACC+TGG + chr4_1:75353868-75353887 Msa0572420:CDS 45.0%
AAAAGAGACCTGGAGGAGAA+AGG + chr4_1:75353878-75353897 Msa0572420:CDS 45.0%
TGAAGACAGGATTGCTACTC+TGG + chr4_1:75354057-75354076 Msa0572420:CDS 45.0%
AAACATCTCCCATGAGCTTC+AGG + chr4_1:75354222-75354241 Msa0572420:CDS 45.0%
! CTTTTGCAACCTGAAGCTCA+TGG - chr4_1:75354234-75354253 None:intergenic 45.0%
CAGTGAGATGAATAGGGTGA+AGG + chr4_1:75354261-75354280 Msa0572420:CDS 45.0%
GTGAGATGAATAGGGTGAAG+GGG + chr4_1:75354263-75354282 Msa0572420:CDS 45.0%
ACTGCAGGGTAAAAAGGAAG+AGG + chr4_1:75354321-75354340 Msa0572420:CDS 45.0%
GGAAAAGGTTGAGAAGCTAG+AGG + chr4_1:75354357-75354376 Msa0572420:CDS 45.0%
! AGAGAAAGAGGAAGGCATGT+TGG + chr4_1:75354474-75354493 Msa0572420:CDS 45.0%
TGAGATAGTCACTACACTCG+CGG - chr4_1:75354558-75354577 None:intergenic 45.0%
CGAGTGTAGTGACTATCTCA+AGG + chr4_1:75354558-75354577 Msa0572420:CDS 45.0%
ATCATATCGAAGACACGCAG+GGG + chr4_1:75354583-75354602 Msa0572420:CDS 45.0%
!!! TTTTTGTAAAATAATAATAA+TGG - chr4_1:75347297-75347316 None:intergenic 5.0%
!!! TTTTTTTTTTTTTGTATTTT+AGG + chr4_1:75349067-75349086 Msa0572420:intron 5.0%
!!! TTTTTTTTTTTTGTATTTTA+GGG + chr4_1:75349068-75349087 Msa0572420:intron 5.0%
TTGTGCACATCCTGTGCATG+TGG - chr4_1:75349271-75349290 None:intergenic 50.0%
ATGCACAGGATGTGCACAAG+TGG + chr4_1:75349272-75349291 Msa0572420:intron 50.0%
CTGCCAAACTGTGCAGGAAT+TGG + chr4_1:75349378-75349397 Msa0572420:intron 50.0%
GTGCCAATTCCTGCACAGTT+TGG - chr4_1:75349384-75349403 None:intergenic 50.0%
! GTACACTGGTTGGTTGTGAG+AGG - chr4_1:75349614-75349633 None:intergenic 50.0%
GGTTTGGGAGATTGCAGTAG+AGG - chr4_1:75349739-75349758 None:intergenic 50.0%
TTGGTTGTGTCTCATCGTGC+TGG - chr4_1:75349969-75349988 None:intergenic 50.0%
GGCCTGCATCATCTCAGTTA+AGG - chr4_1:75350060-75350079 None:intergenic 50.0%
!!! TCGTACCTGTTTTAGCTCCC+TGG - chr4_1:75350492-75350511 None:intergenic 50.0%
CATGGGGCAGAGTGTAATTG+TGG - chr4_1:75350522-75350541 None:intergenic 50.0%
! CTGAGGTACCATCCTCTTCA+AGG - chr4_1:75350703-75350722 None:intergenic 50.0%
GAGAGCTGTCTCTTTCTCCA+TGG - chr4_1:75351266-75351285 None:intergenic 50.0%
GAGACAGCTCTCCAACAGAT+TGG + chr4_1:75351274-75351293 Msa0572420:CDS 50.0%
AGCTCTCCAACAGATTGGTG+AGG + chr4_1:75351279-75351298 Msa0572420:CDS 50.0%
CCTCTGTAACCTCCAGATTG+TGG - chr4_1:75351456-75351475 None:intergenic 50.0%
CCACAATCTGGAGGTTACAG+AGG + chr4_1:75351453-75351472 Msa0572420:CDS 50.0%
GGAGGTTGACAGAAAATCCC+TGG + chr4_1:75352164-75352183 Msa0572420:CDS 50.0%
TGACCTGGAAGTTCAGCTTG+TGG + chr4_1:75352875-75352894 Msa0572420:CDS 50.0%
GGAGGTTGACAGAAAATCCC+TGG + chr4_1:75352164-75352183 Msa0572420:CDS 50.0%
AGCGCAGCAGCGCAAAAAAA+TGG + chr4_1:75353211-75353230 Msa0572420:CDS 50.0%
! TTCACTCTTCTGGCTGCGTA+TGG - chr4_1:75353252-75353271 None:intergenic 50.0%
!! GCTCTAAAGTGTCCAACTCG+CGG - chr4_1:75353301-75353320 None:intergenic 50.0%
AGACCTGAAAAGAGACCTGG+AGG + chr4_1:75353871-75353890 Msa0572420:CDS 50.0%
! TCTCCTCCAGGTCTCTTTTC+AGG - chr4_1:75353877-75353896 None:intergenic 50.0%
CTTCATCTCCTTTCTCCTCC+AGG - chr4_1:75353889-75353908 None:intergenic 50.0%
GCCTGTCAAACCAAAAGCTC+CGG + chr4_1:75353954-75353973 Msa0572420:CDS 50.0%
CCTGTCAAACCAAAAGCTCC+GGG + chr4_1:75353955-75353974 Msa0572420:CDS 50.0%
! GTTCTGTAACCCGGAGCTTT+TGG - chr4_1:75353967-75353986 None:intergenic 50.0%
CTGGGATAGATACTGTGAGC+AGG + chr4_1:75354158-75354177 Msa0572420:CDS 50.0%
! TCGTTTGTTGGAGGAACTGC+AGG + chr4_1:75354306-75354325 Msa0572420:CDS 50.0%
! CGTTTGTTGGAGGAACTGCA+GGG + chr4_1:75354307-75354326 Msa0572420:CDS 50.0%
GGAGGAACTGCAGGGTAAAA+AGG + chr4_1:75354315-75354334 Msa0572420:CDS 50.0%
GGTTGAGAAGCTAGAGGTGA+AGG + chr4_1:75354363-75354382 Msa0572420:CDS 50.0%
GCTAGAGGTGAAGGCAAGAA+AGG + chr4_1:75354372-75354391 Msa0572420:CDS 50.0%
AGAGGTGAAGGCAAGAAAGG+AGG + chr4_1:75354375-75354394 Msa0572420:CDS 50.0%
! AGAGGAAGGCATGTTGGACT+TGG + chr4_1:75354480-75354499 Msa0572420:CDS 50.0%
! GAGGAAGGCATGTTGGACTT+GGG + chr4_1:75354481-75354500 Msa0572420:CDS 50.0%
TGGACTTGGGAGAGGAAAAG+AGG + chr4_1:75354494-75354513 Msa0572420:CDS 50.0%
GGACTTGGGAGAGGAAAAGA+GGG + chr4_1:75354495-75354514 Msa0572420:CDS 50.0%
TCCTGCACAGTTTGGCAGTG+TGG - chr4_1:75349376-75349395 None:intergenic 55.0%
! TTGTGTCTCATCGTGCTGGC+TGG - chr4_1:75349965-75349984 None:intergenic 55.0%
CAGCTCCAGGGAGCTAAAAC+AGG + chr4_1:75350484-75350503 Msa0572420:CDS 55.0%
ACCCTCACTCAGATCCACGA+AGG + chr4_1:75351613-75351632 Msa0572420:CDS 55.0%
CCCTTCGTGGATCTGAGTGA+GGG - chr4_1:75351617-75351636 None:intergenic 55.0%
CCCTCACTCAGATCCACGAA+GGG + chr4_1:75351614-75351633 Msa0572420:CDS 55.0%
GGAGGTTGGCAGAAAATCCC+TGG + chr4_1:75352557-75352576 Msa0572420:CDS 55.0%
AAGAGCCAAAGACCGCGAGT+TGG + chr4_1:75353286-75353305 Msa0572420:CDS 55.0%
AGTGTCCAACTCGCGGTCTT+TGG - chr4_1:75353294-75353313 None:intergenic 55.0%
AAGGCAGAGGAAGAGGCTTC+AGG + chr4_1:75353479-75353498 Msa0572420:CDS 55.0%
!!! CCCGGAGCTTTTGGTTTGAC+AGG - chr4_1:75353958-75353977 None:intergenic 55.0%
AGGCATGTTGGACTTGGGAG+AGG + chr4_1:75354486-75354505 Msa0572420:CDS 55.0%
CTTGGGAGAGGAAAAGAGGG+AGG + chr4_1:75354498-75354517 Msa0572420:CDS 55.0%
AGGAAAAGAGGGAGGCCATC+AGG + chr4_1:75354506-75354525 Msa0572420:CDS 55.0%
CCACAAACAGAGCTGCCTGA+TGG - chr4_1:75354524-75354543 None:intergenic 55.0%
CCATCAGGCAGCTCTGTTTG+TGG + chr4_1:75354521-75354540 Msa0572420:CDS 55.0%
GCCACACTGCCAAACTGTGC+AGG + chr4_1:75349372-75349391 Msa0572420:intron 60.0%
GCCCTTCGTGGATCTGAGTG+AGG - chr4_1:75351618-75351637 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75347206 75354621 75347206 ID=Msa0572420;Name=Msa0572420
chr4_1 mRNA 75347206 75354621 75347206 ID=Msa0572420-mRNA-1;Parent=Msa0572420;Name=Msa0572420-mRNA-1;_AED=0.19;_eAED=0.19;_QI=492|0.75|0.8|1|0.25|0.2|5|0|1340
chr4_1 exon 75347206 75347457 75347206 ID=Msa0572420-mRNA-1:exon:26071;Parent=Msa0572420-mRNA-1
chr4_1 exon 75347552 75347634 75347552 ID=Msa0572420-mRNA-1:exon:26072;Parent=Msa0572420-mRNA-1
chr4_1 exon 75348449 75348524 75348449 ID=Msa0572420-mRNA-1:exon:26073;Parent=Msa0572420-mRNA-1
chr4_1 exon 75350331 75350505 75350331 ID=Msa0572420-mRNA-1:exon:26074;Parent=Msa0572420-mRNA-1
chr4_1 exon 75350693 75354621 75350693 ID=Msa0572420-mRNA-1:exon:26075;Parent=Msa0572420-mRNA-1
chr4_1 five_prime_UTR 75347206 75347457 75347206 ID=Msa0572420-mRNA-1:five_prime_utr;Parent=Msa0572420-mRNA-1
chr4_1 five_prime_UTR 75347552 75347634 75347552 ID=Msa0572420-mRNA-1:five_prime_utr;Parent=Msa0572420-mRNA-1
chr4_1 five_prime_UTR 75348449 75348524 75348449 ID=Msa0572420-mRNA-1:five_prime_utr;Parent=Msa0572420-mRNA-1
chr4_1 five_prime_UTR 75350331 75350411 75350331 ID=Msa0572420-mRNA-1:five_prime_utr;Parent=Msa0572420-mRNA-1
chr4_1 CDS 75350412 75350505 75350412 ID=Msa0572420-mRNA-1:cds;Parent=Msa0572420-mRNA-1
chr4_1 CDS 75350693 75354621 75350693 ID=Msa0572420-mRNA-1:cds;Parent=Msa0572420-mRNA-1
Gene Sequence

>Msa0572420

ATGGTGAAACATCACTTGGGAAAGTCTATAAAATCGCTGTTTGAAAGTCACATTGACCCTGATAAAGAAGAGCAGCTCCAGGGAGCTAAAACAGATGACAACCTTGAAGAGGATGGTACCTCAGCAGAAATTTTGAAGAGGGAACCGCTTGCTGAATTGATTGAGGATATCCACAATCAATACCAATTGATTTACACACAGCATGATCATCTGACAGGTGAGTTAAAGAAAAGGATCAAAGGCAAGCGAGAAAAAGGAAGTTCTTCATCCAGCTCTGATTCAGATTCGGATTCGGATTATTCTTCAAAGGACAGAGGCAGCAAAAATGGTCAACTGCAAAATGAGTTTCAAAAGATAATTGATGGATTAAAGCAAGAACTTGAAGTGGCGCATAAGGAAGTCGCTGACTTAAATCAGAAGTTGACAGTTACACATGAAGAGAAGGAGAACATAAGTTCAAAACACCTTGCAGCATTGACCAAGATACAAGAAGCAGACAAGGTTAGTATGAATTTGAAAACTGATGCTGAGGCATTTGAGATACAAATATCAAAACTTTTGGCTGAGAATACTGAACTAAATAAGCAACTGGACATTGCTGGTAGAGTAGAAGCTGAATTGAGTCAAAAATTGGAGGATATGAAGACAGAAAACAATAGCTTGGCCATGGAGAAAGAGACAGCTCTCCAACAGATTGGTGAGGAAAGGAAGATTACAGATGACCTGAGAAACCTAGTTGATCAATTGAAGGATGATAAGTCAGTGATTGCAAAGGAATTACAAGCAGCAACAGATGAACTTTCTATTCTGAAGCAGCAATTGAAACATGCAGAACAACAAATAACAACAATAAGCCACAATCTGGAGGTTACAGAGGAAGAAAATAAATCATTAAAAGCAGAAATTTCACAAGCTTCAAATGAGATTCAGCTGTCTCAGAACAGAATACAGGAATTTGCATCTGAATTAAGTCAGTTAAAGGAGAAACATGCTGAGAAAGACAGGGAAGTGTCAACCCTCACTCAGATCCACGAAGGGCATAAGAATGAGTCCTCAAATCTTATCAGGGAACTAGAGACACAAATCACAAATCTGGGGATGGAATTAGCATCACTGCAAAACGAGAAAAAAGATATGGAGGATCAACTTAAGAGCAGCACCACTGAAAAAAGAGAACTGGAAGAGCGCAATTTAGGCTTGCTAAATCAAATTTCAGAACTTGAAATGAAGTCCAAAGAAAGAGAAGAGGAACTATCTGCTATCATGAAGAAACTCAAAGATAATGGGGATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGCTCGCTGATTTAAGCTCATTACATGCTCAGAAAACTGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAACTCGAGTTGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATAGAAGACAGAGAACATTTTACAAAAGAAAGAGAAGAGGAACTATCTGATATCATGAAGAAACTCAAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAAATCAAGTCGAAAGCATTACAAGTGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAACTTCAGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGGCAGAAAATCCCTGGATCAAGAGAGACTTATGGAAGACAGAGAAAATTTTACAAAAGAAAGAGAAGCGGAACTATCTGATATCATGAAGAAACTCAAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGAAAATTTGTTGGCTGATATTAGCTCATTACATGCTCGGAAAAATGAACTGGAAGAGCAAATTATTTTTAAAAGTAATGAAGCCTCAACTCGAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACCTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAGAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTAACCAGGCAGATAAAGAATCTGGAACTGGAGATAAGCTCTATCAAGAGCAAAAATAGCAAAGATGAAGAGCAAATAAGGACCAACGTCCAAGTGATCAATCATCTCCAGGATAAAATTCATATGGCAGAGATAGAAGGTTCAACCCAAATAGTTGCCTTTGGTGAGCAAATTAAGAATCTTCAACTTAATTTGGCACAGGAACTAGCGCAGCAGCGCAAAAAAATGGAGTTGGAGCTGGATTCCATACGCAGCCAGAAGAGTGAAGTTGAAGAGCAGTTAAGAGCCAAAGACCGCGAGTTGGACACTTTAGAGCAAAAAGAAAGTGAATACGCAAAGCAAATAAGTGCTAACCGAGATGAGATCAGTAAACTGGCACAGGAAAATTTGGAGCTAGCAGACAAAATAGATCATTCGGAGAGAGGATTAGCAACAAGAGAATTTGAGTTCTCTGCGCTTCAGGATAAACTTTATAAGGCAGAGGAAGAGGCTTCAGGAAAAACAATTGCCTTCACAGCTCAAGTTGACAATCTGAAAAAGGACTTGCTTTCCTTGCAGAAAACAAAAGAAGAATTGGAGCTCTGCTGTGAAAATATCAAAGAAGAACACACAGAAGTCCTCAGAATGGTTGACAATGAAAAGAATGAATTAGCCAACAAAAACATGGATCTTCAGAGAACATTGGAAGAACGAGAAGATGCATATCAGAAGTTGAATGAAGAATATAAACAAATTGATAATTGGTTTAATGAATGCAAGGTCAAACTTGAAGTTGCTGAGAGGAAAATGGAAGAAATGGCAGAAGAGTTTCGTGAAGGCATTGGGTCAAAAGATCAGATGGTAACTGATTTGGAACAGCAAGTTGAAGACCTGAAAAGAGACCTGGAGGAGAAAGGAGATGAAGTCAGCACTTTGTTTGAGAATGTCAGGAATCTTGAGGTAAAGCTTCGCCTGTCAAACCAAAAGCTCCGGGTTACAGAACAATTGCTAAGTGAAAAGGAAGATAGCTTTAGAAAGGCGGAACAAGAGTTTCAGCAAGTTCAGAGAGAACTTGAAGACAGGATTGCTACTCTGGTAGCTACAATCACCGCTAACAATGAAGCTTTTCATGAAACTATCACAAGTGTTAAAGTGTGTGTCAACAGTGTGATATCTGGGATAGATACTGTGAGCAGGAAATTTTCCGACAAAAGCAAAAATCATGAGAACTACATCTCAAACATCTCCCATGAGCTTCAGGTTGCAAAAGAATCTGTCAGTGAGATGAATAGGGTGAAGGGGCAGTTACAGAGAGATAAAGATCGTTTGTTGGAGGAACTGCAGGGTAAAAAGGAAGAGGAATTAACTCTGAGGGAAAAGGTTGAGAAGCTAGAGGTGAAGGCAAGAAAGGAGGAATCAGAGAAGATGAATGTGACATCAACTGTTGTTGAACTTAAGAAGACGGTTGAGGCGCTAGAGAAGTTGATGAAAGAGAAAGAGGAAGGCATGTTGGACTTGGGAGAGGAAAAGAGGGAGGCCATCAGGCAGCTCTGTTTGTGGATTGATTATCACCGCGAGTGTAGTGACTATCTCAAGGAAATCATATCGAAGACACGCAGGGGCCAGAGAGCAGCATAA
Protein sequence

>Msa0572420

MVKHHLGKSIKSLFESHIDPDKEEQLQGAKTDDNLEEDGTSAEILKREPLAELIEDIHNQYQLIYTQHDHLTGELKKRIKGKREKGSSSSSSDSDSDSDYSSKDRGSKNGQLQNEFQKIIDGLKQELEVAHKEVADLNQKLTVTHEEKENISSKHLAALTKIQEADKVSMNLKTDAEAFEIQISKLLAENTELNKQLDIAGRVEAELSQKLEDMKTENNSLAMEKETALQQIGEERKITDDLRNLVDQLKDDKSVIAKELQAATDELSILKQQLKHAEQQITTISHNLEVTEEENKSLKAEISQASNEIQLSQNRIQEFASELSQLKEKHAEKDREVSTLTQIHEGHKNESSNLIRELETQITNLGMELASLQNEKKDMEDQLKSSTTEKRELEERNLGLLNQISELEMKSKEREEELSAIMKKLKDNGDESSSKISDLTSQIDNLLADLSSLHAQKTELEEQIIFKSNEASTRVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLIEDREHFTKEREEELSDIMKKLKDNENESSSKISDLTSQIDNLLADISSLHAQKNELEEQIIFKSNEASNQVESITSELNVLQQEVESLQHQKSDLEVQLVEKSQETSECSIQIQSLKEEVGRKSLDQERLMEDRENFTKEREAELSDIMKKLKDNENESSSKISDLTSQIENLLADISSLHARKNELEEQIIFKSNEASTRVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLMEDRENLTRQIKNLELEISSIKSKNSKDEEQIRTNVQVINHLQDKIHMAEIEGSTQIVAFGEQIKNLQLNLAQELAQQRKKMELELDSIRSQKSEVEEQLRAKDRELDTLEQKESEYAKQISANRDEISKLAQENLELADKIDHSERGLATREFEFSALQDKLYKAEEEASGKTIAFTAQVDNLKKDLLSLQKTKEELELCCENIKEEHTEVLRMVDNEKNELANKNMDLQRTLEEREDAYQKLNEEYKQIDNWFNECKVKLEVAERKMEEMAEEFREGIGSKDQMVTDLEQQVEDLKRDLEEKGDEVSTLFENVRNLEVKLRLSNQKLRVTEQLLSEKEDSFRKAEQEFQQVQRELEDRIATLVATITANNEAFHETITSVKVCVNSVISGIDTVSRKFSDKSKNHENYISNISHELQVAKESVSEMNRVKGQLQRDKDRLLEELQGKKEEELTLREKVEKLEVKARKEESEKMNVTSTVVELKKTVEALEKLMKEKEEGMLDLGEEKREAIRQLCLWIDYHRECSDYLKEIISKTRRGQRAA*