Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090110 | XP_039689920.1 | 97.479 | 357 | 9 | 0 | 1 | 357 | 1 | 357 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090110 | sp|O24305|M3OM1_PEA | 76.519 | 362 | 78 | 2 | 1 | 357 | 1 | 360 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090110 | A0A072UJL0 | 97.199 | 357 | 10 | 0 | 1 | 357 | 1 | 357 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1090110 | 0.814566 | 1.443326e-51 | -8.615850e-47 |
| Msa0045810 | Msa1090110 | 0.810217 | 1.286152e-50 | -8.615850e-47 |
| Msa0062190 | Msa1090110 | 0.807389 | 5.177152e-50 | -8.615850e-47 |
| Msa0092220 | Msa1090110 | 0.819532 | 1.105228e-52 | -8.615850e-47 |
| Msa0618680 | Msa1090110 | 0.809574 | 1.768704e-50 | -8.615850e-47 |
| Msa0618700 | Msa1090110 | 0.805311 | 1.419254e-49 | -8.615850e-47 |
| Msa0698280 | Msa1090110 | 0.808391 | 3.170078e-50 | -8.615850e-47 |
| Msa0177320 | Msa1090110 | 0.811908 | 5.533163e-51 | -8.615850e-47 |
| Msa1041250 | Msa1090110 | 0.808649 | 2.791772e-50 | -8.615850e-47 |
| Msa1090110 | Msa1192180 | 0.801041 | 1.085651e-48 | -8.615850e-47 |
| Msa1090110 | Msa1249600 | 0.802995 | 4.305408e-49 | -8.615850e-47 |
| Msa0256540 | Msa1090110 | 0.820059 | 8.376410e-53 | -8.615850e-47 |
| Msa0334320 | Msa1090110 | 0.815633 | 8.364994e-52 | -8.615850e-47 |
| Msa0933940 | Msa1090110 | 0.816083 | 6.639337e-52 | -8.615850e-47 |
| Msa0967780 | Msa1090110 | 0.802559 | 5.296161e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090110 | MtrunA17_Chr4g0014591 | 97.199 | 357 | 10 | 0 | 1 | 357 | 1 | 357 | 0.0 | 715 |
| Msa1090110 | MtrunA17_Chr4g0014661 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 712 |
| Msa1090110 | MtrunA17_Chr4g0046361 | 76.177 | 361 | 82 | 1 | 1 | 357 | 1 | 361 | 0.0 | 573 |
| Msa1090110 | MtrunA17_Chr4g0014681 | 77.961 | 363 | 74 | 1 | 1 | 357 | 1 | 363 | 0.0 | 570 |
| Msa1090110 | MtrunA17_Chr4g0014561 | 77.686 | 363 | 75 | 1 | 1 | 357 | 1 | 363 | 0.0 | 567 |
| Msa1090110 | MtrunA17_Chr4g0014641 | 76.033 | 363 | 81 | 1 | 1 | 357 | 1 | 363 | 0.0 | 558 |
| Msa1090110 | MtrunA17_Chr4g0046341 | 74.451 | 364 | 86 | 1 | 1 | 357 | 1 | 364 | 0.0 | 543 |
| Msa1090110 | MtrunA17_Chr4g0014601 | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 518 |
| Msa1090110 | MtrunA17_Chr7g0219141 | 48.315 | 356 | 176 | 4 | 6 | 357 | 6 | 357 | 1.93e-120 | 352 |
| Msa1090110 | MtrunA17_Chr1g0188391 | 49.584 | 361 | 170 | 6 | 5 | 357 | 5 | 361 | 3.64e-119 | 348 |
| Msa1090110 | MtrunA17_Chr7g0219161 | 48.837 | 344 | 168 | 4 | 6 | 345 | 6 | 345 | 5.19e-118 | 345 |
| Msa1090110 | MtrunA17_Chr7g0223231 | 47.578 | 351 | 176 | 4 | 6 | 355 | 5 | 348 | 1.24e-116 | 342 |
| Msa1090110 | MtrunA17_Chr5g0432251 | 46.875 | 352 | 179 | 5 | 11 | 357 | 11 | 359 | 1.16e-113 | 334 |
| Msa1090110 | MtrunA17_Chr5g0432301 | 45.856 | 362 | 185 | 6 | 3 | 356 | 1 | 359 | 3.27e-113 | 333 |
| Msa1090110 | MtrunA17_Chr4g0046531 | 49.721 | 358 | 175 | 4 | 1 | 356 | 1 | 355 | 1.22e-110 | 338 |
| Msa1090110 | MtrunA17_Chr4g0046531 | 48.747 | 359 | 179 | 4 | 1 | 357 | 363 | 718 | 2.44e-108 | 332 |
| Msa1090110 | MtrunA17_Chr7g0223241 | 46.724 | 351 | 179 | 4 | 6 | 355 | 5 | 348 | 7.50e-110 | 324 |
| Msa1090110 | MtrunA17_Chr5g0432241 | 45.404 | 359 | 188 | 5 | 4 | 357 | 5 | 360 | 8.01e-110 | 325 |
| Msa1090110 | MtrunA17_Chr5g0432261 | 45.143 | 350 | 160 | 3 | 11 | 357 | 7 | 327 | 3.84e-105 | 311 |
| Msa1090110 | MtrunA17_Chr5g0432211 | 43.840 | 349 | 180 | 6 | 11 | 357 | 11 | 345 | 8.00e-104 | 309 |
| Msa1090110 | MtrunA17_Chr4g0040621 | 44.253 | 348 | 191 | 2 | 11 | 357 | 24 | 369 | 1.31e-102 | 306 |
| Msa1090110 | MtrunA17_Chr1g0188371 | 47.164 | 335 | 168 | 5 | 9 | 337 | 9 | 340 | 3.64e-97 | 293 |
| Msa1090110 | MtrunA17_Chr3g0121301 | 36.765 | 340 | 200 | 10 | 20 | 353 | 27 | 357 | 4.82e-58 | 192 |
| Msa1090110 | MtrunA17_Chr4g0022021 | 33.889 | 360 | 228 | 8 | 3 | 357 | 14 | 368 | 3.99e-57 | 190 |
| Msa1090110 | MtrunA17_Chr4g0021981 | 33.611 | 360 | 229 | 8 | 3 | 357 | 14 | 368 | 4.97e-56 | 187 |
| Msa1090110 | MtrunA17_Chr7g0219171 | 57.463 | 134 | 56 | 1 | 224 | 357 | 116 | 248 | 3.42e-50 | 168 |
| Msa1090110 | MtrunA17_Chr7g0219171 | 46.847 | 111 | 58 | 1 | 6 | 116 | 6 | 115 | 3.76e-28 | 110 |
| Msa1090110 | MtrunA17_Chr4g0014611 | 94.000 | 100 | 6 | 0 | 258 | 357 | 8 | 107 | 2.50e-44 | 148 |
| Msa1090110 | MtrunA17_Chr5g0448091 | 32.537 | 335 | 203 | 12 | 29 | 350 | 31 | 355 | 1.21e-41 | 149 |
| Msa1090110 | MtrunA17_Chr4g0014671 | 94.286 | 105 | 6 | 0 | 253 | 357 | 30 | 134 | 9.68e-41 | 140 |
| Msa1090110 | MtrunA17_Chr1g0200491 | 30.199 | 351 | 223 | 8 | 5 | 343 | 17 | 357 | 1.08e-39 | 144 |
| Msa1090110 | MtrunA17_Chr3g0128011 | 32.203 | 354 | 200 | 12 | 9 | 343 | 71 | 403 | 1.26e-39 | 145 |
| Msa1090110 | MtrunA17_Chr7g0276401 | 30.655 | 336 | 215 | 9 | 26 | 352 | 42 | 368 | 2.10e-39 | 143 |
| Msa1090110 | MtrunA17_Chr8g0367501 | 29.477 | 363 | 236 | 9 | 5 | 355 | 6 | 360 | 2.29e-39 | 144 |
| Msa1090110 | MtrunA17_Chr8g0367441 | 30.154 | 325 | 208 | 8 | 26 | 338 | 41 | 358 | 7.65e-39 | 142 |
| Msa1090110 | MtrunA17_Chr7g0276411 | 30.395 | 329 | 210 | 8 | 26 | 342 | 26 | 347 | 1.74e-38 | 140 |
| Msa1090110 | MtrunA17_Chr7g0218131 | 29.674 | 337 | 218 | 9 | 32 | 356 | 40 | 369 | 3.12e-38 | 140 |
| Msa1090110 | MtrunA17_Chr8g0367491 | 28.783 | 337 | 220 | 9 | 26 | 349 | 40 | 369 | 1.27e-37 | 139 |
| Msa1090110 | MtrunA17_Chr1g0163601 | 29.730 | 333 | 216 | 7 | 24 | 344 | 29 | 355 | 5.90e-37 | 137 |
| Msa1090110 | MtrunA17_Chr1g0163611 | 28.818 | 347 | 227 | 8 | 24 | 356 | 29 | 369 | 5.96e-37 | 137 |
| Msa1090110 | MtrunA17_Chr7g0218301 | 28.824 | 340 | 217 | 8 | 32 | 355 | 40 | 370 | 1.08e-36 | 136 |
| Msa1090110 | MtrunA17_Chr8g0367451 | 29.846 | 325 | 209 | 8 | 26 | 338 | 40 | 357 | 1.43e-36 | 135 |
| Msa1090110 | MtrunA17_Chr7g0218261 | 28.529 | 333 | 221 | 8 | 32 | 355 | 39 | 363 | 1.66e-36 | 135 |
| Msa1090110 | MtrunA17_Chr7g0218271 | 28.614 | 339 | 219 | 8 | 32 | 355 | 40 | 370 | 5.15e-36 | 134 |
| Msa1090110 | MtrunA17_Chr2g0314271 | 32.609 | 322 | 198 | 9 | 31 | 342 | 27 | 339 | 7.56e-36 | 133 |
| Msa1090110 | MtrunA17_Chr7g0218181 | 26.786 | 336 | 226 | 9 | 32 | 356 | 40 | 366 | 2.08e-35 | 132 |
| Msa1090110 | MtrunA17_Chr3g0085211 | 30.982 | 326 | 209 | 9 | 28 | 344 | 38 | 356 | 2.34e-34 | 130 |
| Msa1090110 | MtrunA17_Chr2g0307521 | 29.204 | 339 | 211 | 10 | 32 | 355 | 34 | 358 | 5.34e-34 | 129 |
| Msa1090110 | MtrunA17_Chr8g0345851 | 31.395 | 258 | 168 | 5 | 89 | 344 | 27 | 277 | 2.06e-33 | 125 |
| Msa1090110 | MtrunA17_Chr7g0218211 | 29.552 | 335 | 216 | 9 | 32 | 355 | 39 | 364 | 2.63e-33 | 127 |
| Msa1090110 | MtrunA17_Chr1g0163621 | 28.955 | 335 | 214 | 9 | 25 | 344 | 44 | 369 | 3.37e-33 | 127 |
| Msa1090110 | MtrunA17_Chr8g0367381 | 29.355 | 310 | 183 | 8 | 26 | 324 | 41 | 325 | 8.60e-32 | 122 |
| Msa1090110 | MtrunA17_Chr3g0085201 | 30.539 | 334 | 207 | 13 | 32 | 352 | 29 | 350 | 1.82e-30 | 119 |
| Msa1090110 | MtrunA17_Chr3g0130011 | 27.964 | 329 | 219 | 11 | 23 | 342 | 24 | 343 | 4.37e-28 | 112 |
| Msa1090110 | MtrunA17_Chr4g0014621 | 95.455 | 66 | 3 | 0 | 292 | 357 | 197 | 262 | 1.02e-27 | 109 |
| Msa1090110 | MtrunA17_Chr3g0130061 | 26.524 | 328 | 225 | 10 | 23 | 342 | 24 | 343 | 2.18e-26 | 107 |
| Msa1090110 | MtrunA17_Chr8g0367461 | 37.963 | 108 | 62 | 3 | 244 | 349 | 1 | 105 | 4.51e-18 | 79.0 |
| Msa1090110 | MtrunA17_Chr6g0482291 | 29.560 | 159 | 100 | 3 | 185 | 342 | 14 | 161 | 2.42e-17 | 79.0 |
| Msa1090110 | MtrunA17_Chr8g0367401 | 33.945 | 109 | 70 | 1 | 149 | 257 | 4 | 110 | 3.17e-14 | 69.3 |
| Msa1090110 | MtrunA17_Chr4g0011691 | 38.776 | 98 | 52 | 3 | 6 | 101 | 16 | 107 | 1.09e-13 | 70.1 |
| Msa1090110 | MtrunA17_Chr4g0011691 | 40.625 | 96 | 53 | 3 | 259 | 353 | 140 | 232 | 1.08e-12 | 67.0 |
| Msa1090110 | MtrunA17_Chr4g0014551 | 88.636 | 44 | 5 | 0 | 314 | 357 | 1 | 44 | 3.84e-13 | 63.2 |
| Msa1090110 | MtrunA17_Chr1g0170941 | 43.939 | 66 | 37 | 0 | 190 | 255 | 11 | 76 | 4.39e-11 | 58.5 |
| Msa1090110 | MtrunA17_Chr8g0367391 | 32.203 | 118 | 73 | 4 | 228 | 342 | 6 | 119 | 6.90e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090110 | AT4G35150.1 | 31.638 | 354 | 184 | 10 | 16 | 356 | 15 | 323 | 2.49e-46 | 160 |
| Msa1090110 | AT4G35160.1 | 33.889 | 360 | 211 | 12 | 16 | 356 | 29 | 380 | 2.83e-45 | 159 |
| Msa1090110 | AT5G54160.1 | 33.127 | 323 | 199 | 8 | 31 | 344 | 34 | 348 | 4.49e-43 | 153 |
| Msa1090110 | AT3G53140.1 | 31.594 | 345 | 200 | 10 | 31 | 354 | 27 | 356 | 1.28e-37 | 139 |
| Msa1090110 | AT1G77520.1 | 31.395 | 344 | 211 | 9 | 31 | 356 | 44 | 380 | 3.29e-37 | 138 |
| Msa1090110 | AT1G33030.1 | 29.091 | 330 | 213 | 10 | 31 | 347 | 21 | 342 | 3.48e-34 | 129 |
| Msa1090110 | AT1G51990.2 | 31.563 | 339 | 210 | 11 | 33 | 357 | 32 | 362 | 4.89e-34 | 129 |
| Msa1090110 | AT5G53810.1 | 31.412 | 347 | 212 | 10 | 29 | 356 | 38 | 377 | 1.76e-33 | 128 |
| Msa1090110 | AT1G51990.1 | 31.563 | 339 | 210 | 11 | 33 | 357 | 32 | 362 | 4.21e-33 | 126 |
| Msa1090110 | AT1G63140.2 | 29.167 | 360 | 225 | 12 | 9 | 347 | 19 | 369 | 7.89e-31 | 120 |
| Msa1090110 | AT1G63140.4 | 29.167 | 360 | 225 | 12 | 9 | 347 | 39 | 389 | 9.26e-31 | 121 |
| Msa1090110 | AT1G77530.1 | 31.105 | 344 | 212 | 9 | 31 | 356 | 44 | 380 | 1.42e-28 | 114 |
| Msa1090110 | AT1G76790.1 | 27.273 | 363 | 224 | 12 | 7 | 349 | 9 | 351 | 2.93e-27 | 110 |
| Msa1090110 | AT1G62900.1 | 33.333 | 183 | 115 | 4 | 167 | 347 | 16 | 193 | 2.73e-23 | 96.3 |
| Msa1090110 | AT1G21130.1 | 26.970 | 330 | 212 | 10 | 31 | 342 | 40 | 358 | 2.95e-21 | 94.0 |
| Msa1090110 | AT1G21110.1 | 26.606 | 327 | 211 | 10 | 31 | 339 | 40 | 355 | 3.73e-21 | 94.0 |
| Msa1090110 | AT1G21100.1 | 26.970 | 330 | 212 | 10 | 31 | 342 | 40 | 358 | 9.35e-21 | 92.8 |
| Msa1090110 | AT1G21120.1 | 26.364 | 330 | 214 | 10 | 31 | 342 | 40 | 358 | 5.89e-20 | 90.5 |
| Msa1090110 | AT1G21120.2 | 26.364 | 330 | 214 | 10 | 31 | 342 | 88 | 406 | 9.40e-20 | 90.1 |
| Msa1090110 | AT5G37170.2 | 28.351 | 194 | 133 | 4 | 166 | 356 | 43 | 233 | 9.63e-19 | 84.7 |
| Msa1090110 | AT5G37170.1 | 28.351 | 194 | 133 | 4 | 166 | 356 | 143 | 333 | 2.55e-18 | 85.1 |
| Msa1090110 | AT5G37170.3 | 30.636 | 173 | 111 | 5 | 188 | 354 | 14 | 183 | 6.07e-18 | 81.3 |
| Msa1090110 | AT1G63140.1 | 27.239 | 268 | 172 | 8 | 9 | 257 | 39 | 302 | 8.98e-14 | 71.6 |
| Msa1090110 | AT1G33030.2 | 26.160 | 237 | 160 | 7 | 31 | 257 | 21 | 252 | 9.53e-14 | 70.9 |
| Msa1090110 | AT1G33030.3 | 26.160 | 237 | 160 | 7 | 31 | 257 | 21 | 252 | 1.67e-13 | 70.5 |
Find 75 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGTAAATAACTTATT+TGG | 0.146479 | 7_3:-3793731 | None:intergenic |
| TGTATACATGTTTGTATAAA+TGG | 0.173388 | 7_3:-3792204 | None:intergenic |
| TGCTGTTCTTCAATATCTTT+AGG | 0.219406 | 7_3:-3793442 | None:intergenic |
| TTCAAAGATGACGCTAATTC+AGG | 0.251261 | 7_3:-3792313 | None:intergenic |
| TATAGGACACTAACTTTAGA+AGG | 0.276793 | 7_3:-3792343 | None:intergenic |
| CAGCCATGTGTTTGAGGGTT+TGG | 0.297695 | 7_3:+3792708 | Msa1090110:CDS |
| GTTTGAGGGTTTGGAATCTT+TGG | 0.299287 | 7_3:+3792717 | Msa1090110:CDS |
| GCAACTACTAATTAAAATTA+AGG | 0.301025 | 7_3:-3793707 | None:intergenic |
| CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 7_3:-3792539 | None:intergenic |
| GCTGTTCTTCAATATCTTTA+GGG | 0.307030 | 7_3:-3793441 | None:intergenic |
| CAAAGTGGGTTCTACATGAT+TGG | 0.313363 | 7_3:+3793405 | Msa1090110:intron |
| AACAGCAAAGAAGCTATTTC+AGG | 0.318216 | 7_3:+3793458 | Msa1090110:CDS |
| CTAAAGTTAGTGTCCTATAT+AGG | 0.347448 | 7_3:+3792347 | Msa1090110:CDS |
| AACAAATGATTTCGGAGTCT+TGG | 0.350125 | 7_3:+3792009 | Msa1090110:five_prime_UTR |
| TCATTGGCTTTCCATGTTTG+TGG | 0.380132 | 7_3:-3792285 | None:intergenic |
| AAAGAAGCTATTTCAGGAAA+AGG | 0.384493 | 7_3:+3793464 | Msa1090110:CDS |
| CTTGTTATAAATTAAAACTT+TGG | 0.386705 | 7_3:-3792126 | None:intergenic |
| ACTAACAAGTGGTGCAAAAC+AGG | 0.393012 | 7_3:-3792479 | None:intergenic |
| CCACTGATGAGAAGCTTTGA+AGG | 0.393766 | 7_3:-3792448 | None:intergenic |
| CAGGTTGTGGCTAACTTATC+TGG | 0.396383 | 7_3:+3792826 | Msa1090110:CDS |
| GATAAACTTAGTTTGTTTCA+AGG | 0.401061 | 7_3:+3792637 | Msa1090110:CDS |
| ACTCAAAATTTGAGCTTTGT+TGG | 0.424327 | 7_3:+3792850 | Msa1090110:CDS |
| GCACTCTATGAAAGTGCAAT+GGG | 0.425564 | 7_3:+3792574 | Msa1090110:CDS |
| AGAGACTTGAAGCCGCATAT+TGG | 0.434193 | 7_3:-3793671 | None:intergenic |
| GCTAATTCAGGAACAGTCAT+TGG | 0.435544 | 7_3:-3792301 | None:intergenic |
| GTAATGATGACTCTACATAA+TGG | 0.437661 | 7_3:+3793578 | Msa1090110:CDS |
| AAAGTGGGTTCTACATGATT+GGG | 0.446934 | 7_3:+3793406 | Msa1090110:intron |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 7_3:+3792530 | Msa1090110:CDS |
| CAAAATTTGAGCTTTGTTGG+TGG | 0.456307 | 7_3:+3792853 | Msa1090110:CDS |
| ATAAACTTAGTTTGTTTCAA+GGG | 0.456335 | 7_3:+3792638 | Msa1090110:CDS |
| AGTGCTTCATCCATGTTCTC+TGG | 0.459421 | 7_3:+3792504 | Msa1090110:CDS |
| GACTGCAGCCATGTGTTTGA+GGG | 0.460568 | 7_3:+3792703 | Msa1090110:CDS |
| GTTGATGTAGCAGGTGGGAC+TGG | 0.460670 | 7_3:+3792739 | Msa1090110:CDS |
| GCAAGCGCAAGAACCTATAT+AGG | 0.464145 | 7_3:-3792360 | None:intergenic |
| CATCTGCAGGAGGGATAGAC+TGG | 0.469129 | 7_3:-3792885 | None:intergenic |
| ATTTCAGGAAAAGGGAGAAA+AGG | 0.472680 | 7_3:+3793473 | Msa1090110:CDS |
| AATGTTTAAGCTTGCTCTCA+AGG | 0.478021 | 7_3:+3792681 | Msa1090110:CDS |
| GGACTGCAGCCATGTGTTTG+AGG | 0.478258 | 7_3:+3792702 | Msa1090110:CDS |
| AAGAAGCTATTTCAGGAAAA+GGG | 0.480367 | 7_3:+3793465 | Msa1090110:CDS |
| ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 7_3:+3792512 | Msa1090110:CDS |
| CTCAAATCAGCTGTGGAACT+AGG | 0.506689 | 7_3:+3792247 | Msa1090110:CDS |
| GAATCTTTGGTTGATGTAGC+AGG | 0.509095 | 7_3:+3792730 | Msa1090110:CDS |
| TTTAGATCAACCACAGGTTG+TGG | 0.518679 | 7_3:+3792813 | Msa1090110:CDS |
| CACAGCTGATTTGAGTGCCA+TGG | 0.520024 | 7_3:-3792239 | None:intergenic |
| TGCACTCTATGAAAGTGCAA+TGG | 0.533425 | 7_3:+3792573 | Msa1090110:CDS |
| AAGAAACTCATATATGATGC+AGG | 0.545378 | 7_3:+3793626 | Msa1090110:CDS |
| GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 7_3:+3792546 | Msa1090110:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 7_3:-3792898 | None:intergenic |
| CATTTGTGAATCAGCTGCCA+TGG | 0.558343 | 7_3:-3792662 | None:intergenic |
| TAAACTTAGTTTGTTTCAAG+GGG | 0.566712 | 7_3:+3792639 | Msa1090110:CDS |
| GAAATGGATTTCAAGAGCAA+TGG | 0.573206 | 7_3:+3792148 | Msa1090110:exon |
| ATACAGCTTTATAAGTTCCA+TGG | 0.573273 | 7_3:+3792222 | Msa1090110:CDS |
| GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 7_3:+3793556 | Msa1090110:CDS |
| CCTTCAAAGCTTCTCATCAG+TGG | 0.586184 | 7_3:+3792448 | Msa1090110:CDS |
| TGCCACATATCCAGAGAACA+TGG | 0.593078 | 7_3:-3792514 | None:intergenic |
| GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 7_3:-3793552 | None:intergenic |
| TAGTTTGTTTCAAGGGGCCA+TGG | 0.599443 | 7_3:+3792645 | Msa1090110:CDS |
| AAAACTGTGCATTTAATGTG+AGG | 0.602789 | 7_3:-3792793 | None:intergenic |
| TCTTTGGTTGATGTAGCAGG+TGG | 0.609398 | 7_3:+3792733 | Msa1090110:CDS |
| GATAAGTTAGCCACAACCTG+TGG | 0.609880 | 7_3:-3792823 | None:intergenic |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 7_3:-3792895 | None:intergenic |
| TACAAGATTACTCCAATATG+CGG | 0.624719 | 7_3:+3793659 | Msa1090110:CDS |
| GTAGATGCAATCCACAAACA+TGG | 0.627357 | 7_3:+3792274 | Msa1090110:CDS |
| ATAGGACACTAACTTTAGAA+GGG | 0.629455 | 7_3:-3792342 | None:intergenic |
| CATGGCACTCAAATCAGCTG+TGG | 0.632130 | 7_3:+3792240 | Msa1090110:CDS |
| CACTCTATGAAAGTGCAATG+GGG | 0.635539 | 7_3:+3792575 | Msa1090110:CDS |
| GTATATGAATTATACAAACA+AGG | 0.638663 | 7_3:-3792059 | None:intergenic |
| ATTCCAAACCCTCAAACACA+TGG | 0.643702 | 7_3:-3792711 | None:intergenic |
| ACTCTATGAAAGTGCAATGG+GGG | 0.643797 | 7_3:+3792576 | Msa1090110:CDS |
| CTTTGGTTGATGTAGCAGGT+GGG | 0.651080 | 7_3:+3792734 | Msa1090110:CDS |
| TTGCGCTTGCTAACACACGA+TGG | 0.651331 | 7_3:+3792373 | Msa1090110:CDS |
| TGAAGCACTCCACTAACAAG+TGG | 0.666600 | 7_3:-3792490 | None:intergenic |
| CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 7_3:+3792540 | Msa1090110:CDS |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 7_3:-3792894 | None:intergenic |
| CTGATGAGAAGCTTTGAAGG+AGG | 0.702373 | 7_3:-3792445 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTATAACAAGAAA+TGG | + | chr7_3:3792132-3792151 | Msa1090110:exon | 10.0% |
| !!! | TTATTTTTAAAATAGAATCT+TGG | - | chr7_3:3793831-3793850 | None:intergenic | 10.0% |
| !!! | TTTTAATTTATAACAAGAAA+TGG | + | chr7_3:3792132-3792151 | Msa1090110:exon | 10.0% |
| !!! | TTATTTTTAAAATAGAATCT+TGG | - | chr7_3:3793831-3793850 | None:intergenic | 10.0% |
| !!! | CTTGTTATAAATTAAAACTT+TGG | - | chr7_3:3792129-3792148 | None:intergenic | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | - | chr7_3:3792605-3792624 | None:intergenic | 15.0% |
| !! | GAATTTGTAAATAACTTATT+TGG | - | chr7_3:3793734-3793753 | None:intergenic | 15.0% |
| !!! | CTTGTTATAAATTAAAACTT+TGG | - | chr7_3:3792129-3792148 | None:intergenic | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | - | chr7_3:3792605-3792624 | None:intergenic | 15.0% |
| !! | GAATTTGTAAATAACTTATT+TGG | - | chr7_3:3793734-3793753 | None:intergenic | 15.0% |
| !! | TGTCTAAAAACAAATGATTT+CGG | + | chr7_3:3792001-3792020 | Msa1090110:five_prime_UTR | 20.0% |
| !! | GTATATGAATTATACAAACA+AGG | - | chr7_3:3792062-3792081 | None:intergenic | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr7_3:3792207-3792226 | None:intergenic | 20.0% |
| !!! | ATAAACTTAGTTTGTTTCAA+GGG | + | chr7_3:3792638-3792657 | Msa1090110:CDS | 20.0% |
| !! | ATTTATATCTTAATCAGACA+CGG | - | chr7_3:3793034-3793053 | None:intergenic | 20.0% |
| !! | CTGATTAAGATATAAATTTG+TGG | + | chr7_3:3793037-3793056 | Msa1090110:intron | 20.0% |
| !!! | CAAATATAACTTTTCATAGA+AGG | - | chr7_3:3793175-3793194 | None:intergenic | 20.0% |
| !! | ATGAAAAGTTATATTTGCAA+TGG | + | chr7_3:3793178-3793197 | Msa1090110:intron | 20.0% |
| !! | AAGAAAGAGAAAAAAAAGAA+TGG | + | chr7_3:3793603-3793622 | Msa1090110:CDS | 20.0% |
| !! | GCAACTACTAATTAAAATTA+AGG | - | chr7_3:3793710-3793729 | None:intergenic | 20.0% |
| !! | TGTCTAAAAACAAATGATTT+CGG | + | chr7_3:3792001-3792020 | Msa1090110:five_prime_UTR | 20.0% |
| !! | GTATATGAATTATACAAACA+AGG | - | chr7_3:3792062-3792081 | None:intergenic | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr7_3:3792207-3792226 | None:intergenic | 20.0% |
| !!! | ATAAACTTAGTTTGTTTCAA+GGG | + | chr7_3:3792638-3792657 | Msa1090110:CDS | 20.0% |
| !! | ATTTATATCTTAATCAGACA+CGG | - | chr7_3:3793034-3793053 | None:intergenic | 20.0% |
| !! | CTGATTAAGATATAAATTTG+TGG | + | chr7_3:3793037-3793056 | Msa1090110:intron | 20.0% |
| !!! | CAAATATAACTTTTCATAGA+AGG | - | chr7_3:3793175-3793194 | None:intergenic | 20.0% |
| !! | ATGAAAAGTTATATTTGCAA+TGG | + | chr7_3:3793178-3793197 | Msa1090110:intron | 20.0% |
| !! | AAGAAAGAGAAAAAAAAGAA+TGG | + | chr7_3:3793603-3793622 | Msa1090110:CDS | 20.0% |
| !! | GCAACTACTAATTAAAATTA+AGG | - | chr7_3:3793710-3793729 | None:intergenic | 20.0% |
| !! | TTTTAGACATTATTAACACG+AGG | - | chr7_3:3791990-3792009 | None:intergenic | 25.0% |
| !!! | GTGTGTTGTATTTTTTTTAG+AGG | - | chr7_3:3792093-3792112 | None:intergenic | 25.0% |
| !!! | GATAAACTTAGTTTGTTTCA+AGG | + | chr7_3:3792637-3792656 | Msa1090110:CDS | 25.0% |
| !!! | TAAACTTAGTTTGTTTCAAG+GGG | + | chr7_3:3792639-3792658 | Msa1090110:CDS | 25.0% |
| !! | TAAGCATTTTTCTTATAGAG+AGG | - | chr7_3:3793082-3793101 | None:intergenic | 25.0% |
| !!! | AGCTTTATACGATTTTGATA+GGG | + | chr7_3:3793226-3793245 | Msa1090110:intron | 25.0% |
| !! | TTTTAGACATTATTAACACG+AGG | - | chr7_3:3791990-3792009 | None:intergenic | 25.0% |
| !!! | GTGTGTTGTATTTTTTTTAG+AGG | - | chr7_3:3792093-3792112 | None:intergenic | 25.0% |
| !!! | GATAAACTTAGTTTGTTTCA+AGG | + | chr7_3:3792637-3792656 | Msa1090110:CDS | 25.0% |
| !!! | TAAACTTAGTTTGTTTCAAG+GGG | + | chr7_3:3792639-3792658 | Msa1090110:CDS | 25.0% |
| !! | TAAGCATTTTTCTTATAGAG+AGG | - | chr7_3:3793082-3793101 | None:intergenic | 25.0% |
| !!! | AGCTTTATACGATTTTGATA+GGG | + | chr7_3:3793226-3793245 | Msa1090110:intron | 25.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | + | chr7_3:3792222-3792241 | Msa1090110:CDS | 30.0% |
| ! | ATAGGACACTAACTTTAGAA+GGG | - | chr7_3:3792345-3792364 | None:intergenic | 30.0% |
| TATAGGACACTAACTTTAGA+AGG | - | chr7_3:3792346-3792365 | None:intergenic | 30.0% | |
| CTAAAGTTAGTGTCCTATAT+AGG | + | chr7_3:3792347-3792366 | Msa1090110:CDS | 30.0% | |
| AAAACTGTGCATTTAATGTG+AGG | - | chr7_3:3792796-3792815 | None:intergenic | 30.0% | |
| ! | ACTCAAAATTTGAGCTTTGT+TGG | + | chr7_3:3792850-3792869 | Msa1090110:CDS | 30.0% |
| AGAAAAATGCTTACTTCACA+TGG | + | chr7_3:3793089-3793108 | Msa1090110:intron | 30.0% | |
| TCAAAATCGTATAAAGCTCT+GGG | - | chr7_3:3793224-3793243 | None:intergenic | 30.0% | |
| ATCAAAATCGTATAAAGCTC+TGG | - | chr7_3:3793225-3793244 | None:intergenic | 30.0% | |
| !! | GAGCTTTATACGATTTTGAT+AGG | + | chr7_3:3793225-3793244 | Msa1090110:intron | 30.0% |
| ATAAAAATTTGCCTTTGCCA+AGG | - | chr7_3:3793259-3793278 | None:intergenic | 30.0% | |
| ! | TTGGCAAAGGCAAATTTTTA+TGG | + | chr7_3:3793258-3793277 | Msa1090110:intron | 30.0% |
| !! | ATCTGAAATGTTTTCCAAAG+TGG | + | chr7_3:3793390-3793409 | Msa1090110:intron | 30.0% |
| !! | TCTGAAATGTTTTCCAAAGT+GGG | + | chr7_3:3793391-3793410 | Msa1090110:intron | 30.0% |
| GCTGTTCTTCAATATCTTTA+GGG | - | chr7_3:3793444-3793463 | None:intergenic | 30.0% | |
| TGCTGTTCTTCAATATCTTT+AGG | - | chr7_3:3793445-3793464 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr7_3:3793464-3793483 | Msa1090110:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr7_3:3793465-3793484 | Msa1090110:CDS | 30.0% |
| GTAATGATGACTCTACATAA+TGG | + | chr7_3:3793578-3793597 | Msa1090110:CDS | 30.0% | |
| AAGAAACTCATATATGATGC+AGG | + | chr7_3:3793626-3793645 | Msa1090110:CDS | 30.0% | |
| TACAAGATTACTCCAATATG+CGG | + | chr7_3:3793659-3793678 | Msa1090110:CDS | 30.0% | |
| ! | ATACAGCTTTATAAGTTCCA+TGG | + | chr7_3:3792222-3792241 | Msa1090110:CDS | 30.0% |
| ! | ATAGGACACTAACTTTAGAA+GGG | - | chr7_3:3792345-3792364 | None:intergenic | 30.0% |
| TATAGGACACTAACTTTAGA+AGG | - | chr7_3:3792346-3792365 | None:intergenic | 30.0% | |
| CTAAAGTTAGTGTCCTATAT+AGG | + | chr7_3:3792347-3792366 | Msa1090110:CDS | 30.0% | |
| AAAACTGTGCATTTAATGTG+AGG | - | chr7_3:3792796-3792815 | None:intergenic | 30.0% | |
| ! | ACTCAAAATTTGAGCTTTGT+TGG | + | chr7_3:3792850-3792869 | Msa1090110:CDS | 30.0% |
| AGAAAAATGCTTACTTCACA+TGG | + | chr7_3:3793089-3793108 | Msa1090110:intron | 30.0% | |
| TCAAAATCGTATAAAGCTCT+GGG | - | chr7_3:3793224-3793243 | None:intergenic | 30.0% | |
| ATCAAAATCGTATAAAGCTC+TGG | - | chr7_3:3793225-3793244 | None:intergenic | 30.0% | |
| !! | GAGCTTTATACGATTTTGAT+AGG | + | chr7_3:3793225-3793244 | Msa1090110:intron | 30.0% |
| ATAAAAATTTGCCTTTGCCA+AGG | - | chr7_3:3793259-3793278 | None:intergenic | 30.0% | |
| ! | TTGGCAAAGGCAAATTTTTA+TGG | + | chr7_3:3793258-3793277 | Msa1090110:intron | 30.0% |
| !! | ATCTGAAATGTTTTCCAAAG+TGG | + | chr7_3:3793390-3793409 | Msa1090110:intron | 30.0% |
| !! | TCTGAAATGTTTTCCAAAGT+GGG | + | chr7_3:3793391-3793410 | Msa1090110:intron | 30.0% |
| GCTGTTCTTCAATATCTTTA+GGG | - | chr7_3:3793444-3793463 | None:intergenic | 30.0% | |
| TGCTGTTCTTCAATATCTTT+AGG | - | chr7_3:3793445-3793464 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr7_3:3793464-3793483 | Msa1090110:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr7_3:3793465-3793484 | Msa1090110:CDS | 30.0% |
| GTAATGATGACTCTACATAA+TGG | + | chr7_3:3793578-3793597 | Msa1090110:CDS | 30.0% | |
| AAGAAACTCATATATGATGC+AGG | + | chr7_3:3793626-3793645 | Msa1090110:CDS | 30.0% | |
| TACAAGATTACTCCAATATG+CGG | + | chr7_3:3793659-3793678 | Msa1090110:CDS | 30.0% | |
| AACAAATGATTTCGGAGTCT+TGG | + | chr7_3:3792009-3792028 | Msa1090110:five_prime_UTR | 35.0% | |
| ! | GAAATGGATTTCAAGAGCAA+TGG | + | chr7_3:3792148-3792167 | Msa1090110:exon | 35.0% |
| TTCAAAGATGACGCTAATTC+AGG | - | chr7_3:3792316-3792335 | None:intergenic | 35.0% | |
| ! | AATGTTTAAGCTTGCTCTCA+AGG | + | chr7_3:3792681-3792700 | Msa1090110:CDS | 35.0% |
| !! | CAAAATTTGAGCTTTGTTGG+TGG | + | chr7_3:3792853-3792872 | Msa1090110:CDS | 35.0% |
| ! | AAAGTGGGTTCTACATGATT+GGG | + | chr7_3:3793406-3793425 | Msa1090110:intron | 35.0% |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr7_3:3793458-3793477 | Msa1090110:CDS | 35.0% |
| ATTTCAGGAAAAGGGAGAAA+AGG | + | chr7_3:3793473-3793492 | Msa1090110:CDS | 35.0% | |
| AACAAATGATTTCGGAGTCT+TGG | + | chr7_3:3792009-3792028 | Msa1090110:five_prime_UTR | 35.0% | |
| ! | GAAATGGATTTCAAGAGCAA+TGG | + | chr7_3:3792148-3792167 | Msa1090110:exon | 35.0% |
| TTCAAAGATGACGCTAATTC+AGG | - | chr7_3:3792316-3792335 | None:intergenic | 35.0% | |
| ! | AATGTTTAAGCTTGCTCTCA+AGG | + | chr7_3:3792681-3792700 | Msa1090110:CDS | 35.0% |
| !! | CAAAATTTGAGCTTTGTTGG+TGG | + | chr7_3:3792853-3792872 | Msa1090110:CDS | 35.0% |
| ! | AAAGTGGGTTCTACATGATT+GGG | + | chr7_3:3793406-3793425 | Msa1090110:intron | 35.0% |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr7_3:3793458-3793477 | Msa1090110:CDS | 35.0% |
| ATTTCAGGAAAAGGGAGAAA+AGG | + | chr7_3:3793473-3793492 | Msa1090110:CDS | 35.0% | |
| GTAGATGCAATCCACAAACA+TGG | + | chr7_3:3792274-3792293 | Msa1090110:CDS | 40.0% | |
| !! | TCATTGGCTTTCCATGTTTG+TGG | - | chr7_3:3792288-3792307 | None:intergenic | 40.0% |
| GCTAATTCAGGAACAGTCAT+TGG | - | chr7_3:3792304-3792323 | None:intergenic | 40.0% | |
| ACTAACAAGTGGTGCAAAAC+AGG | - | chr7_3:3792482-3792501 | None:intergenic | 40.0% | |
| !! | TGTTTTGCACCACTTGTTAG+TGG | + | chr7_3:3792481-3792500 | Msa1090110:CDS | 40.0% |
| ATCCATGTTCTCTGGATATG+TGG | + | chr7_3:3792512-3792531 | Msa1090110:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr7_3:3792542-3792561 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr7_3:3792540-3792559 | Msa1090110:CDS | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | + | chr7_3:3792573-3792592 | Msa1090110:CDS | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | + | chr7_3:3792574-3792593 | Msa1090110:CDS | 40.0% |
| ! | CACTCTATGAAAGTGCAATG+GGG | + | chr7_3:3792575-3792594 | Msa1090110:CDS | 40.0% |
| ! | ACTCTATGAAAGTGCAATGG+GGG | + | chr7_3:3792576-3792595 | Msa1090110:CDS | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | - | chr7_3:3792714-3792733 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | + | chr7_3:3792717-3792736 | Msa1090110:CDS | 40.0% |
| ! | GAATCTTTGGTTGATGTAGC+AGG | + | chr7_3:3792730-3792749 | Msa1090110:CDS | 40.0% |
| !!! | CACAGTTTTAGATCAACCAC+AGG | + | chr7_3:3792807-3792826 | Msa1090110:CDS | 40.0% |
| TTTAGATCAACCACAGGTTG+TGG | + | chr7_3:3792813-3792832 | Msa1090110:CDS | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr7_3:3792901-3792920 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr7_3:3792900-3792919 | Msa1090110:CDS | 40.0% |
| ATCCACTCACATGTGATTGA+GGG | - | chr7_3:3793011-3793030 | None:intergenic | 40.0% | |
| TGGGAAACCAACAATTGACA+GGG | - | chr7_3:3793205-3793224 | None:intergenic | 40.0% | |
| AAATTTGCCTTTGCCAAGGA+CGG | - | chr7_3:3793255-3793274 | None:intergenic | 40.0% | |
| CAATCATGTAGAACCCACTT+TGG | - | chr7_3:3793407-3793426 | None:intergenic | 40.0% | |
| ! | CAAAGTGGGTTCTACATGAT+TGG | + | chr7_3:3793405-3793424 | Msa1090110:intron | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr7_3:3793555-3793574 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr7_3:3793556-3793575 | Msa1090110:CDS | 40.0% | |
| ATTAACACGAGGTGAACTCT+TGG | - | chr7_3:3791979-3791998 | None:intergenic | 40.0% | |
| GTAGATGCAATCCACAAACA+TGG | + | chr7_3:3792274-3792293 | Msa1090110:CDS | 40.0% | |
| !! | TCATTGGCTTTCCATGTTTG+TGG | - | chr7_3:3792288-3792307 | None:intergenic | 40.0% |
| GCTAATTCAGGAACAGTCAT+TGG | - | chr7_3:3792304-3792323 | None:intergenic | 40.0% | |
| ACTAACAAGTGGTGCAAAAC+AGG | - | chr7_3:3792482-3792501 | None:intergenic | 40.0% | |
| !! | TGTTTTGCACCACTTGTTAG+TGG | + | chr7_3:3792481-3792500 | Msa1090110:CDS | 40.0% |
| ATCCATGTTCTCTGGATATG+TGG | + | chr7_3:3792512-3792531 | Msa1090110:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr7_3:3792542-3792561 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr7_3:3792540-3792559 | Msa1090110:CDS | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | + | chr7_3:3792573-3792592 | Msa1090110:CDS | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | + | chr7_3:3792574-3792593 | Msa1090110:CDS | 40.0% |
| ! | CACTCTATGAAAGTGCAATG+GGG | + | chr7_3:3792575-3792594 | Msa1090110:CDS | 40.0% |
| ! | ACTCTATGAAAGTGCAATGG+GGG | + | chr7_3:3792576-3792595 | Msa1090110:CDS | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | - | chr7_3:3792714-3792733 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | + | chr7_3:3792717-3792736 | Msa1090110:CDS | 40.0% |
| ! | GAATCTTTGGTTGATGTAGC+AGG | + | chr7_3:3792730-3792749 | Msa1090110:CDS | 40.0% |
| !!! | CACAGTTTTAGATCAACCAC+AGG | + | chr7_3:3792807-3792826 | Msa1090110:CDS | 40.0% |
| TTTAGATCAACCACAGGTTG+TGG | + | chr7_3:3792813-3792832 | Msa1090110:CDS | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr7_3:3792901-3792920 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr7_3:3792900-3792919 | Msa1090110:CDS | 40.0% |
| ATCCACTCACATGTGATTGA+GGG | - | chr7_3:3793011-3793030 | None:intergenic | 40.0% | |
| TGGGAAACCAACAATTGACA+GGG | - | chr7_3:3793205-3793224 | None:intergenic | 40.0% | |
| AAATTTGCCTTTGCCAAGGA+CGG | - | chr7_3:3793255-3793274 | None:intergenic | 40.0% | |
| CAATCATGTAGAACCCACTT+TGG | - | chr7_3:3793407-3793426 | None:intergenic | 40.0% | |
| ! | CAAAGTGGGTTCTACATGAT+TGG | + | chr7_3:3793405-3793424 | Msa1090110:intron | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr7_3:3793555-3793574 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr7_3:3793556-3793575 | Msa1090110:CDS | 40.0% | |
| CTCAAATCAGCTGTGGAACT+AGG | + | chr7_3:3792247-3792266 | Msa1090110:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr7_3:3792363-3792382 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr7_3:3792448-3792467 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr7_3:3792451-3792470 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr7_3:3792448-3792467 | Msa1090110:CDS | 45.0% | |
| ! | TGAAGCACTCCACTAACAAG+TGG | - | chr7_3:3792493-3792512 | None:intergenic | 45.0% |
| AGTGCTTCATCCATGTTCTC+TGG | + | chr7_3:3792504-3792523 | Msa1090110:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr7_3:3792517-3792536 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr7_3:3792530-3792549 | Msa1090110:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr7_3:3792546-3792565 | Msa1090110:CDS | 45.0% |
| !! | TAGTTTGTTTCAAGGGGCCA+TGG | + | chr7_3:3792645-3792664 | Msa1090110:CDS | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | - | chr7_3:3792665-3792684 | None:intergenic | 45.0% | |
| ! | TCTTTGGTTGATGTAGCAGG+TGG | + | chr7_3:3792733-3792752 | Msa1090110:CDS | 45.0% |
| ! | CTTTGGTTGATGTAGCAGGT+GGG | + | chr7_3:3792734-3792753 | Msa1090110:CDS | 45.0% |
| GATAAGTTAGCCACAACCTG+TGG | - | chr7_3:3792826-3792845 | None:intergenic | 45.0% | |
| CAGGTTGTGGCTAACTTATC+TGG | + | chr7_3:3792826-3792845 | Msa1090110:CDS | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr7_3:3792897-3792916 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr7_3:3792898-3792917 | None:intergenic | 45.0% | |
| GATCCACTCACATGTGATTG+AGG | - | chr7_3:3793012-3793031 | None:intergenic | 45.0% | |
| TTACCATGAGCAACAATCCC+TGG | + | chr7_3:3793116-3793135 | Msa1090110:intron | 45.0% | |
| TCATAGAAGGTCGTTTGCCA+GGG | - | chr7_3:3793162-3793181 | None:intergenic | 45.0% | |
| TTCATAGAAGGTCGTTTGCC+AGG | - | chr7_3:3793163-3793182 | None:intergenic | 45.0% | |
| GGGAAACCAACAATTGACAG+GGG | - | chr7_3:3793204-3793223 | None:intergenic | 45.0% | |
| CTGGGAAACCAACAATTGAC+AGG | - | chr7_3:3793206-3793225 | None:intergenic | 45.0% | |
| TTTGATAGGGATTCCGTCCT+TGG | + | chr7_3:3793239-3793258 | Msa1090110:intron | 45.0% | |
| AGAGACTTGAAGCCGCATAT+TGG | - | chr7_3:3793674-3793693 | None:intergenic | 45.0% | |
| CTCAAATCAGCTGTGGAACT+AGG | + | chr7_3:3792247-3792266 | Msa1090110:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr7_3:3792363-3792382 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr7_3:3792448-3792467 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr7_3:3792451-3792470 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr7_3:3792448-3792467 | Msa1090110:CDS | 45.0% | |
| ! | TGAAGCACTCCACTAACAAG+TGG | - | chr7_3:3792493-3792512 | None:intergenic | 45.0% |
| AGTGCTTCATCCATGTTCTC+TGG | + | chr7_3:3792504-3792523 | Msa1090110:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr7_3:3792517-3792536 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr7_3:3792530-3792549 | Msa1090110:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr7_3:3792546-3792565 | Msa1090110:CDS | 45.0% |
| !! | TAGTTTGTTTCAAGGGGCCA+TGG | + | chr7_3:3792645-3792664 | Msa1090110:CDS | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | - | chr7_3:3792665-3792684 | None:intergenic | 45.0% | |
| ! | TCTTTGGTTGATGTAGCAGG+TGG | + | chr7_3:3792733-3792752 | Msa1090110:CDS | 45.0% |
| ! | CTTTGGTTGATGTAGCAGGT+GGG | + | chr7_3:3792734-3792753 | Msa1090110:CDS | 45.0% |
| GATAAGTTAGCCACAACCTG+TGG | - | chr7_3:3792826-3792845 | None:intergenic | 45.0% | |
| CAGGTTGTGGCTAACTTATC+TGG | + | chr7_3:3792826-3792845 | Msa1090110:CDS | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr7_3:3792897-3792916 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr7_3:3792898-3792917 | None:intergenic | 45.0% | |
| GATCCACTCACATGTGATTG+AGG | - | chr7_3:3793012-3793031 | None:intergenic | 45.0% | |
| TTACCATGAGCAACAATCCC+TGG | + | chr7_3:3793116-3793135 | Msa1090110:intron | 45.0% | |
| TCATAGAAGGTCGTTTGCCA+GGG | - | chr7_3:3793162-3793181 | None:intergenic | 45.0% | |
| TTCATAGAAGGTCGTTTGCC+AGG | - | chr7_3:3793163-3793182 | None:intergenic | 45.0% | |
| GGGAAACCAACAATTGACAG+GGG | - | chr7_3:3793204-3793223 | None:intergenic | 45.0% | |
| CTGGGAAACCAACAATTGAC+AGG | - | chr7_3:3793206-3793225 | None:intergenic | 45.0% | |
| TTTGATAGGGATTCCGTCCT+TGG | + | chr7_3:3793239-3793258 | Msa1090110:intron | 45.0% | |
| AGAGACTTGAAGCCGCATAT+TGG | - | chr7_3:3793674-3793693 | None:intergenic | 45.0% | |
| !! | CACAGCTGATTTGAGTGCCA+TGG | - | chr7_3:3792242-3792261 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | + | chr7_3:3792240-3792259 | Msa1090110:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr7_3:3792373-3792392 | Msa1090110:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr7_3:3792703-3792722 | Msa1090110:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | + | chr7_3:3792708-3792727 | Msa1090110:CDS | 50.0% | |
| TGCCCTCAATCACATGTGAG+TGG | + | chr7_3:3793006-3793025 | Msa1090110:intron | 50.0% | |
| TTGCCAGGGATTGTTGCTCA+TGG | - | chr7_3:3793122-3793141 | None:intergenic | 50.0% | |
| CAATCCCTGGCAAAATTGCC+AGG | + | chr7_3:3793129-3793148 | Msa1090110:intron | 50.0% | |
| ! | TGCTCCTGGCAATTTTGCCA+GGG | - | chr7_3:3793136-3793155 | None:intergenic | 50.0% |
| ! | TTGCTCCTGGCAATTTTGCC+AGG | - | chr7_3:3793137-3793156 | None:intergenic | 50.0% |
| TGGCAAAATTGCCAGGAGCA+AGG | + | chr7_3:3793136-3793155 | Msa1090110:intron | 50.0% | |
| CAATGGCCCCTGTCAATTGT+TGG | + | chr7_3:3793195-3793214 | Msa1090110:intron | 50.0% | |
| !! | CACAGCTGATTTGAGTGCCA+TGG | - | chr7_3:3792242-3792261 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | + | chr7_3:3792240-3792259 | Msa1090110:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr7_3:3792373-3792392 | Msa1090110:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr7_3:3792703-3792722 | Msa1090110:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | + | chr7_3:3792708-3792727 | Msa1090110:CDS | 50.0% | |
| TGCCCTCAATCACATGTGAG+TGG | + | chr7_3:3793006-3793025 | Msa1090110:intron | 50.0% | |
| TTGCCAGGGATTGTTGCTCA+TGG | - | chr7_3:3793122-3793141 | None:intergenic | 50.0% | |
| CAATCCCTGGCAAAATTGCC+AGG | + | chr7_3:3793129-3793148 | Msa1090110:intron | 50.0% | |
| ! | TGCTCCTGGCAATTTTGCCA+GGG | - | chr7_3:3793136-3793155 | None:intergenic | 50.0% |
| ! | TTGCTCCTGGCAATTTTGCC+AGG | - | chr7_3:3793137-3793156 | None:intergenic | 50.0% |
| TGGCAAAATTGCCAGGAGCA+AGG | + | chr7_3:3793136-3793155 | Msa1090110:intron | 50.0% | |
| CAATGGCCCCTGTCAATTGT+TGG | + | chr7_3:3793195-3793214 | Msa1090110:intron | 50.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr7_3:3792702-3792721 | Msa1090110:CDS | 55.0% | |
| GTTGATGTAGCAGGTGGGAC+TGG | + | chr7_3:3792739-3792758 | Msa1090110:CDS | 55.0% | |
| CATCTGCAGGAGGGATAGAC+TGG | - | chr7_3:3792888-3792907 | None:intergenic | 55.0% | |
| AGGGATTCCGTCCTTGGCAA+AGG | + | chr7_3:3793245-3793264 | Msa1090110:intron | 55.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr7_3:3792702-3792721 | Msa1090110:CDS | 55.0% | |
| GTTGATGTAGCAGGTGGGAC+TGG | + | chr7_3:3792739-3792758 | Msa1090110:CDS | 55.0% | |
| CATCTGCAGGAGGGATAGAC+TGG | - | chr7_3:3792888-3792907 | None:intergenic | 55.0% | |
| AGGGATTCCGTCCTTGGCAA+AGG | + | chr7_3:3793245-3793264 | Msa1090110:intron | 55.0% | |
| AATTGCCAGGAGCAAGGCCC+TGG | + | chr7_3:3793142-3793161 | Msa1090110:intron | 60.0% | |
| AATTGCCAGGAGCAAGGCCC+TGG | + | chr7_3:3793142-3793161 | Msa1090110:intron | 60.0% | |
| GTTTGCCAGGGCCTTGCTCC+TGG | - | chr7_3:3793150-3793169 | None:intergenic | 65.0% | |
| GTTTGCCAGGGCCTTGCTCC+TGG | - | chr7_3:3793150-3793169 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 3791977 | 3793860 | 3791977 | ID=Msa1090110;Name=Msa1090110 |
| chr7_3 | mRNA | 3791977 | 3793860 | 3791977 | ID=Msa1090110-mRNA-1;Parent=Msa1090110;Name=Msa1090110-mRNA-1;_AED=0.22;_eAED=0.22;_QI=174|1|1|1|1|1|2|148|357 |
| chr7_3 | exon | 3791977 | 3792921 | 3791977 | ID=Msa1090110-mRNA-1:exon:1486;Parent=Msa1090110-mRNA-1 |
| chr7_3 | exon | 3793410 | 3793860 | 3793410 | ID=Msa1090110-mRNA-1:exon:1487;Parent=Msa1090110-mRNA-1 |
| chr7_3 | five_prime_UTR | 3791977 | 3792150 | 3791977 | ID=Msa1090110-mRNA-1:five_prime_utr;Parent=Msa1090110-mRNA-1 |
| chr7_3 | CDS | 3792151 | 3792921 | 3792151 | ID=Msa1090110-mRNA-1:cds;Parent=Msa1090110-mRNA-1 |
| chr7_3 | CDS | 3793410 | 3793712 | 3793410 | ID=Msa1090110-mRNA-1:cds;Parent=Msa1090110-mRNA-1 |
| chr7_3 | three_prime_UTR | 3793713 | 3793860 | 3793713 | ID=Msa1090110-mRNA-1:three_prime_utr;Parent=Msa1090110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
