AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0826450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826450 MtrunA17_Chr5g0447941 97.436 312 8 0 1 312 1 312 0.0 632
Msa0826450 MtrunA17_Chr5g0447951 97.115 312 9 0 1 312 1 312 0.0 631
Msa0826450 MtrunA17_Chr5g0447961 97.115 312 9 0 1 312 1 312 0.0 631
Msa0826450 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 5.38e-162 454
Msa0826450 MtrunA17_Chr1g0173621 62.623 305 111 3 1 302 1 305 3.01e-136 388
Msa0826450 MtrunA17_Chr6g0479981 49.505 303 146 5 1 300 1 299 1.03e-94 283
Msa0826450 MtrunA17_Chr6g0480011 49.355 310 138 8 1 300 1 301 4.29e-94 281
Msa0826450 MtrunA17_Chr6g0480021 48.039 306 125 7 19 311 16 300 3.30e-91 273
Msa0826450 MtrunA17_Chr8g0368921 42.254 284 161 2 19 300 15 297 8.21e-74 229
Msa0826450 MtrunA17_Chr7g0239701 43.382 272 142 3 49 311 47 315 5.60e-71 222
Msa0826450 MtrunA17_Chr4g0018921 40.351 285 165 4 18 300 12 293 1.18e-70 221
Msa0826450 MtrunA17_Chr8g0368931 42.708 288 154 4 19 302 15 295 3.43e-69 218
Msa0826450 MtrunA17_Chr4g0009531 43.098 297 152 6 19 310 15 299 5.87e-66 209
Msa0826450 MtrunA17_Chr4g0009581 42.623 305 147 6 19 312 16 303 1.58e-65 208
Msa0826450 MtrunA17_Chr4g0036261 58.125 160 66 1 139 297 1 160 7.53e-59 187
Msa0826450 MtrunA17_Chr7g0243551 37.956 274 162 5 20 292 23 289 2.33e-57 187
Msa0826450 MtrunA17_Chr4g0036051 38.816 304 171 6 18 310 9 308 7.88e-57 186
Msa0826450 MtrunA17_Chr4g0036301 52.353 170 71 3 151 311 1 169 2.33e-50 164
Msa0826450 MtrunA17_Chr4g0036321 51.765 170 72 3 151 311 1 169 6.82e-49 160
Msa0826450 MtrunA17_Chr4g0009621 43.379 219 112 2 82 300 1 207 3.45e-45 153
Msa0826450 MtrunA17_Chr6g0479811 45.133 113 57 2 191 300 1 111 5.49e-25 97.1
Msa0826450 MtrunA17_Chr4g0036291 51.111 90 42 2 20 107 17 106 8.65e-24 93.6
Msa0826450 MtrunA17_Chr4g0036311 48.352 91 45 2 19 107 16 106 7.89e-23 91.3
Msa0826450 MtrunA17_Chr4g0036251 51.111 90 38 2 19 107 16 100 1.49e-22 90.1
Msa0826450 MtrunA17_Chr3g0095421 26.510 298 147 11 34 285 73 344 5.66e-17 80.5
Msa0826450 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 2.14e-16 73.6
Msa0826450 MtrunA17_Chr3g0127491 22.789 294 178 9 36 294 71 350 3.43e-14 72.4
Msa0826450 MtrunA17_Chr7g0274071 27.083 288 146 13 41 289 52 314 2.22e-13 69.7
Msa0826450 MtrunA17_Chr7g0222171 25.436 287 160 9 41 292 43 310 3.83e-12 66.2
Msa0826450 MtrunA17_Chr7g0221791 24.742 291 166 9 36 292 38 309 4.51e-11 62.8
Msa0826450 MtrunA17_Chr1g0204651 23.301 309 166 10 24 289 29 309 7.88e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826450 AT1G59960.1 54.545 308 129 6 1 300 1 305 1.67e-113 331
Msa0826450 AT1G59950.1 56.250 288 116 5 20 300 15 299 1.04e-104 309
Msa0826450 AT2G37790.1 43.706 286 150 4 19 300 15 293 1.62e-76 237
Msa0826450 AT2G37770.2 43.706 286 150 4 19 300 15 293 1.01e-75 235
Msa0826450 AT5G62420.1 42.606 284 157 4 20 300 14 294 1.44e-72 227
Msa0826450 AT2G37760.4 42.612 291 140 5 19 299 15 288 2.24e-72 225
Msa0826450 AT2G37760.3 42.612 291 140 5 19 299 15 288 2.24e-72 225
Msa0826450 AT5G01670.1 41.901 284 156 6 19 300 23 299 9.69e-72 225
Msa0826450 AT2G37760.5 43.056 288 137 5 19 296 15 285 1.68e-71 223
Msa0826450 AT2G37760.2 42.561 289 139 5 19 297 15 286 1.12e-70 222
Msa0826450 AT2G37760.1 42.561 289 139 5 19 297 15 286 1.12e-70 222
Msa0826450 AT3G53880.1 41.696 283 160 3 19 300 15 293 4.16e-69 218
Msa0826450 AT3G53880.2 41.516 277 157 3 19 294 15 287 1.14e-66 211
Msa0826450 AT5G01670.2 38.264 311 156 7 19 300 23 326 8.11e-66 210
Msa0826450 AT2G21260.1 39.100 289 161 6 18 295 9 293 3.68e-65 207
Msa0826450 AT2G21250.1 37.829 304 174 6 18 310 9 308 8.76e-64 204
Msa0826450 AT2G37760.6 42.276 246 121 4 62 297 6 240 3.52e-58 188
Msa0826450 AT2G37760.7 42.276 246 121 4 62 297 6 240 3.52e-58 188
Msa0826450 AT2G37770.1 46.701 197 95 3 19 212 15 204 3.75e-53 176
Msa0826450 AT2G21250.2 42.029 207 109 5 18 217 9 211 7.50e-47 158
Msa0826450 AT2G21260.2 35.455 220 129 6 87 295 8 225 7.13e-40 140
Msa0826450 AT1G06690.1 27.458 295 146 10 35 285 85 355 2.92e-20 90.5
Msa0826450 AT5G53580.1 24.912 285 159 10 44 290 80 347 4.00e-15 75.5
Msa0826450 AT1G60680.1 26.415 318 170 14 25 300 27 322 7.17e-14 71.6
Msa0826450 AT1G60750.1 25.177 282 161 11 44 300 50 306 2.40e-11 63.9
Msa0826450 AT1G60710.1 25.387 323 166 14 25 300 27 321 9.95e-11 62.4

Find 75 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACACAAATTT+TGG 0.147232 5_3:-66782547 None:intergenic
TTGCATTGCAAAACTCTCTA+AGG 0.274401 5_3:-66782331 None:intergenic
TAAAATACCAGAAAATAATT+TGG 0.275670 5_3:-66782823 None:intergenic
ATTATCAATGTTATTGTATT+GGG 0.287934 5_3:+66782769 Msa0826450:three_prime_UTR
TGGACTTGTACTTGATTCAT+TGG 0.300645 5_3:+66781982 Msa0826450:CDS
ATTGGAAATGTAAACTTTCC+AGG 0.312952 5_3:-66782020 None:intergenic
AATTATCAATGTTATTGTAT+TGG 0.323636 5_3:+66782768 Msa0826450:three_prime_UTR
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_3:-66781534 None:intergenic
CTTTGTCACTTCCAAACTTT+GGG 0.341927 5_3:+66781649 Msa0826450:CDS
AGGCCTGGCTTGGTTGGTCC+AGG 0.344379 5_3:-66782629 None:intergenic
AAAATTTGTGTATCTTTGAT+TGG 0.361005 5_3:+66782549 Msa0826450:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_3:-66781488 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 5_3:+66782063 Msa0826450:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_3:+66782110 Msa0826450:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 5_3:-66782062 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 5_3:-66782038 None:intergenic
TCTTTGTCACTTCCAAACTT+TGG 0.379540 5_3:+66781648 Msa0826450:CDS
TCATTCTCCATAACCTCATT+TGG 0.392662 5_3:-66782407 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_3:+66782468 Msa0826450:CDS
TCTTTCCTTATCATAACTCT+TGG 0.404407 5_3:-66782519 None:intergenic
CAGAGGACCAAATGAGGTTA+TGG 0.408273 5_3:+66782400 Msa0826450:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 5_3:+66782064 Msa0826450:CDS
TTGAAAGAGGCAGTTGAACT+TGG 0.422526 5_3:+66781605 Msa0826450:CDS
TGTTCCCAAGAGTTATGATA+AGG 0.428240 5_3:+66782514 Msa0826450:CDS
TTTGATACTGCTGCTGCCTA+TGG 0.438326 5_3:+66781557 Msa0826450:CDS
TCATTGAGGCCTGGCTTGGT+TGG 0.438358 5_3:-66782635 None:intergenic
CTTTCCTTATCATAACTCTT+GGG 0.442857 5_3:-66782518 None:intergenic
AAGCAAAATCGTTTGATCCC+TGG 0.455139 5_3:+66782611 Msa0826450:CDS
ACTACCCATGTTGTTGTTGT+TGG 0.457212 5_3:-66781390 None:intergenic
CTACCCATGTTGTTGTTGTT+GGG 0.465224 5_3:-66781389 None:intergenic
GACTCTTCAACTAGACTACT+TGG 0.469433 5_3:+66781962 Msa0826450:CDS
GAGGTCATTGAGGCCTGGCT+TGG 0.476217 5_3:-66782639 None:intergenic
TGTTGGTAAGAACCTTTGTT+GGG 0.483158 5_3:-66781421 None:intergenic
ATCCCTGGACCAACCAAGCC+AGG 0.483424 5_3:+66782626 Msa0826450:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_3:-66782090 None:intergenic
GGCCTGGCTTGGTTGGTCCA+GGG 0.485174 5_3:-66782628 None:intergenic
TGAATTACTTGATTGACTGC+TGG 0.489360 5_3:-66782191 None:intergenic
TATGGTTCAGAACAAGCTCT+TGG 0.489964 5_3:+66781575 Msa0826450:CDS
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_3:+66782092 Msa0826450:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.502044 5_3:+66781592 Msa0826450:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_3:-66781487 None:intergenic
GTGTTGGTAAGAACCTTTGT+TGG 0.513012 5_3:-66781422 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 5_3:+66782056 Msa0826450:CDS
AAGAGCTTGTTCTGAACCAT+AGG 0.526693 5_3:-66781573 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.533175 5_3:+66781457 Msa0826450:CDS
TCATAGAGGTCATTGAGGCC+TGG 0.545875 5_3:-66782644 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.552845 5_3:+66781458 Msa0826450:CDS
AAGGTTCTTACCAACACTCC+TGG 0.555463 5_3:+66781428 Msa0826450:CDS
CATTCCCAACAACAACAACA+TGG 0.564775 5_3:+66781385 Msa0826450:exon
CTTCAGTTGACCAGGAGTGT+TGG 0.569334 5_3:-66781438 None:intergenic
TTGACATTTAGTCATCATAG+AGG 0.571928 5_3:-66782658 None:intergenic
GCTGATCCCATTCCAACCAC+AGG 0.587516 5_3:-66781464 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_3:+66781524 Msa0826450:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5_3:+66782073 Msa0826450:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5_3:+66782482 Msa0826450:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.589452 5_3:-66782380 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.591438 5_3:+66782297 Msa0826450:intron
TGCAAGCAGAGGACCAAATG+AGG 0.592065 5_3:+66782394 Msa0826450:CDS
ACAGGCATCTTCAGTTGACC+AGG 0.593409 5_3:-66781446 None:intergenic
CAACTGAAGATGCCTGTGGT+TGG 0.604555 5_3:+66781452 Msa0826450:CDS
AGTCATCATAGAGGTCATTG+AGG 0.605914 5_3:-66782649 None:intergenic
GTTTACATTTCCAATTGATG+TGG 0.608506 5_3:+66782028 Msa0826450:CDS
TGGTCAACTGAAGATGCCTG+TGG 0.614136 5_3:+66781448 Msa0826450:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_3:-66781486 None:intergenic
TGGCCACTTAGTTCTCAACC+TGG 0.621982 5_3:+66782002 Msa0826450:CDS
TTCAAAGCTCGAAAGAAACA+AGG 0.626557 5_3:-66782747 None:intergenic
TTTCCAGGTTGAGAACTAAG+TGG 0.629025 5_3:-66782005 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5_3:+66782437 Msa0826450:CDS
AGAGCAGGAATAACAAGATG+AGG 0.638684 5_3:-66781686 None:intergenic
TTGAGGAAAGGTGCAAGCAG+AGG 0.639249 5_3:+66782383 Msa0826450:CDS
TTCAGAACAAGCTCTTGGAG+AGG 0.639658 5_3:+66781580 Msa0826450:CDS
TAGTGTTGAAATCCCAACAA+AGG 0.659490 5_3:+66781409 Msa0826450:CDS
ATTCCCAACAACAACAACAT+GGG 0.689034 5_3:+66781386 Msa0826450:exon
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5_3:+66782076 Msa0826450:CDS
ATTGACTGCTGGAAGAACAG+TGG 0.720759 5_3:-66782180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATCAATGTTATTGTAT+TGG + chr5_3:66782768-66782787 Msa0826450:three_prime_UTR 15.0%
!! ATTATCAATGTTATTGTATT+GGG + chr5_3:66782769-66782788 Msa0826450:three_prime_UTR 15.0%
!! TAAAATACCAGAAAATAATT+TGG - chr5_3:66782826-66782845 None:intergenic 15.0%
!! AATTATCAATGTTATTGTAT+TGG + chr5_3:66782768-66782787 Msa0826450:three_prime_UTR 15.0%
!! ATTATCAATGTTATTGTATT+GGG + chr5_3:66782769-66782788 Msa0826450:three_prime_UTR 15.0%
!! TAAAATACCAGAAAATAATT+TGG - chr5_3:66782826-66782845 None:intergenic 15.0%
!! CAAAAAGTTAATCAAAACTT+AGG - chr5_3:66782226-66782245 None:intergenic 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr5_3:66782550-66782569 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr5_3:66782549-66782568 Msa0826450:CDS 20.0%
!!! ATTTTCTCCAAATTATTTTC+TGG + chr5_3:66782816-66782835 Msa0826450:three_prime_UTR 20.0%
!! CAAAAAGTTAATCAAAACTT+AGG - chr5_3:66782226-66782245 None:intergenic 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr5_3:66782550-66782569 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr5_3:66782549-66782568 Msa0826450:CDS 20.0%
!!! ATTTTCTCCAAATTATTTTC+TGG + chr5_3:66782816-66782835 Msa0826450:three_prime_UTR 20.0%
! TACACTTATTGAGATTAAAC+TGG + chr5_3:66781920-66781939 Msa0826450:intron 25.0%
! CAATGAACTCATATATTTAC+AGG + chr5_3:66782277-66782296 Msa0826450:intron 25.0%
! TACACTTATTGAGATTAAAC+TGG + chr5_3:66781920-66781939 Msa0826450:intron 25.0%
! CAATGAACTCATATATTTAC+AGG + chr5_3:66782277-66782296 Msa0826450:intron 25.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr5_3:66781663-66781682 None:intergenic 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr5_3:66782023-66782042 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr5_3:66782028-66782047 Msa0826450:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_3:66782064-66782083 Msa0826450:CDS 30.0%
TGAACTCATATATTTACAGG+TGG + chr5_3:66782280-66782299 Msa0826450:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_3:66782468-66782487 Msa0826450:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr5_3:66782521-66782540 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr5_3:66782522-66782541 None:intergenic 30.0%
TTGACATTTAGTCATCATAG+AGG - chr5_3:66782661-66782680 None:intergenic 30.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr5_3:66781663-66781682 None:intergenic 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr5_3:66782023-66782042 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr5_3:66782028-66782047 Msa0826450:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_3:66782064-66782083 Msa0826450:CDS 30.0%
TGAACTCATATATTTACAGG+TGG + chr5_3:66782280-66782299 Msa0826450:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_3:66782468-66782487 Msa0826450:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr5_3:66782521-66782540 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr5_3:66782522-66782541 None:intergenic 30.0%
TTGACATTTAGTCATCATAG+AGG - chr5_3:66782661-66782680 None:intergenic 30.0%
ATTCCCAACAACAACAACAT+GGG + chr5_3:66781386-66781405 Msa0826450:exon 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr5_3:66781409-66781428 Msa0826450:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr5_3:66781424-66781443 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_3:66781489-66781508 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_3:66781490-66781509 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_3:66781491-66781510 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_3:66781524-66781543 Msa0826450:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_3:66781537-66781556 None:intergenic 35.0%
! TCTTTGTCACTTCCAAACTT+TGG + chr5_3:66781648-66781667 Msa0826450:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG + chr5_3:66781649-66781668 Msa0826450:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG - chr5_3:66781704-66781723 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr5_3:66781982-66782001 Msa0826450:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_3:66782056-66782075 Msa0826450:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_3:66782065-66782084 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_3:66782063-66782082 Msa0826450:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG - chr5_3:66782194-66782213 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG - chr5_3:66782334-66782353 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG + chr5_3:66782335-66782354 Msa0826450:CDS 35.0%
TCATTCTCCATAACCTCATT+TGG - chr5_3:66782410-66782429 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_3:66782482-66782501 Msa0826450:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr5_3:66782514-66782533 Msa0826450:CDS 35.0%
TTCAAAGCTCGAAAGAAACA+AGG - chr5_3:66782750-66782769 None:intergenic 35.0%
ATTCCCAACAACAACAACAT+GGG + chr5_3:66781386-66781405 Msa0826450:exon 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr5_3:66781409-66781428 Msa0826450:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr5_3:66781424-66781443 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_3:66781489-66781508 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_3:66781490-66781509 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_3:66781491-66781510 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_3:66781524-66781543 Msa0826450:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_3:66781537-66781556 None:intergenic 35.0%
! TCTTTGTCACTTCCAAACTT+TGG + chr5_3:66781648-66781667 Msa0826450:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG + chr5_3:66781649-66781668 Msa0826450:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG - chr5_3:66781704-66781723 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr5_3:66781982-66782001 Msa0826450:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_3:66782056-66782075 Msa0826450:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_3:66782065-66782084 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_3:66782063-66782082 Msa0826450:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG - chr5_3:66782194-66782213 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG - chr5_3:66782334-66782353 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG + chr5_3:66782335-66782354 Msa0826450:CDS 35.0%
TCATTCTCCATAACCTCATT+TGG - chr5_3:66782410-66782429 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_3:66782482-66782501 Msa0826450:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr5_3:66782514-66782533 Msa0826450:CDS 35.0%
TTCAAAGCTCGAAAGAAACA+AGG - chr5_3:66782750-66782769 None:intergenic 35.0%
CATTCCCAACAACAACAACA+TGG + chr5_3:66781385-66781404 Msa0826450:exon 40.0%
! CTACCCATGTTGTTGTTGTT+GGG - chr5_3:66781392-66781411 None:intergenic 40.0%
! ACTACCCATGTTGTTGTTGT+TGG - chr5_3:66781393-66781412 None:intergenic 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr5_3:66781425-66781444 None:intergenic 40.0%
! AAGAGCTTGTTCTGAACCAT+AGG - chr5_3:66781576-66781595 None:intergenic 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr5_3:66781575-66781594 Msa0826450:CDS 40.0%
TTGAAAGAGGCAGTTGAACT+TGG + chr5_3:66781605-66781624 Msa0826450:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_3:66781689-66781708 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr5_3:66781940-66781959 Msa0826450:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_3:66781962-66781981 Msa0826450:CDS 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG - chr5_3:66782008-66782027 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_3:66782041-66782060 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_3:66782093-66782112 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_3:66782092-66782111 Msa0826450:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_3:66782110-66782129 Msa0826450:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_3:66782437-66782456 Msa0826450:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_3:66782611-66782630 Msa0826450:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG - chr5_3:66782652-66782671 None:intergenic 40.0%
CATTCCCAACAACAACAACA+TGG + chr5_3:66781385-66781404 Msa0826450:exon 40.0%
! CTACCCATGTTGTTGTTGTT+GGG - chr5_3:66781392-66781411 None:intergenic 40.0%
! ACTACCCATGTTGTTGTTGT+TGG - chr5_3:66781393-66781412 None:intergenic 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr5_3:66781425-66781444 None:intergenic 40.0%
! AAGAGCTTGTTCTGAACCAT+AGG - chr5_3:66781576-66781595 None:intergenic 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr5_3:66781575-66781594 Msa0826450:CDS 40.0%
TTGAAAGAGGCAGTTGAACT+TGG + chr5_3:66781605-66781624 Msa0826450:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_3:66781689-66781708 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr5_3:66781940-66781959 Msa0826450:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_3:66781962-66781981 Msa0826450:CDS 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG - chr5_3:66782008-66782027 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_3:66782041-66782060 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_3:66782093-66782112 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_3:66782092-66782111 Msa0826450:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_3:66782110-66782129 Msa0826450:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_3:66782437-66782456 Msa0826450:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_3:66782611-66782630 Msa0826450:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG - chr5_3:66782652-66782671 None:intergenic 40.0%
AAGGTTCTTACCAACACTCC+TGG + chr5_3:66781428-66781447 Msa0826450:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_3:66781458-66781477 Msa0826450:CDS 45.0%
TTTGATACTGCTGCTGCCTA+TGG + chr5_3:66781557-66781576 Msa0826450:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG + chr5_3:66781580-66781599 Msa0826450:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_3:66781592-66781611 Msa0826450:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_3:66782073-66782092 Msa0826450:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG - chr5_3:66782183-66782202 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG - chr5_3:66782313-66782332 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG + chr5_3:66782400-66782419 Msa0826450:CDS 45.0%
AAGGTTCTTACCAACACTCC+TGG + chr5_3:66781428-66781447 Msa0826450:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_3:66781458-66781477 Msa0826450:CDS 45.0%
TTTGATACTGCTGCTGCCTA+TGG + chr5_3:66781557-66781576 Msa0826450:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG + chr5_3:66781580-66781599 Msa0826450:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_3:66781592-66781611 Msa0826450:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_3:66782073-66782092 Msa0826450:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG - chr5_3:66782183-66782202 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG - chr5_3:66782313-66782332 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG + chr5_3:66782400-66782419 Msa0826450:CDS 45.0%
! CTTCAGTTGACCAGGAGTGT+TGG - chr5_3:66781441-66781460 None:intergenic 50.0%
ACAGGCATCTTCAGTTGACC+AGG - chr5_3:66781449-66781468 None:intergenic 50.0%
TGGTCAACTGAAGATGCCTG+TGG + chr5_3:66781448-66781467 Msa0826450:CDS 50.0%
CAACTGAAGATGCCTGTGGT+TGG + chr5_3:66781452-66781471 Msa0826450:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_3:66781457-66781476 Msa0826450:CDS 50.0%
! TGGCCACTTAGTTCTCAACC+TGG + chr5_3:66782002-66782021 Msa0826450:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_3:66782076-66782095 Msa0826450:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_3:66782297-66782316 Msa0826450:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG + chr5_3:66782366-66782385 Msa0826450:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_3:66782383-66782402 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG + chr5_3:66782383-66782402 Msa0826450:CDS 50.0%
TGCAAGCAGAGGACCAAATG+AGG + chr5_3:66782394-66782413 Msa0826450:CDS 50.0%
TCATAGAGGTCATTGAGGCC+TGG - chr5_3:66782647-66782666 None:intergenic 50.0%
! CTTCAGTTGACCAGGAGTGT+TGG - chr5_3:66781441-66781460 None:intergenic 50.0%
ACAGGCATCTTCAGTTGACC+AGG - chr5_3:66781449-66781468 None:intergenic 50.0%
TGGTCAACTGAAGATGCCTG+TGG + chr5_3:66781448-66781467 Msa0826450:CDS 50.0%
CAACTGAAGATGCCTGTGGT+TGG + chr5_3:66781452-66781471 Msa0826450:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_3:66781457-66781476 Msa0826450:CDS 50.0%
! TGGCCACTTAGTTCTCAACC+TGG + chr5_3:66782002-66782021 Msa0826450:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_3:66782076-66782095 Msa0826450:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_3:66782297-66782316 Msa0826450:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG + chr5_3:66782366-66782385 Msa0826450:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_3:66782383-66782402 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG + chr5_3:66782383-66782402 Msa0826450:CDS 50.0%
TGCAAGCAGAGGACCAAATG+AGG + chr5_3:66782394-66782413 Msa0826450:CDS 50.0%
TCATAGAGGTCATTGAGGCC+TGG - chr5_3:66782647-66782666 None:intergenic 50.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_3:66781467-66781486 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG + chr5_3:66782371-66782390 Msa0826450:CDS 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG - chr5_3:66782638-66782657 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_3:66781467-66781486 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG + chr5_3:66782371-66782390 Msa0826450:CDS 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG - chr5_3:66782638-66782657 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+AGG + chr5_3:66782626-66782645 Msa0826450:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG - chr5_3:66782642-66782661 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+AGG + chr5_3:66782626-66782645 Msa0826450:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG - chr5_3:66782642-66782661 None:intergenic 60.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG - chr5_3:66782631-66782650 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG - chr5_3:66782632-66782651 None:intergenic 65.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG - chr5_3:66782631-66782650 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG - chr5_3:66782632-66782651 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 66781344 66782849 66781344 ID=Msa0826450;Name=Msa0826450
chr5_3 mRNA 66781344 66782849 66781344 ID=Msa0826450-mRNA-1;Parent=Msa0826450;Name=Msa0826450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=60|1|1|1|1|1|3|176|312
chr5_3 exon 66781344 66781723 66781344 ID=Msa0826450-mRNA-1:exon:20928;Parent=Msa0826450-mRNA-1
chr5_3 exon 66781962 66782205 66781962 ID=Msa0826450-mRNA-1:exon:20929;Parent=Msa0826450-mRNA-1
chr5_3 exon 66782299 66782849 66782299 ID=Msa0826450-mRNA-1:exon:20930;Parent=Msa0826450-mRNA-1
chr5_3 five_prime_UTR 66781344 66781403 66781344 ID=Msa0826450-mRNA-1:five_prime_utr;Parent=Msa0826450-mRNA-1
chr5_3 CDS 66781404 66781723 66781404 ID=Msa0826450-mRNA-1:cds;Parent=Msa0826450-mRNA-1
chr5_3 CDS 66781962 66782205 66781962 ID=Msa0826450-mRNA-1:cds;Parent=Msa0826450-mRNA-1
chr5_3 CDS 66782299 66782673 66782299 ID=Msa0826450-mRNA-1:cds;Parent=Msa0826450-mRNA-1
chr5_3 three_prime_UTR 66782674 66782849 66782674 ID=Msa0826450-mRNA-1:three_prime_utr;Parent=Msa0826450-mRNA-1
Gene Sequence

>Msa0826450

ATGGGTAGTGTTGAAATCCCAACAAAGGTTCTTACCAACACTCCTGGTCAACTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCCTATGGTTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAGTTGAACTTGGTCTTGTCACTAGAGAAGAACTCTTTGTCACTTCCAAACTTTGGGTTACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTACAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAACCTGGAAAGTTTACATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCAGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAACCTTAGAGAGTTTTGCAATGCAAATGGAATAGTGTTAACTGCGTTTTCGCCGTTGAGGAAAGGTGCAAGCAGAGGACCAAATGAGGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGTTATGATAAGGAAAGAATGAACCAAAATTTGTGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATCGATCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCAGGCCTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0826450

MGSVEIPTKVLTNTPGQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAVELGLVTREELFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFTFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKNLREFCNANGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLCIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*