AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0826380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826380 MtrunA17_Chr5g0447941 90.705 312 11 2 1 294 1 312 0.0 549
Msa0826380 MtrunA17_Chr5g0447951 90.385 312 12 2 1 294 1 312 0.0 548
Msa0826380 MtrunA17_Chr5g0447961 90.385 312 12 2 1 294 1 312 0.0 548
Msa0826380 MtrunA17_Chr3g0121001 61.039 308 101 1 6 294 7 314 5.73e-140 397
Msa0826380 MtrunA17_Chr1g0173621 56.393 305 112 4 1 284 1 305 1.20e-115 335
Msa0826380 MtrunA17_Chr6g0480021 48.611 288 132 6 19 293 16 300 2.49e-89 268
Msa0826380 MtrunA17_Chr6g0480011 45.484 310 132 9 1 282 1 301 8.77e-81 247
Msa0826380 MtrunA17_Chr6g0479981 44.371 302 145 4 1 282 1 299 1.24e-79 244
Msa0826380 MtrunA17_Chr8g0368921 38.028 284 155 4 19 282 15 297 2.57e-60 194
Msa0826380 MtrunA17_Chr4g0036261 54.396 182 73 3 121 293 1 181 2.55e-59 187
Msa0826380 MtrunA17_Chr4g0018921 36.634 303 165 7 18 294 12 313 6.11e-58 188
Msa0826380 MtrunA17_Chr7g0239701 39.706 272 134 5 49 293 47 315 2.07e-56 184
Msa0826380 MtrunA17_Chr8g0368931 38.889 288 147 6 19 284 15 295 8.76e-56 182
Msa0826380 MtrunA17_Chr4g0009581 38.361 305 142 8 19 294 16 303 7.67e-53 174
Msa0826380 MtrunA17_Chr4g0009531 38.328 287 144 7 19 282 15 291 9.15e-51 169
Msa0826380 MtrunA17_Chr4g0036301 52.353 170 71 3 133 293 1 169 1.04e-50 165
Msa0826380 MtrunA17_Chr4g0036321 51.765 170 72 3 133 293 1 169 2.80e-49 161
Msa0826380 MtrunA17_Chr4g0036051 33.115 305 175 6 15 292 6 308 3.35e-44 152
Msa0826380 MtrunA17_Chr7g0243551 33.942 274 155 7 20 274 23 289 9.92e-44 151
Msa0826380 MtrunA17_Chr4g0009621 41.209 182 95 2 101 282 38 207 6.60e-41 141
Msa0826380 MtrunA17_Chr6g0479811 45.133 113 57 2 173 282 1 111 4.31e-25 97.1
Msa0826380 MtrunA17_Chr6g0479791 49.412 85 32 3 219 293 18 101 1.56e-16 73.9
Msa0826380 MtrunA17_Chr3g0095421 24.233 326 149 11 16 267 43 344 2.18e-13 69.7
Msa0826380 MtrunA17_Chr4g0036251 42.169 83 40 2 1 83 1 75 1.11e-12 63.2
Msa0826380 MtrunA17_Chr4g0036311 38.095 84 48 2 1 83 1 81 1.90e-12 62.8
Msa0826380 MtrunA17_Chr4g0036291 43.077 65 36 1 20 83 17 81 2.44e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826380 AT1G59960.1 49.351 308 127 7 1 282 1 305 2.53e-96 287
Msa0826380 AT1G59950.1 47.603 292 117 6 20 282 15 299 5.86e-88 265
Msa0826380 AT2G37790.1 39.161 286 145 6 19 282 15 293 7.35e-61 196
Msa0826380 AT5G62420.1 38.652 282 153 4 20 282 14 294 3.75e-60 194
Msa0826380 AT2G37770.2 38.811 286 146 6 19 282 15 293 8.81e-60 193
Msa0826380 AT2G37760.4 38.488 291 134 7 19 281 15 288 1.83e-57 186
Msa0826380 AT2G37760.3 38.488 291 134 7 19 281 15 288 1.83e-57 186
Msa0826380 AT2G37760.5 38.889 288 131 7 19 278 15 285 1.59e-56 184
Msa0826380 AT5G01670.1 36.042 283 156 6 19 282 23 299 9.51e-56 183
Msa0826380 AT2G37760.2 38.408 289 133 7 19 279 15 286 1.22e-55 182
Msa0826380 AT2G37760.1 38.408 289 133 7 19 279 15 286 1.22e-55 182
Msa0826380 AT3G53880.1 37.809 283 153 5 19 282 15 293 1.94e-55 182
Msa0826380 AT3G53880.2 37.545 277 150 5 19 276 15 287 6.33e-53 176
Msa0826380 AT5G01670.2 33.871 310 153 8 19 282 23 326 5.58e-52 174
Msa0826380 AT2G21260.1 34.483 290 161 6 15 277 6 293 8.43e-52 172
Msa0826380 AT2G21250.1 34.098 305 172 7 15 292 6 308 7.18e-51 170
Msa0826380 AT2G37760.6 41.709 199 95 4 91 279 53 240 2.72e-44 152
Msa0826380 AT2G37760.7 41.709 199 95 4 91 279 53 240 2.72e-44 152
Msa0826380 AT2G37770.1 39.594 197 91 5 19 194 15 204 5.02e-37 133
Msa0826380 AT2G21260.2 34.343 198 119 4 91 277 28 225 2.44e-35 127
Msa0826380 AT2G21250.2 36.538 208 107 6 15 199 6 211 8.99e-34 124
Msa0826380 AT1G06690.1 25.685 292 131 10 35 264 85 352 1.57e-15 76.6

Find 63 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACACAAATTT+TGG 0.147232 5_3:-66719885 None:intergenic
TTGCATTGCAAAACTCTCTA+AGG 0.274401 5_3:-66719669 None:intergenic
TGGACTTGTACTTGATTCAT+TGG 0.300645 5_3:+66719320 Msa0826380:CDS
ATTGGAAATGTAAACTTTCC+AGG 0.312952 5_3:-66719358 None:intergenic
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_3:-66718878 None:intergenic
CTTTGTCACTTCCAAACTTT+GGG 0.341927 5_3:+66718992 Msa0826380:CDS
AGGCCTGGCTTGGTTGGTCC+AGG 0.344379 5_3:-66719967 None:intergenic
AAAATTTGTGTATCTTTGAT+TGG 0.361005 5_3:+66719887 Msa0826380:CDS
CATTTGATGTGAAAGGTGTT+TGG 0.375654 5_3:+66719401 Msa0826380:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_3:+66719448 Msa0826380:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 5_3:-66719400 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 5_3:-66719376 None:intergenic
TCTTTGTCACTTCCAAACTT+TGG 0.379540 5_3:+66718991 Msa0826380:CDS
TCATTCTCCATAACCTCATT+TGG 0.392662 5_3:-66719745 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_3:+66719806 Msa0826380:CDS
TCTTTCCTTATCATAACTCT+TGG 0.404407 5_3:-66719857 None:intergenic
CAGAGGACCAAATGAGGTTA+TGG 0.408273 5_3:+66719738 Msa0826380:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 5_3:+66719402 Msa0826380:CDS
TTGAAAGAGGCAATTGAACT+TGG 0.422526 5_3:+66718949 Msa0826380:CDS
TGTTCCCAAGAGTTATGATA+AGG 0.428240 5_3:+66719852 Msa0826380:CDS
TTTGATACTGCTGCTGCCTA+TGG 0.438326 5_3:+66718901 Msa0826380:CDS
TCATTGAGGCCTGGCTTGGT+TGG 0.438358 5_3:-66719973 None:intergenic
CTTTCCTTATCATAACTCTT+GGG 0.442857 5_3:-66719856 None:intergenic
AAGCAAAATCGTTTGATCCC+TGG 0.455139 5_3:+66719949 Msa0826380:CDS
GACTCTTCAACTAGACTACT+TGG 0.469433 5_3:+66719300 Msa0826380:CDS
GAGGTCATTGAGGCCTGGCT+TGG 0.476217 5_3:-66719977 None:intergenic
ATCCCTGGACCAACCAAGCC+AGG 0.483424 5_3:+66719964 Msa0826380:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_3:-66719428 None:intergenic
GGCCTGGCTTGGTTGGTCCA+GGG 0.485174 5_3:-66719966 None:intergenic
TGAATTACTTGATTGACTGC+TGG 0.489360 5_3:-66719529 None:intergenic
TATGGTTCAGAACAAGCTCT+TGG 0.489964 5_3:+66718919 Msa0826380:CDS
TGTTGGTAAGAACCTTGGTT+GGG 0.497536 5_3:-66718765 None:intergenic
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_3:+66719430 Msa0826380:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 5_3:+66718936 Msa0826380:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.515291 5_3:-66718832 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 5_3:+66719394 Msa0826380:CDS
AAGAGCTTGTTCTGAACCAT+AGG 0.526693 5_3:-66718917 None:intergenic
CTTCAATTGACTAGAAGTGT+TGG 0.534788 5_3:-66718782 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.535658 5_3:+66718801 Msa0826380:CDS
TCATAGAGGTCATTGAGGCC+TGG 0.545875 5_3:-66719982 None:intergenic
AGAAGTGTTGGTAAGAACCT+TGG 0.552345 5_3:-66718770 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.555328 5_3:+66718802 Msa0826380:CDS
TTGACATTTAGTCATCATAG+AGG 0.571928 5_3:-66719996 None:intergenic
GTGTTGGTAAGAACCTTGGT+TGG 0.585257 5_3:-66718766 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_3:+66718868 Msa0826380:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5_3:+66719411 Msa0826380:CDS
GCTGATCCCATTCCAACCAC+AGG 0.587926 5_3:-66718808 None:intergenic
CTAAGATGGCTATATGAACA+AGG 0.588672 5_3:+66719820 Msa0826380:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.589452 5_3:-66719718 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.591438 5_3:+66719635 Msa0826380:intron
TGCAAGCAGAGGACCAAATG+AGG 0.592065 5_3:+66719732 Msa0826380:CDS
AGTCATCATAGAGGTCATTG+AGG 0.605914 5_3:-66719987 None:intergenic
GTTTACATTTCCAATTGATG+TGG 0.608506 5_3:+66719366 Msa0826380:CDS
CAATTGAAGATGCCTGTGGT+TGG 0.621459 5_3:+66718796 Msa0826380:CDS
TGGCCACTTAGTTCTCAACC+TGG 0.621982 5_3:+66719340 Msa0826380:CDS
TTTCCAGGTTGAGAACTAAG+TGG 0.629025 5_3:-66719343 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5_3:+66719775 Msa0826380:CDS
TAGTCAATTGAAGATGCCTG+TGG 0.637967 5_3:+66718792 Msa0826380:CDS
TTGAGGAAAGGTGCAAGCAG+AGG 0.639249 5_3:+66719721 Msa0826380:CDS
TTCAGAACAAGCTCTTGGAG+AGG 0.639658 5_3:+66718924 Msa0826380:CDS
TAGTGTTGAAATCCCAACCA+AGG 0.690652 5_3:+66718753 Msa0826380:CDS
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5_3:+66719414 Msa0826380:CDS
ATTGACTGCTGGAAGAACAG+TGG 0.720759 5_3:-66719518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAGTTAATCAAAACTT+AGG - chr5_3:66719564-66719583 None:intergenic 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr5_3:66719888-66719907 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr5_3:66719887-66719906 Msa0826380:CDS 20.0%
!! CAAAAAGTTAATCAAAACTT+AGG - chr5_3:66719564-66719583 None:intergenic 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr5_3:66719888-66719907 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr5_3:66719887-66719906 Msa0826380:CDS 20.0%
! TACACTTATTGAGATTAAAC+TGG + chr5_3:66719258-66719277 Msa0826380:intron 25.0%
! CAATGAACTCATATATTTAC+AGG + chr5_3:66719615-66719634 Msa0826380:intron 25.0%
! TACACTTATTGAGATTAAAC+TGG + chr5_3:66719258-66719277 Msa0826380:intron 25.0%
! CAATGAACTCATATATTTAC+AGG + chr5_3:66719615-66719634 Msa0826380:intron 25.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr5_3:66719006-66719025 None:intergenic 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr5_3:66719361-66719380 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr5_3:66719366-66719385 Msa0826380:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_3:66719402-66719421 Msa0826380:CDS 30.0%
TGAACTCATATATTTACAGG+TGG + chr5_3:66719618-66719637 Msa0826380:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_3:66719806-66719825 Msa0826380:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr5_3:66719859-66719878 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr5_3:66719860-66719879 None:intergenic 30.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr5_3:66719006-66719025 None:intergenic 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr5_3:66719361-66719380 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr5_3:66719366-66719385 Msa0826380:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_3:66719402-66719421 Msa0826380:CDS 30.0%
TGAACTCATATATTTACAGG+TGG + chr5_3:66719618-66719637 Msa0826380:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_3:66719806-66719825 Msa0826380:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr5_3:66719859-66719878 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr5_3:66719860-66719879 None:intergenic 30.0%
! CTTCAATTGACTAGAAGTGT+TGG - chr5_3:66718785-66718804 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_3:66718835-66718854 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_3:66718868-66718887 Msa0826380:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_3:66718881-66718900 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_3:66718949-66718968 Msa0826380:CDS 35.0%
! TCTTTGTCACTTCCAAACTT+TGG + chr5_3:66718991-66719010 Msa0826380:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG + chr5_3:66718992-66719011 Msa0826380:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG - chr5_3:66719047-66719066 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr5_3:66719320-66719339 Msa0826380:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_3:66719394-66719413 Msa0826380:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_3:66719403-66719422 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_3:66719401-66719420 Msa0826380:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG - chr5_3:66719532-66719551 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG - chr5_3:66719672-66719691 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG + chr5_3:66719673-66719692 Msa0826380:CDS 35.0%
TCATTCTCCATAACCTCATT+TGG - chr5_3:66719748-66719767 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_3:66719820-66719839 Msa0826380:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr5_3:66719852-66719871 Msa0826380:CDS 35.0%
! CTTCAATTGACTAGAAGTGT+TGG - chr5_3:66718785-66718804 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_3:66718835-66718854 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_3:66718868-66718887 Msa0826380:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_3:66718881-66718900 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_3:66718949-66718968 Msa0826380:CDS 35.0%
! TCTTTGTCACTTCCAAACTT+TGG + chr5_3:66718991-66719010 Msa0826380:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG + chr5_3:66718992-66719011 Msa0826380:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG - chr5_3:66719047-66719066 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr5_3:66719320-66719339 Msa0826380:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_3:66719394-66719413 Msa0826380:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_3:66719403-66719422 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_3:66719401-66719420 Msa0826380:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG - chr5_3:66719532-66719551 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG - chr5_3:66719672-66719691 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG + chr5_3:66719673-66719692 Msa0826380:CDS 35.0%
TCATTCTCCATAACCTCATT+TGG - chr5_3:66719748-66719767 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_3:66719820-66719839 Msa0826380:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr5_3:66719852-66719871 Msa0826380:CDS 35.0%
! TAGTGTTGAAATCCCAACCA+AGG + chr5_3:66718753-66718772 Msa0826380:CDS 40.0%
! TGTTGGTAAGAACCTTGGTT+GGG - chr5_3:66718768-66718787 None:intergenic 40.0%
!! AGAAGTGTTGGTAAGAACCT+TGG - chr5_3:66718773-66718792 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr5_3:66718792-66718811 Msa0826380:CDS 40.0%
! AAGAGCTTGTTCTGAACCAT+AGG - chr5_3:66718920-66718939 None:intergenic 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr5_3:66718919-66718938 Msa0826380:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_3:66719032-66719051 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr5_3:66719278-66719297 Msa0826380:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_3:66719300-66719319 Msa0826380:CDS 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG - chr5_3:66719346-66719365 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_3:66719379-66719398 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_3:66719431-66719450 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_3:66719430-66719449 Msa0826380:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_3:66719448-66719467 Msa0826380:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_3:66719775-66719794 Msa0826380:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_3:66719949-66719968 Msa0826380:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG - chr5_3:66719990-66720009 None:intergenic 40.0%
! TAGTGTTGAAATCCCAACCA+AGG + chr5_3:66718753-66718772 Msa0826380:CDS 40.0%
! TGTTGGTAAGAACCTTGGTT+GGG - chr5_3:66718768-66718787 None:intergenic 40.0%
!! AGAAGTGTTGGTAAGAACCT+TGG - chr5_3:66718773-66718792 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr5_3:66718792-66718811 Msa0826380:CDS 40.0%
! AAGAGCTTGTTCTGAACCAT+AGG - chr5_3:66718920-66718939 None:intergenic 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr5_3:66718919-66718938 Msa0826380:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_3:66719032-66719051 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr5_3:66719278-66719297 Msa0826380:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_3:66719300-66719319 Msa0826380:CDS 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG - chr5_3:66719346-66719365 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_3:66719379-66719398 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_3:66719431-66719450 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_3:66719430-66719449 Msa0826380:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_3:66719448-66719467 Msa0826380:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_3:66719775-66719794 Msa0826380:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_3:66719949-66719968 Msa0826380:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG - chr5_3:66719990-66720009 None:intergenic 40.0%
! GTGTTGGTAAGAACCTTGGT+TGG - chr5_3:66718769-66718788 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr5_3:66718796-66718815 Msa0826380:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_3:66718802-66718821 Msa0826380:CDS 45.0%
TTTGATACTGCTGCTGCCTA+TGG + chr5_3:66718901-66718920 Msa0826380:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG + chr5_3:66718924-66718943 Msa0826380:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_3:66718936-66718955 Msa0826380:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_3:66719411-66719430 Msa0826380:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG - chr5_3:66719521-66719540 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG - chr5_3:66719651-66719670 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG + chr5_3:66719738-66719757 Msa0826380:CDS 45.0%
! GTGTTGGTAAGAACCTTGGT+TGG - chr5_3:66718769-66718788 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr5_3:66718796-66718815 Msa0826380:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_3:66718802-66718821 Msa0826380:CDS 45.0%
TTTGATACTGCTGCTGCCTA+TGG + chr5_3:66718901-66718920 Msa0826380:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG + chr5_3:66718924-66718943 Msa0826380:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_3:66718936-66718955 Msa0826380:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_3:66719411-66719430 Msa0826380:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG - chr5_3:66719521-66719540 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG - chr5_3:66719651-66719670 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG + chr5_3:66719738-66719757 Msa0826380:CDS 45.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_3:66718801-66718820 Msa0826380:CDS 50.0%
! TGGCCACTTAGTTCTCAACC+TGG + chr5_3:66719340-66719359 Msa0826380:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_3:66719414-66719433 Msa0826380:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_3:66719635-66719654 Msa0826380:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG + chr5_3:66719704-66719723 Msa0826380:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_3:66719721-66719740 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG + chr5_3:66719721-66719740 Msa0826380:CDS 50.0%
TGCAAGCAGAGGACCAAATG+AGG + chr5_3:66719732-66719751 Msa0826380:CDS 50.0%
TCATAGAGGTCATTGAGGCC+TGG - chr5_3:66719985-66720004 None:intergenic 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_3:66718801-66718820 Msa0826380:CDS 50.0%
! TGGCCACTTAGTTCTCAACC+TGG + chr5_3:66719340-66719359 Msa0826380:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_3:66719414-66719433 Msa0826380:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_3:66719635-66719654 Msa0826380:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG + chr5_3:66719704-66719723 Msa0826380:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_3:66719721-66719740 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG + chr5_3:66719721-66719740 Msa0826380:CDS 50.0%
TGCAAGCAGAGGACCAAATG+AGG + chr5_3:66719732-66719751 Msa0826380:CDS 50.0%
TCATAGAGGTCATTGAGGCC+TGG - chr5_3:66719985-66720004 None:intergenic 50.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_3:66718811-66718830 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG + chr5_3:66719709-66719728 Msa0826380:CDS 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG - chr5_3:66719976-66719995 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_3:66718811-66718830 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG + chr5_3:66719709-66719728 Msa0826380:CDS 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG - chr5_3:66719976-66719995 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+AGG + chr5_3:66719964-66719983 Msa0826380:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG - chr5_3:66719980-66719999 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+AGG + chr5_3:66719964-66719983 Msa0826380:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG - chr5_3:66719980-66719999 None:intergenic 60.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG - chr5_3:66719969-66719988 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG - chr5_3:66719970-66719989 None:intergenic 65.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG - chr5_3:66719969-66719988 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG - chr5_3:66719970-66719989 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 66718748 66720011 66718748 ID=Msa0826380;Name=Msa0826380
chr5_3 mRNA 66718748 66720011 66718748 ID=Msa0826380-mRNA-1;Parent=Msa0826380;Name=Msa0826380-mRNA-1;_AED=0.31;_eAED=0.32;_QI=0|0|0|1|1|1|3|0|294
chr5_3 exon 66718748 66719013 66718748 ID=Msa0826380-mRNA-1:exon:20966;Parent=Msa0826380-mRNA-1
chr5_3 exon 66719300 66719543 66719300 ID=Msa0826380-mRNA-1:exon:20967;Parent=Msa0826380-mRNA-1
chr5_3 exon 66719637 66720011 66719637 ID=Msa0826380-mRNA-1:exon:20968;Parent=Msa0826380-mRNA-1
chr5_3 CDS 66718748 66719013 66718748 ID=Msa0826380-mRNA-1:cds;Parent=Msa0826380-mRNA-1
chr5_3 CDS 66719300 66719543 66719300 ID=Msa0826380-mRNA-1:cds;Parent=Msa0826380-mRNA-1
chr5_3 CDS 66719637 66720011 66719637 ID=Msa0826380-mRNA-1:cds;Parent=Msa0826380-mRNA-1
Gene Sequence

>Msa0826380

ATGGGTAGTGTTGAAATCCCAACCAAGGTTCTTACCAACACTTCTAGTCAATTGAAGATGCCTGTGGTTGGAATGGGATCAGCACCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCCTATGGTTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAAAGAACTCTTTGTCACTTCCAAACTTTGGGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAACCTGGAAAGTTTACATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCAGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAACCTTAGAGAGTTTTGCAATGCAAATGGAATAGTGTTAACTGCGTTTTCGCCGTTGAGGAAAGGTGCAAGCAGAGGACCAAATGAGGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGTTATGATAAGGAAAGAATGAACCAAAATTTGTGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATCGATCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCAGGCCTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0826380

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTRKNSLSLPNFGTLQLDYLDLYLIHWPLSSQPGKFTFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKNLREFCNANGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLCIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*