AlfalfaGEDB | Msa0942640

M. sativa cultivar zhongmu-4 / Msa0942640

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0942640	sp\|Q8LFN2\|Y3037_ARATH	40.165	727	407	12	48	760	43	755	1.12e-162	493

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0942640	A0A396HI69	95.455	770	35	0	1	770	1	770	0.0	1467

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0942640	0.804132	2.501309e-49	-8.615850e-47
Msa0136650	Msa0942640	0.809385	1.942412e-50	-8.615850e-47
Msa0174450	Msa0942640	0.814675	1.365478e-51	-8.615850e-47
Msa0380620	Msa0942640	0.804063	2.585078e-49	-8.615850e-47
Msa0430260	Msa0942640	0.806219	9.149776e-50	-8.615850e-47
Msa0876310	Msa0942640	0.842102	3.174146e-58	-8.615850e-47
Msa0942640	Msa1021590	0.808247	3.400846e-50	-8.615850e-47
Msa0942640	Msa1042190	0.802876	4.556033e-49	-8.615850e-47
Msa0942640	Msa1044680	0.825493	4.548952e-54	-8.615850e-47
Msa0942640	Msa1045140	0.800109	1.681193e-48	-8.615850e-47

Showing 1 to 10 of 14 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0942640	MtrunA17_Chr6g0459201	95.455	770	35	0	1	770	1	770	0.0	1467
Msa0942640	MtrunA17_Chr7g0226051	69.713	766	223	6	8	766	1	764	0.0	1059
Msa0942640	MtrunA17_Chr3g0116231	50.590	763	362	8	8	763	1	755	0.0	712
Msa0942640	MtrunA17_Chr7g0253951	38.381	766	436	11	21	769	11	757	2.20e-167	502
Msa0942640	MtrunA17_Chr6g0460961	36.097	784	447	10	16	769	9	768	4.07e-161	486
Msa0942640	MtrunA17_Chr8g0362301	33.595	765	421	12	16	760	11	708	3.04e-122	383
Msa0942640	MtrunA17_Chr8g0355271	32.888	824	460	18	14	760	10	817	4.00e-112	360
Msa0942640	MtrunA17_Chr1g0203631	31.125	649	379	14	137	749	645	1261	2.26e-68	245
Msa0942640	MtrunA17_Chr1g0203631	32.374	278	148	4	118	355	470	747	2.09e-23	106
Msa0942640	MtrunA17_Chr1g0203631	33.937	221	141	3	137	353	370	589	1.99e-21	100

Showing 1 to 10 of 1,167 entries

Previous1 2 3 4 5…117Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0942640	AT5G14210.1	55.875	766	326	5	15	770	9	772	0.0	832
Msa0942640	AT5G14210.2	53.827	797	325	7	15	770	9	803	0.0	815
Msa0942640	AT5G14210.3	54.179	694	306	5	15	698	9	700	0.0	722
Msa0942640	AT3G03770.2	40.165	727	407	12	48	760	43	755	1.14e-163	493
Msa0942640	AT3G03770.3	40.165	727	407	12	48	760	43	755	1.14e-163	493
Msa0942640	AT3G03770.1	40.165	727	407	12	48	760	43	755	1.14e-163	493
Msa0942640	AT5G63410.1	44.316	607	291	13	191	767	90	679	7.26e-147	446
Msa0942640	AT5G63410.1	45.455	275	146	3	8	278	1	275	7.61e-60	215
Msa0942640	AT1G14390.1	32.812	768	396	21	30	760	28	712	1.54e-94	311
Msa0942640	AT2G02780.1	30.220	771	423	20	30	760	28	723	8.27e-79	269

Showing 1 to 10 of 823 entries

Previous1 2 3 4 5…83Next

Find 129 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGTGACCACGAATTT+CGG	0.296768	6_3:-17829053	None:intergenic
AAACCAAAGTAAGAACCTTT+AGG	0.270637	6_3:-17828641	None:intergenic
AAAGAGAACAATGTTGAAGG+CGG	0.700524	6_3:-17829176	None:intergenic
AAAGCTTCAACATCCAAATT+TGG	0.192358	6_3:+17830375	Msa0942640:CDS
AACAAAGAATCAAACCAATT+AGG	0.442771	6_3:-17828831	None:intergenic
AACCAAAGTAAGAACCTTTA+GGG	0.283424	6_3:-17828640	None:intergenic
AACCCTAAAGGTTCTTACTT+TGG	0.399019	6_3:+17828638	Msa0942640:CDS
AAGTACATTGTTTCAACTTT+TGG	0.267603	6_3:+17827955	Msa0942640:five_prime_UTR
AATGGTAGAGTTGTTCGATA+TGG	0.385048	6_3:+17829347	Msa0942640:CDS
ACCACGAATTTCGGCAAAAG+CGG	0.573256	6_3:-17829044	None:intergenic

Showing 1 to 10 of 129 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGATGCATAATGTTCCAATT+TGG	+	chr6_3:17828261-17828280	Msa0942640:exon	30.0%
CCCTTCTTCATTACAAATTA+TGG	+	chr6_3:17828413-17828432	Msa0942640:CDS	30.0%
GCAAATCCATTGAAAATTGA+TGG	-	chr6_3:17828549-17828568	None:intergenic	30.0%
TTCATGGATAGTGTTTGATT+TGG	-	chr6_3:17828576-17828595	None:intergenic	30.0%
AACCAAAGTAAGAACCTTTA+GGG	-	chr6_3:17828643-17828662	None:intergenic	30.0%
AAACCAAAGTAAGAACCTTT+AGG	-	chr6_3:17828644-17828663	None:intergenic	30.0%
TTGGTTTCATTAGGAATTTG+GGG	+	chr6_3:17828657-17828676	Msa0942640:CDS	30.0%
GTGAGAGATTGAATCTTATT+AGG	-	chr6_3:17828690-17828709	None:intergenic	30.0%
TTGAGCTCAAATTTCCTATT+TGG	+	chr6_3:17828729-17828748	Msa0942640:CDS	30.0%
TCCACCAAAAATTTCAACTA+TGG	+	chr6_3:17828758-17828777	Msa0942640:CDS	30.0%

Showing 1 to 10 of 231 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	17827954	17832665	17827954	ID=Msa0942640;Name=Msa0942640
chr6_3	mRNA	17827954	17832665	17827954	ID=Msa0942640-mRNA-1;Parent=Msa0942640;Name=Msa0942640-mRNA-1;_AED=0.13;_eAED=0.13;_QI=316\|1\|1\|1\|1\|1\|7\|300\|770
chr6_3	exon	17827954	17829635	17827954	ID=Msa0942640-mRNA-1:exon:5331;Parent=Msa0942640-mRNA-1
chr6_3	exon	17829962	17830095	17829962	ID=Msa0942640-mRNA-1:exon:5332;Parent=Msa0942640-mRNA-1
chr6_3	exon	17830268	17830511	17830268	ID=Msa0942640-mRNA-1:exon:5333;Parent=Msa0942640-mRNA-1
chr6_3	exon	17830901	17831112	17830901	ID=Msa0942640-mRNA-1:exon:5334;Parent=Msa0942640-mRNA-1
chr6_3	exon	17831206	17831234	17831206	ID=Msa0942640-mRNA-1:exon:5335;Parent=Msa0942640-mRNA-1
chr6_3	exon	17831759	17831870	17831759	ID=Msa0942640-mRNA-1:exon:5336;Parent=Msa0942640-mRNA-1
chr6_3	exon	17832150	17832665	17832150	ID=Msa0942640-mRNA-1:exon:5337;Parent=Msa0942640-mRNA-1
chr6_3	five_prime_UTR	17827954	17828269	17827954	ID=Msa0942640-mRNA-1:five_prime_utr;Parent=Msa0942640-mRNA-1
chr6_3	CDS	17828270	17829635	17828270	ID=Msa0942640-mRNA-1:cds;Parent=Msa0942640-mRNA-1
chr6_3	CDS	17829962	17830095	17829962	ID=Msa0942640-mRNA-1:cds;Parent=Msa0942640-mRNA-1
chr6_3	CDS	17830268	17830511	17830268	ID=Msa0942640-mRNA-1:cds;Parent=Msa0942640-mRNA-1
chr6_3	CDS	17830901	17831112	17830901	ID=Msa0942640-mRNA-1:cds;Parent=Msa0942640-mRNA-1
chr6_3	CDS	17831206	17831234	17831206	ID=Msa0942640-mRNA-1:cds;Parent=Msa0942640-mRNA-1
chr6_3	CDS	17831759	17831870	17831759	ID=Msa0942640-mRNA-1:cds;Parent=Msa0942640-mRNA-1
chr6_3	CDS	17832150	17832365	17832150	ID=Msa0942640-mRNA-1:cds;Parent=Msa0942640-mRNA-1
chr6_3	three_prime_UTR	17832366	17832665	17832366	ID=Msa0942640-mRNA-1:three_prime_utr;Parent=Msa0942640-mRNA-1

Gene Sequence

>Msa0942640

ATGTTCCAATTTGGCAAGTCAATGAGGTACTTTCACTTTCATCTTTTGTTTCTTTCATGGTTTTTGTTGTTCATTTCAAATAGTCATGAGTTAGAACAAGATCAAAGTCAAACCTTGTTACAATTAAGAGCTTATTTAGAATTCCCTTCTTCATTACAAATTATGGAAAACTACATTAATGATCTTTGTTACCTTCCTCCATCTTCAAATTTGAGCATTAAATGTGAAGATAATTCAATAACTGAGCTCAAAATTTTTGGTGAAAAATCTTTGAAACCATCAATTTTCAATGGATTTGCAATTCCAAATCAAACACTATCCATGAATTTCTCAATTGATTCATTTTTCACCACATTGACAAAGTTGAAAACCCTAAAGGTTCTTACTTTGGTTTCATTAGGAATTTGGGGGAAACTTCCTAATAAGATTCAATCTCTCACTTTGCTTCAAGTTTTGGATTTGAGCTCAAATTTCCTATTTGGTAGCATTCCACCAAAAATTTCAACTATGGTCAAGCTTCAATCACTAACACTTGATGAAAATTATTTCAACACCACTATGCCTAATTGGTTTGATTCTTTGTTTAACTTAAGTATCTTGAGTCTGAAGAAAAATCACTTAAAGGGTTCATTTCCAATTTCACTATGCAAAATCAAGACACTTAAAGTTATTTCCTTGTCACAAAATGAACTATCTGGTAGATTACCTAGTCTCACTACTCTCAATGGTTTACATGTTTTGGATTTGAGAGAAAATCGTTTCGAATATGAACTACCGCTTTTGCCGAAATTCGTGGTCACGGTTTTGTTTAGCAATAACTCGTTCTCCGGAGAGATACCGAAGAAGTTCGGCGAATTGAATCATCTTCAACATTTAGACCTTTCGTCGAATCATCTGAAGGGCACACCGCCTTCAACATTGTTCTCTTTGTCAAATTTAAGTTATCTGAATCTAGCAAACAATGTGCTAAGTGGAGAATTTTCTGATAAACTTCATTGTGGTGGAAAACTCGGTTATGTTGATATTTCTAGCAACAAGTTAAGTGGTTTACTTCCTTCTTGTTTGGTGAATAGTTCTAATGGTAGAGTTGTTCGATATGGTAGAAATTGTTTATCTGTTGATTCTCAGAATCAGCAGAGAGGTTCTTATTGTAAGGAATCCGGTTTTGGATGGATGAGATTCAAGGAATGGAAAGTGGTTGCAATCGTTGCTATCGTTGTTGGATTTCTTCTTGCGGTTTTGGTGTTTGGAGTTTTGTTATGTAAAAAATGTCATTTGATGAAGAAAACTAGAAAGGATGTGTTGCCAAAGATTGTTCAAGATAAATCCACAATCGGTGTTTCATCAGAAGTTCTTGCAAATGCTAGATTTATTTCTCAAGCAGTGAAGTTAGGGACACAAACTACTCTAACCTGTCGACAATTTTCTATTCAAGATTTGAAGGAAGCCACCAAAAACTTTAATTTGTCAACATGTATCGGTGATGGCTCCATAGGAAAGCTGTATAAAGGTAAACTAGAGAATGGAACTTATGTGGTGATAAGATCATTGGTTCTGTCAAAGAAATGCTCGATTCAAAGTCTTAAAGCTAAGTTGGATTACCTCTCAAAGCTTCAACATCCAAATTTGGTTAGTCTTTTGGGTTATTGTATTGATGGTGGTGAACAAGATGATTCAAGCAACCCAAAACTTCATCTTATGTATGAATATGTGCCAAATGGTGATTATCATACTCATCTATCAGAATATTCTGCAGTGAAAGCACTTAAGTGGCCTGATAGACTAGCAATTTTGATTGGAGTTGCAAAGGCAGTGCATTTCTTACATACTGGTGTTATACCAGGATGTTTTAGCAACCAACTAAAGACAAAGAATATCTTACTTGATGAACACTGCATTCCAAAACTAAGTGACCATGGTATGTCCATCATCAAAGAGGATATTGAAAAGTTTGAGACAAAGGGCGAGAAGAAATCAAAATCATGTCCAAAGACAAAGATGGATAATGATGTTTACAATTTCGGATTCATATTGTTGGAATCACTTGTTGGACCCATTACACGTGACAAAGGTGAAACATTTTTCATTAATGAAAAGGCATCATTTGGAAGTCAAGATGGAAGAAGAAAGATTGTAGATCCAATAGTGTTAACAACTTGCTCACAAGAATCATTATCAATTGCAATATCTATAACAACCAAATGTATATCTCAAGACTCTTCATCTCGTCCTTCTTTTGAAGATGTTCTATGGAACTTACAATATGCAGCTCAAGTTCAAGCTACATCAGATGCAGATCAAAAATCAGATTAA

Protein sequence

>Msa0942640

MFQFGKSMRYFHFHLLFLSWFLLFISNSHELEQDQSQTLLQLRAYLEFPSSLQIMENYINDLCYLPPSSNLSIKCEDNSITELKIFGEKSLKPSIFNGFAIPNQTLSMNFSIDSFFTTLTKLKTLKVLTLVSLGIWGKLPNKIQSLTLLQVLDLSSNFLFGSIPPKISTMVKLQSLTLDENYFNTTMPNWFDSLFNLSILSLKKNHLKGSFPISLCKIKTLKVISLSQNELSGRLPSLTTLNGLHVLDLRENRFEYELPLLPKFVVTVLFSNNSFSGEIPKKFGELNHLQHLDLSSNHLKGTPPSTLFSLSNLSYLNLANNVLSGEFSDKLHCGGKLGYVDISSNKLSGLLPSCLVNSSNGRVVRYGRNCLSVDSQNQQRGSYCKESGFGWMRFKEWKVVAIVAIVVGFLLAVLVFGVLLCKKCHLMKKTRKDVLPKIVQDKSTIGVSSEVLANARFISQAVKLGTQTTLTCRQFSIQDLKEATKNFNLSTCIGDGSIGKLYKGKLENGTYVVIRSLVLSKKCSIQSLKAKLDYLSKLQHPNLVSLLGYCIDGGEQDDSSNPKLHLMYEYVPNGDYHTHLSEYSAVKALKWPDRLAILIGVAKAVHFLHTGVIPGCFSNQLKTKNILLDEHCIPKLSDHGMSIIKEDIEKFETKGEKKSKSCPKTKMDNDVYNFGFILLESLVGPITRDKGETFFINEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCISQDSSSRPSFEDVLWNLQYAAQVQATSDADQKSD*