AlfalfaGEDB | Msa1196450

M. sativa cultivar zhongmu-4 / Msa1196450

KEGG: K09338
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043565 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196450	XP_013445749.1	100.000	282	0	0	1	282	1	282	0.0	586

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196450	sp\|Q8LC03\|ATB13_ARATH	64.189	296	84	8	1	282	7	294	8.44e-119	345

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196450	A0A072U1W4	100.000	282	0	0	1	282	1	282	0.0	586

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TFs/TRs:

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Gene ID	Type	Classification
Msa1196450	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005890	Msa1196450	0.814209	1.731323e-51	-8.615850e-47
Msa0007480	Msa1196450	0.800910	1.154555e-48	-8.615850e-47
Msa0018160	Msa1196450	0.805177	1.514020e-49	-8.615850e-47
Msa0036870	Msa1196450	0.823006	1.746867e-53	-8.615850e-47
Msa0043230	Msa1196450	0.817651	2.952908e-52	-8.615850e-47
Msa0074350	Msa1196450	0.845516	3.869125e-59	-8.615850e-47
Msa0074510	Msa1196450	0.835740	1.407000e-56	-8.615850e-47
Msa0075220	Msa1196450	0.801707	7.929393e-49	-8.615850e-47
Msa0087940	Msa1196450	0.803306	3.711750e-49	-8.615850e-47
Msa0090400	Msa1196450	0.834124	3.592486e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196450	MtrunA17_Chr8g0362151	100.000	282	0	0	1	282	1	282	0.0	586
Msa1196450	MtrunA17_Chr5g0416391	81.818	286	42	6	1	282	4	283	1.33e-150	422
Msa1196450	MtrunA17_Chr6g0453021	50.498	301	98	10	1	279	1	272	1.69e-84	254
Msa1196450	MtrunA17_Chr7g0217111	52.465	284	113	9	1	275	1	271	3.95e-82	248
Msa1196450	MtrunA17_Chr3g0123691	51.656	151	60	4	33	180	26	166	3.66e-39	139
Msa1196450	MtrunA17_Chr6g0450991	64.948	97	34	0	76	172	66	162	6.53e-39	137
Msa1196450	MtrunA17_Chr3g0119291	49.689	161	62	3	64	213	46	198	1.03e-37	134
Msa1196450	MtrunA17_Chr5g0415941	66.667	96	32	0	77	172	87	182	4.74e-37	134
Msa1196450	MtrunA17_Chr4g0060031	58.475	118	46	2	52	169	73	187	9.47e-37	133
Msa1196450	MtrunA17_Chr8g0381741	62.245	98	37	0	75	172	52	149	2.19e-36	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196450	AT1G69780.1	64.189	296	84	8	1	282	7	294	8.58e-120	345
Msa1196450	AT1G26960.1	55.363	289	81	9	1	282	8	255	5.23e-95	281
Msa1196450	AT3G01220.1	48.057	283	114	9	1	275	16	273	1.07e-74	230
Msa1196450	AT5G15150.1	44.300	307	111	11	1	275	22	300	1.47e-71	223
Msa1196450	AT4G40060.1	57.576	132	52	2	59	186	39	170	4.71e-40	141
Msa1196450	AT5G65310.2	48.824	170	70	4	52	206	19	186	7.52e-40	140
Msa1196450	AT5G65310.1	48.824	170	70	4	52	206	37	204	8.71e-40	141
Msa1196450	AT3G01470.1	48.052	154	65	1	34	172	10	163	6.06e-39	137
Msa1196450	AT2G22430.1	66.667	99	33	0	74	172	59	157	8.64e-39	138
Msa1196450	AT1G27045.1	40.306	196	94	5	8	195	12	192	2.63e-31	116

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Find 64 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTACCATGGTAATCTTG+AGG	0.656226	8_1:-45653672	None:intergenic
AAATATTTGATAGTACTAGT+TGG	0.492736	8_1:+45655663	Msa1196450:three_prime_UTR
AACCAAGACAGATTGCTATA+TGG	0.383913	8_1:+45654103	Msa1196450:CDS
AACCATATAGCAATCTGTCT+TGG	0.526039	8_1:-45654105	None:intergenic
AACCTTAATAAAGAAACAGA+AGG	0.601474	8_1:+45654918	Msa1196450:CDS
AAGACAATATGATACTATTA+AGG	0.363112	8_1:+45654188	Msa1196450:CDS
AAGTGCTGTTGCTCCAACCA+TGG	0.633621	8_1:-45655203	None:intergenic
AATCTCTTCCTTTATTTCTG+TGG	0.403872	8_1:-45655715	None:intergenic
AATTGGAAGAAAACGTTGAG+AGG	0.589855	8_1:-45653323	None:intergenic
ACAAGAGAAGATTGATCTCT+TGG	0.413112	8_1:-45653496	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGATTTGAGTAAAGAACTAT+TGG	+	chr8_1:45653531-45653550	Msa1196450:five_prime_UTR	30.0%
CTATATGGTTTCAAAACAGA+AGG	+	chr8_1:45654118-45654137	Msa1196450:CDS	30.0%
GAAAGTAACTGTGTAATGAT+AGG	-	chr8_1:45654705-45654724	None:intergenic	30.0%
TCAAGCTTGATATTTCAACA+AGG	+	chr8_1:45654976-45654995	Msa1196450:CDS	30.0%
GTGTCAAAAAATTGATCACA+TGG	+	chr8_1:45655121-45655140	Msa1196450:CDS	30.0%
CATCAAAGTTTACCAAAACA+AGG	-	chr8_1:45655472-45655491	None:intergenic	30.0%
GTTTCGATAGTAATAGATCA+TGG	+	chr8_1:45655625-45655644	Msa1196450:three_prime_UTR	30.0%
AATTGGAAGAAAACGTTGAG+AGG	-	chr8_1:45653326-45653345	None:intergenic	35.0%
ACAAGAGAAGATTGATCTCT+TGG	-	chr8_1:45653499-45653518	None:intergenic	35.0%
GTTTGTAGCATGAAATTTGC+TGG	-	chr8_1:45653588-45653607	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	45653207	45655724	45653207	ID=Msa1196450;Name=Msa1196450
chr8_1	mRNA	45653207	45655724	45653207	ID=Msa1196450-mRNA-1;Parent=Msa1196450;Name=Msa1196450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=366\|1\|1\|1\|1\|1\|3\|492\|282
chr8_1	exon	45653207	45653687	45653207	ID=Msa1196450-mRNA-1:exon:14594;Parent=Msa1196450-mRNA-1
chr8_1	exon	45653878	45654257	45653878	ID=Msa1196450-mRNA-1:exon:14595;Parent=Msa1196450-mRNA-1
chr8_1	exon	45654879	45655724	45654879	ID=Msa1196450-mRNA-1:exon:14596;Parent=Msa1196450-mRNA-1
chr8_1	five_prime_UTR	45653207	45653572	45653207	ID=Msa1196450-mRNA-1:five_prime_utr;Parent=Msa1196450-mRNA-1
chr8_1	CDS	45653573	45653687	45653573	ID=Msa1196450-mRNA-1:cds;Parent=Msa1196450-mRNA-1
chr8_1	CDS	45653878	45654257	45653878	ID=Msa1196450-mRNA-1:cds;Parent=Msa1196450-mRNA-1
chr8_1	CDS	45654879	45655232	45654879	ID=Msa1196450-mRNA-1:cds;Parent=Msa1196450-mRNA-1
chr8_1	three_prime_UTR	45655233	45655724	45655233	ID=Msa1196450-mRNA-1:three_prime_utr;Parent=Msa1196450-mRNA-1

Gene Sequence

>Msa1196450

ATGGCGTTCTTTCCAGCAAATTTCATGCTACAAACTTCTCATCAAGATGAACATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCACCTCAAGATTACCATGGAGGAGGAGTATCCTTTTTAGGAAAAAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAGGAAGAATTATCCGATGATGGATCGCAGTTAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTAGCAAGGGCTCTTGGATTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAATCAAAAACTTCAGACTGAGATATTGGCACTGAAAAATAGAGAACCAACTGAATCAATCAACCTTAATAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGATATCAAGCTTGATATTTCAACAAGGACACAAGCTATTGATAGTCCTTTATCTACTCAACAGACAAGCATAAACCTATTTCCATCTTCTTCAAGACCAGCAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACATTCAGTGTCAAAAAATTGATCACATGGTTAAGGAAGAGAGCTTGAGTAACATGTTTTGTGCCATGGATGATCAATCTGGACTATGGCCATGGTTGGAGCAACAGCACTTCAATTAA

Protein sequence

>Msa1196450

MAFFPANFMLQTSHQDEHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDTIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDSPLSTQQTSINLFPSSSRPAGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCAMDDQSGLWPWLEQQHFN*