AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0450630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450630 MtrunA17_Chr3g0097741 36.735 147 81 4 2 136 954 1100 7.55e-20 85.1
Msa0450630 MtrunA17_Chr8g0393091 40.678 118 59 5 1 112 919 1031 1.91e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 197 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCACTTGTCTTCTTTA+TGG 0.082904 3_3:-36326991 Msa0450630:five_prime_UTR
AACAAATCTTTAACACATTT+TGG 0.126988 3_3:+36323463 None:intergenic
CAGAAATAGGGTTCGTATTT+AGG 0.132501 3_3:+36327207 None:intergenic
CTCTCAACTGATTTGCTATT+TGG 0.133204 3_3:-36326670 Msa0450630:five_prime_UTR
GGATCTGGATCATCACTTTC+TGG 0.146392 3_3:+36324736 None:intergenic
CATCTAGAGGTTGTCTTTAT+AGG 0.167773 3_3:-36326695 Msa0450630:five_prime_UTR
GTTCAATTTGTTTGTTTGTT+TGG 0.203339 3_3:+36323674 None:intergenic
TTCAATTTGTTTGTTTGTTT+GGG 0.210254 3_3:+36323675 None:intergenic
TGCTAGCTGTTGTGATTATT+TGG 0.220823 3_3:-36326407 Msa0450630:five_prime_UTR
CGTATTTAGGATTTGGGATT+TGG 0.221741 3_3:+36327220 None:intergenic
CGTTGATAGATTTACTTTAT+AGG 0.222820 3_3:-36326758 Msa0450630:five_prime_UTR
CTGAGCGAGTTCGTCAAATT+TGG 0.223068 3_3:+36326034 None:intergenic
TTGGGGTGATTGAAGAGATT+TGG 0.231812 3_3:-36325657 Msa0450630:CDS
GGGCCACCAGATTGAATTTC+AGG 0.240275 3_3:+36327052 None:intergenic
TATGAAACTTAGGATTTATT+AGG 0.242704 3_3:-36322422 Msa0450630:three_prime_UTR
TAGGGTTCGTATTTAGGATT+TGG 0.252297 3_3:+36327213 None:intergenic
TATGGAGACACTCAAGAATA+TGG 0.260100 3_3:-36323713 Msa0450630:three_prime_UTR
TTAACCCCACTTTCTAATTA+AGG 0.262240 3_3:-36327121 Msa0450630:five_prime_UTR
AAAAGTAAGTTTAAGGTATT+AGG 0.263596 3_3:+36326555 None:intergenic
CGTATACTAACCTAAAATTC+AGG 0.273645 3_3:+36324533 None:intergenic
TTACTTGGCACCATTTCTTA+TGG 0.274552 3_3:-36323148 Msa0450630:three_prime_UTR
CTCAATTTGGCATGATCTTA+AGG 0.281023 3_3:-36324875 Msa0450630:intron
AACTTAGTTTAGAATTTAAC+TGG 0.282404 3_3:-36326343 Msa0450630:five_prime_UTR
TGGGGTGATTGAAGAGATTT+GGG 0.283757 3_3:-36325656 Msa0450630:CDS
ATCCACTTGCATTTAAATAA+AGG 0.288029 3_3:+36325607 None:intergenic
GTTAAGAGTTGTGAATAGTT+TGG 0.289956 3_3:+36326516 None:intergenic
TAAGGACGAACCTTTCATTA+TGG 0.294869 3_3:-36325515 Msa0450630:CDS
AGTCTACAAAAGACTCAATT+TGG 0.302900 3_3:-36324888 Msa0450630:three_prime_UTR
TCTTTGCAAGGCAGCTTATA+AGG 0.303073 3_3:-36325533 Msa0450630:CDS
TCGCATCTACACCGTACTTT+GGG 0.303739 3_3:-36325675 Msa0450630:CDS
GACAACAAGTGTGAAATTAA+AGG 0.304032 3_3:-36325034 Msa0450630:three_prime_UTR
CTTTATAGGTTGTCCTTATA+CGG 0.306480 3_3:-36326744 Msa0450630:five_prime_UTR
ATTAAGAAATTTATGACTTC+CGG 0.313134 3_3:+36323490 None:intergenic
TTTCGTATGTAGGATTTAAC+TGG 0.313232 3_3:+36323198 None:intergenic
ACTGGGATCCATGCTATATA+AGG 0.315183 3_3:-36326325 Msa0450630:five_prime_UTR
TGAAAGAGAAGCAATATCTA+AGG 0.319092 3_3:-36323531 Msa0450630:three_prime_UTR
GGATTTGGAGAGTGAGATCT+AGG 0.326775 3_3:+36327235 None:intergenic
ACTATTCTACTCTACAAGTT+TGG 0.337574 3_3:-36323420 Msa0450630:three_prime_UTR
AGTCATACTAAAACCGTATA+AGG 0.339860 3_3:+36326731 None:intergenic
TTACATCTCTATAAATGTTC+AGG 0.342736 3_3:-36326433 Msa0450630:five_prime_UTR
TTAAGAGTTGTGAATAGTTT+GGG 0.348999 3_3:+36326517 None:intergenic
ACAAACAAATCAAATGTGTT+TGG 0.350566 3_3:-36323276 Msa0450630:three_prime_UTR
GTCTAACAGAATTGAGAATA+GGG 0.350592 3_3:+36326383 None:intergenic
ATTTGTTGGTTGGCGGGGCT+TGG 0.355857 3_3:-36323447 Msa0450630:three_prime_UTR
TCTCGTTATGATGAACGATT+TGG 0.360944 3_3:-36326942 Msa0450630:five_prime_UTR
CAATGTTTAATTAGTATTGT+TGG 0.361700 3_3:-36322386 Msa0450630:three_prime_UTR
TACGGTGTAGATGCGATTAC+AGG 0.362633 3_3:+36325682 None:intergenic
TTTCTGAACATTGTCAATAA+TGG 0.367597 3_3:+36323570 None:intergenic
TATGAGACTAAGAGCAAGTT+CGG 0.369578 3_3:+36326062 None:intergenic
AGGGTTCGTATTTAGGATTT+GGG 0.370284 3_3:+36327214 None:intergenic
TCTAGAAGTGTATGAAACTT+AGG 0.374257 3_3:-36322432 Msa0450630:three_prime_UTR
CGCCGTCACGTCATGACAAA+TGG 0.380342 3_3:-36324281 Msa0450630:three_prime_UTR
CTGGGATCCATGCTATATAA+GGG 0.381175 3_3:-36326324 Msa0450630:five_prime_UTR
AGTAAATCTATCAACGACTA+TGG 0.386739 3_3:+36326765 None:intergenic
AGTCTAACAGAATTGAGAAT+AGG 0.398175 3_3:+36326382 None:intergenic
AAGTGGATGACGGCGGTCTT+CGG 0.398231 3_3:+36324616 None:intergenic
TTGGTTGAAAGAACTGAAAA+AGG 0.402618 3_3:-36323997 Msa0450630:three_prime_UTR
TATCCACAATCAGTTGTGTT+AGG 0.406665 3_3:+36322692 None:intergenic
GGATCTTAACACAATTCATA+AGG 0.409531 3_3:+36326457 None:intergenic
ACAACCAATGTATTATCCTT+TGG 0.410346 3_3:+36323016 None:intergenic
GGAGATATGTTGGCACTTGA+AGG 0.415739 3_3:-36322343 Msa0450630:three_prime_UTR
TACTGGCCTGAAATTCAATC+TGG 0.416189 3_3:-36327058 Msa0450630:five_prime_UTR
GATATCTTAACAGAGGCTAT+TGG 0.419473 3_3:-36323949 Msa0450630:three_prime_UTR
AAAATGTGTTAAAGATTTGT+TGG 0.429148 3_3:-36323461 Msa0450630:three_prime_UTR
CTATAAAGACAACCTCTAGA+TGG 0.432169 3_3:+36326696 None:intergenic
TTTGTTTGTTTGGGAGGTAT+CGG 0.435440 3_3:+36323684 None:intergenic
CTACATCGATCTCACTCATT+TGG 0.435617 3_3:-36326123 Msa0450630:five_prime_UTR
ACGCAACTTATTTCGTATGT+AGG 0.436013 3_3:+36323188 None:intergenic
AATTTGTTTGTTTGTTTGGG+AGG 0.440214 3_3:+36323678 None:intergenic
ATCGCATCTACACCGTACTT+TGG 0.443101 3_3:-36325676 Msa0450630:CDS
GGTGGTCGTGTCCGTGGTGT+TGG 0.446741 3_3:-36323913 Msa0450630:three_prime_UTR
GTATGCTTTGCGAAACGATT+GGG 0.447406 3_3:-36322465 Msa0450630:three_prime_UTR
AGCACATTTGTTGAGGAAGA+AGG 0.449173 3_3:+36325376 None:intergenic
TTTCTAGCTGGGAGATATGT+TGG 0.453566 3_3:-36322353 Msa0450630:three_prime_UTR
CTGCTAATATTACTACCTCT+TGG 0.458064 3_3:-36322637 Msa0450630:three_prime_UTR
TGAACCTTCTTGTTTGATTG+TGG 0.458208 3_3:-36322238 Msa0450630:three_prime_UTR
ATGGAGACACTCAAGAATAT+GGG 0.460318 3_3:-36323712 Msa0450630:three_prime_UTR
TATACTTACTCCATAAGAAA+TGG 0.463209 3_3:+36323138 None:intergenic
ACACATAGTTATAAAACAAA+TGG 0.463463 3_3:+36327168 None:intergenic
CAAATTTGACGAACTCGCTC+AGG 0.467109 3_3:-36326033 Msa0450630:intron
AAGAAAATCACAAGGACGAT+TGG 0.468203 3_3:-36323594 Msa0450630:three_prime_UTR
AGATATATGGGAGAAGTTTG+TGG 0.470943 3_3:-36324570 Msa0450630:three_prime_UTR
GGTTCGTTGGCTTCGTCCTA+AGG 0.473165 3_3:-36322809 Msa0450630:intron
TGCCTTTATTTAAATGCAAG+TGG 0.474761 3_3:-36325609 Msa0450630:CDS
GGATGATGGTTTGTGGGGAC+CGG 0.476464 3_3:-36324688 Msa0450630:three_prime_UTR
AAGGAATCTCAGAAATATGA+AGG 0.477334 3_3:+36325395 None:intergenic
GCTACTATAAGCAATTACTT+TGG 0.477808 3_3:-36323883 Msa0450630:three_prime_UTR
GTTATGTAGCATTTCTTGCT+CGG 0.478017 3_3:-36324954 Msa0450630:three_prime_UTR
GGTGTAAGAATTGATGAATC+TGG 0.483968 3_3:-36325571 Msa0450630:CDS
GAACATTTATAGAGATGTAA+TGG 0.487971 3_3:+36326436 None:intergenic
CCTCCACGAGATAATGTATG+TGG 0.495099 3_3:+36324387 None:intergenic
TGAAGACCTTAATTAGAAAG+TGG 0.495660 3_3:+36327115 None:intergenic
GTTAAAATTAGAACATGGTC+CGG 0.496286 3_3:-36323509 Msa0450630:three_prime_UTR
TACAAAGTGTTGTCGAATAG+AGG 0.496498 3_3:-36326647 Msa0450630:five_prime_UTR
GAAACTTAGGATTTATTAGG+AGG 0.497449 3_3:-36322419 Msa0450630:three_prime_UTR
CGATGTTCACGCTATTCGTT+CGG 0.498862 3_3:-36325326 Msa0450630:CDS
GATCTTAACACAATTCATAA+GGG 0.501230 3_3:+36326458 None:intergenic
GAAGACCTTAATTAGAAAGT+GGG 0.502525 3_3:+36327116 None:intergenic
TGTGTTAAAGATTTGTTGGT+TGG 0.502675 3_3:-36323457 Msa0450630:three_prime_UTR
AATCAGTTGCAACAGAAAGA+AGG 0.504285 3_3:+36327031 None:intergenic
TCACAGATCCTTCTAACAAA+AGG 0.506294 3_3:-36325465 Msa0450630:CDS
TTAAAGATTTGTTGGTTGGC+GGG 0.506662 3_3:-36323453 Msa0450630:three_prime_UTR
AGAGAGCACGACAAAAGAAA+GGG 0.507249 3_3:-36324257 Msa0450630:three_prime_UTR
TTAGGTTCACTAGATGAAGA+AGG 0.507451 3_3:+36325105 None:intergenic
CGTGTCCGTGGTGTTGGAAG+AGG 0.509158 3_3:-36323907 Msa0450630:three_prime_UTR
CAACCTAACACAACTGATTG+TGG 0.514100 3_3:-36322695 Msa0450630:three_prime_UTR
GAAAGAACAAATTTATCGAC+GGG 0.516377 3_3:+36326796 None:intergenic
GTATACTAACCTAAAATTCA+GGG 0.517529 3_3:+36324534 None:intergenic
TAGAATATGATCAAATTCTC+CGG 0.517940 3_3:+36324308 None:intergenic
TTTACGTGTATAGAGAGCAT+TGG 0.518826 3_3:-36323057 Msa0450630:intron
AAGAGAGCACGACAAAAGAA+AGG 0.521144 3_3:-36324258 Msa0450630:three_prime_UTR
ATGAGACTAAGAGCAAGTTC+GGG 0.523256 3_3:+36326063 None:intergenic
CTATAACCCCTTATATAGCA+TGG 0.524295 3_3:+36326317 None:intergenic
ATTCGTTCGGATCATAATGA+AGG 0.524386 3_3:-36325313 Msa0450630:CDS
GAGATAATGTATGTGGGTAA+AGG 0.527971 3_3:+36324394 None:intergenic
GCTTGGGATGCCATAATGAA+AGG 0.529509 3_3:+36325505 None:intergenic
AATGACATTCTTTGCAAGGA+AGG 0.529850 3_3:+36326214 None:intergenic
GTTAAAGATTTGTTGGTTGG+CGG 0.530884 3_3:-36323454 Msa0450630:three_prime_UTR
TGATGGTTTGTGGGGACCGG+TGG 0.532136 3_3:-36324685 Msa0450630:three_prime_UTR
TGTATGCTTTGCGAAACGAT+TGG 0.532235 3_3:-36322466 Msa0450630:three_prime_UTR
GTTGTGTTAGGAAGCGCAAA+AGG 0.533308 3_3:-36323634 Msa0450630:three_prime_UTR
TATTACTACCTCTTGGATGA+AGG 0.535487 3_3:-36322630 Msa0450630:intron
GGATGACGGCGGTCTTCGGA+AGG 0.538258 3_3:+36324620 None:intergenic
CGTAGTCATGGATCGTAGGT+GGG 0.539269 3_3:-36325756 Msa0450630:five_prime_UTR
ACGGACACGACCACCATGCT+CGG 0.542869 3_3:+36323921 None:intergenic
ATTAATCGTCATTTGTCCAA+AGG 0.543300 3_3:-36323032 Msa0450630:three_prime_UTR
AATTAATGACATTCTTTGCA+AGG 0.544247 3_3:+36326210 None:intergenic
CTATAAGCAATTACTTTGGA+AGG 0.545590 3_3:-36323879 Msa0450630:three_prime_UTR
TAGGTTCACTAGATGAAGAA+GGG 0.546611 3_3:+36325106 None:intergenic
ATCAGTTGCAACAGAAAGAA+GGG 0.548550 3_3:+36327032 None:intergenic
TAAAGATTTGTTGGTTGGCG+GGG 0.551969 3_3:-36323452 Msa0450630:three_prime_UTR
AGATCTTGACACAACAATGA+AGG 0.553286 3_3:-36322975 Msa0450630:three_prime_UTR
TTTGCAAATGTAGGACTCGT+TGG 0.555861 3_3:-36324016 Msa0450630:intron
GTTTGTGGGGACCGGTGGAG+AGG 0.557784 3_3:-36324680 Msa0450630:three_prime_UTR
GAGGTTCATCAATTAGCAAA+CGG 0.566698 3_3:-36322844 Msa0450630:three_prime_UTR
TCTTCAATCACCCCAAAGTA+CGG 0.568086 3_3:+36325664 None:intergenic
ACGTAGTCATGGATCGTAGG+TGG 0.568616 3_3:-36325757 Msa0450630:five_prime_UTR
AGAAAGAACAAATTTATCGA+CGG 0.573266 3_3:+36326795 None:intergenic
TTACCTTGAAGATAAAATGA+TGG 0.575253 3_3:-36324358 Msa0450630:three_prime_UTR
CGCATCTACACCGTACTTTG+GGG 0.575634 3_3:-36325674 Msa0450630:CDS
TATGAACAAAGTGTGTTACT+TGG 0.580249 3_3:-36323163 Msa0450630:three_prime_UTR
TGTTTGTTTCAATACAGAGA+TGG 0.581219 3_3:+36323292 None:intergenic
TACACTGGTTGATCTTTGCA+AGG 0.582812 3_3:-36325545 Msa0450630:CDS
GGAGGTAAGCACATTTGTTG+AGG 0.583897 3_3:+36325369 None:intergenic
TTGTCCAAAGGATAATACAT+TGG 0.585455 3_3:-36323020 Msa0450630:three_prime_UTR
AACTGGTTCTGTATTCATTG+CGG 0.587743 3_3:+36323215 None:intergenic
TTCCATTTGTCATGACGTGA+CGG 0.588309 3_3:+36324279 None:intergenic
TTGGAAGGTCTTCATGCCCA+AGG 0.589537 3_3:-36323864 Msa0450630:three_prime_UTR
GAAGGAAGTCTTAATTGTCA+TGG 0.589670 3_3:+36326232 None:intergenic
AGTAGAGTTCGAACAACAGA+TGG 0.590629 3_3:-36323767 Msa0450630:three_prime_UTR
GTGTCTTAAAACCTCTCCAC+CGG 0.595488 3_3:+36324669 None:intergenic
GAGATATGTTGGCACTTGAA+GGG 0.596298 3_3:-36322342 Msa0450630:three_prime_UTR
TACCCACATACATTATCTCG+TGG 0.605189 3_3:-36324390 Msa0450630:three_prime_UTR
GATCTTTGTTAAATGAACAA+AGG 0.606945 3_3:+36322993 None:intergenic
ACATCCACAATCAAACAAGA+AGG 0.607861 3_3:+36322234 None:intergenic
TTCGTTCGGATCATAATGAA+GGG 0.609573 3_3:-36325312 Msa0450630:CDS
TTCTTGTGTAAACAGGCACA+TGG 0.610377 3_3:-36325145 Msa0450630:intron
AAGACCTTAATTAGAAAGTG+GGG 0.610586 3_3:+36327117 None:intergenic
GAGAGCACGACAAAAGAAAG+GGG 0.611004 3_3:-36324256 Msa0450630:three_prime_UTR
ATCTCTGAATCTCACTCACT+CGG 0.613532 3_3:-36326097 Msa0450630:five_prime_UTR
GATGACGGCGGTCTTCGGAA+GGG 0.616407 3_3:+36324621 None:intergenic
AGAACGTAGTCATGGATCGT+AGG 0.617787 3_3:-36325760 Msa0450630:five_prime_UTR
GATTTGGAGAGTGAGATCTA+GGG 0.619026 3_3:+36327236 None:intergenic
TATACTAACCTAAAATTCAG+GGG 0.621551 3_3:+36324535 None:intergenic
GCTATTGGAACATCCGAGCA+TGG 0.623254 3_3:-36323934 Msa0450630:three_prime_UTR
GGGTTCGTATGAACATTGTG+AGG 0.624868 3_3:+36327256 None:intergenic
TGGCCTGAAATTCAATCTGG+TGG 0.625961 3_3:-36327055 Msa0450630:five_prime_UTR
GTAGTCATGGATCGTAGGTG+GGG 0.629647 3_3:-36325755 Msa0450630:five_prime_UTR
ACGGTGTAGATGCGATTACA+GGG 0.631417 3_3:+36325683 None:intergenic
TGGGATCCATGCTATATAAG+GGG 0.634843 3_3:-36326323 Msa0450630:five_prime_UTR
ACTAGATGAAGAAGGGATGT+CGG 0.635996 3_3:+36325113 None:intergenic
AAGATATCATGACGTCCTTG+TGG 0.638516 3_3:+36323964 None:intergenic
GGTTCGTATGAACATTGTGA+GGG 0.640675 3_3:+36327257 None:intergenic
ACTTAGTTTAGAATTTAACT+GGG 0.640680 3_3:-36326342 Msa0450630:five_prime_UTR
CAGATCCTTCTAACAAAAGG+TGG 0.641197 3_3:-36325462 Msa0450630:CDS
GAGCATGGTGGTCGTGTCCG+TGG 0.646629 3_3:-36323919 Msa0450630:three_prime_UTR
CTCCACGAGATAATGTATGT+GGG 0.647609 3_3:+36324388 None:intergenic
AGGAATCTCAGAAATATGAA+GGG 0.648128 3_3:+36325396 None:intergenic
CTAAGGTTAAAATTAGAACA+TGG 0.649969 3_3:-36323514 Msa0450630:three_prime_UTR
TGATGAATCTGGTTATACAC+TGG 0.650914 3_3:-36325560 Msa0450630:CDS
TTTGTAGACTCATCTACATG+CGG 0.651154 3_3:+36324901 None:intergenic
AGAGCACGACAAAAGAAAGG+GGG 0.662182 3_3:-36324255 Msa0450630:three_prime_UTR
GGTGATTGAAGAGATTTGGG+AGG 0.662334 3_3:-36325653 Msa0450630:CDS
TTGCATCATCTGTTGCGCTG+TGG 0.666549 3_3:+36323744 None:intergenic
CATTTGTCATGACGTGACGG+CGG 0.670962 3_3:+36324282 None:intergenic
AAAGGAACATTTGTACCACA+AGG 0.673901 3_3:-36323979 Msa0450630:three_prime_UTR
ATGGTATACCTTCATCCAAG+AGG 0.683941 3_3:+36322622 None:intergenic
AAGTGGATTGATATTAACAC+TGG 0.684138 3_3:-36325592 Msa0450630:CDS
CCACATACATTATCTCGTGG+AGG 0.684741 3_3:-36324387 Msa0450630:three_prime_UTR
AAAATGGATGATGGTTTGTG+GGG 0.689791 3_3:-36324693 Msa0450630:three_prime_UTR
AAGGGCTATATATCAAGACA+AGG 0.691208 3_3:+36326476 None:intergenic
ATTGTTGTGTTACAGCAGAG+CGG 0.700583 3_3:-36326622 Msa0450630:five_prime_UTR
TGCAGCACAAGAAAATCACA+AGG 0.701471 3_3:-36323602 Msa0450630:three_prime_UTR
ACGTCATGATATCTTAACAG+AGG 0.706045 3_3:-36323956 Msa0450630:three_prime_UTR
ATTGGAACATCCGAGCATGG+TGG 0.721014 3_3:-36323931 Msa0450630:three_prime_UTR
TAGCACCTCTTCCAACACCA+CGG 0.722854 3_3:+36323902 None:intergenic
GGGGTTATAGAGACACACAA+TGG 0.743782 3_3:-36326304 Msa0450630:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGAAGAAAAAAAAAAT+TGG + chr3_3:36322256-36322275 None:intergenic 10.0%
!!! TATTTTTTTTATTTGATTGA+AGG - chr3_3:36323170-36323189 Msa0450630:three_prime_UTR 10.0%
!! ATATACTAAATTAAAGAATA+GGG + chr3_3:36323545-36323564 None:intergenic 10.0%
!!! TAATGAATTTGATTTATAAT+AGG - chr3_3:36324883-36324902 Msa0450630:three_prime_UTR 10.0%
!!! TATTGATTTCATATTTATTT+AGG - chr3_3:36326014-36326033 Msa0450630:intron 10.0%
!! TAAAAATTAAATTCATTTGT+AGG - chr3_3:36326611-36326630 Msa0450630:five_prime_UTR 10.0%
!! AAATAAGTAAAATAACAATA+AGG + chr3_3:36326792-36326811 None:intergenic 10.0%
!!! TTTTTCTTCAAAATTTATAC+TGG - chr3_3:36322262-36322281 Msa0450630:three_prime_UTR 15.0%
!!! TCATATTTCTTGAATTTTAT+TGG - chr3_3:36322435-36322454 Msa0450630:three_prime_UTR 15.0%
!! CATATACTAAATTAAAGAAT+AGG + chr3_3:36323546-36323565 None:intergenic 15.0%
!! AATAAATATAAAAACACATG+TGG + chr3_3:36324089-36324108 None:intergenic 15.0%
!! TGAAAAAAATTAACAAAGTT+CGG - chr3_3:36324281-36324300 Msa0450630:three_prime_UTR 15.0%
!! TAGATACAATAATGAAATTA+GGG + chr3_3:36324519-36324538 None:intergenic 15.0%
!! ATAGATACAATAATGAAATT+AGG + chr3_3:36324520-36324539 None:intergenic 15.0%
!! AATCATAAAAAAAAATCAAG+TGG + chr3_3:36324560-36324579 None:intergenic 15.0%
!!! TTTTCATCAAAAAGATATAT+GGG - chr3_3:36324755-36324774 Msa0450630:intron 15.0%
!! TAAACAATTAAATTAGTACA+AGG + chr3_3:36324849-36324868 None:intergenic 15.0%
!! CCAAAAAAAATAGATTAAAA+AGG + chr3_3:36325279-36325298 None:intergenic 15.0%
!!! CCTTTTTAATCTATTTTTTT+TGG - chr3_3:36325276-36325295 Msa0450630:intron 15.0%
!!! ATTTAAAACTCAATTTTGTT+GGG + chr3_3:36326096-36326115 None:intergenic 15.0%
!! TTTGGAAATATATGTATATA+TGG + chr3_3:36326750-36326769 None:intergenic 15.0%
!!! TATGTCTATCTATTTTAATT+TGG + chr3_3:36326768-36326787 None:intergenic 15.0%
!!! TAATCTATTTTATAAACTGT+AGG - chr3_3:36326812-36326831 Msa0450630:five_prime_UTR 15.0%
!! ACACATAGTTATAAAACAAA+TGG + chr3_3:36322172-36322191 None:intergenic 20.0%
!!! CTTTATGGTTTTTCATTTTT+TGG - chr3_3:36322361-36322380 Msa0450630:three_prime_UTR 20.0%
!!! AAAAGTAAGTTTAAGGTATT+AGG + chr3_3:36322785-36322804 None:intergenic 20.0%
!!! AATACCTTAAACTTACTTTT+TGG - chr3_3:36322785-36322804 Msa0450630:intron 20.0%
!!! ATACCTTAAACTTACTTTTT+GGG - chr3_3:36322786-36322805 Msa0450630:intron 20.0%
!!! AACTTAGTTTAGAATTTAAC+TGG - chr3_3:36322994-36323013 Msa0450630:three_prime_UTR 20.0%
!!! ACTTAGTTTAGAATTTAACT+GGG - chr3_3:36322995-36323014 Msa0450630:three_prime_UTR 20.0%
!! AAAAAATTCAATGAAACTAC+AGG + chr3_3:36323344-36323363 None:intergenic 20.0%
!!! TATTGCATAAATTGTTTTTG+TGG - chr3_3:36323467-36323486 Msa0450630:three_prime_UTR 20.0%
!!! GTAGTATTTTAATAGATGAT+TGG - chr3_3:36324413-36324432 Msa0450630:three_prime_UTR 20.0%
!!! TTTTTCAAAGCATCTTTTTT+TGG + chr3_3:36324625-36324644 None:intergenic 20.0%
!!! AAAGATGCTTTGAAAAAAAA+TGG - chr3_3:36324628-36324647 Msa0450630:three_prime_UTR 20.0%
!!! CATATATCTTTTTGATGAAA+AGG + chr3_3:36324756-36324775 None:intergenic 20.0%
!!! CTTTTCATCAAAAAGATATA+TGG - chr3_3:36324754-36324773 Msa0450630:three_prime_UTR 20.0%
!! ATAATAGGAAAAAAGTCAAA+AGG - chr3_3:36324898-36324917 Msa0450630:three_prime_UTR 20.0%
!! TAATAGGAAAAAAGTCAAAA+GGG - chr3_3:36324899-36324918 Msa0450630:three_prime_UTR 20.0%
!! ATGTAATTTGGATAAGTAAT+TGG - chr3_3:36325218-36325237 Msa0450630:intron 20.0%
!!! ATTTTTTTTGGATTGTCATT+TGG - chr3_3:36325288-36325307 Msa0450630:intron 20.0%
!!! TTCAATTTGTTTGTTTGTTT+GGG + chr3_3:36325665-36325684 None:intergenic 20.0%
!! ATTAAGAAATTTATGACTTC+CGG + chr3_3:36325850-36325869 None:intergenic 20.0%
!!! AACAAATCTTTAACACATTT+TGG + chr3_3:36325877-36325896 None:intergenic 20.0%
!! AAAATGTGTTAAAGATTTGT+TGG - chr3_3:36325876-36325895 Msa0450630:intron 20.0%
!!! GATTTAAAACTCAATTTTGT+TGG + chr3_3:36326097-36326116 None:intergenic 20.0%
!! TATGAAACTTAGGATTTATT+AGG - chr3_3:36326915-36326934 Msa0450630:five_prime_UTR 20.0%
!! CAATGTTTAATTAGTATTGT+TGG - chr3_3:36326951-36326970 Msa0450630:five_prime_UTR 20.0%
!! AGTACCAAAACAAAAAAAAA+AGG + chr3_3:36327026-36327045 None:intergenic 20.0%
!!! TTTTGTTTGATTTAGAAGAA+TGG - chr3_3:36327170-36327189 Msa0450630:five_prime_UTR 20.0%
!! TTTGTCTATTCAAAGAAAAA+AGG - chr3_3:36327224-36327243 Msa0450630:five_prime_UTR 20.0%
!! TTGTCTATTCAAAGAAAAAA+GGG - chr3_3:36327225-36327244 Msa0450630:five_prime_UTR 20.0%
! TGAACAAAAATGCAGAAATA+GGG + chr3_3:36322145-36322164 None:intergenic 25.0%
! ATGAACAAAAATGCAGAAAT+AGG + chr3_3:36322146-36322165 None:intergenic 25.0%
! AGAAAGAACAAATTTATCGA+CGG + chr3_3:36322545-36322564 None:intergenic 25.0%
!! CGTTGATAGATTTACTTTAT+AGG - chr3_3:36322579-36322598 Msa0450630:intron 25.0%
! TAACCCAAAAAGTAAGTTTA+AGG + chr3_3:36322792-36322811 None:intergenic 25.0%
! TTAAGAGTTGTGAATAGTTT+GGG + chr3_3:36322823-36322842 None:intergenic 25.0%
! GATCTTAACACAATTCATAA+GGG + chr3_3:36322882-36322901 None:intergenic 25.0%
! GAACATTTATAGAGATGTAA+TGG + chr3_3:36322904-36322923 None:intergenic 25.0%
! TTACATCTCTATAAATGTTC+AGG - chr3_3:36322904-36322923 Msa0450630:intron 25.0%
! AATTAATGACATTCTTTGCA+AGG + chr3_3:36323130-36323149 None:intergenic 25.0%
! ATCCACTTGCATTTAAATAA+AGG + chr3_3:36323733-36323752 None:intergenic 25.0%
!!! ATAAAACACTTGTTTTGCTT+GGG + chr3_3:36323851-36323870 None:intergenic 25.0%
! ATCTAGTGAACCTAAAAAAA+GGG - chr3_3:36324240-36324259 Msa0450630:three_prime_UTR 25.0%
!! CTTTGAAAAAAAATGGATGA+TGG - chr3_3:36324635-36324654 Msa0450630:three_prime_UTR 25.0%
! TATACTAACCTAAAATTCAG+GGG + chr3_3:36324805-36324824 None:intergenic 25.0%
! GTATACTAACCTAAAATTCA+GGG + chr3_3:36324806-36324825 None:intergenic 25.0%
! TTACCTTGAAGATAAAATGA+TGG - chr3_3:36324979-36324998 Msa0450630:three_prime_UTR 25.0%
! TAGAATATGATCAAATTCTC+CGG + chr3_3:36325032-36325051 None:intergenic 25.0%
! ATAAATAGATGATGTGTGTT+TGG - chr3_3:36325193-36325212 Msa0450630:intron 25.0%
! GATGATGCAAAAATCATTTA+TGG - chr3_3:36325606-36325625 Msa0450630:CDS 25.0%
!! GTTCAATTTGTTTGTTTGTT+TGG + chr3_3:36325666-36325685 None:intergenic 25.0%
! TTTCTGAACATTGTCAATAA+TGG + chr3_3:36325770-36325789 None:intergenic 25.0%
! CTAAGGTTAAAATTAGAACA+TGG - chr3_3:36325823-36325842 Msa0450630:intron 25.0%
! ACAAACAAATCAAATGTGTT+TGG - chr3_3:36326061-36326080 Msa0450630:five_prime_UTR 25.0%
!! ATCAAATGTGTTTGGATTTT+TGG - chr3_3:36326069-36326088 Msa0450630:five_prime_UTR 25.0%
! TATACTTACTCCATAAGAAA+TGG + chr3_3:36326202-36326221 None:intergenic 25.0%
! GATCTTTGTTAAATGAACAA+AGG + chr3_3:36326347-36326366 None:intergenic 25.0%
! AGCAAACGGTATTAAAAAAA+AGG - chr3_3:36326507-36326526 Msa0450630:five_prime_UTR 25.0%
! GTATTAAAAAAAAGGTTCGT+TGG - chr3_3:36326515-36326534 Msa0450630:five_prime_UTR 25.0%
! ATTAAATTCATTTGTAGGCA+AGG - chr3_3:36326616-36326635 Msa0450630:five_prime_UTR 25.0%
!!! GTTTTTTGTTATTTCTAGCT+GGG - chr3_3:36326973-36326992 Msa0450630:five_prime_UTR 25.0%
!!! GAGACCTTTTTTTTTTGTTT+TGG - chr3_3:36327019-36327038 Msa0450630:five_prime_UTR 25.0%
!!! AAAAAAGGGCATATTTTATC+TGG - chr3_3:36327239-36327258 Msa0450630:five_prime_UTR 25.0%
TTAACCCCACTTTCTAATTA+AGG - chr3_3:36322216-36322235 Msa0450630:three_prime_UTR 30.0%
AAGACCTTAATTAGAAAGTG+GGG + chr3_3:36322223-36322242 None:intergenic 30.0%
GAAGACCTTAATTAGAAAGT+GGG + chr3_3:36322224-36322243 None:intergenic 30.0%
TGAAGACCTTAATTAGAAAG+TGG + chr3_3:36322225-36322244 None:intergenic 30.0%
TTCTTCACTTGTCTTCTTTA+TGG - chr3_3:36322346-36322365 Msa0450630:three_prime_UTR 30.0%
GAAAGAACAAATTTATCGAC+GGG + chr3_3:36322544-36322563 None:intergenic 30.0%
AGTAAATCTATCAACGACTA+TGG + chr3_3:36322575-36322594 None:intergenic 30.0%
CTTTATAGGTTGTCCTTATA+CGG - chr3_3:36322593-36322612 Msa0450630:intron 30.0%
AGTCATACTAAAACCGTATA+AGG + chr3_3:36322609-36322628 None:intergenic 30.0%
GTTAAGAGTTGTGAATAGTT+TGG + chr3_3:36322824-36322843 None:intergenic 30.0%
GGATCTTAACACAATTCATA+AGG + chr3_3:36322883-36322902 None:intergenic 30.0%
GTCTAACAGAATTGAGAATA+GGG + chr3_3:36322957-36322976 None:intergenic 30.0%
AGTCTAACAGAATTGAGAAT+AGG + chr3_3:36322958-36322977 None:intergenic 30.0%
! TAATTTTCAGAACGTAGTCA+TGG - chr3_3:36323569-36323588 Msa0450630:three_prime_UTR 30.0%
! TGCCTTTATTTAAATGCAAG+TGG - chr3_3:36323728-36323747 Msa0450630:three_prime_UTR 30.0%
!! AAGTGGATTGATATTAACAC+TGG - chr3_3:36323745-36323764 Msa0450630:three_prime_UTR 30.0%
!!! CATAAAACACTTGTTTTGCT+TGG + chr3_3:36323852-36323871 None:intergenic 30.0%
AGGAATCTCAGAAATATGAA+GGG + chr3_3:36323944-36323963 None:intergenic 30.0%
AAGGAATCTCAGAAATATGA+AGG + chr3_3:36323945-36323964 None:intergenic 30.0%
CATCTAGTGAACCTAAAAAA+AGG - chr3_3:36324239-36324258 Msa0450630:three_prime_UTR 30.0%
GACAACAAGTGTGAAATTAA+AGG - chr3_3:36324303-36324322 Msa0450630:three_prime_UTR 30.0%
TTGAGTTCGATTCAAAAACT+GGG - chr3_3:36324326-36324345 Msa0450630:three_prime_UTR 30.0%
TCAAAAACTGGGAAATGTTA+TGG - chr3_3:36324337-36324356 Msa0450630:three_prime_UTR 30.0%
AGTCTACAAAAGACTCAATT+TGG - chr3_3:36324449-36324468 Msa0450630:intron 30.0%
!!! AAAGCATCTTTTTTTGGATC+TGG + chr3_3:36324619-36324638 None:intergenic 30.0%
! AAAAAATGGATGATGGTTTG+TGG - chr3_3:36324642-36324661 Msa0450630:three_prime_UTR 30.0%
! AAAAATGGATGATGGTTTGT+GGG - chr3_3:36324643-36324662 Msa0450630:three_prime_UTR 30.0%
!! TGAAAAGGATACTTTTCAAG+TGG + chr3_3:36324741-36324760 None:intergenic 30.0%
CGTATACTAACCTAAAATTC+AGG + chr3_3:36324807-36324826 None:intergenic 30.0%
!!! GAATTTTAGGTTAGTATACG+TGG - chr3_3:36324807-36324826 Msa0450630:intron 30.0%
! CATCCATCATTTTATCTTCA+AGG + chr3_3:36324985-36325004 None:intergenic 30.0%
GGATGAAAAGAGAAAAAGAA+TGG - chr3_3:36325000-36325019 Msa0450630:three_prime_UTR 30.0%
GTGTGTTTGGATATGTAATT+TGG - chr3_3:36325206-36325225 Msa0450630:intron 30.0%
! TATGTGTGTTTTGCAAATGT+AGG - chr3_3:36325312-36325331 Msa0450630:CDS 30.0%
TTGGTTGAAAGAACTGAAAA+AGG - chr3_3:36325340-36325359 Msa0450630:CDS 30.0%
GCTACTATAAGCAATTACTT+TGG - chr3_3:36325454-36325473 Msa0450630:CDS 30.0%
CTATAAGCAATTACTTTGGA+AGG - chr3_3:36325458-36325477 Msa0450630:CDS 30.0%
! AATTTTTGCTTCAATCTCAC+TGG + chr3_3:36325512-36325531 None:intergenic 30.0%
ACTTGCAGCAAAAATTAAAG+CGG - chr3_3:36325540-36325559 Msa0450630:CDS 30.0%
! AATTTGTTTGTTTGTTTGGG+AGG + chr3_3:36325662-36325681 None:intergenic 30.0%
!!! ACAACAACTTTTTCAGAACA+AGG + chr3_3:36325688-36325707 None:intergenic 30.0%
TCTGAAAAAGTTGTTGTGTT+AGG - chr3_3:36325691-36325710 Msa0450630:CDS 30.0%
TGAAAGAGAAGCAATATCTA+AGG - chr3_3:36325806-36325825 Msa0450630:intron 30.0%
GTTAAAATTAGAACATGGTC+CGG - chr3_3:36325828-36325847 Msa0450630:intron 30.0%
!! TGTGTTAAAGATTTGTTGGT+TGG - chr3_3:36325880-36325899 Msa0450630:intron 30.0%
ACTATTCTACTCTACAAGTT+TGG - chr3_3:36325917-36325936 Msa0450630:intron 30.0%
TGTTTGTTTCAATACAGAGA+TGG + chr3_3:36326048-36326067 None:intergenic 30.0%
TTTCGTATGTAGGATTTAAC+TGG + chr3_3:36326142-36326161 None:intergenic 30.0%
! TATGAACAAAGTGTGTTACT+TGG - chr3_3:36326174-36326193 Msa0450630:five_prime_UTR 30.0%
ATTAATCGTCATTTGTCCAA+AGG - chr3_3:36326305-36326324 Msa0450630:five_prime_UTR 30.0%
TTGTCCAAAGGATAATACAT+TGG - chr3_3:36326317-36326336 Msa0450630:five_prime_UTR 30.0%
ACAACCAATGTATTATCCTT+TGG + chr3_3:36326324-36326343 None:intergenic 30.0%
!! GTTCTACGTTTTAGTGTTAT+AGG + chr3_3:36326440-36326459 None:intergenic 30.0%
!!! ATTTTTTTAACCTAGTGCTC+TGG - chr3_3:36326471-36326490 Msa0450630:five_prime_UTR 30.0%
GTATATATGGTGCAAACATA+TGG + chr3_3:36326737-36326756 None:intergenic 30.0%
! TCTAGAAGTGTATGAAACTT+AGG - chr3_3:36326905-36326924 Msa0450630:five_prime_UTR 30.0%
GAAACTTAGGATTTATTAGG+AGG - chr3_3:36326918-36326937 Msa0450630:five_prime_UTR 30.0%
!!! GGTTTTTTGTTATTTCTAGC+TGG - chr3_3:36326972-36326991 Msa0450630:five_prime_UTR 30.0%
!!! TTTTTTTGTTTTGGTACTGC+TGG - chr3_3:36327028-36327047 Msa0450630:five_prime_UTR 30.0%
!!! TTTTTTGTTTTGGTACTGCT+GGG - chr3_3:36327029-36327048 Msa0450630:five_prime_UTR 30.0%
! TGTTGACATAGACATTTTGA+AGG - chr3_3:36327147-36327166 Msa0450630:five_prime_UTR 30.0%
! CGTATTTAGGATTTGGGATT+TGG + chr3_3:36322120-36322139 None:intergenic 35.0%
! AGGGTTCGTATTTAGGATTT+GGG + chr3_3:36322126-36322145 None:intergenic 35.0%
! TAGGGTTCGTATTTAGGATT+TGG + chr3_3:36322127-36322146 None:intergenic 35.0%
CAGAAATAGGGTTCGTATTT+AGG + chr3_3:36322133-36322152 None:intergenic 35.0%
ATCAGTTGCAACAGAAAGAA+GGG + chr3_3:36322308-36322327 None:intergenic 35.0%
AATCAGTTGCAACAGAAAGA+AGG + chr3_3:36322309-36322328 None:intergenic 35.0%
TCTCGTTATGATGAACGATT+TGG - chr3_3:36322395-36322414 Msa0450630:three_prime_UTR 35.0%
CAAAAATGATCTCCATCTAG+AGG - chr3_3:36322629-36322648 Msa0450630:intron 35.0%
CTATAAAGACAACCTCTAGA+TGG + chr3_3:36322644-36322663 None:intergenic 35.0%
CATCTAGAGGTTGTCTTTAT+AGG - chr3_3:36322642-36322661 Msa0450630:three_prime_UTR 35.0%
!! CTCTCAACTGATTTGCTATT+TGG - chr3_3:36322667-36322686 Msa0450630:three_prime_UTR 35.0%
!! TACAAAGTGTTGTCGAATAG+AGG - chr3_3:36322690-36322709 Msa0450630:three_prime_UTR 35.0%
AAGGGCTATATATCAAGACA+AGG + chr3_3:36322864-36322883 None:intergenic 35.0%
TGCTAGCTGTTGTGATTATT+TGG - chr3_3:36322930-36322949 Msa0450630:intron 35.0%
CTATAACCCCTTATATAGCA+TGG + chr3_3:36323023-36323042 None:intergenic 35.0%
GAAGGAAGTCTTAATTGTCA+TGG + chr3_3:36323108-36323127 None:intergenic 35.0%
AATGACATTCTTTGCAAGGA+AGG + chr3_3:36323126-36323145 None:intergenic 35.0%
TATGAGACTAAGAGCAAGTT+CGG + chr3_3:36323278-36323297 None:intergenic 35.0%
GGTGTAAGAATTGATGAATC+TGG - chr3_3:36323766-36323785 Msa0450630:three_prime_UTR 35.0%
TGATGAATCTGGTTATACAC+TGG - chr3_3:36323777-36323796 Msa0450630:three_prime_UTR 35.0%
TAAGGACGAACCTTTCATTA+TGG - chr3_3:36323822-36323841 Msa0450630:three_prime_UTR 35.0%
TCACAGATCCTTCTAACAAA+AGG - chr3_3:36323872-36323891 Msa0450630:three_prime_UTR 35.0%
ATTCGTTCGGATCATAATGA+AGG - chr3_3:36324024-36324043 Msa0450630:intron 35.0%
TTCGTTCGGATCATAATGAA+GGG - chr3_3:36324025-36324044 Msa0450630:intron 35.0%
AAAACACATGTGGCATACAT+GGG + chr3_3:36324079-36324098 None:intergenic 35.0%
AAAAACACATGTGGCATACA+TGG + chr3_3:36324080-36324099 None:intergenic 35.0%
! TGCGTTTTTCTTGTGTAAAC+AGG - chr3_3:36324185-36324204 Msa0450630:intron 35.0%
TAGGTTCACTAGATGAAGAA+GGG + chr3_3:36324234-36324253 None:intergenic 35.0%
TTAGGTTCACTAGATGAAGA+AGG + chr3_3:36324235-36324254 None:intergenic 35.0%
GAACCTAAAAAAAGGGTTAG+AGG - chr3_3:36324247-36324266 Msa0450630:three_prime_UTR 35.0%
!!! CAACCTCTAACCCTTTTTTT+AGG + chr3_3:36324253-36324272 None:intergenic 35.0%
GTTGAGTTCGATTCAAAAAC+TGG - chr3_3:36324325-36324344 Msa0450630:three_prime_UTR 35.0%
GTTATGTAGCATTTCTTGCT+CGG - chr3_3:36324383-36324402 Msa0450630:three_prime_UTR 35.0%
TTTGTAGACTCATCTACATG+CGG + chr3_3:36324439-36324458 None:intergenic 35.0%
CTCAATTTGGCATGATCTTA+AGG - chr3_3:36324462-36324481 Msa0450630:intron 35.0%
! AAAATGGATGATGGTTTGTG+GGG - chr3_3:36324644-36324663 Msa0450630:three_prime_UTR 35.0%
!!! GATACTTTTCAAGTGGATGA+CGG + chr3_3:36324734-36324753 None:intergenic 35.0%
AGATATATGGGAGAAGTTTG+TGG - chr3_3:36324767-36324786 Msa0450630:intron 35.0%
AGGAAAAAAGTCAAAAGGGT+AGG - chr3_3:36324903-36324922 Msa0450630:three_prime_UTR 35.0%
GGAAAAAAGTCAAAAGGGTA+GGG - chr3_3:36324904-36324923 Msa0450630:three_prime_UTR 35.0%
GAGATAATGTATGTGGGTAA+AGG + chr3_3:36324946-36324965 None:intergenic 35.0%
AGAAAAAGAATGGAAGACTC+CGG - chr3_3:36325010-36325029 Msa0450630:three_prime_UTR 35.0%
! ATATGTGTGTTTTGCAAACG+TGG - chr3_3:36325241-36325260 Msa0450630:intron 35.0%
AAAGGAACATTTGTACCACA+AGG - chr3_3:36325358-36325377 Msa0450630:CDS 35.0%
ACGTCATGATATCTTAACAG+AGG - chr3_3:36325381-36325400 Msa0450630:CDS 35.0%
GATATCTTAACAGAGGCTAT+TGG - chr3_3:36325388-36325407 Msa0450630:CDS 35.0%
! TGGCATTTATGTTTTGCCTT+GGG + chr3_3:36325492-36325511 None:intergenic 35.0%
TATGGAGACACTCAAGAATA+TGG - chr3_3:36325624-36325643 Msa0450630:CDS 35.0%
ATGGAGACACTCAAGAATAT+GGG - chr3_3:36325625-36325644 Msa0450630:CDS 35.0%
! TTTGTTTGTTTGGGAGGTAT+CGG + chr3_3:36325656-36325675 None:intergenic 35.0%
AAGAAAATCACAAGGACGAT+TGG - chr3_3:36325743-36325762 Msa0450630:exon 35.0%
!! GTTAAAGATTTGTTGGTTGG+CGG - chr3_3:36325883-36325902 Msa0450630:intron 35.0%
!! TTAAAGATTTGTTGGTTGGC+GGG - chr3_3:36325884-36325903 Msa0450630:intron 35.0%
!! AACTGGTTCTGTATTCATTG+CGG + chr3_3:36326125-36326144 None:intergenic 35.0%
ACGCAACTTATTTCGTATGT+AGG + chr3_3:36326152-36326171 None:intergenic 35.0%
TTACTTGGCACCATTTCTTA+TGG - chr3_3:36326189-36326208 Msa0450630:five_prime_UTR 35.0%
! TTTACGTGTATAGAGAGCAT+TGG - chr3_3:36326280-36326299 Msa0450630:five_prime_UTR 35.0%
AGATCTTGACACAACAATGA+AGG - chr3_3:36326362-36326381 Msa0450630:five_prime_UTR 35.0%
GAGGTTCATCAATTAGCAAA+CGG - chr3_3:36326493-36326512 Msa0450630:five_prime_UTR 35.0%
ATCTTGTCTACACATACCTT+AGG + chr3_3:36326547-36326566 None:intergenic 35.0%
TAAGGTATGTGTAGACAAGA+TGG - chr3_3:36326546-36326565 Msa0450630:five_prime_UTR 35.0%
TATCCACAATCAGTTGTGTT+AGG + chr3_3:36326648-36326667 None:intergenic 35.0%
CTGCTAATATTACTACCTCT+TGG - chr3_3:36326700-36326719 Msa0450630:five_prime_UTR 35.0%
TATTACTACCTCTTGGATGA+AGG - chr3_3:36326707-36326726 Msa0450630:five_prime_UTR 35.0%
! TGAACCTTCTTGTTTGATTG+TGG - chr3_3:36327099-36327118 Msa0450630:five_prime_UTR 35.0%
ACATCCACAATCAAACAAGA+AGG + chr3_3:36327106-36327125 None:intergenic 35.0%
ACAGCAACCAAAAACAAGAA+GGG + chr3_3:36327130-36327149 None:intergenic 35.0%
AACAGCAACCAAAAACAAGA+AGG + chr3_3:36327131-36327150 None:intergenic 35.0%
!!! ATTTTATCTGGTCTTGTACC+AGG - chr3_3:36327251-36327270 Msa0450630:five_prime_UTR 35.0%
GGTTCGTATGAACATTGTGA+GGG + chr3_3:36322083-36322102 None:intergenic 40.0%
GATTTGGAGAGTGAGATCTA+GGG + chr3_3:36322104-36322123 None:intergenic 40.0%
! TACTGGCCTGAAATTCAATC+TGG - chr3_3:36322279-36322298 Msa0450630:three_prime_UTR 40.0%
ATTGTTGTGTTACAGCAGAG+CGG - chr3_3:36322715-36322734 Msa0450630:intron 40.0%
ACTGGGATCCATGCTATATA+AGG - chr3_3:36323012-36323031 Msa0450630:three_prime_UTR 40.0%
CTGGGATCCATGCTATATAA+GGG - chr3_3:36323013-36323032 Msa0450630:three_prime_UTR 40.0%
TGGGATCCATGCTATATAAG+GGG - chr3_3:36323014-36323033 Msa0450630:three_prime_UTR 40.0%
CTACATCGATCTCACTCATT+TGG - chr3_3:36323214-36323233 Msa0450630:three_prime_UTR 40.0%
ATCTCTGAATCTCACTCACT+CGG - chr3_3:36323240-36323259 Msa0450630:three_prime_UTR 40.0%
ATGAGACTAAGAGCAAGTTC+GGG + chr3_3:36323277-36323296 None:intergenic 40.0%
TGAGAATAGTCCATTGAGAG+AGG - chr3_3:36323411-36323430 Msa0450630:intron 40.0%
ATGTGAACCCTAGACTTAGT+AGG - chr3_3:36323516-36323535 Msa0450630:three_prime_UTR 40.0%
TCTTCAATCACCCCAAAGTA+CGG + chr3_3:36323676-36323695 None:intergenic 40.0%
TTGGGGTGATTGAAGAGATT+TGG - chr3_3:36323680-36323699 Msa0450630:three_prime_UTR 40.0%
TGGGGTGATTGAAGAGATTT+GGG - chr3_3:36323681-36323700 Msa0450630:three_prime_UTR 40.0%
! TACACTGGTTGATCTTTGCA+AGG - chr3_3:36323792-36323811 Msa0450630:three_prime_UTR 40.0%
TCTTTGCAAGGCAGCTTATA+AGG - chr3_3:36323804-36323823 Msa0450630:three_prime_UTR 40.0%
CAGATCCTTCTAACAAAAGG+TGG - chr3_3:36323875-36323894 Msa0450630:three_prime_UTR 40.0%
! ACTGACCACCTTTTGTTAGA+AGG + chr3_3:36323883-36323902 None:intergenic 40.0%
CTACAACCAAAAAACACGCA+TGG - chr3_3:36323907-36323926 Msa0450630:three_prime_UTR 40.0%
!!! TCACTACCATGCGTGTTTTT+TGG + chr3_3:36323916-36323935 None:intergenic 40.0%
! AGCACATTTGTTGAGGAAGA+AGG + chr3_3:36323964-36323983 None:intergenic 40.0%
! TGCTTCATTTTCTACGATGG+AGG + chr3_3:36323989-36324008 None:intergenic 40.0%
! GTCTGCTTCATTTTCTACGA+TGG + chr3_3:36323992-36324011 None:intergenic 40.0%
TTCTTGTGTAAACAGGCACA+TGG - chr3_3:36324192-36324211 Msa0450630:intron 40.0%
ACTAGATGAAGAAGGGATGT+CGG + chr3_3:36324227-36324246 None:intergenic 40.0%
! TCGAAAGACCCCTGAATTTT+AGG - chr3_3:36324794-36324813 Msa0450630:intron 40.0%
TACCCACATACATTATCTCG+TGG - chr3_3:36324947-36324966 Msa0450630:three_prime_UTR 40.0%
CTCCACGAGATAATGTATGT+GGG + chr3_3:36324952-36324971 None:intergenic 40.0%
TTCCATTTGTCATGACGTGA+CGG + chr3_3:36325061-36325080 None:intergenic 40.0%
! AAGAGAGCACGACAAAAGAA+AGG - chr3_3:36325079-36325098 Msa0450630:three_prime_UTR 40.0%
! AGAGAGCACGACAAAAGAAA+GGG - chr3_3:36325080-36325099 Msa0450630:three_prime_UTR 40.0%
TTTGCAAATGTAGGACTCGT+TGG - chr3_3:36325321-36325340 Msa0450630:CDS 40.0%
AAGATATCATGACGTCCTTG+TGG + chr3_3:36325376-36325395 None:intergenic 40.0%
! CTGGCATTTATGTTTTGCCT+TGG + chr3_3:36325493-36325512 None:intergenic 40.0%
AGTAGAGTTCGAACAACAGA+TGG - chr3_3:36325570-36325589 Msa0450630:CDS 40.0%
TGCAGCACAAGAAAATCACA+AGG - chr3_3:36325735-36325754 Msa0450630:exon 40.0%
!! TAAAGATTTGTTGGTTGGCG+GGG - chr3_3:36325885-36325904 Msa0450630:intron 40.0%
! TTTTTAACCTAGTGCTCTGG+AGG - chr3_3:36326474-36326493 Msa0450630:five_prime_UTR 40.0%
CAACCTAACACAACTGATTG+TGG - chr3_3:36326642-36326661 Msa0450630:five_prime_UTR 40.0%
ATGGTATACCTTCATCCAAG+AGG + chr3_3:36326718-36326737 None:intergenic 40.0%
TGTATGCTTTGCGAAACGAT+TGG - chr3_3:36326871-36326890 Msa0450630:five_prime_UTR 40.0%
GTATGCTTTGCGAAACGATT+GGG - chr3_3:36326872-36326891 Msa0450630:five_prime_UTR 40.0%
!! TTTCTAGCTGGGAGATATGT+TGG - chr3_3:36326984-36327003 Msa0450630:five_prime_UTR 40.0%
GAGATATGTTGGCACTTGAA+GGG - chr3_3:36326995-36327014 Msa0450630:five_prime_UTR 40.0%
!!! GGATGTACCCTTCTTGTTTT+TGG - chr3_3:36327120-36327139 Msa0450630:five_prime_UTR 40.0%
GGGTTCGTATGAACATTGTG+AGG + chr3_3:36322084-36322103 None:intergenic 45.0%
GGATTTGGAGAGTGAGATCT+AGG + chr3_3:36322105-36322124 None:intergenic 45.0%
TGGCCTGAAATTCAATCTGG+TGG - chr3_3:36322282-36322301 Msa0450630:three_prime_UTR 45.0%
GGGGTTATAGAGACACACAA+TGG - chr3_3:36323033-36323052 Msa0450630:three_prime_UTR 45.0%
CTGAGCGAGTTCGTCAAATT+TGG + chr3_3:36323306-36323325 None:intergenic 45.0%
CAAATTTGACGAACTCGCTC+AGG - chr3_3:36323304-36323323 Msa0450630:three_prime_UTR 45.0%
AGTCCATTGAGAGAGGTCTT+TGG - chr3_3:36323418-36323437 Msa0450630:three_prime_UTR 45.0%
AGGGATGCCTACTAAGTCTA+GGG + chr3_3:36323526-36323545 None:intergenic 45.0%
TAGGGATGCCTACTAAGTCT+AGG + chr3_3:36323527-36323546 None:intergenic 45.0%
AGAACGTAGTCATGGATCGT+AGG - chr3_3:36323577-36323596 Msa0450630:three_prime_UTR 45.0%
ACGGTGTAGATGCGATTACA+GGG + chr3_3:36323657-36323676 None:intergenic 45.0%
TACGGTGTAGATGCGATTAC+AGG + chr3_3:36323658-36323677 None:intergenic 45.0%
ATCGCATCTACACCGTACTT+TGG - chr3_3:36323661-36323680 Msa0450630:three_prime_UTR 45.0%
TCGCATCTACACCGTACTTT+GGG - chr3_3:36323662-36323681 Msa0450630:three_prime_UTR 45.0%
GGTGATTGAAGAGATTTGGG+AGG - chr3_3:36323684-36323703 Msa0450630:three_prime_UTR 45.0%
GCTTGGGATGCCATAATGAA+AGG + chr3_3:36323835-36323854 None:intergenic 45.0%
! GGAGGTAAGCACATTTGTTG+AGG + chr3_3:36323971-36323990 None:intergenic 45.0%
CGATGTTCACGCTATTCGTT+CGG - chr3_3:36324011-36324030 Msa0450630:intron 45.0%
GGATCTGGATCATCACTTTC+TGG + chr3_3:36324604-36324623 None:intergenic 45.0%
GTGTCTTAAAACCTCTCCAC+CGG + chr3_3:36324671-36324690 None:intergenic 45.0%
!!! ACTTTTCAAGTGGATGACGG+CGG + chr3_3:36324731-36324750 None:intergenic 45.0%
CCTCCACGAGATAATGTATG+TGG + chr3_3:36324953-36324972 None:intergenic 45.0%
CCACATACATTATCTCGTGG+AGG - chr3_3:36324950-36324969 Msa0450630:three_prime_UTR 45.0%
! GAGAGCACGACAAAAGAAAG+GGG - chr3_3:36325081-36325100 Msa0450630:three_prime_UTR 45.0%
AGAGCACGACAAAAGAAAGG+GGG - chr3_3:36325082-36325101 Msa0450630:three_prime_UTR 45.0%
! GTTGTGTTAGGAAGCGCAAA+AGG - chr3_3:36325703-36325722 Msa0450630:CDS 45.0%
GGAGATATGTTGGCACTTGA+AGG - chr3_3:36326994-36327013 Msa0450630:five_prime_UTR 45.0%
GGGCCACCAGATTGAATTTC+AGG + chr3_3:36322288-36322307 None:intergenic 50.0%
CCATTGAGAGAGGTCTTTGG+CGG - chr3_3:36323421-36323440 Msa0450630:three_prime_UTR 50.0%
ACGTAGTCATGGATCGTAGG+TGG - chr3_3:36323580-36323599 Msa0450630:three_prime_UTR 50.0%
CGTAGTCATGGATCGTAGGT+GGG - chr3_3:36323581-36323600 Msa0450630:three_prime_UTR 50.0%
GTAGTCATGGATCGTAGGTG+GGG - chr3_3:36323582-36323601 Msa0450630:three_prime_UTR 50.0%
CGCATCTACACCGTACTTTG+GGG - chr3_3:36323663-36323682 Msa0450630:three_prime_UTR 50.0%
CATTTGTCATGACGTGACGG+CGG + chr3_3:36325058-36325077 None:intergenic 50.0%
AGGGGGAGAATACACAACAG+AGG - chr3_3:36325099-36325118 Msa0450630:three_prime_UTR 50.0%
GCTATTGGAACATCCGAGCA+TGG - chr3_3:36325403-36325422 Msa0450630:CDS 50.0%
ATTGGAACATCCGAGCATGG+TGG - chr3_3:36325406-36325425 Msa0450630:CDS 50.0%
TAGCACCTCTTCCAACACCA+CGG + chr3_3:36325438-36325457 None:intergenic 50.0%
TTGGAAGGTCTTCATGCCCA+AGG - chr3_3:36325473-36325492 Msa0450630:CDS 50.0%
TTGCATCATCTGTTGCGCTG+TGG + chr3_3:36325596-36325615 None:intergenic 50.0%
! TGATGAACCTCCAGAGCACT+AGG + chr3_3:36326484-36326503 None:intergenic 50.0%
CCGCCAAAGACCTCTCTCAA+TGG + chr3_3:36323424-36323443 None:intergenic 55.0%
TTGAGAGAGGTCTTTGGCGG+TGG - chr3_3:36323424-36323443 Msa0450630:three_prime_UTR 55.0%
TGGCGGTGGACATGTTGTGT+TGG - chr3_3:36323438-36323457 Msa0450630:three_prime_UTR 55.0%
GGCGGTGGACATGTTGTGTT+GGG - chr3_3:36323439-36323458 Msa0450630:three_prime_UTR 55.0%
GCGGTGGACATGTTGTGTTG+GGG - chr3_3:36323440-36323459 Msa0450630:three_prime_UTR 55.0%
! GGATGATGGTTTGTGGGGAC+CGG - chr3_3:36324649-36324668 Msa0450630:three_prime_UTR 55.0%
! AAGTGGATGACGGCGGTCTT+CGG + chr3_3:36324724-36324743 None:intergenic 55.0%
CGCCGTCACGTCATGACAAA+TGG - chr3_3:36325056-36325075 Msa0450630:three_prime_UTR 55.0%
! ATTTGTTGGTTGGCGGGGCT+TGG - chr3_3:36325890-36325909 Msa0450630:intron 55.0%
!! GGTTCGTTGGCTTCGTCCTA+AGG - chr3_3:36326528-36326547 Msa0450630:five_prime_UTR 55.0%
! TGATGGTTTGTGGGGACCGG+TGG - chr3_3:36324652-36324671 Msa0450630:three_prime_UTR 60.0%
! GATGACGGCGGTCTTCGGAA+GGG + chr3_3:36324719-36324738 None:intergenic 60.0%
ACGGACACGACCACCATGCT+CGG + chr3_3:36325419-36325438 None:intergenic 60.0%
! CGTGTCCGTGGTGTTGGAAG+AGG - chr3_3:36325430-36325449 Msa0450630:CDS 60.0%
GTTTGTGGGGACCGGTGGAG+AGG - chr3_3:36324657-36324676 Msa0450630:three_prime_UTR 65.0%
! GGATGACGGCGGTCTTCGGA+AGG + chr3_3:36324720-36324739 None:intergenic 65.0%
GAGCATGGTGGTCGTGTCCG+TGG - chr3_3:36325418-36325437 Msa0450630:CDS 65.0%
GGTGGTCGTGTCCGTGGTGT+TGG - chr3_3:36325424-36325443 Msa0450630:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 36322074 36327285 36322074 ID=Msa0450630;Name=Msa0450630
chr3_3 mRNA 36322074 36327285 36322074 ID=Msa0450630-mRNA-1;Parent=Msa0450630;Name=Msa0450630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1280|1|1|1|0.5|0.54|11|2255|150
chr3_3 exon 36322074 36322525 36322074 ID=Msa0450630-mRNA-1:exon:6660;Parent=Msa0450630-mRNA-1
chr3_3 exon 36322631 36322726 36322631 ID=Msa0450630-mRNA-1:exon:6659;Parent=Msa0450630-mRNA-1
chr3_3 exon 36322810 36322873 36322810 ID=Msa0450630-mRNA-1:exon:6658;Parent=Msa0450630-mRNA-1
chr3_3 exon 36322962 36323066 36322962 ID=Msa0450630-mRNA-1:exon:6657;Parent=Msa0450630-mRNA-1
chr3_3 exon 36323147 36323323 36323147 ID=Msa0450630-mRNA-1:exon:6656;Parent=Msa0450630-mRNA-1
chr3_3 exon 36323415 36324025 36323415 ID=Msa0450630-mRNA-1:exon:6655;Parent=Msa0450630-mRNA-1
chr3_3 exon 36324212 36324454 36324212 ID=Msa0450630-mRNA-1:exon:6654;Parent=Msa0450630-mRNA-1
chr3_3 exon 36324544 36324773 36324544 ID=Msa0450630-mRNA-1:exon:6653;Parent=Msa0450630-mRNA-1
chr3_3 exon 36324876 36325152 36324876 ID=Msa0450630-mRNA-1:exon:6652;Parent=Msa0450630-mRNA-1
chr3_3 exon 36325300 36325780 36325300 ID=Msa0450630-mRNA-1:exon:6651;Parent=Msa0450630-mRNA-1
chr3_3 exon 36326034 36327285 36326034 ID=Msa0450630-mRNA-1:exon:6650;Parent=Msa0450630-mRNA-1
chr3_3 five_prime_UTR 36326034 36327285 36326034 ID=Msa0450630-mRNA-1:five_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 five_prime_UTR 36325753 36325780 36325753 ID=Msa0450630-mRNA-1:five_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 CDS 36325300 36325752 36325300 ID=Msa0450630-mRNA-1:cds;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36324876 36325152 36324876 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36324544 36324773 36324544 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36324212 36324454 36324212 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36323415 36324025 36323415 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36323147 36323323 36323147 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36322962 36323066 36322962 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36322810 36322873 36322810 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36322631 36322726 36322631 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
chr3_3 three_prime_UTR 36322074 36322525 36322074 ID=Msa0450630-mRNA-1:three_prime_utr;Parent=Msa0450630-mRNA-1
Gene Sequence

>Msa0450630

ATGATTGTTGCTGAGTCAATGCATTTCTCTAGTTCAAAAGATAAAAACCCTGTAATCGCATCTACACCGTACTTTGGGGTGATTGAAGAGATTTGGGAGGTTGATTATCGTGCATTTTCAGTGCCTTTATTTAAATGCAAGTGGATTGATATTAACACTGGTGTAAGAATTGATGAATCTGGTTATACACTGGTTGATCTTTGCAAGGCAGCTTATAAGGACGAACCTTTCATTATGGCATCCCAAGCAAAACAAGTGTTTTATGTCACAGATCCTTCTAACAAAAGGTGGTCAGTTGTTCTACAACCAAAAAACACGCATGGTAGTGATGAAACCCTTCATATTTCTGAGATTCCTTCTTCCTCAACAAATGTGCTTACCTCCATCGTAGAAAATGAAGCAGACGATGTTCACGCTATTCGTTCGGATCATAATGAAGGGATATATGAATAA
Protein sequence

>Msa0450630

MIVAESMHFSSSKDKNPVIASTPYFGVIEEIWEVDYRAFSVPLFKCKWIDINTGVRIDESGYTLVDLCKAAYKDEPFIMASQAKQVFYVTDPSNKRWSVVLQPKNTHGSDETLHISEIPSSSTNVLTSIVENEADDVHAIRSDHNEGIYE*