AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846210 MtrunA17_Chr5g0399611 76.471 34 8 0 53 86 299 332 7.39e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 44 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTGTTATACCCTCATTT+TGG 0.158518 5_4:+25856823 Msa0846210:three_prime_UTR
TATTGTAGCCGCTCTTTAAT+TGG 0.232426 5_4:+25856751 Msa0846210:three_prime_UTR
AAACAGAAGACGATGTGATA+TGG 0.312038 5_4:-25855434 None:intergenic
CTGTTTGATTTGATCTTTAG+TGG 0.319870 5_4:+25855451 Msa0846210:CDS
AGCTTACCCTTCTATCTTCC+AGG 0.320309 5_4:-25856515 None:intergenic
TAACCGAATCATGATGGATT+TGG 0.357701 5_4:-25855309 None:intergenic
TTGCTAACCTGGAAGATAGA+AGG 0.399917 5_4:+25856508 Msa0846210:CDS
CCATCGTAATAACCGTCTTC+AGG 0.404143 5_4:+25855589 Msa0846210:CDS
TTGGAGTGGTAGGCACAAAT+TGG 0.412153 5_4:+25856770 Msa0846210:three_prime_UTR
ATGGATTTGGTTGCTGCATC+AGG 0.425079 5_4:-25855296 None:intergenic
GAGGGTGAGAAGGTTCTAAA+GGG 0.446500 5_4:+25855243 Msa0846210:five_prime_UTR
AGAGGGTGAGAAGGTTCTAA+AGG 0.453878 5_4:+25855242 Msa0846210:five_prime_UTR
CATAGAGCCTTTACATGTGC+CGG 0.472967 5_4:+25855549 Msa0846210:intron
TAACACTTGTTCCAGTGTCA+TGG 0.475284 5_4:-25856448 None:intergenic
ACTCATGCCGGCACATGTAA+AGG 0.475614 5_4:-25855556 None:intergenic
TTTCCATTGTTATTGTCTCC+AGG 0.476783 5_4:+25855486 Msa0846210:CDS
AACAATCTTGAATAGTAGAT+AGG 0.481422 5_4:+25856728 Msa0846210:three_prime_UTR
AACACTTGTTCCAGTGTCAT+GGG 0.487789 5_4:-25856447 None:intergenic
ACTTGCAGTTTACTGATAAG+TGG 0.491989 5_4:+25856654 Msa0846210:three_prime_UTR
TGATGATGGAGTTGCTAACC+TGG 0.496868 5_4:+25856497 Msa0846210:CDS
CAGTTTACTGATAAGTGGGC+AGG 0.496917 5_4:+25856659 Msa0846210:three_prime_UTR
AACAGAAGACGATGTGATAT+GGG 0.506013 5_4:-25855433 None:intergenic
CAACCAAATCCATCATGATT+CGG 0.506042 5_4:+25855306 Msa0846210:exon
GAATACTAACCGAATCATGA+TGG 0.524672 5_4:-25855315 None:intergenic
TAAGAACAGAGAGGGTGAGA+AGG 0.532550 5_4:+25855233 Msa0846210:five_prime_UTR
CAATTTCGTCTTCGTTATCA+CGG 0.532588 5_4:-25856476 None:intergenic
AACGAAGACGAAATTGATGA+TGG 0.533326 5_4:+25856483 Msa0846210:CDS
TTTGATTTGATCTTTAGTGG+TGG 0.547432 5_4:+25855454 Msa0846210:CDS
AAGAAGATTAAGAACAGAGA+GGG 0.547991 5_4:+25855225 Msa0846210:five_prime_UTR
CGCTCTTTAATTGGAGTGGT+AGG 0.554406 5_4:+25856760 Msa0846210:three_prime_UTR
TTGATTTGATCTTTAGTGGT+GGG 0.556033 5_4:+25855455 Msa0846210:CDS
CTTGCAGTTTACTGATAAGT+GGG 0.559276 5_4:+25856655 Msa0846210:three_prime_UTR
TGCTAACCTGGAAGATAGAA+GGG 0.563120 5_4:+25856509 Msa0846210:CDS
AGGGTGAGAAGGTTCTAAAG+GGG 0.575073 5_4:+25855244 Msa0846210:five_prime_UTR
TAGCCGCTCTTTAATTGGAG+TGG 0.592376 5_4:+25856756 Msa0846210:three_prime_UTR
GTTGATGAAGCCCATGACAC+TGG 0.608770 5_4:+25856437 Msa0846210:intron
CCTGAAGACGGTTATTACGA+TGG 0.646498 5_4:-25855589 None:intergenic
GGATAATCTGAAACTCATGC+CGG 0.650370 5_4:-25855568 None:intergenic
ACTAAGTAAGTACCTGAAGA+CGG 0.658147 5_4:-25855601 None:intergenic
GTAGAATGAACATGGACATG+TGG 0.668399 5_4:+25856626 Msa0846210:three_prime_UTR
AAAGAAGATTAAGAACAGAG+AGG 0.671740 5_4:+25855224 Msa0846210:five_prime_UTR
GTACCTGGAGACAATAACAA+TGG 0.672525 5_4:-25855489 None:intergenic
TAGAATGAACATGGACATGT+GGG 0.679383 5_4:+25856627 Msa0846210:three_prime_UTR
CTACCACTCCAATTAAAGAG+CGG 0.685540 5_4:-25856759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATATTAAATCCATTTA+TGG - chr5_4:25856122-25856141 None:intergenic 10.0%
!! TTTAATATTAAATCCATTTA+TGG - chr5_4:25856122-25856141 None:intergenic 10.0%
!!! AAATTTGAGATTTTCATATT+GGG - chr5_4:25855407-25855426 None:intergenic 15.0%
!!! ATAAAATTTCTAAAAGCTAA+TGG - chr5_4:25856215-25856234 None:intergenic 15.0%
!! AGGATTAATTAGATAATATA+TGG + chr5_4:25856308-25856327 Msa0846210:intron 15.0%
!!! AAATTTGAGATTTTCATATT+GGG - chr5_4:25855407-25855426 None:intergenic 15.0%
!!! ATAAAATTTCTAAAAGCTAA+TGG - chr5_4:25856215-25856234 None:intergenic 15.0%
!! AGGATTAATTAGATAATATA+TGG + chr5_4:25856308-25856327 Msa0846210:intron 15.0%
!!! AATTTGAGATTTTCATATTG+GGG - chr5_4:25855406-25855425 None:intergenic 20.0%
!!! GAAATTTGAGATTTTCATAT+TGG - chr5_4:25855408-25855427 None:intergenic 20.0%
!! GATTGAAAACAAAACAAAAA+AGG - chr5_4:25855828-25855847 None:intergenic 20.0%
!! ATAATGGTAATTAGAAAATG+AGG - chr5_4:25856153-25856172 None:intergenic 20.0%
!!! TCATTTTCTAATTACCATTA+TGG + chr5_4:25856152-25856171 Msa0846210:intron 20.0%
!! CTAATGGTAATTACAAAATA+TGG - chr5_4:25856199-25856218 None:intergenic 20.0%
!!! AGAAATGAGTTAGTATTTTT+AGG - chr5_4:25856850-25856869 None:intergenic 20.0%
!!! AATTTGAGATTTTCATATTG+GGG - chr5_4:25855406-25855425 None:intergenic 20.0%
!!! GAAATTTGAGATTTTCATAT+TGG - chr5_4:25855408-25855427 None:intergenic 20.0%
!! GATTGAAAACAAAACAAAAA+AGG - chr5_4:25855828-25855847 None:intergenic 20.0%
!! ATAATGGTAATTAGAAAATG+AGG - chr5_4:25856153-25856172 None:intergenic 20.0%
!!! TCATTTTCTAATTACCATTA+TGG + chr5_4:25856152-25856171 Msa0846210:intron 20.0%
!! CTAATGGTAATTACAAAATA+TGG - chr5_4:25856199-25856218 None:intergenic 20.0%
!!! AGAAATGAGTTAGTATTTTT+AGG - chr5_4:25856850-25856869 None:intergenic 20.0%
! TTCACGTGATTACATTTAAA+AGG - chr5_4:25855770-25855789 None:intergenic 25.0%
! GAAAACAAAACAAAAAAGGA+TGG - chr5_4:25855824-25855843 None:intergenic 25.0%
! TTGACAAAAATGAGTATATC+AGG - chr5_4:25855860-25855879 None:intergenic 25.0%
! GTCTAGTATTAAATCCATAA+TGG - chr5_4:25856169-25856188 None:intergenic 25.0%
! ATGACAATCTGCAAATTATA+TGG - chr5_4:25856341-25856360 None:intergenic 25.0%
!!! CAAATTCTGTTTTTCTTCTT+TGG + chr5_4:25856549-25856568 Msa0846210:CDS 25.0%
!!! AGATTTTAGATTGTTACTTC+TGG + chr5_4:25856594-25856613 Msa0846210:exon 25.0%
!!! GATTTTAGATTGTTACTTCT+GGG + chr5_4:25856595-25856614 Msa0846210:exon 25.0%
! AACAATCTTGAATAGTAGAT+AGG + chr5_4:25856728-25856747 Msa0846210:three_prime_UTR 25.0%
!!! TATTTTTAGGTCCAAAATGA+GGG - chr5_4:25856837-25856856 None:intergenic 25.0%
! TTCACGTGATTACATTTAAA+AGG - chr5_4:25855770-25855789 None:intergenic 25.0%
! GAAAACAAAACAAAAAAGGA+TGG - chr5_4:25855824-25855843 None:intergenic 25.0%
! TTGACAAAAATGAGTATATC+AGG - chr5_4:25855860-25855879 None:intergenic 25.0%
! GTCTAGTATTAAATCCATAA+TGG - chr5_4:25856169-25856188 None:intergenic 25.0%
! ATGACAATCTGCAAATTATA+TGG - chr5_4:25856341-25856360 None:intergenic 25.0%
!!! CAAATTCTGTTTTTCTTCTT+TGG + chr5_4:25856549-25856568 Msa0846210:CDS 25.0%
!!! AGATTTTAGATTGTTACTTC+TGG + chr5_4:25856594-25856613 Msa0846210:exon 25.0%
!!! GATTTTAGATTGTTACTTCT+GGG + chr5_4:25856595-25856614 Msa0846210:exon 25.0%
! AACAATCTTGAATAGTAGAT+AGG + chr5_4:25856728-25856747 Msa0846210:three_prime_UTR 25.0%
!!! TATTTTTAGGTCCAAAATGA+GGG - chr5_4:25856837-25856856 None:intergenic 25.0%
AAAGAAGATTAAGAACAGAG+AGG + chr5_4:25855224-25855243 Msa0846210:five_prime_UTR 30.0%
AAGAAGATTAAGAACAGAGA+GGG + chr5_4:25855225-25855244 Msa0846210:five_prime_UTR 30.0%
AACACAAACAGAAAATCCTA+AGG - chr5_4:25855366-25855385 None:intergenic 30.0%
!! CTGTTTGATTTGATCTTTAG+TGG + chr5_4:25855451-25855470 Msa0846210:CDS 30.0%
!! TTTGATTTGATCTTTAGTGG+TGG + chr5_4:25855454-25855473 Msa0846210:CDS 30.0%
! TTGATTTGATCTTTAGTGGT+GGG + chr5_4:25855455-25855474 Msa0846210:CDS 30.0%
AGATAACTGTTGAACCAAAA+AGG - chr5_4:25856092-25856111 None:intergenic 30.0%
!!! TTTTTGGTTCAACAGTTATC+TGG + chr5_4:25856091-25856110 Msa0846210:intron 30.0%
!!! CTACTGGTTTTCATGTTTTT+AGG + chr5_4:25856288-25856307 Msa0846210:intron 30.0%
!! CATAGCTTTAGTACTTGATA+TGG + chr5_4:25856358-25856377 Msa0846210:intron 30.0%
! CATGTTTTGTAGAATGAACA+TGG + chr5_4:25856618-25856637 Msa0846210:three_prime_UTR 30.0%
!!! GTATTTTTAGGTCCAAAATG+AGG - chr5_4:25856838-25856857 None:intergenic 30.0%
TCTTCTTATCTTGCATTTCA+AGG + chr5_4:25856867-25856886 Msa0846210:three_prime_UTR 30.0%
AAAGAAGATTAAGAACAGAG+AGG + chr5_4:25855224-25855243 Msa0846210:five_prime_UTR 30.0%
AAGAAGATTAAGAACAGAGA+GGG + chr5_4:25855225-25855244 Msa0846210:five_prime_UTR 30.0%
AACACAAACAGAAAATCCTA+AGG - chr5_4:25855366-25855385 None:intergenic 30.0%
!! CTGTTTGATTTGATCTTTAG+TGG + chr5_4:25855451-25855470 Msa0846210:CDS 30.0%
!! TTTGATTTGATCTTTAGTGG+TGG + chr5_4:25855454-25855473 Msa0846210:CDS 30.0%
! TTGATTTGATCTTTAGTGGT+GGG + chr5_4:25855455-25855474 Msa0846210:CDS 30.0%
AGATAACTGTTGAACCAAAA+AGG - chr5_4:25856092-25856111 None:intergenic 30.0%
!!! TTTTTGGTTCAACAGTTATC+TGG + chr5_4:25856091-25856110 Msa0846210:intron 30.0%
!!! CTACTGGTTTTCATGTTTTT+AGG + chr5_4:25856288-25856307 Msa0846210:intron 30.0%
!! CATAGCTTTAGTACTTGATA+TGG + chr5_4:25856358-25856377 Msa0846210:intron 30.0%
! CATGTTTTGTAGAATGAACA+TGG + chr5_4:25856618-25856637 Msa0846210:three_prime_UTR 30.0%
!!! GTATTTTTAGGTCCAAAATG+AGG - chr5_4:25856838-25856857 None:intergenic 30.0%
!!! TTTTTTTCAGCTGGTTCGAT+GGG - chr5_4:25855195-25855214 None:intergenic 35.0%
CAACCAAATCCATCATGATT+CGG + chr5_4:25855306-25855325 Msa0846210:exon 35.0%
!! TAACCGAATCATGATGGATT+TGG - chr5_4:25855312-25855331 None:intergenic 35.0%
GAATACTAACCGAATCATGA+TGG - chr5_4:25855318-25855337 None:intergenic 35.0%
AGGTGATTCATATGTTGGAT+AGG - chr5_4:25855346-25855365 None:intergenic 35.0%
TCCAACATATGAATCACCTT+AGG + chr5_4:25855347-25855366 Msa0846210:intron 35.0%
TCCTAAGGTGATTCATATGT+TGG - chr5_4:25855351-25855370 None:intergenic 35.0%
AACAGAAGACGATGTGATAT+GGG - chr5_4:25855436-25855455 None:intergenic 35.0%
AAACAGAAGACGATGTGATA+TGG - chr5_4:25855437-25855456 None:intergenic 35.0%
! TTTCCATTGTTATTGTCTCC+AGG + chr5_4:25855486-25855505 Msa0846210:CDS 35.0%
ACCTGCATCGTAATGAATTT+CGG + chr5_4:25855510-25855529 Msa0846210:intron 35.0%
AGGCTCTATGAAAGTTGAAA+TGG - chr5_4:25855539-25855558 None:intergenic 35.0%
ACTAAGTAAGTACCTGAAGA+CGG - chr5_4:25855604-25855623 None:intergenic 35.0%
TTATCTGGCATCTCCATAAA+TGG + chr5_4:25856106-25856125 Msa0846210:intron 35.0%
! TCTAACAAACAAGAGTGCAT+GGG + chr5_4:25856246-25856265 Msa0846210:intron 35.0%
! AATATCAACTGAAGTGCTAC+TGG + chr5_4:25856272-25856291 Msa0846210:intron 35.0%
ACACACAACAAAATGAGCAA+TGG - chr5_4:25856419-25856438 None:intergenic 35.0%
CAATTTCGTCTTCGTTATCA+CGG - chr5_4:25856479-25856498 None:intergenic 35.0%
AACGAAGACGAAATTGATGA+TGG + chr5_4:25856483-25856502 Msa0846210:CDS 35.0%
TAGAATGAACATGGACATGT+GGG + chr5_4:25856627-25856646 Msa0846210:three_prime_UTR 35.0%
ACTTGCAGTTTACTGATAAG+TGG + chr5_4:25856654-25856673 Msa0846210:three_prime_UTR 35.0%
CTTGCAGTTTACTGATAAGT+GGG + chr5_4:25856655-25856674 Msa0846210:three_prime_UTR 35.0%
TATTGTAGCCGCTCTTTAAT+TGG + chr5_4:25856751-25856770 Msa0846210:three_prime_UTR 35.0%
! CTGTTGTTATACCCTCATTT+TGG + chr5_4:25856823-25856842 Msa0846210:three_prime_UTR 35.0%
!!! TTTTTTTCAGCTGGTTCGAT+GGG - chr5_4:25855195-25855214 None:intergenic 35.0%
CAACCAAATCCATCATGATT+CGG + chr5_4:25855306-25855325 Msa0846210:exon 35.0%
!! TAACCGAATCATGATGGATT+TGG - chr5_4:25855312-25855331 None:intergenic 35.0%
GAATACTAACCGAATCATGA+TGG - chr5_4:25855318-25855337 None:intergenic 35.0%
AGGTGATTCATATGTTGGAT+AGG - chr5_4:25855346-25855365 None:intergenic 35.0%
TCCAACATATGAATCACCTT+AGG + chr5_4:25855347-25855366 Msa0846210:intron 35.0%
TCCTAAGGTGATTCATATGT+TGG - chr5_4:25855351-25855370 None:intergenic 35.0%
AACAGAAGACGATGTGATAT+GGG - chr5_4:25855436-25855455 None:intergenic 35.0%
AAACAGAAGACGATGTGATA+TGG - chr5_4:25855437-25855456 None:intergenic 35.0%
! TTTCCATTGTTATTGTCTCC+AGG + chr5_4:25855486-25855505 Msa0846210:CDS 35.0%
ACCTGCATCGTAATGAATTT+CGG + chr5_4:25855510-25855529 Msa0846210:intron 35.0%
AGGCTCTATGAAAGTTGAAA+TGG - chr5_4:25855539-25855558 None:intergenic 35.0%
ACTAAGTAAGTACCTGAAGA+CGG - chr5_4:25855604-25855623 None:intergenic 35.0%
TTATCTGGCATCTCCATAAA+TGG + chr5_4:25856106-25856125 Msa0846210:intron 35.0%
! TCTAACAAACAAGAGTGCAT+GGG + chr5_4:25856246-25856265 Msa0846210:intron 35.0%
! AATATCAACTGAAGTGCTAC+TGG + chr5_4:25856272-25856291 Msa0846210:intron 35.0%
ACACACAACAAAATGAGCAA+TGG - chr5_4:25856419-25856438 None:intergenic 35.0%
CAATTTCGTCTTCGTTATCA+CGG - chr5_4:25856479-25856498 None:intergenic 35.0%
AACGAAGACGAAATTGATGA+TGG + chr5_4:25856483-25856502 Msa0846210:CDS 35.0%
TAGAATGAACATGGACATGT+GGG + chr5_4:25856627-25856646 Msa0846210:three_prime_UTR 35.0%
ACTTGCAGTTTACTGATAAG+TGG + chr5_4:25856654-25856673 Msa0846210:three_prime_UTR 35.0%
CTTGCAGTTTACTGATAAGT+GGG + chr5_4:25856655-25856674 Msa0846210:three_prime_UTR 35.0%
TATTGTAGCCGCTCTTTAAT+TGG + chr5_4:25856751-25856770 Msa0846210:three_prime_UTR 35.0%
! CTGTTGTTATACCCTCATTT+TGG + chr5_4:25856823-25856842 Msa0846210:three_prime_UTR 35.0%
!!! GTTTTTTTCAGCTGGTTCGA+TGG - chr5_4:25855196-25855215 None:intergenic 40.0%
!!! CTGCTGAAGTTTTTTTCAGC+TGG - chr5_4:25855204-25855223 None:intergenic 40.0%
GTACCTGGAGACAATAACAA+TGG - chr5_4:25855492-25855511 None:intergenic 40.0%
TCCGAAATTCATTACGATGC+AGG - chr5_4:25855514-25855533 None:intergenic 40.0%
! GGATAATCTGAAACTCATGC+CGG - chr5_4:25855571-25855590 None:intergenic 40.0%
ACTCTGTCTGAGTGAAAGAA+CGG - chr5_4:25855919-25855938 None:intergenic 40.0%
! AGCATGTTAGGAAGCACATT+AGG - chr5_4:25855984-25856003 None:intergenic 40.0%
AATGTGCTTCCTAACATGCT+TGG + chr5_4:25855984-25856003 Msa0846210:intron 40.0%
TTCCTAACATGCTTGGTCTA+TGG + chr5_4:25855991-25856010 Msa0846210:intron 40.0%
AAAAAGGCAAGGGATCTCTA+CGG - chr5_4:25856076-25856095 None:intergenic 40.0%
CTGTTGAACCAAAAAGGCAA+GGG - chr5_4:25856086-25856105 None:intergenic 40.0%
ACTGTTGAACCAAAAAGGCA+AGG - chr5_4:25856087-25856106 None:intergenic 40.0%
! CTCTAACAAACAAGAGTGCA+TGG + chr5_4:25856245-25856264 Msa0846210:intron 40.0%
! CTAACAAACAAGAGTGCATG+GGG + chr5_4:25856247-25856266 Msa0846210:intron 40.0%
AACACTTGTTCCAGTGTCAT+GGG - chr5_4:25856450-25856469 None:intergenic 40.0%
TAACACTTGTTCCAGTGTCA+TGG - chr5_4:25856451-25856470 None:intergenic 40.0%
TTGCTAACCTGGAAGATAGA+AGG + chr5_4:25856508-25856527 Msa0846210:CDS 40.0%
TGCTAACCTGGAAGATAGAA+GGG + chr5_4:25856509-25856528 Msa0846210:CDS 40.0%
GTAGAATGAACATGGACATG+TGG + chr5_4:25856626-25856645 Msa0846210:three_prime_UTR 40.0%
CTACCACTCCAATTAAAGAG+CGG - chr5_4:25856762-25856781 None:intergenic 40.0%
!!! GTTTTTTTCAGCTGGTTCGA+TGG - chr5_4:25855196-25855215 None:intergenic 40.0%
!!! CTGCTGAAGTTTTTTTCAGC+TGG - chr5_4:25855204-25855223 None:intergenic 40.0%
GTACCTGGAGACAATAACAA+TGG - chr5_4:25855492-25855511 None:intergenic 40.0%
TCCGAAATTCATTACGATGC+AGG - chr5_4:25855514-25855533 None:intergenic 40.0%
! GGATAATCTGAAACTCATGC+CGG - chr5_4:25855571-25855590 None:intergenic 40.0%
ACTCTGTCTGAGTGAAAGAA+CGG - chr5_4:25855919-25855938 None:intergenic 40.0%
! AGCATGTTAGGAAGCACATT+AGG - chr5_4:25855984-25856003 None:intergenic 40.0%
AATGTGCTTCCTAACATGCT+TGG + chr5_4:25855984-25856003 Msa0846210:intron 40.0%
TTCCTAACATGCTTGGTCTA+TGG + chr5_4:25855991-25856010 Msa0846210:intron 40.0%
AAAAAGGCAAGGGATCTCTA+CGG - chr5_4:25856076-25856095 None:intergenic 40.0%
CTGTTGAACCAAAAAGGCAA+GGG - chr5_4:25856086-25856105 None:intergenic 40.0%
ACTGTTGAACCAAAAAGGCA+AGG - chr5_4:25856087-25856106 None:intergenic 40.0%
! CTCTAACAAACAAGAGTGCA+TGG + chr5_4:25856245-25856264 Msa0846210:intron 40.0%
! CTAACAAACAAGAGTGCATG+GGG + chr5_4:25856247-25856266 Msa0846210:intron 40.0%
AACACTTGTTCCAGTGTCAT+GGG - chr5_4:25856450-25856469 None:intergenic 40.0%
TAACACTTGTTCCAGTGTCA+TGG - chr5_4:25856451-25856470 None:intergenic 40.0%
TTGCTAACCTGGAAGATAGA+AGG + chr5_4:25856508-25856527 Msa0846210:CDS 40.0%
TGCTAACCTGGAAGATAGAA+GGG + chr5_4:25856509-25856528 Msa0846210:CDS 40.0%
GTAGAATGAACATGGACATG+TGG + chr5_4:25856626-25856645 Msa0846210:three_prime_UTR 40.0%
CTACCACTCCAATTAAAGAG+CGG - chr5_4:25856762-25856781 None:intergenic 40.0%
TAAGAACAGAGAGGGTGAGA+AGG + chr5_4:25855233-25855252 Msa0846210:five_prime_UTR 45.0%
! AGAGGGTGAGAAGGTTCTAA+AGG + chr5_4:25855242-25855261 Msa0846210:five_prime_UTR 45.0%
!! GAGGGTGAGAAGGTTCTAAA+GGG + chr5_4:25855243-25855262 Msa0846210:five_prime_UTR 45.0%
!! AGGGTGAGAAGGTTCTAAAG+GGG + chr5_4:25855244-25855263 Msa0846210:five_prime_UTR 45.0%
! ATGGATTTGGTTGCTGCATC+AGG - chr5_4:25855299-25855318 None:intergenic 45.0%
TTCATTACGATGCAGGTACC+TGG - chr5_4:25855507-25855526 None:intergenic 45.0%
CATAGAGCCTTTACATGTGC+CGG + chr5_4:25855549-25855568 Msa0846210:intron 45.0%
CCTGAAGACGGTTATTACGA+TGG - chr5_4:25855592-25855611 None:intergenic 45.0%
CCATCGTAATAACCGTCTTC+AGG + chr5_4:25855589-25855608 Msa0846210:CDS 45.0%
CTTTCACTCAGACAGAGTTC+AGG + chr5_4:25855921-25855940 Msa0846210:intron 45.0%
GTCCATAGACCAAGCATGTT+AGG - chr5_4:25855996-25856015 None:intergenic 45.0%
! GTAGAGATCCCTTGCCTTTT+TGG + chr5_4:25856075-25856094 Msa0846210:intron 45.0%
!! TGATGATGGAGTTGCTAACC+TGG + chr5_4:25856497-25856516 Msa0846210:CDS 45.0%
AGCTTACCCTTCTATCTTCC+AGG - chr5_4:25856518-25856537 None:intergenic 45.0%
CAGTTTACTGATAAGTGGGC+AGG + chr5_4:25856659-25856678 Msa0846210:three_prime_UTR 45.0%
TAGCCGCTCTTTAATTGGAG+TGG + chr5_4:25856756-25856775 Msa0846210:three_prime_UTR 45.0%
CGCTCTTTAATTGGAGTGGT+AGG + chr5_4:25856760-25856779 Msa0846210:three_prime_UTR 45.0%
TTGGAGTGGTAGGCACAAAT+TGG + chr5_4:25856770-25856789 Msa0846210:three_prime_UTR 45.0%
TAAGAACAGAGAGGGTGAGA+AGG + chr5_4:25855233-25855252 Msa0846210:five_prime_UTR 45.0%
! AGAGGGTGAGAAGGTTCTAA+AGG + chr5_4:25855242-25855261 Msa0846210:five_prime_UTR 45.0%
!! GAGGGTGAGAAGGTTCTAAA+GGG + chr5_4:25855243-25855262 Msa0846210:five_prime_UTR 45.0%
!! AGGGTGAGAAGGTTCTAAAG+GGG + chr5_4:25855244-25855263 Msa0846210:five_prime_UTR 45.0%
! ATGGATTTGGTTGCTGCATC+AGG - chr5_4:25855299-25855318 None:intergenic 45.0%
TTCATTACGATGCAGGTACC+TGG - chr5_4:25855507-25855526 None:intergenic 45.0%
CATAGAGCCTTTACATGTGC+CGG + chr5_4:25855549-25855568 Msa0846210:intron 45.0%
CCTGAAGACGGTTATTACGA+TGG - chr5_4:25855592-25855611 None:intergenic 45.0%
CCATCGTAATAACCGTCTTC+AGG + chr5_4:25855589-25855608 Msa0846210:CDS 45.0%
CTTTCACTCAGACAGAGTTC+AGG + chr5_4:25855921-25855940 Msa0846210:intron 45.0%
GTCCATAGACCAAGCATGTT+AGG - chr5_4:25855996-25856015 None:intergenic 45.0%
! GTAGAGATCCCTTGCCTTTT+TGG + chr5_4:25856075-25856094 Msa0846210:intron 45.0%
!! TGATGATGGAGTTGCTAACC+TGG + chr5_4:25856497-25856516 Msa0846210:CDS 45.0%
AGCTTACCCTTCTATCTTCC+AGG - chr5_4:25856518-25856537 None:intergenic 45.0%
CAGTTTACTGATAAGTGGGC+AGG + chr5_4:25856659-25856678 Msa0846210:three_prime_UTR 45.0%
TAGCCGCTCTTTAATTGGAG+TGG + chr5_4:25856756-25856775 Msa0846210:three_prime_UTR 45.0%
CGCTCTTTAATTGGAGTGGT+AGG + chr5_4:25856760-25856779 Msa0846210:three_prime_UTR 45.0%
TTGGAGTGGTAGGCACAAAT+TGG + chr5_4:25856770-25856789 Msa0846210:three_prime_UTR 45.0%
ACTCATGCCGGCACATGTAA+AGG - chr5_4:25855559-25855578 None:intergenic 50.0%
! CTTCTGCAGAAGCATACGAC+TGG - chr5_4:25855893-25855912 None:intergenic 50.0%
GTCGTATGCTTCTGCAGAAG+AGG + chr5_4:25855893-25855912 Msa0846210:intron 50.0%
! GTTGATGAAGCCCATGACAC+TGG + chr5_4:25856437-25856456 Msa0846210:intron 50.0%
ACTCATGCCGGCACATGTAA+AGG - chr5_4:25855559-25855578 None:intergenic 50.0%
! CTTCTGCAGAAGCATACGAC+TGG - chr5_4:25855893-25855912 None:intergenic 50.0%
GTCGTATGCTTCTGCAGAAG+AGG + chr5_4:25855893-25855912 Msa0846210:intron 50.0%
! GTTGATGAAGCCCATGACAC+TGG + chr5_4:25856437-25856456 Msa0846210:intron 50.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 25855187 25856888 25855187 ID=Msa0846210;Name=Msa0846210
chr5_4 mRNA 25855187 25856888 25855187 ID=Msa0846210-mRNA-1;Parent=Msa0846210;Name=Msa0846210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=133|0.33|0.5|1|0|0.5|4|286|108
chr5_4 exon 25855187 25855327 25855187 ID=Msa0846210-mRNA-1:exon:10221;Parent=Msa0846210-mRNA-1
chr5_4 exon 25855402 25855507 25855402 ID=Msa0846210-mRNA-1:exon:10222;Parent=Msa0846210-mRNA-1
chr5_4 exon 25855554 25855610 25855554 ID=Msa0846210-mRNA-1:exon:10223;Parent=Msa0846210-mRNA-1
chr5_4 exon 25856447 25856888 25856447 ID=Msa0846210-mRNA-1:exon:10224;Parent=Msa0846210-mRNA-1
chr5_4 five_prime_UTR 25855187 25855319 25855187 ID=Msa0846210-mRNA-1:five_prime_utr;Parent=Msa0846210-mRNA-1
chr5_4 CDS 25855320 25855327 25855320 ID=Msa0846210-mRNA-1:cds;Parent=Msa0846210-mRNA-1
chr5_4 CDS 25855402 25855507 25855402 ID=Msa0846210-mRNA-1:cds;Parent=Msa0846210-mRNA-1
chr5_4 CDS 25855554 25855610 25855554 ID=Msa0846210-mRNA-1:cds;Parent=Msa0846210-mRNA-1
chr5_4 CDS 25856447 25856602 25856447 ID=Msa0846210-mRNA-1:cds;Parent=Msa0846210-mRNA-1
chr5_4 three_prime_UTR 25856603 25856888 25856603 ID=Msa0846210-mRNA-1:three_prime_utr;Parent=Msa0846210-mRNA-1
Gene Sequence

>Msa0846210

ATGATTCGACCCCAATATGAAAATCTCAAATTTCTCAAACCCATATCACATCGTCTTCTGTTTGATTTGATCTTTAGTGGTGGGATTCAACTTTTCCATTGTTATTGTCTCCAGAGCCTTTACATGTGCCGGCATGAGTTTCAGATTATCCATCGTAATAACCGTCTTCAGCCCATGACACTGGAACAAGTGTTATCAAACCGTGATAACGAAGACGAAATTGATGATGGAGTTGCTAACCTGGAAGATAGAAGGGTAAGCTTAAATATATTTCAAATTCTGTTTTTCTTCTTTGGCTTATTTCAAAATAATGCATTTAGATTTTAG

Protein sequence

>Msa0846210

MIRPQYENLKFLKPISHRLLFDLIFSGGIQLFHCYCLQSLYMCRHEFQIIHRNNRLQPMTLEQVLSNRDNEDEIDDGVANLEDRRVSLNIFQILFFFFGLFQNNAFRF*