Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944060 | XP_013451526.1 | 86.093 | 151 | 8 | 2 | 5 | 143 | 3 | 152 | 2.06e-85 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944060 | A0A072U710 | 86.093 | 151 | 8 | 2 | 5 | 143 | 3 | 152 | 9.82e-86 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0820850 | Msa0944060 | 0.801926 | 7.149089e-49 | -8.615850e-47 |
| Msa0849030 | Msa0944060 | 0.800112 | 1.679017e-48 | -8.615850e-47 |
| Msa0944060 | Msa1005990 | 0.802262 | 6.098862e-49 | -8.615850e-47 |
| Msa0944060 | Msa1135470 | 0.807247 | 5.547415e-50 | -8.615850e-47 |
| Msa0944060 | Msa1411020 | 0.805793 | 1.124693e-49 | -8.615850e-47 |
| Msa0944060 | Msa1423390 | 0.803086 | 4.123672e-49 | -8.615850e-47 |
| Msa0944060 | Msa1440810 | 0.805101 | 1.570757e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944060 | MtrunA17_Chr6g0460851 | 86.093 | 151 | 8 | 2 | 5 | 143 | 3 | 152 | 1.89e-89 | 256 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944060 | AT5G37480.2 | 38.667 | 150 | 70 | 3 | 7 | 137 | 3 | 149 | 1.48e-24 | 92.8 |
| Msa0944060 | AT5G37480.1 | 38.667 | 150 | 70 | 3 | 7 | 137 | 3 | 149 | 1.48e-24 | 92.8 |
Find 37 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATATATGCTGAGCTTATT+TGG | 0.111806 | 6_3:-20457524 | None:intergenic |
| ACTTTCTTTCTCCAGGTTTC+AGG | 0.139796 | 6_3:+20457480 | Msa0944060:intron |
| AATGCTATTCTTTCCAATTT+TGG | 0.150906 | 6_3:+20455007 | Msa0944060:CDS |
| CTTCCAATTATGACCAAAAT+TGG | 0.151572 | 6_3:-20455020 | None:intergenic |
| TAACTAATGATTTGAATAAA+TGG | 0.190857 | 6_3:+20457675 | Msa0944060:three_prime_UTR |
| GAACGGTTCCTTTGAGTTTC+CGG | 0.225156 | 6_3:-20454916 | None:intergenic |
| GAAGAAGAGACAATTGCTTT+TGG | 0.285329 | 6_3:+20454980 | Msa0944060:CDS |
| GCAAATCCCGCATCGGTTCC+AGG | 0.358410 | 6_3:-20454878 | None:intergenic |
| AGCGAACCGGAGTGTCTTGC+CGG | 0.391572 | 6_3:-20454855 | None:intergenic |
| TATGCTGAGCTTATTTGGTT+AGG | 0.400185 | 6_3:-20457519 | None:intergenic |
| TTGCGGTGGCTCTGATAAAC+CGG | 0.436816 | 6_3:+20454897 | Msa0944060:CDS |
| TTCGCTCCTGGAACCGATGC+GGG | 0.451336 | 6_3:+20454872 | Msa0944060:CDS |
| TGGAACCGATGCGGGATTTG+CGG | 0.453080 | 6_3:+20454880 | Msa0944060:CDS |
| AAGACACTCCGGTTCGCTCC+TGG | 0.453739 | 6_3:+20454860 | Msa0944060:CDS |
| CATCGGTTCCAGGAGCGAAC+CGG | 0.470806 | 6_3:-20454868 | None:intergenic |
| GAAAATAAACTTACATGTCT+TGG | 0.474323 | 6_3:-20457320 | None:intergenic |
| ATATTCTATTATAAAACAAA+AGG | 0.481045 | 6_3:-20457712 | None:intergenic |
| TCTTCTTCTTCTTCAGCCAT+CGG | 0.487004 | 6_3:-20454794 | None:intergenic |
| AAATTGGAAAGAATAGCATT+TGG | 0.489837 | 6_3:-20455004 | None:intergenic |
| TGTCTTGCCGGAGGTTCTGC+AGG | 0.499340 | 6_3:-20454843 | None:intergenic |
| CACATAGAAGCTGTAAAAGA+TGG | 0.503003 | 6_3:+20454950 | Msa0944060:CDS |
| TTTGCAGAAGAACAGAGAAA+AGG | 0.505753 | 6_3:+20457281 | Msa0944060:intron |
| ACTCAAAGGAACCGTTCCAT+TGG | 0.522310 | 6_3:+20454922 | Msa0944060:CDS |
| TTCTTTCTCCAGGTTTCAGG+TGG | 0.525073 | 6_3:+20457483 | Msa0944060:intron |
| GAGGTTACCTGCAGAACCTC+CGG | 0.547107 | 6_3:+20454836 | Msa0944060:CDS |
| GCTTCTATGTGAGTTGCCAA+TGG | 0.562430 | 6_3:-20454938 | None:intergenic |
| CTGATAAACCGGAAACTCAA+AGG | 0.566977 | 6_3:+20454908 | Msa0944060:CDS |
| AGGTTCTGCAGGTAACCTCT+AGG | 0.573459 | 6_3:-20454832 | None:intergenic |
| GAACCTCCGGCAAGACACTC+CGG | 0.589186 | 6_3:+20454849 | Msa0944060:CDS |
| AACCGATGCGGGATTTGCGG+TGG | 0.595507 | 6_3:+20454883 | Msa0944060:CDS |
| GTTCGCTCCTGGAACCGATG+CGG | 0.603480 | 6_3:+20454871 | Msa0944060:CDS |
| CAGGTAACCTCTAGGAATTG+TGG | 0.620742 | 6_3:-20454824 | None:intergenic |
| AGAAGAACAGAGAAAAGGAA+TGG | 0.622539 | 6_3:+20457286 | Msa0944060:intron |
| TATGTGAGTTGCCAATGGAA+CGG | 0.630313 | 6_3:-20454933 | None:intergenic |
| GAACCGGAGTGTCTTGCCGG+AGG | 0.630649 | 6_3:-20454852 | None:intergenic |
| AGCCACCGCAAATCCCGCAT+CGG | 0.636824 | 6_3:-20454885 | None:intergenic |
| AGACTCGCCACAATTCCTAG+AGG | 0.729996 | 6_3:+20454817 | Msa0944060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTATTATAAAACAAA+AGG | - | chr6_3:20457715-20457734 | None:intergenic | 10.0% |
| !! | AAACTCAAAATAATTGATAA+TGG | - | chr6_3:20455089-20455108 | None:intergenic | 15.0% |
| !! | AAAAAGTAAAAGTAAAAGAA+AGG | - | chr6_3:20455127-20455146 | None:intergenic | 15.0% |
| !! | CTAAGTTAAAACAATATAAA+AGG | - | chr6_3:20457432-20457451 | None:intergenic | 15.0% |
| !!! | CTTTTATATTGTTTTAACTT+AGG | + | chr6_3:20457430-20457449 | Msa0944060:intron | 15.0% |
| !!! | TTTATTTTGATTTTTGTACT+AGG | + | chr6_3:20457564-20457583 | Msa0944060:CDS | 15.0% |
| !! | TAACTAATGATTTGAATAAA+TGG | + | chr6_3:20457675-20457694 | Msa0944060:three_prime_UTR | 15.0% |
| !!! | AAAATAATTGATAATGGATG+AGG | - | chr6_3:20455083-20455102 | None:intergenic | 20.0% |
| !!! | TATTATATTTTAGACTAGTG+TGG | + | chr6_3:20455281-20455300 | Msa0944060:intron | 20.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | + | chr6_3:20455593-20455612 | Msa0944060:intron | 20.0% |
| !! | TGAATCAAATTACTTCATAA+TGG | - | chr6_3:20455667-20455686 | None:intergenic | 20.0% |
| !!! | TTTGTTGTTGTTGATTAATT+AGG | + | chr6_3:20455720-20455739 | Msa0944060:intron | 20.0% |
| !! | GAAGAAAAATATATTGTGAT+GGG | + | chr6_3:20456277-20456296 | Msa0944060:intron | 20.0% |
| !! | ATCAATGAATAATGTGATTT+AGG | + | chr6_3:20456953-20456972 | Msa0944060:intron | 20.0% |
| !! | ATTTCTCAATTATTCGAAAA+TGG | - | chr6_3:20457249-20457268 | None:intergenic | 20.0% |
| !! | GAAAGAAAGTAAACAAATAA+AGG | - | chr6_3:20457470-20457489 | None:intergenic | 20.0% |
| ! | AAATTGGAAAGAATAGCATT+TGG | - | chr6_3:20455007-20455026 | None:intergenic | 25.0% |
| !! | AATGCTATTCTTTCCAATTT+TGG | + | chr6_3:20455007-20455026 | Msa0944060:CDS | 25.0% |
| !!! | TTTCCAATTTTGGTCATAAT+TGG | + | chr6_3:20455017-20455036 | Msa0944060:intron | 25.0% |
| !! | GACATGTAGATTTTATAGTA+AGG | + | chr6_3:20455515-20455534 | Msa0944060:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | - | chr6_3:20455589-20455608 | None:intergenic | 25.0% |
| ! | AGATTTAGAGATTTATGAGT+TGG | + | chr6_3:20455618-20455637 | Msa0944060:intron | 25.0% |
| ! | TTCATTCTCATGCTATAATT+AGG | + | chr6_3:20455758-20455777 | Msa0944060:intron | 25.0% |
| ! | GGATGTTAGAATATGAAAAT+TGG | - | chr6_3:20455858-20455877 | None:intergenic | 25.0% |
| ! | TTAACATTAGTATGGACAAA+GGG | - | chr6_3:20456101-20456120 | None:intergenic | 25.0% |
| ! | TTTAACATTAGTATGGACAA+AGG | - | chr6_3:20456102-20456121 | None:intergenic | 25.0% |
| ! | GTCCATACTAATGTTAAATT+TGG | + | chr6_3:20456104-20456123 | Msa0944060:intron | 25.0% |
| ! | CACCAAATTTAACATTAGTA+TGG | - | chr6_3:20456109-20456128 | None:intergenic | 25.0% |
| ! | CATACTAATGTTAAATTTGG+TGG | + | chr6_3:20456107-20456126 | Msa0944060:intron | 25.0% |
| !!! | AATGTTAAATTTGGTGGTTT+TGG | + | chr6_3:20456113-20456132 | Msa0944060:intron | 25.0% |
| ! | CGAAGAAAAATATATTGTGA+TGG | + | chr6_3:20456276-20456295 | Msa0944060:intron | 25.0% |
| ! | GCTATAAGTCAAATAATTGA+GGG | + | chr6_3:20456975-20456994 | Msa0944060:intron | 25.0% |
| ! | GAAAATAAACTTACATGTCT+TGG | - | chr6_3:20457323-20457342 | None:intergenic | 25.0% |
| ! | TTAACAAAAACTATCAACTG+AGG | - | chr6_3:20457621-20457640 | None:intergenic | 25.0% |
| CTTCCAATTATGACCAAAAT+TGG | - | chr6_3:20455023-20455042 | None:intergenic | 30.0% | |
| !! | CTTCAAACTGTTATTTCTTC+TGG | + | chr6_3:20455043-20455062 | Msa0944060:intron | 30.0% |
| !! | TATTTTAGACTAGTGTGGAA+TGG | + | chr6_3:20455286-20455305 | Msa0944060:intron | 30.0% |
| !! | TAGAAAAGATGGTGGAAAAT+AGG | + | chr6_3:20455465-20455484 | Msa0944060:intron | 30.0% |
| ! | TAACTTTTGTACCCATTCTA+TGG | - | chr6_3:20455820-20455839 | None:intergenic | 30.0% |
| !! | AGTTTGTTGTAATTGGAGAT+AGG | - | chr6_3:20455879-20455898 | None:intergenic | 30.0% |
| GCAAATGCTTACTAATCATA+GGG | - | chr6_3:20455965-20455984 | None:intergenic | 30.0% | |
| TGCAAATGCTTACTAATCAT+AGG | - | chr6_3:20455966-20455985 | None:intergenic | 30.0% | |
| TATGATTAGTAAGCATTTGC+AGG | + | chr6_3:20455965-20455984 | Msa0944060:intron | 30.0% | |
| ATAGAATCAACAACATTGTG+TGG | - | chr6_3:20456050-20456069 | None:intergenic | 30.0% | |
| CTCTTATTCACAACTACTTA+AGG | - | chr6_3:20456164-20456183 | None:intergenic | 30.0% | |
| TTGAAAATCATACAAGCCAA+AGG | - | chr6_3:20456189-20456208 | None:intergenic | 30.0% | |
| !!! | TGTGATGGGTTTATTTTCAT+TGG | + | chr6_3:20456291-20456310 | Msa0944060:intron | 30.0% |
| ! | ATTTTCATTGGACTCACTAT+AGG | + | chr6_3:20456303-20456322 | Msa0944060:intron | 30.0% |
| AGATAAATCCAATGTGAAAG+AGG | + | chr6_3:20456339-20456358 | Msa0944060:intron | 30.0% | |
| ! | GAGGTTGTATGTTATTTACA+TGG | + | chr6_3:20456908-20456927 | Msa0944060:intron | 30.0% |
| GGCTATAAGTCAAATAATTG+AGG | + | chr6_3:20456974-20456993 | Msa0944060:intron | 30.0% | |
| TTGACTCAAATCTAACGTTA+AGG | + | chr6_3:20457019-20457038 | Msa0944060:intron | 30.0% | |
| TGACTCAAATCTAACGTTAA+GGG | + | chr6_3:20457020-20457039 | Msa0944060:intron | 30.0% | |
| TAAAACTATATACACACGAG+CGG | - | chr6_3:20457082-20457101 | None:intergenic | 30.0% | |
| AACAAAAACACTAGAAGTGA+TGG | - | chr6_3:20457389-20457408 | None:intergenic | 30.0% | |
| TTTGTTTACTTTCTTTCTCC+AGG | + | chr6_3:20457473-20457492 | Msa0944060:intron | 30.0% | |
| CAATATATGCTGAGCTTATT+TGG | - | chr6_3:20457527-20457546 | None:intergenic | 30.0% | |
| CACATAGAAGCTGTAAAAGA+TGG | + | chr6_3:20454950-20454969 | Msa0944060:CDS | 35.0% | |
| ! | GAAGAAGAGACAATTGCTTT+TGG | + | chr6_3:20454980-20454999 | Msa0944060:CDS | 35.0% |
| ATGATGTTGTGTTGGATGTA+TGG | + | chr6_3:20455376-20455395 | Msa0944060:intron | 35.0% | |
| ATGTATGGTAAGACTAGACA+GGG | + | chr6_3:20455391-20455410 | Msa0944060:intron | 35.0% | |
| CAACATTAGAGAGATAGTTG+AGG | + | chr6_3:20455430-20455449 | Msa0944060:intron | 35.0% | |
| AGCACTTGTAGTAGAAAAGA+TGG | + | chr6_3:20455454-20455473 | Msa0944060:intron | 35.0% | |
| ACTTGTAGTAGAAAAGATGG+TGG | + | chr6_3:20455457-20455476 | Msa0944060:intron | 35.0% | |
| TACAAGCAAGTTTATTCAGC+CGG | + | chr6_3:20455786-20455805 | Msa0944060:intron | 35.0% | |
| TGGGTACAAAAGTTAGTTAG+AGG | + | chr6_3:20455825-20455844 | Msa0944060:intron | 35.0% | |
| TCTCCAATTACAACAAACTG+TGG | + | chr6_3:20455880-20455899 | Msa0944060:intron | 35.0% | |
| !! | TGACCACAGTTTGTTGTAAT+TGG | - | chr6_3:20455886-20455905 | None:intergenic | 35.0% |
| AGACACAGTTTGACTATTAG+CGG | + | chr6_3:20455918-20455937 | Msa0944060:intron | 35.0% | |
| ATTAGTAAGCATTTGCAGGT+AGG | + | chr6_3:20455969-20455988 | Msa0944060:intron | 35.0% | |
| !!! | GTTAAATTTGGTGGTTTTGG+TGG | + | chr6_3:20456116-20456135 | Msa0944060:intron | 35.0% |
| GTTGTGAATAAGAGATCCTT+TGG | + | chr6_3:20456170-20456189 | Msa0944060:intron | 35.0% | |
| TTCAACGTCTGATGTAACTA+TGG | + | chr6_3:20456204-20456223 | Msa0944060:intron | 35.0% | |
| AAAGAAGAAACGGGTGAAAA+TGG | + | chr6_3:20456631-20456650 | Msa0944060:intron | 35.0% | |
| ! | ATCACTAGGTTTTTCGTGTT+GGG | - | chr6_3:20456708-20456727 | None:intergenic | 35.0% |
| !! | AGAATTACTTTTCGCAGTCA+AGG | - | chr6_3:20456749-20456768 | None:intergenic | 35.0% |
| TTGACTGCGAAAAGTAATTC+TGG | + | chr6_3:20456748-20456767 | Msa0944060:intron | 35.0% | |
| TCTCAACTACACTAACAACA+AGG | + | chr6_3:20456822-20456841 | Msa0944060:intron | 35.0% | |
| CTCAACTACACTAACAACAA+GGG | + | chr6_3:20456823-20456842 | Msa0944060:intron | 35.0% | |
| TCAACTACACTAACAACAAG+GGG | + | chr6_3:20456824-20456843 | Msa0944060:intron | 35.0% | |
| AAAACTATATACACACGAGC+GGG | - | chr6_3:20457081-20457100 | None:intergenic | 35.0% | |
| TCGAAAATGGCTCTTAACAT+TGG | - | chr6_3:20457236-20457255 | None:intergenic | 35.0% | |
| TTTGCAGAAGAACAGAGAAA+AGG | + | chr6_3:20457281-20457300 | Msa0944060:intron | 35.0% | |
| AGAAGAACAGAGAAAAGGAA+TGG | + | chr6_3:20457286-20457305 | Msa0944060:intron | 35.0% | |
| TATGCTGAGCTTATTTGGTT+AGG | - | chr6_3:20457522-20457541 | None:intergenic | 35.0% | |
| CTGATAAACCGGAAACTCAA+AGG | + | chr6_3:20454908-20454927 | Msa0944060:CDS | 40.0% | |
| TATGTGAGTTGCCAATGGAA+CGG | - | chr6_3:20454936-20454955 | None:intergenic | 40.0% | |
| CGCTTACTTTATTCTCGTGT+TGG | - | chr6_3:20455345-20455364 | None:intergenic | 40.0% | |
| CGAGAATAAAGTAAGCGTAG+CGG | + | chr6_3:20455348-20455367 | Msa0944060:intron | 40.0% | |
| GATGTATGGTAAGACTAGAC+AGG | + | chr6_3:20455390-20455409 | Msa0944060:intron | 40.0% | |
| AAGCATAGTCAGATTGCAAG+AGG | + | chr6_3:20455553-20455572 | Msa0944060:intron | 40.0% | |
| ! | AAGTCTTATCCCACCAAGTA+AGG | - | chr6_3:20455699-20455718 | None:intergenic | 40.0% |
| ACAAGCAAGTTTATTCAGCC+GGG | + | chr6_3:20455787-20455806 | Msa0944060:intron | 40.0% | |
| TACTAATCATAGGGCCAAGT+TGG | - | chr6_3:20455956-20455975 | None:intergenic | 40.0% | |
| AGTATGTGTGCAGAGAATTG+TGG | - | chr6_3:20456019-20456038 | None:intergenic | 40.0% | |
| GTAACTATGGTCCCTACTAA+CGG | + | chr6_3:20456217-20456236 | Msa0944060:intron | 40.0% | |
| ATTGGACTCACTATAGGAAG+AGG | + | chr6_3:20456309-20456328 | Msa0944060:intron | 40.0% | |
| GTGAGGAAGGAAAGAAGAAA+CGG | + | chr6_3:20456621-20456640 | Msa0944060:intron | 40.0% | |
| TGAGGAAGGAAAGAAGAAAC+GGG | + | chr6_3:20456622-20456641 | Msa0944060:intron | 40.0% | |
| !! | TTGTAGGGCCTTGTTGAAAT+GGG | - | chr6_3:20456676-20456695 | None:intergenic | 40.0% |
| !! | TTTGTAGGGCCTTGTTGAAA+TGG | - | chr6_3:20456677-20456696 | None:intergenic | 40.0% |
| TTCAACAAGGCCCTACAAAA+TGG | + | chr6_3:20456678-20456697 | Msa0944060:intron | 40.0% | |
| ! | GATCACTAGGTTTTTCGTGT+TGG | - | chr6_3:20456709-20456728 | None:intergenic | 40.0% |
| TACACTAACAACAAGGGGAT+TGG | + | chr6_3:20456829-20456848 | Msa0944060:intron | 40.0% | |
| TAACAACAAGGGGATTGGAA+TGG | + | chr6_3:20456834-20456853 | Msa0944060:intron | 40.0% | |
| TATACGCCACAAATCCTACT+AGG | + | chr6_3:20456860-20456879 | Msa0944060:intron | 40.0% | |
| ATACGCCACAAATCCTACTA+GGG | + | chr6_3:20456861-20456880 | Msa0944060:intron | 40.0% | |
| TTTCACCCTAGTAGGATTTG+TGG | - | chr6_3:20456869-20456888 | None:intergenic | 40.0% | |
| GTGATGGCATTCATGCAAAA+GGG | - | chr6_3:20457373-20457392 | None:intergenic | 40.0% | |
| AGTGATGGCATTCATGCAAA+AGG | - | chr6_3:20457374-20457393 | None:intergenic | 40.0% | |
| ACTTTCTTTCTCCAGGTTTC+AGG | + | chr6_3:20457480-20457499 | Msa0944060:intron | 40.0% | |
| ! | CAGGTAACCTCTAGGAATTG+TGG | - | chr6_3:20454827-20454846 | None:intergenic | 45.0% |
| ! | GAACGGTTCCTTTGAGTTTC+CGG | - | chr6_3:20454919-20454938 | None:intergenic | 45.0% |
| ACTCAAAGGAACCGTTCCAT+TGG | + | chr6_3:20454922-20454941 | Msa0944060:CDS | 45.0% | |
| GCTTCTATGTGAGTTGCCAA+TGG | - | chr6_3:20454941-20454960 | None:intergenic | 45.0% | |
| ! | CGGAGATGATGATGTTGTGT+TGG | + | chr6_3:20455368-20455387 | Msa0944060:intron | 45.0% |
| !! | AAGATGGTGGAAAATAGGCG+TGG | + | chr6_3:20455470-20455489 | Msa0944060:intron | 45.0% |
| !! | AGATGGTGGAAAATAGGCGT+GGG | + | chr6_3:20455471-20455490 | Msa0944060:intron | 45.0% |
| AAAATAGGCGTGGGTGGTTT+GGG | + | chr6_3:20455480-20455499 | Msa0944060:intron | 45.0% | |
| TTCATGTAGCCGACCTTACT+TGG | + | chr6_3:20455683-20455702 | Msa0944060:intron | 45.0% | |
| CTTATCCCACCAAGTAAGGT+CGG | - | chr6_3:20455695-20455714 | None:intergenic | 45.0% | |
| GGTCTTGCAAAAGTCCAACT+TGG | + | chr6_3:20455939-20455958 | Msa0944060:intron | 45.0% | |
| !!! | TGGTGGTTTTGGTGGAGATT+CGG | + | chr6_3:20456124-20456143 | Msa0944060:intron | 45.0% |
| CAAAACAACCGCCGTTAGTA+GGG | - | chr6_3:20456231-20456250 | None:intergenic | 45.0% | |
| !! | CTACTAACGGCGGTTGTTTT+GGG | + | chr6_3:20456230-20456249 | Msa0944060:intron | 45.0% |
| !! | TACTAACGGCGGTTGTTTTG+GGG | + | chr6_3:20456231-20456250 | Msa0944060:intron | 45.0% |
| CCATTAGACCCTGTTCATGT+GGG | - | chr6_3:20456367-20456386 | None:intergenic | 45.0% | |
| CCACATGAACAGGGTCTAAT+GGG | + | chr6_3:20456365-20456384 | Msa0944060:intron | 45.0% | |
| GAGGAGGAGAGAACAGAAAA+TGG | + | chr6_3:20456436-20456455 | Msa0944060:intron | 45.0% | |
| GAGGAGAGAACAGAAAATGG+TGG | + | chr6_3:20456439-20456458 | Msa0944060:intron | 45.0% | |
| AAAGCGGAGAGAAGGTTGAA+TGG | + | chr6_3:20456540-20456559 | Msa0944060:intron | 45.0% | |
| AAGCGGAGAGAAGGTTGAAT+GGG | + | chr6_3:20456541-20456560 | Msa0944060:intron | 45.0% | |
| !! | GAGCATTGATCAGTTTGTCG+TGG | + | chr6_3:20456592-20456611 | Msa0944060:intron | 45.0% |
| GTTTGTCGTGGTACTAAGTG+AGG | + | chr6_3:20456604-20456623 | Msa0944060:intron | 45.0% | |
| TTGTTGAAATGGGTCGGGTT+TGG | - | chr6_3:20456666-20456685 | None:intergenic | 45.0% | |
| AAACCCGACCCATTTCAACA+AGG | + | chr6_3:20456665-20456684 | Msa0944060:intron | 45.0% | |
| GAGTTTCAAGCAGGATCACT+AGG | - | chr6_3:20456722-20456741 | None:intergenic | 45.0% | |
| ATCGCAACACGAATCCATGA+GGG | + | chr6_3:20456784-20456803 | Msa0944060:intron | 45.0% | |
| TGTAGTTGAGATCGAGTGCT+GGG | - | chr6_3:20456813-20456832 | None:intergenic | 45.0% | |
| TTCTTTCTCCAGGTTTCAGG+TGG | + | chr6_3:20457483-20457502 | Msa0944060:intron | 45.0% | |
| ! | TGCTTTTACCACCTGAAACC+TGG | - | chr6_3:20457494-20457513 | None:intergenic | 45.0% |
| AGACTCGCCACAATTCCTAG+AGG | + | chr6_3:20454817-20454836 | Msa0944060:CDS | 50.0% | |
| AGGTTCTGCAGGTAACCTCT+AGG | - | chr6_3:20454835-20454854 | None:intergenic | 50.0% | |
| !! | TTGCGGTGGCTCTGATAAAC+CGG | + | chr6_3:20454897-20454916 | Msa0944060:CDS | 50.0% |
| GAAAATAGGCGTGGGTGGTT+TGG | + | chr6_3:20455479-20455498 | Msa0944060:intron | 50.0% | |
| ATGTAGCCGACCTTACTTGG+TGG | + | chr6_3:20455686-20455705 | Msa0944060:intron | 50.0% | |
| TGTAGCCGACCTTACTTGGT+GGG | + | chr6_3:20455687-20455706 | Msa0944060:intron | 50.0% | |
| !! | CCATTCTATGGCTTGTTGCC+CGG | - | chr6_3:20455808-20455827 | None:intergenic | 50.0% |
| CGGGCAACAAGCCATAGAAT+GGG | + | chr6_3:20455806-20455825 | Msa0944060:intron | 50.0% | |
| !!! | TGGTTTTGGTGGAGATTCGG+TGG | + | chr6_3:20456127-20456146 | Msa0944060:intron | 50.0% |
| !!! | TTTTGGTGGAGATTCGGTGG+AGG | + | chr6_3:20456130-20456149 | Msa0944060:intron | 50.0% |
| !! | TTTGGTGGAGATTCGGTGGA+GGG | + | chr6_3:20456131-20456150 | Msa0944060:intron | 50.0% |
| ACTATGGTCCCTACTAACGG+CGG | + | chr6_3:20456220-20456239 | Msa0944060:intron | 50.0% | |
| CCAAAACAACCGCCGTTAGT+AGG | - | chr6_3:20456232-20456251 | None:intergenic | 50.0% | |
| ! | CCTACTAACGGCGGTTGTTT+TGG | + | chr6_3:20456229-20456248 | Msa0944060:intron | 50.0% |
| !!! | ACTAACGGCGGTTGTTTTGG+GGG | + | chr6_3:20456232-20456251 | Msa0944060:intron | 50.0% |
| TGTGGGCTCCTCTTTCACAT+TGG | - | chr6_3:20456350-20456369 | None:intergenic | 50.0% | |
| AAAGAGGAGCCCACATGAAC+AGG | + | chr6_3:20456355-20456374 | Msa0944060:intron | 50.0% | |
| AAGAGGAGCCCACATGAACA+GGG | + | chr6_3:20456356-20456375 | Msa0944060:intron | 50.0% | |
| CCCACATGAACAGGGTCTAA+TGG | + | chr6_3:20456364-20456383 | Msa0944060:intron | 50.0% | |
| CCCATTAGACCCTGTTCATG+TGG | - | chr6_3:20456368-20456387 | None:intergenic | 50.0% | |
| ! | AGTTGACTTCCTGCGTGACA+GGG | + | chr6_3:20456390-20456409 | Msa0944060:intron | 50.0% |
| ! | TAGCAAGGAGTACGTGGTTC+CGG | + | chr6_3:20456476-20456495 | Msa0944060:intron | 50.0% |
| GCGTTTCTGTCCACAGAAAG+CGG | + | chr6_3:20456524-20456543 | Msa0944060:intron | 50.0% | |
| AACCTTCTCTCCGCTTTCTG+TGG | - | chr6_3:20456537-20456556 | None:intergenic | 50.0% | |
| GTCGTGGTACTAAGTGAGGA+AGG | + | chr6_3:20456608-20456627 | Msa0944060:intron | 50.0% | |
| !! | AGGGCCTTGTTGAAATGGGT+CGG | - | chr6_3:20456672-20456691 | None:intergenic | 50.0% |
| !!! | GTTGGGCTGGCCATTTTGTA+GGG | - | chr6_3:20456691-20456710 | None:intergenic | 50.0% |
| !!! | TGTTGGGCTGGCCATTTTGT+AGG | - | chr6_3:20456692-20456711 | None:intergenic | 50.0% |
| ! | CTAGGTTTTTCGTGTTGGGC+TGG | - | chr6_3:20456704-20456723 | None:intergenic | 50.0% |
| CAAGGTCGAGAGTTTCAAGC+AGG | - | chr6_3:20456731-20456750 | None:intergenic | 50.0% | |
| TTCGTGTTGCGATCAGAGGA+AGG | - | chr6_3:20456777-20456796 | None:intergenic | 50.0% | |
| TGGATTCGTGTTGCGATCAG+AGG | - | chr6_3:20456781-20456800 | None:intergenic | 50.0% | |
| GATCGCAACACGAATCCATG+AGG | + | chr6_3:20456783-20456802 | Msa0944060:intron | 50.0% | |
| GTGTAGTTGAGATCGAGTGC+TGG | - | chr6_3:20456814-20456833 | None:intergenic | 50.0% | |
| TGCTAGGGTTTCACCCTAGT+AGG | - | chr6_3:20456877-20456896 | None:intergenic | 50.0% | |
| GAGGTTACCTGCAGAACCTC+CGG | + | chr6_3:20454836-20454855 | Msa0944060:CDS | 55.0% | |
| TGGAACCGATGCGGGATTTG+CGG | + | chr6_3:20454880-20454899 | Msa0944060:CDS | 55.0% | |
| TGGTGGAAAATAGGCGTGGG+TGG | + | chr6_3:20455474-20455493 | Msa0944060:intron | 55.0% | |
| CCGGGCAACAAGCCATAGAA+TGG | + | chr6_3:20455805-20455824 | Msa0944060:intron | 55.0% | |
| ! | GAGTTGACTTCCTGCGTGAC+AGG | + | chr6_3:20456389-20456408 | Msa0944060:intron | 55.0% |
| !! | TGTGGGGGAAGCTTGTTGCA+GGG | + | chr6_3:20456414-20456433 | Msa0944060:intron | 55.0% |
| GAGAAGCTACCTGCGTAGCA+AGG | + | chr6_3:20456461-20456480 | Msa0944060:intron | 55.0% | |
| ! | CGCAGGGAGTATGGCGATTT+CGG | + | chr6_3:20456502-20456521 | Msa0944060:intron | 55.0% |
| GTCCACAGAAAGCGGAGAGA+AGG | + | chr6_3:20456532-20456551 | Msa0944060:intron | 55.0% | |
| GGTGAGAACGTCGCAATGTG+AGG | + | chr6_3:20456562-20456581 | Msa0944060:intron | 55.0% | |
| !! | GGGCCTTGTTGAAATGGGTC+GGG | - | chr6_3:20456671-20456690 | None:intergenic | 55.0% |
| TGTCTTGCCGGAGGTTCTGC+AGG | - | chr6_3:20454846-20454865 | None:intergenic | 60.0% | |
| GAACCTCCGGCAAGACACTC+CGG | + | chr6_3:20454849-20454868 | Msa0944060:CDS | 60.0% | |
| ! | AGCGAACCGGAGTGTCTTGC+CGG | - | chr6_3:20454858-20454877 | None:intergenic | 60.0% |
| ! | AAGACACTCCGGTTCGCTCC+TGG | + | chr6_3:20454860-20454879 | Msa0944060:CDS | 60.0% |
| !! | CATCGGTTCCAGGAGCGAAC+CGG | - | chr6_3:20454871-20454890 | None:intergenic | 60.0% |
| GTTCGCTCCTGGAACCGATG+CGG | + | chr6_3:20454871-20454890 | Msa0944060:CDS | 60.0% | |
| TTCGCTCCTGGAACCGATGC+GGG | + | chr6_3:20454872-20454891 | Msa0944060:CDS | 60.0% | |
| !! | GCAAATCCCGCATCGGTTCC+AGG | - | chr6_3:20454881-20454900 | None:intergenic | 60.0% |
| AACCGATGCGGGATTTGCGG+TGG | + | chr6_3:20454883-20454902 | Msa0944060:CDS | 60.0% | |
| AGCCACCGCAAATCCCGCAT+CGG | - | chr6_3:20454888-20454907 | None:intergenic | 60.0% | |
| !!! | AACGGCGGTTGTTTTGGGGG+AGG | + | chr6_3:20456235-20456254 | Msa0944060:intron | 60.0% |
| !!! | ACGGCGGTTGTTTTGGGGGA+GGG | + | chr6_3:20456236-20456255 | Msa0944060:intron | 60.0% |
| TTCCTGCGTGACAGGGCTGT+GGG | + | chr6_3:20456397-20456416 | Msa0944060:intron | 60.0% | |
| !! | CTGTGGGGGAAGCTTGTTGC+AGG | + | chr6_3:20456413-20456432 | Msa0944060:intron | 60.0% |
| !! | GGAAGCTTGTTGCAGGGAGG+AGG | + | chr6_3:20456420-20456439 | Msa0944060:intron | 60.0% |
| CCACGTACTCCTTGCTACGC+AGG | - | chr6_3:20456473-20456492 | None:intergenic | 60.0% | |
| ! | CCTGCGTAGCAAGGAGTACG+TGG | + | chr6_3:20456470-20456489 | Msa0944060:intron | 60.0% |
| CCTCTTGCGTCGCTCTGCTA+GGG | - | chr6_3:20456892-20456911 | None:intergenic | 60.0% | |
| ACCTCTTGCGTCGCTCTGCT+AGG | - | chr6_3:20456893-20456912 | None:intergenic | 60.0% | |
| ! | GAACCGGAGTGTCTTGCCGG+AGG | - | chr6_3:20454855-20454874 | None:intergenic | 65.0% |
| CTTCCTGCGTGACAGGGCTG+TGG | + | chr6_3:20456396-20456415 | Msa0944060:intron | 65.0% | |
| TCCTGCGTGACAGGGCTGTG+GGG | + | chr6_3:20456398-20456417 | Msa0944060:intron | 65.0% | |
| !! | GGGGGAAGCTTGTTGCAGGG+AGG | + | chr6_3:20456417-20456436 | Msa0944060:intron | 65.0% |
| TACGTGGTTCCGGCGTCGCA+GGG | + | chr6_3:20456486-20456505 | Msa0944060:intron | 65.0% | |
| TTCCGGCGTCGCAGGGAGTA+TGG | + | chr6_3:20456493-20456512 | Msa0944060:intron | 65.0% | |
| !! | CGAGTGCTGGGTCACCCTCA+TGG | - | chr6_3:20456801-20456820 | None:intergenic | 65.0% |
| CCCTAGCAGAGCGACGCAAG+AGG | + | chr6_3:20456889-20456908 | Msa0944060:intron | 65.0% | |
| CCTGCGTGACAGGGCTGTGG+GGG | + | chr6_3:20456399-20456418 | Msa0944060:intron | 70.0% | |
| GTACGTGGTTCCGGCGTCGC+AGG | + | chr6_3:20456485-20456504 | Msa0944060:intron | 70.0% | |
| CGCCATACTCCCTGCGACGC+CGG | - | chr6_3:20456498-20456517 | None:intergenic | 70.0% | |
| CCCCCACAGCCCTGTCACGC+AGG | - | chr6_3:20456402-20456421 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 20454797 | 20457754 | 20454797 | ID=Msa0944060;Name=Msa0944060 |
| chr6_3 | mRNA | 20454797 | 20457754 | 20454797 | ID=Msa0944060-mRNA-1;Parent=Msa0944060;Name=Msa0944060-mRNA-1;_AED=0.08;_eAED=0.11;_QI=0|0.5|0.66|1|0|0.33|3|101|143 |
| chr6_3 | exon | 20454797 | 20455028 | 20454797 | ID=Msa0944060-mRNA-1:exon:6067;Parent=Msa0944060-mRNA-1 |
| chr6_3 | exon | 20457288 | 20457328 | 20457288 | ID=Msa0944060-mRNA-1:exon:6068;Parent=Msa0944060-mRNA-1 |
| chr6_3 | exon | 20457495 | 20457754 | 20457495 | ID=Msa0944060-mRNA-1:exon:6069;Parent=Msa0944060-mRNA-1 |
| chr6_3 | CDS | 20454797 | 20455028 | 20454797 | ID=Msa0944060-mRNA-1:cds;Parent=Msa0944060-mRNA-1 |
| chr6_3 | CDS | 20457288 | 20457328 | 20457288 | ID=Msa0944060-mRNA-1:cds;Parent=Msa0944060-mRNA-1 |
| chr6_3 | CDS | 20457495 | 20457653 | 20457495 | ID=Msa0944060-mRNA-1:cds;Parent=Msa0944060-mRNA-1 |
| chr6_3 | three_prime_UTR | 20457654 | 20457754 | 20457654 | ID=Msa0944060-mRNA-1:three_prime_utr;Parent=Msa0944060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
