AlfalfaGEDB | Msa1135470

M. sativa cultivar zhongmu-4 / Msa1135470

KEGG: K03671
GO: -
PFAM: PF00085.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135470	ACZ37068.1	95.420	131	6	0	1	131	1	131	1.20e-79	241

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135470	sp\|Q38879\|TRXH2_ARATH	59.398	133	52	1	1	131	1	133	1.08e-55	173

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135470	D8L5D9	95.420	131	6	0	1	131	1	131	5.73e-80	241

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1135470	0.847567	1.065975e-59	-8.615850e-47
Msa0002460	Msa1135470	0.817167	3.794629e-52	-8.615850e-47
Msa0003700	Msa1135470	0.800435	1.443054e-48	-8.615850e-47
Msa0003720	Msa1135470	0.821892	3.170257e-53	-8.615850e-47
Msa0003890	Msa1135470	0.867145	1.698560e-65	-8.615850e-47
Msa0006070	Msa1135470	0.847012	1.513413e-59	-8.615850e-47
Msa0006110	Msa1135470	0.886761	2.581195e-72	-8.615850e-47
Msa0006380	Msa1135470	0.811260	7.651010e-51	-8.615850e-47
Msa0007990	Msa1135470	0.834203	3.432861e-56	-8.615850e-47
Msa0009180	Msa1135470	0.813180	2.916722e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135470	MtrunA17_Chr7g0216481	90.299	134	10	1	1	131	1	134	1.49e-79	230
Msa1135470	MtrunA17_Chr5g0415771	55.385	130	54	1	1	130	1	126	7.21e-41	132
Msa1135470	MtrunA17_Chr5g0415761	56.034	116	51	0	15	130	12	127	6.08e-39	127
Msa1135470	MtrunA17_Chr5g0415741	54.701	117	53	0	14	130	9	125	6.45e-39	127
Msa1135470	MtrunA17_Chr1g0155721	48.214	112	58	0	19	130	2	113	1.35e-38	126
Msa1135470	MtrunA17_Chr3g0142051	46.847	111	59	0	19	129	2	112	9.38e-36	119
Msa1135470	MtrunA17_Chr5g0404831	46.018	113	61	0	19	131	4	116	7.90e-35	117
Msa1135470	MtrunA17_Chr8g0393201	42.574	101	58	0	29	129	233	333	9.66e-27	101
Msa1135470	MtrunA17_Chr7g0245141	38.095	105	65	0	22	126	23	127	1.88e-25	93.6
Msa1135470	MtrunA17_Chr8g0334481	35.238	105	68	0	22	126	25	129	1.58e-24	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135470	AT5G39950.1	59.398	133	52	1	1	131	1	133	1.10e-56	173
Msa1135470	AT1G45145.1	52.475	101	48	0	29	129	11	111	9.20e-36	119
Msa1135470	AT3G51030.1	46.018	113	61	0	19	131	2	114	2.75e-34	115
Msa1135470	AT1G59730.1	42.748	131	71	2	1	130	1	128	6.75e-34	115
Msa1135470	AT1G19730.1	46.429	112	59	1	19	129	2	113	1.97e-33	113
Msa1135470	AT1G69880.1	51.546	97	47	0	33	129	47	143	3.07e-33	114
Msa1135470	AT5G42980.1	47.059	102	54	0	29	130	11	112	2.54e-31	108
Msa1135470	AT3G17880.2	40.000	105	63	0	25	129	265	369	1.01e-25	99.8
Msa1135470	AT3G17880.1	40.000	105	63	0	25	129	272	376	1.24e-25	99.8
Msa1135470	AT3G08710.2	39.062	128	74	2	1	126	1	126	2.19e-24	91.3

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Find 49 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGTTGATAAGGTTGT+TGG	0.418770	7_4:-3125712	Msa1135470:CDS
AATCGATGTTGATGAATTAT+CGG	0.348841	7_4:-3126410	Msa1135470:intron
ACCAATATGATGTTGTTCAT+TGG	0.363484	7_4:-3125524	Msa1135470:three_prime_UTR
ACGTTTGTGTTGTTGAAGAA+TGG	0.456074	7_4:-3125736	Msa1135470:CDS
ACTTTGAGCAGATATGATGT+GGG	0.676948	7_4:+3125250	None:intergenic
AGAAGCAAAATTGATGTATT+TGG	0.184205	7_4:-3125464	Msa1135470:three_prime_UTR
AGACTCCAAAACAGGACAGA+TGG	0.575715	7_4:+3125362	None:intergenic
AGATGAGTGGAAGGTCTTGA+CGG	0.570930	7_4:+3126682	None:intergenic
ATAAAGATACATGTGTCATA+AGG	0.500737	7_4:-3126839	Msa1135470:five_prime_UTR
ATCAGTGAATTCATTAGCCA+TGG	0.533887	7_4:+3126447	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAGATCTAAAGAGAGAT+GGG	+	chr7_4:3125501-3125520	None:intergenic	30.0%
TATTGAGATCTAAAGAGAGA+TGG	+	chr7_4:3125502-3125521	None:intergenic	30.0%
ACCGTCAAGTAAGTAAAATA+TGG	-	chr7_4:3126080-3126099	Msa1135470:intron	30.0%
GAAGGATGAACTTAAAAACA+AGG	-	chr7_4:3126420-3126439	Msa1135470:CDS	30.0%
TGAGTATAATCTTATCACCA+TGG	-	chr7_4:3126512-3126531	Msa1135470:CDS	30.0%
ACCAATATGATGTTGTTCAT+TGG	-	chr7_4:3126579-3126598	Msa1135470:intron	30.0%
TCCAATGAACAACATCATAT+TGG	+	chr7_4:3126583-3126602	None:intergenic	30.0%
TTGACCTATGAATCAATTGT+TGG	+	chr7_4:3126823-3126842	None:intergenic	30.0%
ATTGAGATCTAAAGAGAGAT+GGG	+	chr7_4:3125501-3125520	None:intergenic	30.0%
TATTGAGATCTAAAGAGAGA+TGG	+	chr7_4:3125502-3125521	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	3125265	3126860	3125265	ID=Msa1135470;Name=Msa1135470
chr7_4	mRNA	3125265	3126860	3125265	ID=Msa1135470-mRNA-1;Parent=Msa1135470;Name=Msa1135470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=86\|1\|1\|1\|1\|1\|3\|398\|131
chr7_4	exon	3125265	3125794	3125265	ID=Msa1135470-mRNA-1:exon:876;Parent=Msa1135470-mRNA-1
chr7_4	exon	3126411	3126533	3126411	ID=Msa1135470-mRNA-1:exon:875;Parent=Msa1135470-mRNA-1
chr7_4	exon	3126634	3126860	3126634	ID=Msa1135470-mRNA-1:exon:874;Parent=Msa1135470-mRNA-1
chr7_4	five_prime_UTR	3126775	3126860	3126775	ID=Msa1135470-mRNA-1:five_prime_utr;Parent=Msa1135470-mRNA-1
chr7_4	CDS	3126634	3126774	3126634	ID=Msa1135470-mRNA-1:cds;Parent=Msa1135470-mRNA-1
chr7_4	CDS	3126411	3126533	3126411	ID=Msa1135470-mRNA-1:cds;Parent=Msa1135470-mRNA-1
chr7_4	CDS	3125663	3125794	3125663	ID=Msa1135470-mRNA-1:cds;Parent=Msa1135470-mRNA-1
chr7_4	three_prime_UTR	3125265	3125662	3125265	ID=Msa1135470-mRNA-1:three_prime_utr;Parent=Msa1135470-mRNA-1

Gene Sequence

>Msa1135470

ATGGGATCATTTTTCTCCTCCTTAGTCGGCAGTGGCCCCGTACAGTCATCAGAATCATCAGAGAGTTCTTCCGTCAAGACCTTCCACTCATCTGCTCGCTGGCAACTTCACTTCAACGAACTCAAAGATTCTCCTCGTCTCGTGGTGATTGATTTCTCTGCTACATGGTGTGGACCTTGTAAAATGATGGAACCGATTCTTCAAGCCATGGCTAATGAATTCACTGATGTTGAATTCATCAAAATCGATGTTGATGAATTATCGGATGTGGCACAAGAGTTTAAGGTGCAGGCTATGCCAACGTTTGTGTTGTTGAAGAATGGGAAAGAGGTTGATAAGGTTGTTGGAGCAAAGAAGGATGAACTTAAAAACAAGGTTCAAAAGCACAAAGCTTAG

Protein sequence

>Msa1135470

MGSFFSSLVGSGPVQSSESSESSSVKTFHSSARWQLHFNELKDSPRLVVIDFSATWCGPCKMMEPILQAMANEFTDVEFIKIDVDELSDVAQEFKVQAMPTFVLLKNGKEVDKVVGAKKDELKNKVQKHKA*