AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1135470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1135470 MtrunA17_Chr7g0216481 90.299 134 10 1 1 131 1 134 1.49e-79 230
Msa1135470 MtrunA17_Chr5g0415771 55.385 130 54 1 1 130 1 126 7.21e-41 132
Msa1135470 MtrunA17_Chr5g0415761 56.034 116 51 0 15 130 12 127 6.08e-39 127
Msa1135470 MtrunA17_Chr5g0415741 54.701 117 53 0 14 130 9 125 6.45e-39 127
Msa1135470 MtrunA17_Chr1g0155721 48.214 112 58 0 19 130 2 113 1.35e-38 126
Msa1135470 MtrunA17_Chr3g0142051 46.847 111 59 0 19 129 2 112 9.38e-36 119
Msa1135470 MtrunA17_Chr5g0404831 46.018 113 61 0 19 131 4 116 7.90e-35 117
Msa1135470 MtrunA17_Chr8g0393201 42.574 101 58 0 29 129 233 333 9.66e-27 101
Msa1135470 MtrunA17_Chr7g0245141 38.095 105 65 0 22 126 23 127 1.88e-25 93.6
Msa1135470 MtrunA17_Chr8g0334481 35.238 105 68 0 22 126 25 129 1.58e-24 91.3
Msa1135470 MtrunA17_Chr2g0280411 37.143 105 66 0 23 127 9 113 4.52e-24 89.7
Msa1135470 MtrunA17_Chr4g0042051 36.697 109 69 0 18 126 5 113 7.78e-24 89.4
Msa1135470 MtrunA17_Chr2g0319291 35.398 113 73 0 14 126 1 113 2.23e-23 87.8
Msa1135470 MtrunA17_Chr1g0201781 35.955 89 55 2 41 127 74 162 1.20e-18 77.0
Msa1135470 MtrunA17_Chr1g0211871 38.298 94 53 3 35 127 77 166 9.79e-18 75.1
Msa1135470 MtrunA17_Chr3g0125821 36.082 97 55 4 38 129 78 172 1.05e-17 74.7
Msa1135470 MtrunA17_Chr2g0317731 36.145 83 51 2 48 128 89 171 1.23e-16 72.0
Msa1135470 MtrunA17_Chr7g0264661 29.508 122 82 2 8 129 10 127 4.63e-16 69.3
Msa1135470 MtrunA17_Chr7g0249461 35.484 124 69 5 2 122 61 176 1.21e-15 69.7
Msa1135470 MtrunA17_Chr8g0360031 34.343 99 60 4 32 128 79 174 1.36e-15 69.3
Msa1135470 MtrunA17_Chr4g0052481 31.707 82 54 1 49 128 85 166 3.90e-15 67.8
Msa1135470 MtrunA17_Chr4g0044731 36.842 76 47 1 48 122 84 159 2.80e-14 65.9
Msa1135470 MtrunA17_Chr4g0047431 35.000 80 52 0 49 128 25 104 2.55e-12 62.4
Msa1135470 MtrunA17_Chr1g0173181 32.468 77 51 1 43 118 425 501 2.25e-11 59.7
Msa1135470 MtrunA17_Chr3g0142031 56.098 41 18 0 79 119 5 45 3.08e-11 54.7
Msa1135470 MtrunA17_Chr2g0317701 34.667 75 47 2 44 116 61 135 4.79e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1135470 AT5G39950.1 59.398 133 52 1 1 131 1 133 1.10e-56 173
Msa1135470 AT1G45145.1 52.475 101 48 0 29 129 11 111 9.20e-36 119
Msa1135470 AT3G51030.1 46.018 113 61 0 19 131 2 114 2.75e-34 115
Msa1135470 AT1G59730.1 42.748 131 71 2 1 130 1 128 6.75e-34 115
Msa1135470 AT1G19730.1 46.429 112 59 1 19 129 2 113 1.97e-33 113
Msa1135470 AT1G69880.1 51.546 97 47 0 33 129 47 143 3.07e-33 114
Msa1135470 AT5G42980.1 47.059 102 54 0 29 130 11 112 2.54e-31 108
Msa1135470 AT3G17880.2 40.000 105 63 0 25 129 265 369 1.01e-25 99.8
Msa1135470 AT3G17880.1 40.000 105 63 0 25 129 272 376 1.24e-25 99.8
Msa1135470 AT3G08710.2 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1135470 AT3G08710.3 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1135470 AT3G08710.1 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1135470 AT3G56420.1 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1135470 AT3G56420.2 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1135470 AT3G56420.3 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1135470 AT2G40790.2 38.298 94 58 0 33 126 50 143 1.34e-21 84.7
Msa1135470 AT2G40790.1 38.298 94 58 0 33 126 50 143 1.34e-21 84.7
Msa1135470 AT1G11530.1 38.144 97 60 0 30 126 9 105 2.50e-21 82.8
Msa1135470 AT1G43560.1 36.697 109 66 3 12 117 41 149 8.88e-20 80.1
Msa1135470 AT1G76760.1 39.744 78 46 1 41 117 77 154 6.54e-19 78.2
Msa1135470 AT1G50320.1 44.286 70 38 1 43 111 85 154 4.26e-17 73.6
Msa1135470 AT3G02730.1 36.782 87 54 1 46 131 88 174 6.01e-17 73.2
Msa1135470 AT3G15360.1 32.673 101 63 4 30 128 92 189 1.89e-16 72.4
Msa1135470 AT1G03680.1 36.145 83 51 2 48 128 95 177 5.65e-16 70.9
Msa1135470 AT4G03520.1 36.620 71 44 1 48 117 101 171 1.65e-15 69.7
Msa1135470 AT3G53220.1 26.549 113 81 1 17 129 15 125 1.65e-15 68.2
Msa1135470 AT1G31020.1 30.000 110 75 1 21 128 47 156 4.33e-15 67.8
Msa1135470 AT2G35010.2 34.146 82 52 1 49 128 110 191 4.97e-15 68.6
Msa1135470 AT2G35010.1 34.146 82 52 1 49 128 110 191 4.97e-15 68.6
Msa1135470 AT5G16400.1 32.184 87 58 1 46 131 98 184 1.71e-14 67.0
Msa1135470 AT4G04950.1 33.645 107 67 1 22 128 2 104 4.46e-14 67.8
Msa1135470 AT4G32580.1 31.868 91 62 0 38 128 14 104 4.68e-14 65.1
Msa1135470 AT1G52990.1 32.632 95 63 1 36 129 218 312 1.53e-13 65.9
Msa1135470 AT4G26160.1 32.292 96 61 2 38 129 105 200 2.32e-12 62.0
Msa1135470 AT2G41680.1 28.889 90 62 2 43 130 440 529 1.11e-11 61.2

Find 49 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCAAAATTGATGTATT+TGG 0.184205 7_4:-3125464 Msa1135470:three_prime_UTR
GGATGTGGCACAAGAGTTTA+AGG 0.257673 7_4:-3125773 Msa1135470:CDS
ATGTAGAAAGTTAAGTTATA+TGG 0.292169 7_4:+3125310 None:intergenic
GTTGTATAATTTGAATTTGT+TGG 0.301363 7_4:-3125555 Msa1135470:three_prime_UTR
TGAAACCATCTGTCCTGTTT+TGG 0.334447 7_4:-3125367 Msa1135470:three_prime_UTR
GTTTCCAACAATTGATTCAT+AGG 0.346322 7_4:-3125287 Msa1135470:three_prime_UTR
AATCGATGTTGATGAATTAT+CGG 0.348841 7_4:-3126410 Msa1135470:intron
ACCAATATGATGTTGTTCAT+TGG 0.363484 7_4:-3125524 Msa1135470:three_prime_UTR
ATTGTCAATTGCAACTGTTT+TGG 0.366693 7_4:-3125401 Msa1135470:three_prime_UTR
TTGACCTATGAATCAATTGT+TGG 0.382534 7_4:+3125283 None:intergenic
TGTGGTTGACTTTACTTGCT+TGG 0.384738 7_4:+3126808 None:intergenic
TCCAATGAACAACATCATAT+TGG 0.401700 7_4:+3125523 None:intergenic
AAAGAGGTTGATAAGGTTGT+TGG 0.418770 7_4:-3125712 Msa1135470:CDS
GACAAAGAAGACTCCAAAAC+AGG 0.433535 7_4:+3125354 None:intergenic
CTTCTTTGTCACTTGTTTCG+CGG 0.436751 7_4:-3125341 Msa1135470:three_prime_UTR
GCTGTCTTTGTGCTGAATGT+TGG 0.441277 7_4:+3126776 None:intergenic
TTAGCCATGGCTTGAAGAAT+CGG 0.442279 7_4:+3126460 None:intergenic
CGTTTGTGTTGTTGAAGAAT+GGG 0.453169 7_4:-3125735 Msa1135470:CDS
TTGTATAATTTGAATTTGTT+GGG 0.455935 7_4:-3125554 Msa1135470:three_prime_UTR
ACGTTTGTGTTGTTGAAGAA+TGG 0.456074 7_4:-3125736 Msa1135470:CDS
TTCTCCTCCTTAGTCGGCAG+TGG 0.459284 7_4:-3126740 Msa1135470:CDS
TAAGGTTGTTGGAGCAAAGA+AGG 0.462298 7_4:-3125701 Msa1135470:CDS
TACGGGGCCACTGCCGACTA+AGG 0.463959 7_4:+3126733 None:intergenic
TTCAGCACAAAGACAGCAAT+GGG 0.470933 7_4:-3126770 Msa1135470:exon
TGATTGATTTCTCTGCTACA+TGG 0.471205 7_4:-3126507 Msa1135470:CDS
TGATGATTCTGATGACTGTA+CGG 0.487264 7_4:+3126715 None:intergenic
ATGATACTGTGAATGTGATC+TGG 0.489126 7_4:-3125425 Msa1135470:three_prime_UTR
GAATGGGAAAGAGGTTGATA+AGG 0.491854 7_4:-3125719 Msa1135470:CDS
ATAAAGATACATGTGTCATA+AGG 0.500737 7_4:-3126839 Msa1135470:five_prime_UTR
GATGATTCTGATGACTGTAC+GGG 0.500909 7_4:+3126716 None:intergenic
GATTTCTCTGCTACATGGTG+TGG 0.519111 7_4:-3126502 Msa1135470:CDS
GGCACAAGAGTTTAAGGTGC+AGG 0.519916 7_4:-3125767 Msa1135470:CDS
ATCAGTGAATTCATTAGCCA+TGG 0.533887 7_4:+3126447 None:intergenic
GTGTGGACCTTGTAAAATGA+TGG 0.541235 7_4:-3126485 Msa1135470:CDS
CCTTCCACTCATCTGCTCGC+TGG 0.549073 7_4:-3126673 Msa1135470:CDS
GTTGTTGAAGAATGGGAAAG+AGG 0.553595 7_4:-3125728 Msa1135470:CDS
AGATGAGTGGAAGGTCTTGA+CGG 0.570930 7_4:+3126682 None:intergenic
AGACTCCAAAACAGGACAGA+TGG 0.575715 7_4:+3125362 None:intergenic
GAATGTTGGAGTTGTTCTTG+TGG 0.588851 7_4:+3126790 None:intergenic
GGGGCCACTGCCGACTAAGG+AGG 0.594415 7_4:+3126736 None:intergenic
GTTGCCAGCGAGCAGATGAG+TGG 0.605035 7_4:+3126669 None:intergenic
TTCTTCAACAACACAAACGT+TGG 0.610426 7_4:+3125739 None:intergenic
ATTCAGCACAAAGACAGCAA+TGG 0.613497 7_4:-3126771 Msa1135470:exon
CCAGCGAGCAGATGAGTGGA+AGG 0.627549 7_4:+3126673 None:intergenic
GGAACCGATTCTTCAAGCCA+TGG 0.630372 7_4:-3126464 Msa1135470:CDS
TGAGTATAATCTTATCACCA+TGG 0.657251 7_4:-3125591 Msa1135470:three_prime_UTR
ACTTTGAGCAGATATGATGT+GGG 0.676948 7_4:+3125250 None:intergenic
CAACTTTATCATCATCACCA+TGG 0.681834 7_4:+3125574 None:intergenic
ATGATTCTGATGACTGTACG+GGG 0.715538 7_4:+3126717 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATGTTATTTGTTAAAA+TGG - chr7_4:3125867-3125886 Msa1135470:intron 10.0%
!!! TAACTAAAAAAATACATTTT+TGG - chr7_4:3125933-3125952 Msa1135470:intron 10.0%
!!! TCATTTTTACAAATTATTAT+CGG - chr7_4:3126224-3126243 Msa1135470:intron 10.0%
!!! AATTATGTTATTTGTTAAAA+TGG - chr7_4:3125867-3125886 Msa1135470:intron 10.0%
!!! TAACTAAAAAAATACATTTT+TGG - chr7_4:3125933-3125952 Msa1135470:intron 10.0%
!!! TCATTTTTACAAATTATTAT+CGG - chr7_4:3126224-3126243 Msa1135470:intron 10.0%
!! CCAAAAAATAGAAAAATAAA+TGG + chr7_4:3125532-3125551 None:intergenic 15.0%
!!! CCATTTATTTTTCTATTTTT+TGG - chr7_4:3125529-3125548 Msa1135470:three_prime_UTR 15.0%
!!! ATTGTATGTTATTTTTTTGA+GGG - chr7_4:3125840-3125859 Msa1135470:intron 15.0%
!!! AATTATACAAAAAGCATTTA+AGG - chr7_4:3125999-3126018 Msa1135470:intron 15.0%
!!! ATAATGTTTTAATTTTTGTG+TGG - chr7_4:3126288-3126307 Msa1135470:intron 15.0%
!!! TTGTATAATTTGAATTTGTT+GGG - chr7_4:3126549-3126568 Msa1135470:intron 15.0%
!! CCAAAAAATAGAAAAATAAA+TGG + chr7_4:3125532-3125551 None:intergenic 15.0%
!!! CCATTTATTTTTCTATTTTT+TGG - chr7_4:3125529-3125548 Msa1135470:three_prime_UTR 15.0%
!!! ATTGTATGTTATTTTTTTGA+GGG - chr7_4:3125840-3125859 Msa1135470:intron 15.0%
!!! AATTATACAAAAAGCATTTA+AGG - chr7_4:3125999-3126018 Msa1135470:intron 15.0%
!!! ATAATGTTTTAATTTTTGTG+TGG - chr7_4:3126288-3126307 Msa1135470:intron 15.0%
!!! TTGTATAATTTGAATTTGTT+GGG - chr7_4:3126549-3126568 Msa1135470:intron 15.0%
!!! CATTGTATGTTATTTTTTTG+AGG - chr7_4:3125839-3125858 Msa1135470:intron 20.0%
!!! ATGTTATTTGTTAAAATGGA+TGG - chr7_4:3125871-3125890 Msa1135470:intron 20.0%
!!! TTAATTTTTGTGTGGTTTTT+TGG - chr7_4:3126296-3126315 Msa1135470:intron 20.0%
!! GTTGTATAATTTGAATTTGT+TGG - chr7_4:3126548-3126567 Msa1135470:intron 20.0%
!! ATGTAGAAAGTTAAGTTATA+TGG + chr7_4:3126796-3126815 None:intergenic 20.0%
!!! CATTGTATGTTATTTTTTTG+AGG - chr7_4:3125839-3125858 Msa1135470:intron 20.0%
!!! ATGTTATTTGTTAAAATGGA+TGG - chr7_4:3125871-3125890 Msa1135470:intron 20.0%
!!! TTAATTTTTGTGTGGTTTTT+TGG - chr7_4:3126296-3126315 Msa1135470:intron 20.0%
!! GTTGTATAATTTGAATTTGT+TGG - chr7_4:3126548-3126567 Msa1135470:intron 20.0%
!! ATGTAGAAAGTTAAGTTATA+TGG + chr7_4:3126796-3126815 None:intergenic 20.0%
! TTCACAAACAGAAAATCAAA+AGG + chr7_4:3125571-3125590 None:intergenic 25.0%
!!! TTTTGATTTTCTGTTTGTGA+AGG - chr7_4:3125570-3125589 Msa1135470:three_prime_UTR 25.0%
!! AATCGATGTTGATGAATTAT+CGG - chr7_4:3125693-3125712 Msa1135470:CDS 25.0%
! ACAGTATAGTTGATCAAATT+GGG + chr7_4:3125732-3125751 None:intergenic 25.0%
! AACAGTATAGTTGATCAAAT+TGG + chr7_4:3125733-3125752 None:intergenic 25.0%
!! ACCATATTTTACTTACTTGA+CGG + chr7_4:3126084-3126103 None:intergenic 25.0%
! AGAAGCAAAATTGATGTATT+TGG - chr7_4:3126639-3126658 Msa1135470:CDS 25.0%
! TTCACAAACAGAAAATCAAA+AGG + chr7_4:3125571-3125590 None:intergenic 25.0%
!!! TTTTGATTTTCTGTTTGTGA+AGG - chr7_4:3125570-3125589 Msa1135470:three_prime_UTR 25.0%
!! AATCGATGTTGATGAATTAT+CGG - chr7_4:3125693-3125712 Msa1135470:CDS 25.0%
! ACAGTATAGTTGATCAAATT+GGG + chr7_4:3125732-3125751 None:intergenic 25.0%
! AACAGTATAGTTGATCAAAT+TGG + chr7_4:3125733-3125752 None:intergenic 25.0%
!! ACCATATTTTACTTACTTGA+CGG + chr7_4:3126084-3126103 None:intergenic 25.0%
! AGAAGCAAAATTGATGTATT+TGG - chr7_4:3126639-3126658 Msa1135470:CDS 25.0%
ATTGAGATCTAAAGAGAGAT+GGG + chr7_4:3125501-3125520 None:intergenic 30.0%
TATTGAGATCTAAAGAGAGA+TGG + chr7_4:3125502-3125521 None:intergenic 30.0%
! TTCTTTAGATGTTTTTCGTG+TGG - chr7_4:3125906-3125925 Msa1135470:intron 30.0%
ACCGTCAAGTAAGTAAAATA+TGG - chr7_4:3126080-3126099 Msa1135470:intron 30.0%
! TGGTCAAAAATTGATTCACT+CGG - chr7_4:3126100-3126119 Msa1135470:intron 30.0%
!! ATTTTTGTGTGGTTTTTTGG+TGG - chr7_4:3126299-3126318 Msa1135470:intron 30.0%
!! TTTTTGTGTGGTTTTTTGGT+GGG - chr7_4:3126300-3126319 Msa1135470:intron 30.0%
GAAGGATGAACTTAAAAACA+AGG - chr7_4:3126420-3126439 Msa1135470:CDS 30.0%
TGAGTATAATCTTATCACCA+TGG - chr7_4:3126512-3126531 Msa1135470:CDS 30.0%
ACCAATATGATGTTGTTCAT+TGG - chr7_4:3126579-3126598 Msa1135470:intron 30.0%
TCCAATGAACAACATCATAT+TGG + chr7_4:3126583-3126602 None:intergenic 30.0%
! ATTGTCAATTGCAACTGTTT+TGG - chr7_4:3126702-3126721 Msa1135470:CDS 30.0%
! GTTTCCAACAATTGATTCAT+AGG - chr7_4:3126816-3126835 Msa1135470:five_prime_UTR 30.0%
TTGACCTATGAATCAATTGT+TGG + chr7_4:3126823-3126842 None:intergenic 30.0%
ATTGAGATCTAAAGAGAGAT+GGG + chr7_4:3125501-3125520 None:intergenic 30.0%
TATTGAGATCTAAAGAGAGA+TGG + chr7_4:3125502-3125521 None:intergenic 30.0%
! TTCTTTAGATGTTTTTCGTG+TGG - chr7_4:3125906-3125925 Msa1135470:intron 30.0%
ACCGTCAAGTAAGTAAAATA+TGG - chr7_4:3126080-3126099 Msa1135470:intron 30.0%
! TGGTCAAAAATTGATTCACT+CGG - chr7_4:3126100-3126119 Msa1135470:intron 30.0%
!! ATTTTTGTGTGGTTTTTTGG+TGG - chr7_4:3126299-3126318 Msa1135470:intron 30.0%
!! TTTTTGTGTGGTTTTTTGGT+GGG - chr7_4:3126300-3126319 Msa1135470:intron 30.0%
GAAGGATGAACTTAAAAACA+AGG - chr7_4:3126420-3126439 Msa1135470:CDS 30.0%
TGAGTATAATCTTATCACCA+TGG - chr7_4:3126512-3126531 Msa1135470:CDS 30.0%
ACCAATATGATGTTGTTCAT+TGG - chr7_4:3126579-3126598 Msa1135470:intron 30.0%
TCCAATGAACAACATCATAT+TGG + chr7_4:3126583-3126602 None:intergenic 30.0%
! ATTGTCAATTGCAACTGTTT+TGG - chr7_4:3126702-3126721 Msa1135470:CDS 30.0%
! GTTTCCAACAATTGATTCAT+AGG - chr7_4:3126816-3126835 Msa1135470:five_prime_UTR 30.0%
TTGACCTATGAATCAATTGT+TGG + chr7_4:3126823-3126842 None:intergenic 30.0%
!! TCATTTTTCTCCTCCTTAGT+CGG - chr7_4:3125357-3125376 Msa1135470:three_prime_UTR 35.0%
TGATGATTCTGATGACTGTA+CGG + chr7_4:3125391-3125410 None:intergenic 35.0%
! TGATTTTCTGTTTGTGAAGG+TGG - chr7_4:3125573-3125592 Msa1135470:three_prime_UTR 35.0%
! TGATTGATTTCTCTGCTACA+TGG - chr7_4:3125596-3125615 Msa1135470:three_prime_UTR 35.0%
!! ATCGGTTCCATCATTTTACA+AGG + chr7_4:3125628-3125647 None:intergenic 35.0%
ATCAGTGAATTCATTAGCCA+TGG + chr7_4:3125659-3125678 None:intergenic 35.0%
!!! AATTTTTAGCACCGACACTT+CGG - chr7_4:3125767-3125786 Msa1135470:CDS 35.0%
!!! GGTTTTTTGGTGGGAATTAT+AGG - chr7_4:3126309-3126328 Msa1135470:intron 35.0%
TTCTTCAACAACACAAACGT+TGG + chr7_4:3126367-3126386 None:intergenic 35.0%
! ACGTTTGTGTTGTTGAAGAA+TGG - chr7_4:3126367-3126386 Msa1135470:intron 35.0%
! CGTTTGTGTTGTTGAAGAAT+GGG - chr7_4:3126368-3126387 Msa1135470:intron 35.0%
!! AAAGAGGTTGATAAGGTTGT+TGG - chr7_4:3126391-3126410 Msa1135470:intron 35.0%
CAACTTTATCATCATCACCA+TGG + chr7_4:3126532-3126551 None:intergenic 35.0%
ATGATACTGTGAATGTGATC+TGG - chr7_4:3126678-3126697 Msa1135470:CDS 35.0%
!! TCATTTTTCTCCTCCTTAGT+CGG - chr7_4:3125357-3125376 Msa1135470:three_prime_UTR 35.0%
TGATGATTCTGATGACTGTA+CGG + chr7_4:3125391-3125410 None:intergenic 35.0%
! TGATTTTCTGTTTGTGAAGG+TGG - chr7_4:3125573-3125592 Msa1135470:three_prime_UTR 35.0%
! TGATTGATTTCTCTGCTACA+TGG - chr7_4:3125596-3125615 Msa1135470:three_prime_UTR 35.0%
!! ATCGGTTCCATCATTTTACA+AGG + chr7_4:3125628-3125647 None:intergenic 35.0%
ATCAGTGAATTCATTAGCCA+TGG + chr7_4:3125659-3125678 None:intergenic 35.0%
!!! AATTTTTAGCACCGACACTT+CGG - chr7_4:3125767-3125786 Msa1135470:CDS 35.0%
!!! GGTTTTTTGGTGGGAATTAT+AGG - chr7_4:3126309-3126328 Msa1135470:intron 35.0%
TTCTTCAACAACACAAACGT+TGG + chr7_4:3126367-3126386 None:intergenic 35.0%
! ACGTTTGTGTTGTTGAAGAA+TGG - chr7_4:3126367-3126386 Msa1135470:intron 35.0%
! CGTTTGTGTTGTTGAAGAAT+GGG - chr7_4:3126368-3126387 Msa1135470:intron 35.0%
!! AAAGAGGTTGATAAGGTTGT+TGG - chr7_4:3126391-3126410 Msa1135470:intron 35.0%
CAACTTTATCATCATCACCA+TGG + chr7_4:3126532-3126551 None:intergenic 35.0%
ATGATACTGTGAATGTGATC+TGG - chr7_4:3126678-3126697 Msa1135470:CDS 35.0%
! TGTGGTTGACTTTACTTGCT+TGG + chr7_4:3125298-3125317 None:intergenic 40.0%
GAATGTTGGAGTTGTTCTTG+TGG + chr7_4:3125316-3125335 None:intergenic 40.0%
ATTCAGCACAAAGACAGCAA+TGG - chr7_4:3125332-3125351 Msa1135470:three_prime_UTR 40.0%
TTCAGCACAAAGACAGCAAT+GGG - chr7_4:3125333-3125352 Msa1135470:three_prime_UTR 40.0%
ATGATTCTGATGACTGTACG+GGG + chr7_4:3125389-3125408 None:intergenic 40.0%
GATGATTCTGATGACTGTAC+GGG + chr7_4:3125390-3125409 None:intergenic 40.0%
GTGTGGACCTTGTAAAATGA+TGG - chr7_4:3125618-3125637 Msa1135470:three_prime_UTR 40.0%
TTAGCCATGGCTTGAAGAAT+CGG + chr7_4:3125646-3125665 None:intergenic 40.0%
TTGGTGGGAATTATAGGATG+TGG - chr7_4:3126315-3126334 Msa1135470:intron 40.0%
GTTGTTGAAGAATGGGAAAG+AGG - chr7_4:3126375-3126394 Msa1135470:intron 40.0%
!! GAATGGGAAAGAGGTTGATA+AGG - chr7_4:3126384-3126403 Msa1135470:intron 40.0%
TAAGGTTGTTGGAGCAAAGA+AGG - chr7_4:3126402-3126421 Msa1135470:intron 40.0%
!!! GCAACTGTTTTGGAGTGTTT+AGG - chr7_4:3126712-3126731 Msa1135470:CDS 40.0%
! TGAAACCATCTGTCCTGTTT+TGG - chr7_4:3126736-3126755 Msa1135470:CDS 40.0%
GACAAAGAAGACTCCAAAAC+AGG + chr7_4:3126752-3126771 None:intergenic 40.0%
! CTTCTTTGTCACTTGTTTCG+CGG - chr7_4:3126762-3126781 Msa1135470:exon 40.0%
! TGTGGTTGACTTTACTTGCT+TGG + chr7_4:3125298-3125317 None:intergenic 40.0%
GAATGTTGGAGTTGTTCTTG+TGG + chr7_4:3125316-3125335 None:intergenic 40.0%
ATTCAGCACAAAGACAGCAA+TGG - chr7_4:3125332-3125351 Msa1135470:three_prime_UTR 40.0%
TTCAGCACAAAGACAGCAAT+GGG - chr7_4:3125333-3125352 Msa1135470:three_prime_UTR 40.0%
ATGATTCTGATGACTGTACG+GGG + chr7_4:3125389-3125408 None:intergenic 40.0%
GATGATTCTGATGACTGTAC+GGG + chr7_4:3125390-3125409 None:intergenic 40.0%
GTGTGGACCTTGTAAAATGA+TGG - chr7_4:3125618-3125637 Msa1135470:three_prime_UTR 40.0%
TTAGCCATGGCTTGAAGAAT+CGG + chr7_4:3125646-3125665 None:intergenic 40.0%
TTGGTGGGAATTATAGGATG+TGG - chr7_4:3126315-3126334 Msa1135470:intron 40.0%
GTTGTTGAAGAATGGGAAAG+AGG - chr7_4:3126375-3126394 Msa1135470:intron 40.0%
!! GAATGGGAAAGAGGTTGATA+AGG - chr7_4:3126384-3126403 Msa1135470:intron 40.0%
TAAGGTTGTTGGAGCAAAGA+AGG - chr7_4:3126402-3126421 Msa1135470:intron 40.0%
!!! GCAACTGTTTTGGAGTGTTT+AGG - chr7_4:3126712-3126731 Msa1135470:CDS 40.0%
! TGAAACCATCTGTCCTGTTT+TGG - chr7_4:3126736-3126755 Msa1135470:CDS 40.0%
GACAAAGAAGACTCCAAAAC+AGG + chr7_4:3126752-3126771 None:intergenic 40.0%
! CTTCTTTGTCACTTGTTTCG+CGG - chr7_4:3126762-3126781 Msa1135470:exon 40.0%
GCTGTCTTTGTGCTGAATGT+TGG + chr7_4:3125330-3125349 None:intergenic 45.0%
AGATGAGTGGAAGGTCTTGA+CGG + chr7_4:3125424-3125443 None:intergenic 45.0%
GATTTCTCTGCTACATGGTG+TGG - chr7_4:3125601-3125620 Msa1135470:three_prime_UTR 45.0%
AAACCCTCTATCCGAAGTGT+CGG + chr7_4:3125781-3125800 None:intergenic 45.0%
GGATGTGGCACAAGAGTTTA+AGG - chr7_4:3126330-3126349 Msa1135470:intron 45.0%
AGACTCCAAAACAGGACAGA+TGG + chr7_4:3126744-3126763 None:intergenic 45.0%
GCTGTCTTTGTGCTGAATGT+TGG + chr7_4:3125330-3125349 None:intergenic 45.0%
AGATGAGTGGAAGGTCTTGA+CGG + chr7_4:3125424-3125443 None:intergenic 45.0%
GATTTCTCTGCTACATGGTG+TGG - chr7_4:3125601-3125620 Msa1135470:three_prime_UTR 45.0%
AAACCCTCTATCCGAAGTGT+CGG + chr7_4:3125781-3125800 None:intergenic 45.0%
GGATGTGGCACAAGAGTTTA+AGG - chr7_4:3126330-3126349 Msa1135470:intron 45.0%
AGACTCCAAAACAGGACAGA+TGG + chr7_4:3126744-3126763 None:intergenic 45.0%
!! GAGATGGGTTTTACGAGACG+AGG + chr7_4:3125486-3125505 None:intergenic 50.0%
! GGAACCGATTCTTCAAGCCA+TGG - chr7_4:3125639-3125658 Msa1135470:three_prime_UTR 50.0%
! GGCACAAGAGTTTAAGGTGC+AGG - chr7_4:3126336-3126355 Msa1135470:intron 50.0%
!! GAGATGGGTTTTACGAGACG+AGG + chr7_4:3125486-3125505 None:intergenic 50.0%
! GGAACCGATTCTTCAAGCCA+TGG - chr7_4:3125639-3125658 Msa1135470:three_prime_UTR 50.0%
! GGCACAAGAGTTTAAGGTGC+AGG - chr7_4:3126336-3126355 Msa1135470:intron 50.0%
TTCTCCTCCTTAGTCGGCAG+TGG - chr7_4:3125363-3125382 Msa1135470:three_prime_UTR 55.0%
!! AGCACCGACACTTCGGATAG+AGG - chr7_4:3125774-3125793 Msa1135470:CDS 55.0%
! GCACCGACACTTCGGATAGA+GGG - chr7_4:3125775-3125794 Msa1135470:CDS 55.0%
TTCTCCTCCTTAGTCGGCAG+TGG - chr7_4:3125363-3125382 Msa1135470:three_prime_UTR 55.0%
!! AGCACCGACACTTCGGATAG+AGG - chr7_4:3125774-3125793 Msa1135470:CDS 55.0%
! GCACCGACACTTCGGATAGA+GGG - chr7_4:3125775-3125794 Msa1135470:CDS 55.0%
CCAGCGAGCAGATGAGTGGA+AGG + chr7_4:3125433-3125452 None:intergenic 60.0%
CCTTCCACTCATCTGCTCGC+TGG - chr7_4:3125430-3125449 Msa1135470:three_prime_UTR 60.0%
GTTGCCAGCGAGCAGATGAG+TGG + chr7_4:3125437-3125456 None:intergenic 60.0%
CCAGCGAGCAGATGAGTGGA+AGG + chr7_4:3125433-3125452 None:intergenic 60.0%
CCTTCCACTCATCTGCTCGC+TGG - chr7_4:3125430-3125449 Msa1135470:three_prime_UTR 60.0%
GTTGCCAGCGAGCAGATGAG+TGG + chr7_4:3125437-3125456 None:intergenic 60.0%
! TACGGGGCCACTGCCGACTA+AGG + chr7_4:3125373-3125392 None:intergenic 65.0%
! TACGGGGCCACTGCCGACTA+AGG + chr7_4:3125373-3125392 None:intergenic 65.0%
! GGGGCCACTGCCGACTAAGG+AGG + chr7_4:3125370-3125389 None:intergenic 70.0%
! GGGGCCACTGCCGACTAAGG+AGG + chr7_4:3125370-3125389 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 3125265 3126860 3125265 ID=Msa1135470;Name=Msa1135470
chr7_4 mRNA 3125265 3126860 3125265 ID=Msa1135470-mRNA-1;Parent=Msa1135470;Name=Msa1135470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=86|1|1|1|1|1|3|398|131
chr7_4 exon 3125265 3125794 3125265 ID=Msa1135470-mRNA-1:exon:876;Parent=Msa1135470-mRNA-1
chr7_4 exon 3126411 3126533 3126411 ID=Msa1135470-mRNA-1:exon:875;Parent=Msa1135470-mRNA-1
chr7_4 exon 3126634 3126860 3126634 ID=Msa1135470-mRNA-1:exon:874;Parent=Msa1135470-mRNA-1
chr7_4 five_prime_UTR 3126775 3126860 3126775 ID=Msa1135470-mRNA-1:five_prime_utr;Parent=Msa1135470-mRNA-1
chr7_4 CDS 3126634 3126774 3126634 ID=Msa1135470-mRNA-1:cds;Parent=Msa1135470-mRNA-1
chr7_4 CDS 3126411 3126533 3126411 ID=Msa1135470-mRNA-1:cds;Parent=Msa1135470-mRNA-1
chr7_4 CDS 3125663 3125794 3125663 ID=Msa1135470-mRNA-1:cds;Parent=Msa1135470-mRNA-1
chr7_4 three_prime_UTR 3125265 3125662 3125265 ID=Msa1135470-mRNA-1:three_prime_utr;Parent=Msa1135470-mRNA-1
Gene Sequence

>Msa1135470

ATGGGATCATTTTTCTCCTCCTTAGTCGGCAGTGGCCCCGTACAGTCATCAGAATCATCAGAGAGTTCTTCCGTCAAGACCTTCCACTCATCTGCTCGCTGGCAACTTCACTTCAACGAACTCAAAGATTCTCCTCGTCTCGTGGTGATTGATTTCTCTGCTACATGGTGTGGACCTTGTAAAATGATGGAACCGATTCTTCAAGCCATGGCTAATGAATTCACTGATGTTGAATTCATCAAAATCGATGTTGATGAATTATCGGATGTGGCACAAGAGTTTAAGGTGCAGGCTATGCCAACGTTTGTGTTGTTGAAGAATGGGAAAGAGGTTGATAAGGTTGTTGGAGCAAAGAAGGATGAACTTAAAAACAAGGTTCAAAAGCACAAAGCTTAG

Protein sequence

>Msa1135470

MGSFFSSLVGSGPVQSSESSESSSVKTFHSSARWQLHFNELKDSPRLVVIDFSATWCGPCKMMEPILQAMANEFTDVEFIKIDVDELSDVAQEFKVQAMPTFVLLKNGKEVDKVVGAKKDELKNKVQKHKA*