Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005990 | ACZ37068.1 | 95.420 | 131 | 6 | 0 | 1 | 131 | 1 | 131 | 1.20e-79 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005990 | sp|Q38879|TRXH2_ARATH | 59.398 | 133 | 52 | 1 | 1 | 131 | 1 | 133 | 1.08e-55 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005990 | D8L5D9 | 95.420 | 131 | 6 | 0 | 1 | 131 | 1 | 131 | 5.73e-80 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa1005990 | 0.830772 | 2.433014e-55 | -8.615850e-47 |
| Msa0003890 | Msa1005990 | 0.812996 | 3.200524e-51 | -8.615850e-47 |
| Msa0006110 | Msa1005990 | 0.831102 | 2.019244e-55 | -8.615850e-47 |
| Msa0020410 | Msa1005990 | 0.815427 | 9.298767e-52 | -8.615850e-47 |
| Msa0026430 | Msa1005990 | 0.834124 | 3.592723e-56 | -8.615850e-47 |
| Msa0026910 | Msa1005990 | 0.812122 | 4.969860e-51 | -8.615850e-47 |
| Msa0028420 | Msa1005990 | 0.807648 | 4.561190e-50 | -8.615850e-47 |
| Msa0043980 | Msa1005990 | 0.839606 | 1.433299e-57 | -8.615850e-47 |
| Msa0044000 | Msa1005990 | 0.809456 | 1.875636e-50 | -8.615850e-47 |
| Msa0051630 | Msa1005990 | 0.822157 | 2.752475e-53 | -8.615850e-47 |
| Msa0051740 | Msa1005990 | 0.823250 | 1.532245e-53 | -8.615850e-47 |
| Msa0051750 | Msa1005990 | 0.822721 | 2.035360e-53 | -8.615850e-47 |
| Msa0052680 | Msa1005990 | 0.809037 | 2.306471e-50 | -8.615850e-47 |
| Msa0052730 | Msa1005990 | 0.800290 | 1.544409e-48 | -8.615850e-47 |
| Msa0054480 | Msa1005990 | 0.810617 | 1.054611e-50 | -8.615850e-47 |
| Msa0089360 | Msa1005990 | 0.807351 | 5.274088e-50 | -8.615850e-47 |
| Msa0090360 | Msa1005990 | 0.829946 | 3.873269e-55 | -8.615850e-47 |
| Msa0090570 | Msa1005990 | 0.809042 | 2.300202e-50 | -8.615850e-47 |
| Msa0607050 | Msa1005990 | 0.813726 | 2.212638e-51 | -8.615850e-47 |
| Msa0610430 | Msa1005990 | 0.802633 | 5.114034e-49 | -8.615850e-47 |
| Msa0610840 | Msa1005990 | -0.821079 | 4.885381e-53 | -8.615850e-47 |
| Msa0615710 | Msa1005990 | 0.806916 | 6.518517e-50 | -8.615850e-47 |
| Msa0625720 | Msa1005990 | 0.811510 | 6.754372e-51 | -8.615850e-47 |
| Msa0643350 | Msa1005990 | 0.800828 | 1.199884e-48 | -8.615850e-47 |
| Msa0644840 | Msa1005990 | 0.805300 | 1.427095e-49 | -8.615850e-47 |
| Msa0661650 | Msa1005990 | 0.824625 | 7.291900e-54 | -8.615850e-47 |
| Msa0662570 | Msa1005990 | 0.801163 | 1.024879e-48 | -8.615850e-47 |
| Msa0663390 | Msa1005990 | 0.824087 | 9.761912e-54 | -8.615850e-47 |
| Msa0690150 | Msa1005990 | 0.803824 | 2.899606e-49 | -8.615850e-47 |
| Msa0692040 | Msa1005990 | -0.806947 | 6.423271e-50 | -8.615850e-47 |
| Msa0709160 | Msa1005990 | 0.810038 | 1.406189e-50 | -8.615850e-47 |
| Msa0711780 | Msa1005990 | 0.816160 | 6.382511e-52 | -8.615850e-47 |
| Msa0715700 | Msa1005990 | 0.803564 | 3.282848e-49 | -8.615850e-47 |
| Msa0749290 | Msa1005990 | 0.818556 | 1.842729e-52 | -8.615850e-47 |
| Msa0750170 | Msa1005990 | 0.810117 | 1.352066e-50 | -8.615850e-47 |
| Msa0789020 | Msa1005990 | 0.820399 | 7.003419e-53 | -8.615850e-47 |
| Msa0794670 | Msa1005990 | 0.816103 | 6.572605e-52 | -8.615850e-47 |
| Msa0794730 | Msa1005990 | 0.820840 | 5.545985e-53 | -8.615850e-47 |
| Msa0797930 | Msa1005990 | 0.815968 | 7.042806e-52 | -8.615850e-47 |
| Msa0808080 | Msa1005990 | 0.832065 | 1.169127e-55 | -8.615850e-47 |
| Msa0820770 | Msa1005990 | 0.800455 | 1.429899e-48 | -8.615850e-47 |
| Msa0832340 | Msa1005990 | 0.812468 | 4.176907e-51 | -8.615850e-47 |
| Msa0835960 | Msa1005990 | 0.837031 | 6.605077e-57 | -8.615850e-47 |
| Msa0127800 | Msa1005990 | 0.835860 | 1.312378e-56 | -8.615850e-47 |
| Msa0137840 | Msa1005990 | 0.804586 | 2.011558e-49 | -8.615850e-47 |
| Msa0140820 | Msa1005990 | 0.810023 | 1.416145e-50 | -8.615850e-47 |
| Msa0145580 | Msa1005990 | 0.802646 | 5.081983e-49 | -8.615850e-47 |
| Msa0157100 | Msa1005990 | 0.800551 | 1.366999e-48 | -8.615850e-47 |
| Msa0182620 | Msa1005990 | -0.811092 | 8.323882e-51 | -8.615850e-47 |
| Msa0184040 | Msa1005990 | 0.820090 | 8.240180e-53 | -8.615850e-47 |
| Msa0205510 | Msa1005990 | 0.832646 | 8.395638e-56 | -8.615850e-47 |
| Msa0206010 | Msa1005990 | 0.823657 | 1.230877e-53 | -8.615850e-47 |
| Msa0224390 | Msa1005990 | 0.805091 | 1.577674e-49 | -8.615850e-47 |
| Msa0230610 | Msa1005990 | 0.812042 | 5.171823e-51 | -8.615850e-47 |
| Msa0231980 | Msa1005990 | 0.833227 | 6.018737e-56 | -8.615850e-47 |
| Msa0232050 | Msa1005990 | 0.823647 | 1.237407e-53 | -8.615850e-47 |
| Msa0376310 | Msa1005990 | 0.817337 | 3.474523e-52 | -8.615850e-47 |
| Msa0376350 | Msa1005990 | 0.805466 | 1.317249e-49 | -8.615850e-47 |
| Msa0376910 | Msa1005990 | 0.811636 | 6.341306e-51 | -8.615850e-47 |
| Msa0379640 | Msa1005990 | 0.801705 | 7.938349e-49 | -8.615850e-47 |
| Msa0380300 | Msa1005990 | 0.825243 | 5.213508e-54 | -8.615850e-47 |
| Msa0385580 | Msa1005990 | 0.803314 | 3.698807e-49 | -8.615850e-47 |
| Msa0390730 | Msa1005990 | 0.826686 | 2.367555e-54 | -8.615850e-47 |
| Msa0395820 | Msa1005990 | 0.804857 | 1.766501e-49 | -8.615850e-47 |
| Msa0402790 | Msa1005990 | 0.820410 | 6.960293e-53 | -8.615850e-47 |
| Msa0417360 | Msa1005990 | 0.804713 | 1.892984e-49 | -8.615850e-47 |
| Msa0428080 | Msa1005990 | 0.809518 | 1.818377e-50 | -8.615850e-47 |
| Msa0455760 | Msa1005990 | 0.813088 | 3.055406e-51 | -8.615850e-47 |
| Msa0457960 | Msa1005990 | 0.809508 | 1.827458e-50 | -8.615850e-47 |
| Msa0463060 | Msa1005990 | 0.806410 | 8.337886e-50 | -8.615850e-47 |
| Msa0468330 | Msa1005990 | 0.803944 | 2.737062e-49 | -8.615850e-47 |
| Msa0469990 | Msa1005990 | 0.806345 | 8.607195e-50 | -8.615850e-47 |
| Msa0471900 | Msa1005990 | 0.804448 | 2.150247e-49 | -8.615850e-47 |
| Msa0481530 | Msa1005990 | 0.820549 | 6.468955e-53 | -8.615850e-47 |
| Msa0980880 | Msa1005990 | 0.815481 | 9.041658e-52 | -8.615850e-47 |
| Msa0992020 | Msa1005990 | 0.819716 | 1.003403e-52 | -8.615850e-47 |
| Msa0993730 | Msa1005990 | 0.819739 | 9.913867e-53 | -8.615850e-47 |
| Msa0993750 | Msa1005990 | 0.815830 | 7.561425e-52 | -8.615850e-47 |
| Msa1005990 | Msa1013110 | 0.809332 | 1.994357e-50 | -8.615850e-47 |
| Msa1005990 | Msa1013400 | 0.818473 | 1.924392e-52 | -8.615850e-47 |
| Msa1005990 | Msa1019000 | 0.814681 | 1.361201e-51 | -8.615850e-47 |
| Msa1005990 | Msa1023920 | 0.802799 | 4.725551e-49 | -8.615850e-47 |
| Msa1005990 | Msa1035480 | 0.802216 | 6.232402e-49 | -8.615850e-47 |
| Msa1005990 | Msa1046280 | 0.808552 | 2.927654e-50 | -8.615850e-47 |
| Msa1005990 | Msa1048160 | 0.935798 | 4.806142e-97 | -8.615850e-47 |
| Msa1005990 | Msa1078170 | 0.813956 | 1.968258e-51 | -8.615850e-47 |
| Msa1005990 | Msa1081930 | 0.836721 | 7.924219e-57 | -8.615850e-47 |
| Msa1005990 | Msa1089460 | 0.803131 | 4.035164e-49 | -8.615850e-47 |
| Msa1005990 | Msa1093530 | 0.821507 | 3.891460e-53 | -8.615850e-47 |
| Msa1005990 | Msa1098400 | 0.800895 | 1.162800e-48 | -8.615850e-47 |
| Msa1005990 | Msa1100050 | 0.898800 | 3.718668e-77 | -8.615850e-47 |
| Msa1005990 | Msa1101090 | 0.813923 | 2.001936e-51 | -8.615850e-47 |
| Msa1005990 | Msa1107900 | 0.809479 | 1.853815e-50 | -8.615850e-47 |
| Msa1005990 | Msa1109680 | 0.813593 | 2.365850e-51 | -8.615850e-47 |
| Msa1005990 | Msa1128600 | 0.814711 | 1.340378e-51 | -8.615850e-47 |
| Msa1005990 | Msa1129550 | 0.812360 | 4.409572e-51 | -8.615850e-47 |
| Msa1005990 | Msa1129730 | 0.809751 | 1.620385e-50 | -8.615850e-47 |
| Msa1005990 | Msa1130980 | 0.803987 | 2.682017e-49 | -8.615850e-47 |
| Msa1005990 | Msa1135470 | 0.939562 | 1.030953e-99 | -8.615850e-47 |
| Msa1005990 | Msa1137570 | 0.811202 | 7.878747e-51 | -8.615850e-47 |
| Msa1005990 | Msa1162780 | 0.817124 | 3.879460e-52 | -8.615850e-47 |
| Msa1005990 | Msa1165940 | 0.824015 | 1.014806e-53 | -8.615850e-47 |
| Msa1005990 | Msa1173100 | 0.807004 | 6.245418e-50 | -8.615850e-47 |
| Msa1005990 | Msa1174040 | 0.808478 | 3.036557e-50 | -8.615850e-47 |
| Msa1005990 | Msa1190920 | 0.811798 | 5.846063e-51 | -8.615850e-47 |
| Msa1005990 | Msa1193290 | 0.813415 | 2.588939e-51 | -8.615850e-47 |
| Msa1005990 | Msa1199570 | 0.829430 | 5.169256e-55 | -8.615850e-47 |
| Msa1005990 | Msa1201560 | 0.803492 | 3.396827e-49 | -8.615850e-47 |
| Msa1005990 | Msa1219010 | 0.839913 | 1.192186e-57 | -8.615850e-47 |
| Msa1005990 | Msa1239410 | 0.802187 | 6.318532e-49 | -8.615850e-47 |
| Msa1005990 | Msa1250530 | 0.828127 | 1.068483e-54 | -8.615850e-47 |
| Msa1005990 | Msa1251160 | 0.814604 | 1.416024e-51 | -8.615850e-47 |
| Msa1005990 | Msa1253020 | 0.810877 | 9.262905e-51 | -8.615850e-47 |
| Msa1005990 | Msa1254730 | 0.806274 | 8.908460e-50 | -8.615850e-47 |
| Msa1005990 | Msa1279400 | 0.801859 | 7.381206e-49 | -8.615850e-47 |
| Msa1005990 | Msa1291450 | 0.818874 | 1.561013e-52 | -8.615850e-47 |
| Msa1005990 | Msa1294480 | 0.811800 | 5.840354e-51 | -8.615850e-47 |
| Msa1005990 | Msa1294820 | 0.824176 | 9.302288e-54 | -8.615850e-47 |
| Msa1005990 | Msa1314340 | 0.805186 | 1.507654e-49 | -8.615850e-47 |
| Msa1005990 | Msa1328710 | 0.835509 | 1.610403e-56 | -8.615850e-47 |
| Msa1005990 | Msa1331000 | 0.805462 | 1.319654e-49 | -8.615850e-47 |
| Msa1005990 | Msa1331320 | 0.812553 | 4.002112e-51 | -8.615850e-47 |
| Msa1005990 | Msa1336710 | 0.828244 | 1.001559e-54 | -8.615850e-47 |
| Msa1005990 | Msa1342900 | 0.800998 | 1.107683e-48 | -8.615850e-47 |
| Msa1005990 | Msa1351550 | 0.815485 | 9.026813e-52 | -8.615850e-47 |
| Msa1005990 | Msa1353470 | 0.837768 | 4.276402e-57 | -8.615850e-47 |
| Msa1005990 | Msa1358360 | 0.814658 | 1.377289e-51 | -8.615850e-47 |
| Msa1005990 | Msa1359040 | 0.803055 | 4.184130e-49 | -8.615850e-47 |
| Msa1005990 | Msa1361410 | 0.800767 | 1.234772e-48 | -8.615850e-47 |
| Msa1005990 | Msa1367590 | 0.822702 | 2.056069e-53 | -8.615850e-47 |
| Msa1005990 | Msa1370070 | -0.814121 | 1.810645e-51 | -8.615850e-47 |
| Msa1005990 | Msa1371640 | 0.800583 | 1.346642e-48 | -8.615850e-47 |
| Msa1005990 | Msa1374470 | 0.804347 | 2.256420e-49 | -8.615850e-47 |
| Msa1005990 | Msa1375840 | 0.816284 | 5.985746e-52 | -8.615850e-47 |
| Msa1005990 | Msa1377820 | 0.806350 | 8.583467e-50 | -8.615850e-47 |
| Msa1005990 | Msa1382560 | 0.801839 | 7.449363e-49 | -8.615850e-47 |
| Msa1005990 | Msa1392240 | 0.804679 | 1.924212e-49 | -8.615850e-47 |
| Msa1005990 | Msa1397120 | 0.806640 | 7.456568e-50 | -8.615850e-47 |
| Msa1005990 | Msa1398890 | 0.804353 | 2.250048e-49 | -8.615850e-47 |
| Msa1005990 | Msa1403890 | 0.803280 | 3.758406e-49 | -8.615850e-47 |
| Msa1005990 | Msa1406430 | 0.828528 | 8.553515e-55 | -8.615850e-47 |
| Msa1005990 | Msa1418340 | 0.802749 | 4.840085e-49 | -8.615850e-47 |
| Msa1005990 | Msa1424750 | 0.814027 | 1.898403e-51 | -8.615850e-47 |
| Msa1005990 | Msa1427230 | 0.806452 | 8.169358e-50 | -8.615850e-47 |
| Msa1005990 | Msa1433390 | 0.825157 | 5.462317e-54 | -8.615850e-47 |
| Msa1005990 | Msa1435270 | 0.828038 | 1.122799e-54 | -8.615850e-47 |
| Msa1005990 | Msa1440560 | 0.808514 | 2.982999e-50 | -8.615850e-47 |
| Msa1005990 | Msa1451160 | 0.822534 | 2.250254e-53 | -8.615850e-47 |
| Msa1005990 | Msa1454570 | 0.891770 | 2.932803e-74 | -8.615850e-47 |
| Msa1005990 | Msa1458680 | 0.800079 | 1.705361e-48 | -8.615850e-47 |
| Msa1005990 | Msa1466730 | 0.801363 | 9.327693e-49 | -8.615850e-47 |
| Msa0243090 | Msa1005990 | 0.829272 | 5.648849e-55 | -8.615850e-47 |
| Msa0245940 | Msa1005990 | 0.804459 | 2.138259e-49 | -8.615850e-47 |
| Msa0249200 | Msa1005990 | 0.801542 | 8.571050e-49 | -8.615850e-47 |
| Msa0254790 | Msa1005990 | 0.800068 | 1.714197e-48 | -8.615850e-47 |
| Msa0257460 | Msa1005990 | 0.820308 | 7.346300e-53 | -8.615850e-47 |
| Msa0267370 | Msa1005990 | 0.802607 | 5.178672e-49 | -8.615850e-47 |
| Msa0271530 | Msa1005990 | 0.802081 | 6.644688e-49 | -8.615850e-47 |
| Msa0278580 | Msa1005990 | 0.800545 | 1.370725e-48 | -8.615850e-47 |
| Msa0284520 | Msa1005990 | 0.802229 | 6.195317e-49 | -8.615850e-47 |
| Msa0287410 | Msa1005990 | 0.826776 | 2.253358e-54 | -8.615850e-47 |
| Msa0287870 | Msa1005990 | 0.801439 | 8.999467e-49 | -8.615850e-47 |
| Msa0305700 | Msa1005990 | 0.807052 | 6.101233e-50 | -8.615850e-47 |
| Msa0317960 | Msa1005990 | 0.800753 | 1.242915e-48 | -8.615850e-47 |
| Msa0319170 | Msa1005990 | 0.800822 | 1.203347e-48 | -8.615850e-47 |
| Msa0321080 | Msa1005990 | 0.808052 | 3.742110e-50 | -8.615850e-47 |
| Msa0326110 | Msa1005990 | 0.818511 | 1.886870e-52 | -8.615850e-47 |
| Msa0326480 | Msa1005990 | 0.804008 | 2.654188e-49 | -8.615850e-47 |
| Msa0339500 | Msa1005990 | 0.801139 | 1.036514e-48 | -8.615850e-47 |
| Msa0341540 | Msa1005990 | 0.817739 | 2.820552e-52 | -8.615850e-47 |
| Msa0359030 | Msa1005990 | 0.824991 | 5.979226e-54 | -8.615850e-47 |
| Msa0363790 | Msa1005990 | 0.831461 | 1.647886e-55 | -8.615850e-47 |
| Msa0512750 | Msa1005990 | 0.812238 | 4.688481e-51 | -8.615850e-47 |
| Msa0516170 | Msa1005990 | 0.814842 | 1.253726e-51 | -8.615850e-47 |
| Msa0524500 | Msa1005990 | 0.824875 | 6.367874e-54 | -8.615850e-47 |
| Msa0529890 | Msa1005990 | 0.813933 | 1.991723e-51 | -8.615850e-47 |
| Msa0551890 | Msa1005990 | 0.802452 | 5.573070e-49 | -8.615850e-47 |
| Msa0556060 | Msa1005990 | 0.807117 | 5.912582e-50 | -8.615850e-47 |
| Msa0557070 | Msa1005990 | 0.800261 | 1.565564e-48 | -8.615850e-47 |
| Msa0557320 | Msa1005990 | 0.803421 | 3.513634e-49 | -8.615850e-47 |
| Msa0564850 | Msa1005990 | 0.802888 | 4.529343e-49 | -8.615850e-47 |
| Msa0569200 | Msa1005990 | 0.810216 | 1.286898e-50 | -8.615850e-47 |
| Msa0578860 | Msa1005990 | 0.828421 | 9.076837e-55 | -8.615850e-47 |
| Msa0585560 | Msa1005990 | 0.816477 | 5.420004e-52 | -8.615850e-47 |
| Msa0849030 | Msa1005990 | 0.819883 | 9.193213e-53 | -8.615850e-47 |
| Msa0861090 | Msa1005990 | 0.801646 | 8.161011e-49 | -8.615850e-47 |
| Msa0861540 | Msa1005990 | 0.820288 | 7.424047e-53 | -8.615850e-47 |
| Msa0894930 | Msa1005990 | 0.813364 | 2.657778e-51 | -8.615850e-47 |
| Msa0902760 | Msa1005990 | 0.818603 | 1.798371e-52 | -8.615850e-47 |
| Msa0905730 | Msa1005990 | 0.802657 | 5.056122e-49 | -8.615850e-47 |
| Msa0924470 | Msa1005990 | 0.830487 | 2.857105e-55 | -8.615850e-47 |
| Msa0933100 | Msa1005990 | 0.806798 | 6.905583e-50 | -8.615850e-47 |
| Msa0936390 | Msa1005990 | 0.800401 | 1.466254e-48 | -8.615850e-47 |
| Msa0944060 | Msa1005990 | 0.802262 | 6.098862e-49 | -8.615850e-47 |
| Msa0958360 | Msa1005990 | 0.804148 | 2.482359e-49 | -8.615850e-47 |
| Msa0963270 | Msa1005990 | 0.829076 | 6.303281e-55 | -8.615850e-47 |
| Msa0969520 | Msa1005990 | 0.809821 | 1.565421e-50 | -8.615850e-47 |
| Msa0969810 | Msa1005990 | 0.804528 | 2.068690e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005990 | MtrunA17_Chr7g0216481 | 90.299 | 134 | 10 | 1 | 1 | 131 | 1 | 134 | 1.49e-79 | 230 |
| Msa1005990 | MtrunA17_Chr5g0415771 | 55.385 | 130 | 54 | 1 | 1 | 130 | 1 | 126 | 7.21e-41 | 132 |
| Msa1005990 | MtrunA17_Chr5g0415761 | 56.034 | 116 | 51 | 0 | 15 | 130 | 12 | 127 | 6.08e-39 | 127 |
| Msa1005990 | MtrunA17_Chr5g0415741 | 54.701 | 117 | 53 | 0 | 14 | 130 | 9 | 125 | 6.45e-39 | 127 |
| Msa1005990 | MtrunA17_Chr1g0155721 | 48.214 | 112 | 58 | 0 | 19 | 130 | 2 | 113 | 1.35e-38 | 126 |
| Msa1005990 | MtrunA17_Chr3g0142051 | 46.847 | 111 | 59 | 0 | 19 | 129 | 2 | 112 | 9.38e-36 | 119 |
| Msa1005990 | MtrunA17_Chr5g0404831 | 46.018 | 113 | 61 | 0 | 19 | 131 | 4 | 116 | 7.90e-35 | 117 |
| Msa1005990 | MtrunA17_Chr8g0393201 | 42.574 | 101 | 58 | 0 | 29 | 129 | 233 | 333 | 9.66e-27 | 101 |
| Msa1005990 | MtrunA17_Chr7g0245141 | 38.095 | 105 | 65 | 0 | 22 | 126 | 23 | 127 | 1.88e-25 | 93.6 |
| Msa1005990 | MtrunA17_Chr8g0334481 | 35.238 | 105 | 68 | 0 | 22 | 126 | 25 | 129 | 1.58e-24 | 91.3 |
| Msa1005990 | MtrunA17_Chr2g0280411 | 37.143 | 105 | 66 | 0 | 23 | 127 | 9 | 113 | 4.52e-24 | 89.7 |
| Msa1005990 | MtrunA17_Chr4g0042051 | 36.697 | 109 | 69 | 0 | 18 | 126 | 5 | 113 | 7.78e-24 | 89.4 |
| Msa1005990 | MtrunA17_Chr2g0319291 | 35.398 | 113 | 73 | 0 | 14 | 126 | 1 | 113 | 2.23e-23 | 87.8 |
| Msa1005990 | MtrunA17_Chr1g0201781 | 35.955 | 89 | 55 | 2 | 41 | 127 | 74 | 162 | 1.20e-18 | 77.0 |
| Msa1005990 | MtrunA17_Chr1g0211871 | 38.298 | 94 | 53 | 3 | 35 | 127 | 77 | 166 | 9.79e-18 | 75.1 |
| Msa1005990 | MtrunA17_Chr3g0125821 | 36.082 | 97 | 55 | 4 | 38 | 129 | 78 | 172 | 1.05e-17 | 74.7 |
| Msa1005990 | MtrunA17_Chr2g0317731 | 36.145 | 83 | 51 | 2 | 48 | 128 | 89 | 171 | 1.23e-16 | 72.0 |
| Msa1005990 | MtrunA17_Chr7g0264661 | 29.508 | 122 | 82 | 2 | 8 | 129 | 10 | 127 | 4.63e-16 | 69.3 |
| Msa1005990 | MtrunA17_Chr7g0249461 | 35.484 | 124 | 69 | 5 | 2 | 122 | 61 | 176 | 1.21e-15 | 69.7 |
| Msa1005990 | MtrunA17_Chr8g0360031 | 34.343 | 99 | 60 | 4 | 32 | 128 | 79 | 174 | 1.36e-15 | 69.3 |
| Msa1005990 | MtrunA17_Chr4g0052481 | 31.707 | 82 | 54 | 1 | 49 | 128 | 85 | 166 | 3.90e-15 | 67.8 |
| Msa1005990 | MtrunA17_Chr4g0044731 | 36.842 | 76 | 47 | 1 | 48 | 122 | 84 | 159 | 2.80e-14 | 65.9 |
| Msa1005990 | MtrunA17_Chr4g0047431 | 35.000 | 80 | 52 | 0 | 49 | 128 | 25 | 104 | 2.55e-12 | 62.4 |
| Msa1005990 | MtrunA17_Chr1g0173181 | 32.468 | 77 | 51 | 1 | 43 | 118 | 425 | 501 | 2.25e-11 | 59.7 |
| Msa1005990 | MtrunA17_Chr3g0142031 | 56.098 | 41 | 18 | 0 | 79 | 119 | 5 | 45 | 3.08e-11 | 54.7 |
| Msa1005990 | MtrunA17_Chr2g0317701 | 34.667 | 75 | 47 | 2 | 44 | 116 | 61 | 135 | 4.79e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005990 | AT5G39950.1 | 59.398 | 133 | 52 | 1 | 1 | 131 | 1 | 133 | 1.10e-56 | 173 |
| Msa1005990 | AT1G45145.1 | 52.475 | 101 | 48 | 0 | 29 | 129 | 11 | 111 | 9.20e-36 | 119 |
| Msa1005990 | AT3G51030.1 | 46.018 | 113 | 61 | 0 | 19 | 131 | 2 | 114 | 2.75e-34 | 115 |
| Msa1005990 | AT1G59730.1 | 42.748 | 131 | 71 | 2 | 1 | 130 | 1 | 128 | 6.75e-34 | 115 |
| Msa1005990 | AT1G19730.1 | 46.429 | 112 | 59 | 1 | 19 | 129 | 2 | 113 | 1.97e-33 | 113 |
| Msa1005990 | AT1G69880.1 | 51.546 | 97 | 47 | 0 | 33 | 129 | 47 | 143 | 3.07e-33 | 114 |
| Msa1005990 | AT5G42980.1 | 47.059 | 102 | 54 | 0 | 29 | 130 | 11 | 112 | 2.54e-31 | 108 |
| Msa1005990 | AT3G17880.2 | 40.000 | 105 | 63 | 0 | 25 | 129 | 265 | 369 | 1.01e-25 | 99.8 |
| Msa1005990 | AT3G17880.1 | 40.000 | 105 | 63 | 0 | 25 | 129 | 272 | 376 | 1.24e-25 | 99.8 |
| Msa1005990 | AT3G08710.2 | 39.062 | 128 | 74 | 2 | 1 | 126 | 1 | 126 | 2.19e-24 | 91.3 |
| Msa1005990 | AT3G08710.3 | 39.062 | 128 | 74 | 2 | 1 | 126 | 1 | 126 | 2.19e-24 | 91.3 |
| Msa1005990 | AT3G08710.1 | 39.062 | 128 | 74 | 2 | 1 | 126 | 1 | 126 | 2.19e-24 | 91.3 |
| Msa1005990 | AT3G56420.1 | 38.298 | 94 | 58 | 0 | 33 | 126 | 50 | 143 | 2.79e-24 | 91.7 |
| Msa1005990 | AT3G56420.2 | 38.298 | 94 | 58 | 0 | 33 | 126 | 50 | 143 | 2.79e-24 | 91.7 |
| Msa1005990 | AT3G56420.3 | 38.298 | 94 | 58 | 0 | 33 | 126 | 50 | 143 | 2.79e-24 | 91.7 |
| Msa1005990 | AT2G40790.2 | 38.298 | 94 | 58 | 0 | 33 | 126 | 50 | 143 | 1.34e-21 | 84.7 |
| Msa1005990 | AT2G40790.1 | 38.298 | 94 | 58 | 0 | 33 | 126 | 50 | 143 | 1.34e-21 | 84.7 |
| Msa1005990 | AT1G11530.1 | 38.144 | 97 | 60 | 0 | 30 | 126 | 9 | 105 | 2.50e-21 | 82.8 |
| Msa1005990 | AT1G43560.1 | 36.697 | 109 | 66 | 3 | 12 | 117 | 41 | 149 | 8.88e-20 | 80.1 |
| Msa1005990 | AT1G76760.1 | 39.744 | 78 | 46 | 1 | 41 | 117 | 77 | 154 | 6.54e-19 | 78.2 |
| Msa1005990 | AT1G50320.1 | 44.286 | 70 | 38 | 1 | 43 | 111 | 85 | 154 | 4.26e-17 | 73.6 |
| Msa1005990 | AT3G02730.1 | 36.782 | 87 | 54 | 1 | 46 | 131 | 88 | 174 | 6.01e-17 | 73.2 |
| Msa1005990 | AT3G15360.1 | 32.673 | 101 | 63 | 4 | 30 | 128 | 92 | 189 | 1.89e-16 | 72.4 |
| Msa1005990 | AT1G03680.1 | 36.145 | 83 | 51 | 2 | 48 | 128 | 95 | 177 | 5.65e-16 | 70.9 |
| Msa1005990 | AT4G03520.1 | 36.620 | 71 | 44 | 1 | 48 | 117 | 101 | 171 | 1.65e-15 | 69.7 |
| Msa1005990 | AT3G53220.1 | 26.549 | 113 | 81 | 1 | 17 | 129 | 15 | 125 | 1.65e-15 | 68.2 |
| Msa1005990 | AT1G31020.1 | 30.000 | 110 | 75 | 1 | 21 | 128 | 47 | 156 | 4.33e-15 | 67.8 |
| Msa1005990 | AT2G35010.2 | 34.146 | 82 | 52 | 1 | 49 | 128 | 110 | 191 | 4.97e-15 | 68.6 |
| Msa1005990 | AT2G35010.1 | 34.146 | 82 | 52 | 1 | 49 | 128 | 110 | 191 | 4.97e-15 | 68.6 |
| Msa1005990 | AT5G16400.1 | 32.184 | 87 | 58 | 1 | 46 | 131 | 98 | 184 | 1.71e-14 | 67.0 |
| Msa1005990 | AT4G04950.1 | 33.645 | 107 | 67 | 1 | 22 | 128 | 2 | 104 | 4.46e-14 | 67.8 |
| Msa1005990 | AT4G32580.1 | 31.868 | 91 | 62 | 0 | 38 | 128 | 14 | 104 | 4.68e-14 | 65.1 |
| Msa1005990 | AT1G52990.1 | 32.632 | 95 | 63 | 1 | 36 | 129 | 218 | 312 | 1.53e-13 | 65.9 |
| Msa1005990 | AT4G26160.1 | 32.292 | 96 | 61 | 2 | 38 | 129 | 105 | 200 | 2.32e-12 | 62.0 |
| Msa1005990 | AT2G41680.1 | 28.889 | 90 | 62 | 2 | 43 | 130 | 440 | 529 | 1.11e-11 | 61.2 |
Find 49 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATGTGGCACAAGAGTTTA+AGG | 0.257673 | 7_1:-4536096 | Msa1005990:CDS |
| ATGTAGAAAGTTAAGTTATA+TGG | 0.292169 | 7_1:+4535632 | None:intergenic |
| TGAAACCCTCTGTCCTGTTT+TGG | 0.295085 | 7_1:-4535689 | Msa1005990:three_prime_UTR |
| AAGCAAAATTGATATGTAAT+TGG | 0.301166 | 7_1:-4535784 | Msa1005990:three_prime_UTR |
| GTTGTATAATTTGAATTTGT+TGG | 0.301363 | 7_1:-4535873 | Msa1005990:three_prime_UTR |
| CTCACCAATATGACGTTCAT+TGG | 0.314737 | 7_1:-4535845 | Msa1005990:three_prime_UTR |
| GTTTCCAACGATTGATTCAT+AGG | 0.344164 | 7_1:-4535609 | Msa1005990:three_prime_UTR |
| AATCGATGTTGATGAATTAT+CGG | 0.348841 | 7_1:-4536736 | Msa1005990:intron |
| ATTGTCAATTGCAACTGTTT+TGG | 0.366693 | 7_1:-4535721 | Msa1005990:three_prime_UTR |
| CTATCCAATGAACGTCATAT+TGG | 0.381835 | 7_1:+4535841 | None:intergenic |
| TGTGGTTGACTTTACTTGCT+TGG | 0.384738 | 7_1:+4537134 | None:intergenic |
| AAAGAGGTTGATAAGGTTGT+TGG | 0.418770 | 7_1:-4536035 | Msa1005990:CDS |
| GACAAAGAAGACTCCAAAAC+AGG | 0.433535 | 7_1:+4535676 | None:intergenic |
| CTTCTTTGTCACTTGTTTCG+CGG | 0.436751 | 7_1:-4535663 | Msa1005990:three_prime_UTR |
| GCTGTCTTTGTGCTGAATGT+TGG | 0.441277 | 7_1:+4537102 | None:intergenic |
| TTAGCCATGGCTTGAAGAAT+CGG | 0.442279 | 7_1:+4536786 | None:intergenic |
| CGTTTGTGTTGTTGAAGAAT+GGG | 0.453169 | 7_1:-4536058 | Msa1005990:CDS |
| TTGTATAATTTGAATTTGTT+GGG | 0.455935 | 7_1:-4535872 | Msa1005990:three_prime_UTR |
| ACGTTTGTGTTGTTGAAGAA+TGG | 0.456074 | 7_1:-4536059 | Msa1005990:CDS |
| TTCTCCTCCTTAGTCGGCAG+TGG | 0.459284 | 7_1:-4537066 | Msa1005990:CDS |
| TAAGGTTGTTGGAGCAAAGA+AGG | 0.462298 | 7_1:-4536024 | Msa1005990:CDS |
| TACGGGGCCACTGCCGACTA+AGG | 0.463959 | 7_1:+4537059 | None:intergenic |
| TTCAGCACAAAGACAGCAAT+GGG | 0.470933 | 7_1:-4537096 | Msa1005990:exon |
| TGATTGATTTCTCTGCTACA+TGG | 0.471205 | 7_1:-4536833 | Msa1005990:CDS |
| TGATGATTCTGATGACTGTA+CGG | 0.487264 | 7_1:+4537041 | None:intergenic |
| GAATGGGAAAGAGGTTGATA+AGG | 0.491854 | 7_1:-4536042 | Msa1005990:CDS |
| GATGATTCTGATGACTGTAC+GGG | 0.500909 | 7_1:+4537042 | None:intergenic |
| GATTTCTCTGCTACATGGTG+TGG | 0.519111 | 7_1:-4536828 | Msa1005990:CDS |
| TTGACCTATGAATCAATCGT+TGG | 0.520994 | 7_1:+4535605 | None:intergenic |
| TTATAAAGATACATGTCATA+AGG | 0.526271 | 7_1:-4537165 | Msa1005990:five_prime_UTR |
| ATCAGTGAATTCATTAGCCA+TGG | 0.533887 | 7_1:+4536773 | None:intergenic |
| GTGTGGACCTTGTAAAATGA+TGG | 0.541235 | 7_1:-4536811 | Msa1005990:CDS |
| CCTTCCACTCATCTGCTCGC+TGG | 0.549073 | 7_1:-4536999 | Msa1005990:CDS |
| GTTGTTGAAGAATGGGAAAG+AGG | 0.553595 | 7_1:-4536051 | Msa1005990:CDS |
| AGATGAGTGGAAGGTCTTGA+CGG | 0.570930 | 7_1:+4537008 | None:intergenic |
| GAATGTTGGAGTTGTTCTTG+TGG | 0.588851 | 7_1:+4537116 | None:intergenic |
| GGGGCCACTGCCGACTAAGG+AGG | 0.594415 | 7_1:+4537062 | None:intergenic |
| GTTGCCAGCGAGCAGATGAG+TGG | 0.605035 | 7_1:+4536995 | None:intergenic |
| TTCTTCAACAACACAAACGT+TGG | 0.610426 | 7_1:+4536062 | None:intergenic |
| ATTCAGCACAAAGACAGCAA+TGG | 0.613497 | 7_1:-4537097 | Msa1005990:exon |
| AGACTCCAAAACAGGACAGA+GGG | 0.617670 | 7_1:+4535684 | None:intergenic |
| CCAGCGAGCAGATGAGTGGA+AGG | 0.627549 | 7_1:+4536999 | None:intergenic |
| GGAACCGATTCTTCAAGCCA+TGG | 0.630372 | 7_1:-4536790 | Msa1005990:CDS |
| ATGATACTGTGAATGTGATG+TGG | 0.634907 | 7_1:-4535745 | Msa1005990:three_prime_UTR |
| TGAGTATAATCTTATCACCA+TGG | 0.657251 | 7_1:-4535909 | Msa1005990:three_prime_UTR |
| ACTTTGAGCAGATATGATGT+GGG | 0.676948 | 7_1:+4535572 | None:intergenic |
| CAACTTTATCATCATCACCA+TGG | 0.681834 | 7_1:+4535892 | None:intergenic |
| AAGACTCCAAAACAGGACAG+AGG | 0.709414 | 7_1:+4535683 | None:intergenic |
| ATGATTCTGATGACTGTACG+GGG | 0.715538 | 7_1:+4537043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATGTTATTTGTTAAAA+TGG | - | chr7_1:4536187-4536206 | Msa1005990:intron | 10.0% |
| !!! | TCATTTTTACAAATTATTAT+CGG | - | chr7_1:4536544-4536563 | Msa1005990:intron | 10.0% |
| !!! | AATTATGTTATTTGTTAAAA+TGG | - | chr7_1:4536187-4536206 | Msa1005990:intron | 10.0% |
| !!! | TCATTTTTACAAATTATTAT+CGG | - | chr7_1:4536544-4536563 | Msa1005990:intron | 10.0% |
| !! | CCAAAAAATAGAAAAATAAA+TGG | + | chr7_1:4535852-4535871 | None:intergenic | 15.0% |
| !!! | CCATTTATTTTTCTATTTTT+TGG | - | chr7_1:4535849-4535868 | Msa1005990:three_prime_UTR | 15.0% |
| !!! | ATTGTATGTTATTTTTTTGA+GGG | - | chr7_1:4536160-4536179 | Msa1005990:intron | 15.0% |
| !!! | AATTATACAAAAAGCATTTA+AGG | - | chr7_1:4536318-4536337 | Msa1005990:intron | 15.0% |
| !!! | TGATAATGGTAAATTTTAAA+AGG | + | chr7_1:4536363-4536382 | None:intergenic | 15.0% |
| !!! | ATAATGATTTAATTTTTGTG+TGG | - | chr7_1:4536611-4536630 | Msa1005990:intron | 15.0% |
| !!! | TTGTATAATTTGAATTTGTT+GGG | - | chr7_1:4536877-4536896 | Msa1005990:intron | 15.0% |
| !! | CCAAAAAATAGAAAAATAAA+TGG | + | chr7_1:4535852-4535871 | None:intergenic | 15.0% |
| !!! | CCATTTATTTTTCTATTTTT+TGG | - | chr7_1:4535849-4535868 | Msa1005990:three_prime_UTR | 15.0% |
| !!! | ATTGTATGTTATTTTTTTGA+GGG | - | chr7_1:4536160-4536179 | Msa1005990:intron | 15.0% |
| !!! | AATTATACAAAAAGCATTTA+AGG | - | chr7_1:4536318-4536337 | Msa1005990:intron | 15.0% |
| !!! | TGATAATGGTAAATTTTAAA+AGG | + | chr7_1:4536363-4536382 | None:intergenic | 15.0% |
| !!! | ATAATGATTTAATTTTTGTG+TGG | - | chr7_1:4536611-4536630 | Msa1005990:intron | 15.0% |
| !!! | TTGTATAATTTGAATTTGTT+GGG | - | chr7_1:4536877-4536896 | Msa1005990:intron | 15.0% |
| !!! | CATTGTATGTTATTTTTTTG+AGG | - | chr7_1:4536159-4536178 | Msa1005990:intron | 20.0% |
| !!! | ATGTTATTTGTTAAAATGGA+TGG | - | chr7_1:4536191-4536210 | Msa1005990:intron | 20.0% |
| !!! | AACTAAAAATACATTTTTGC+CGG | - | chr7_1:4536254-4536273 | Msa1005990:intron | 20.0% |
| !!! | ATTTTAAAAGGAAAAAGGTT+AGG | + | chr7_1:4536351-4536370 | None:intergenic | 20.0% |
| !!! | GGTAAATTTTAAAAGGAAAA+AGG | + | chr7_1:4536356-4536375 | None:intergenic | 20.0% |
| !!! | TTAATTTTTGTGTGGTTTTT+TGG | - | chr7_1:4536619-4536638 | Msa1005990:intron | 20.0% |
| !! | GTTGTATAATTTGAATTTGT+TGG | - | chr7_1:4536876-4536895 | Msa1005990:intron | 20.0% |
| !! | AAGCAAAATTGATATGTAAT+TGG | - | chr7_1:4536965-4536984 | Msa1005990:CDS | 20.0% |
| !! | ATGTAGAAAGTTAAGTTATA+TGG | + | chr7_1:4537120-4537139 | None:intergenic | 20.0% |
| !!! | CATTGTATGTTATTTTTTTG+AGG | - | chr7_1:4536159-4536178 | Msa1005990:intron | 20.0% |
| !!! | ATGTTATTTGTTAAAATGGA+TGG | - | chr7_1:4536191-4536210 | Msa1005990:intron | 20.0% |
| !!! | AACTAAAAATACATTTTTGC+CGG | - | chr7_1:4536254-4536273 | Msa1005990:intron | 20.0% |
| !!! | ATTTTAAAAGGAAAAAGGTT+AGG | + | chr7_1:4536351-4536370 | None:intergenic | 20.0% |
| !!! | GGTAAATTTTAAAAGGAAAA+AGG | + | chr7_1:4536356-4536375 | None:intergenic | 20.0% |
| !!! | TTAATTTTTGTGTGGTTTTT+TGG | - | chr7_1:4536619-4536638 | Msa1005990:intron | 20.0% |
| !! | GTTGTATAATTTGAATTTGT+TGG | - | chr7_1:4536876-4536895 | Msa1005990:intron | 20.0% |
| !! | AAGCAAAATTGATATGTAAT+TGG | - | chr7_1:4536965-4536984 | Msa1005990:CDS | 20.0% |
| !! | ATGTAGAAAGTTAAGTTATA+TGG | + | chr7_1:4537120-4537139 | None:intergenic | 20.0% |
| ! | ATTGAGATCTAAAGAGATAT+GGG | + | chr7_1:4535821-4535840 | None:intergenic | 25.0% |
| ! | TATTGAGATCTAAAGAGATA+TGG | + | chr7_1:4535822-4535841 | None:intergenic | 25.0% |
| !!! | TTTTGATTTTCTGTTTGTGA+AGG | - | chr7_1:4535890-4535909 | Msa1005990:three_prime_UTR | 25.0% |
| !! | AATCGATGTTGATGAATTAT+CGG | - | chr7_1:4536013-4536032 | Msa1005990:CDS | 25.0% |
| ! | ACAGTATAGTTGATCAAATT+GGG | + | chr7_1:4536052-4536071 | None:intergenic | 25.0% |
| ! | AACAGTATAGTTGATCAAAT+TGG | + | chr7_1:4536053-4536072 | None:intergenic | 25.0% |
| ! | TTCTCAAAGTTTATTATAGC+CGG | + | chr7_1:4536276-4536295 | None:intergenic | 25.0% |
| !! | ACCATATTTTACTTACTTGA+CGG | + | chr7_1:4536404-4536423 | None:intergenic | 25.0% |
| ! | CAAATAATAACACATCGAAT+CGG | + | chr7_1:4536443-4536462 | None:intergenic | 25.0% |
| ! | ATTGAGATCTAAAGAGATAT+GGG | + | chr7_1:4535821-4535840 | None:intergenic | 25.0% |
| ! | TATTGAGATCTAAAGAGATA+TGG | + | chr7_1:4535822-4535841 | None:intergenic | 25.0% |
| !!! | TTTTGATTTTCTGTTTGTGA+AGG | - | chr7_1:4535890-4535909 | Msa1005990:three_prime_UTR | 25.0% |
| !! | AATCGATGTTGATGAATTAT+CGG | - | chr7_1:4536013-4536032 | Msa1005990:CDS | 25.0% |
| ! | ACAGTATAGTTGATCAAATT+GGG | + | chr7_1:4536052-4536071 | None:intergenic | 25.0% |
| ! | AACAGTATAGTTGATCAAAT+TGG | + | chr7_1:4536053-4536072 | None:intergenic | 25.0% |
| ! | TTCTCAAAGTTTATTATAGC+CGG | + | chr7_1:4536276-4536295 | None:intergenic | 25.0% |
| !! | ACCATATTTTACTTACTTGA+CGG | + | chr7_1:4536404-4536423 | None:intergenic | 25.0% |
| ! | CAAATAATAACACATCGAAT+CGG | + | chr7_1:4536443-4536462 | None:intergenic | 25.0% |
| ! | TTCTTTAGATGTTTTTCGTG+TGG | - | chr7_1:4536226-4536245 | Msa1005990:intron | 30.0% |
| TTAAAAGGAAAAAGGTTAGG+TGG | + | chr7_1:4536348-4536367 | None:intergenic | 30.0% | |
| ACCGTCAAGTAAGTAAAATA+TGG | - | chr7_1:4536400-4536419 | Msa1005990:intron | 30.0% | |
| AGAAGCAATAACAACACATA+TGG | + | chr7_1:4536581-4536600 | None:intergenic | 30.0% | |
| !! | ATTTTTGTGTGGTTTTTTGG+TGG | - | chr7_1:4536622-4536641 | Msa1005990:intron | 30.0% |
| !! | TTTTTGTGTGGTTTTTTGGT+GGG | - | chr7_1:4536623-4536642 | Msa1005990:intron | 30.0% |
| GAAGGATGAACTTAAAAACA+AGG | - | chr7_1:4536743-4536762 | Msa1005990:CDS | 30.0% | |
| TGAGTATAATCTTATCACCA+TGG | - | chr7_1:4536840-4536859 | Msa1005990:CDS | 30.0% | |
| ! | ATTGTCAATTGCAACTGTTT+TGG | - | chr7_1:4537028-4537047 | Msa1005990:CDS | 30.0% |
| ! | TTCTTTAGATGTTTTTCGTG+TGG | - | chr7_1:4536226-4536245 | Msa1005990:intron | 30.0% |
| TTAAAAGGAAAAAGGTTAGG+TGG | + | chr7_1:4536348-4536367 | None:intergenic | 30.0% | |
| ACCGTCAAGTAAGTAAAATA+TGG | - | chr7_1:4536400-4536419 | Msa1005990:intron | 30.0% | |
| AGAAGCAATAACAACACATA+TGG | + | chr7_1:4536581-4536600 | None:intergenic | 30.0% | |
| !! | ATTTTTGTGTGGTTTTTTGG+TGG | - | chr7_1:4536622-4536641 | Msa1005990:intron | 30.0% |
| !! | TTTTTGTGTGGTTTTTTGGT+GGG | - | chr7_1:4536623-4536642 | Msa1005990:intron | 30.0% |
| GAAGGATGAACTTAAAAACA+AGG | - | chr7_1:4536743-4536762 | Msa1005990:CDS | 30.0% | |
| TGAGTATAATCTTATCACCA+TGG | - | chr7_1:4536840-4536859 | Msa1005990:CDS | 30.0% | |
| ! | ATTGTCAATTGCAACTGTTT+TGG | - | chr7_1:4537028-4537047 | Msa1005990:CDS | 30.0% |
| !! | TCATTTTTCTCCTCCTTAGT+CGG | - | chr7_1:4535677-4535696 | Msa1005990:three_prime_UTR | 35.0% |
| TGATGATTCTGATGACTGTA+CGG | + | chr7_1:4535711-4535730 | None:intergenic | 35.0% | |
| ! | TGATTTTCTGTTTGTGAAGG+TGG | - | chr7_1:4535893-4535912 | Msa1005990:three_prime_UTR | 35.0% |
| ! | TGATTGATTTCTCTGCTACA+TGG | - | chr7_1:4535916-4535935 | Msa1005990:three_prime_UTR | 35.0% |
| !! | ATCGGTTCCATCATTTTACA+AGG | + | chr7_1:4535948-4535967 | None:intergenic | 35.0% |
| ATCAGTGAATTCATTAGCCA+TGG | + | chr7_1:4535979-4535998 | None:intergenic | 35.0% | |
| !!! | AATTTTTAGCACCGACACTT+CGG | - | chr7_1:4536087-4536106 | Msa1005990:CDS | 35.0% |
| !!! | GGTTTTTTGGTGGGAATTAT+AGG | - | chr7_1:4536632-4536651 | Msa1005990:intron | 35.0% |
| TTCTTCAACAACACAAACGT+TGG | + | chr7_1:4536690-4536709 | None:intergenic | 35.0% | |
| ! | ACGTTTGTGTTGTTGAAGAA+TGG | - | chr7_1:4536690-4536709 | Msa1005990:intron | 35.0% |
| ! | CGTTTGTGTTGTTGAAGAAT+GGG | - | chr7_1:4536691-4536710 | Msa1005990:intron | 35.0% |
| !! | AAAGAGGTTGATAAGGTTGT+TGG | - | chr7_1:4536714-4536733 | Msa1005990:intron | 35.0% |
| CAACTTTATCATCATCACCA+TGG | + | chr7_1:4536860-4536879 | None:intergenic | 35.0% | |
| CTATCCAATGAACGTCATAT+TGG | + | chr7_1:4536911-4536930 | None:intergenic | 35.0% | |
| ATGATACTGTGAATGTGATG+TGG | - | chr7_1:4537004-4537023 | Msa1005990:CDS | 35.0% | |
| !!! | TTGCAACTGTTTTGGAGTTT+AGG | - | chr7_1:4537036-4537055 | Msa1005990:CDS | 35.0% |
| ! | GTTTCCAACGATTGATTCAT+AGG | - | chr7_1:4537140-4537159 | Msa1005990:five_prime_UTR | 35.0% |
| TTGACCTATGAATCAATCGT+TGG | + | chr7_1:4537147-4537166 | None:intergenic | 35.0% | |
| !! | TCATTTTTCTCCTCCTTAGT+CGG | - | chr7_1:4535677-4535696 | Msa1005990:three_prime_UTR | 35.0% |
| TGATGATTCTGATGACTGTA+CGG | + | chr7_1:4535711-4535730 | None:intergenic | 35.0% | |
| ! | TGATTTTCTGTTTGTGAAGG+TGG | - | chr7_1:4535893-4535912 | Msa1005990:three_prime_UTR | 35.0% |
| ! | TGATTGATTTCTCTGCTACA+TGG | - | chr7_1:4535916-4535935 | Msa1005990:three_prime_UTR | 35.0% |
| !! | ATCGGTTCCATCATTTTACA+AGG | + | chr7_1:4535948-4535967 | None:intergenic | 35.0% |
| ATCAGTGAATTCATTAGCCA+TGG | + | chr7_1:4535979-4535998 | None:intergenic | 35.0% | |
| !!! | AATTTTTAGCACCGACACTT+CGG | - | chr7_1:4536087-4536106 | Msa1005990:CDS | 35.0% |
| !!! | GGTTTTTTGGTGGGAATTAT+AGG | - | chr7_1:4536632-4536651 | Msa1005990:intron | 35.0% |
| TTCTTCAACAACACAAACGT+TGG | + | chr7_1:4536690-4536709 | None:intergenic | 35.0% | |
| ! | ACGTTTGTGTTGTTGAAGAA+TGG | - | chr7_1:4536690-4536709 | Msa1005990:intron | 35.0% |
| ! | CGTTTGTGTTGTTGAAGAAT+GGG | - | chr7_1:4536691-4536710 | Msa1005990:intron | 35.0% |
| !! | AAAGAGGTTGATAAGGTTGT+TGG | - | chr7_1:4536714-4536733 | Msa1005990:intron | 35.0% |
| CAACTTTATCATCATCACCA+TGG | + | chr7_1:4536860-4536879 | None:intergenic | 35.0% | |
| CTATCCAATGAACGTCATAT+TGG | + | chr7_1:4536911-4536930 | None:intergenic | 35.0% | |
| ATGATACTGTGAATGTGATG+TGG | - | chr7_1:4537004-4537023 | Msa1005990:CDS | 35.0% | |
| !!! | TTGCAACTGTTTTGGAGTTT+AGG | - | chr7_1:4537036-4537055 | Msa1005990:CDS | 35.0% |
| ! | GTTTCCAACGATTGATTCAT+AGG | - | chr7_1:4537140-4537159 | Msa1005990:five_prime_UTR | 35.0% |
| TTGACCTATGAATCAATCGT+TGG | + | chr7_1:4537147-4537166 | None:intergenic | 35.0% | |
| ! | TGTGGTTGACTTTACTTGCT+TGG | + | chr7_1:4535618-4535637 | None:intergenic | 40.0% |
| GAATGTTGGAGTTGTTCTTG+TGG | + | chr7_1:4535636-4535655 | None:intergenic | 40.0% | |
| ATTCAGCACAAAGACAGCAA+TGG | - | chr7_1:4535652-4535671 | Msa1005990:three_prime_UTR | 40.0% | |
| TTCAGCACAAAGACAGCAAT+GGG | - | chr7_1:4535653-4535672 | Msa1005990:three_prime_UTR | 40.0% | |
| ATGATTCTGATGACTGTACG+GGG | + | chr7_1:4535709-4535728 | None:intergenic | 40.0% | |
| GATGATTCTGATGACTGTAC+GGG | + | chr7_1:4535710-4535729 | None:intergenic | 40.0% | |
| GTGTGGACCTTGTAAAATGA+TGG | - | chr7_1:4535938-4535957 | Msa1005990:three_prime_UTR | 40.0% | |
| TTAGCCATGGCTTGAAGAAT+CGG | + | chr7_1:4535966-4535985 | None:intergenic | 40.0% | |
| ACACGGACAAGACATGATAA+TGG | + | chr7_1:4536377-4536396 | None:intergenic | 40.0% | |
| ACTTACTTGACGGTCTAACA+CGG | + | chr7_1:4536394-4536413 | None:intergenic | 40.0% | |
| TTGGTGGGAATTATAGGATG+TGG | - | chr7_1:4536638-4536657 | Msa1005990:intron | 40.0% | |
| GTTGTTGAAGAATGGGAAAG+AGG | - | chr7_1:4536698-4536717 | Msa1005990:intron | 40.0% | |
| !! | GAATGGGAAAGAGGTTGATA+AGG | - | chr7_1:4536707-4536726 | Msa1005990:intron | 40.0% |
| TAAGGTTGTTGGAGCAAAGA+AGG | - | chr7_1:4536725-4536744 | Msa1005990:intron | 40.0% | |
| CTCACCAATATGACGTTCAT+TGG | - | chr7_1:4536904-4536923 | Msa1005990:intron | 40.0% | |
| GACAAAGAAGACTCCAAAAC+AGG | + | chr7_1:4537076-4537095 | None:intergenic | 40.0% | |
| ! | CTTCTTTGTCACTTGTTTCG+CGG | - | chr7_1:4537086-4537105 | Msa1005990:exon | 40.0% |
| ! | TGTGGTTGACTTTACTTGCT+TGG | + | chr7_1:4535618-4535637 | None:intergenic | 40.0% |
| GAATGTTGGAGTTGTTCTTG+TGG | + | chr7_1:4535636-4535655 | None:intergenic | 40.0% | |
| ATTCAGCACAAAGACAGCAA+TGG | - | chr7_1:4535652-4535671 | Msa1005990:three_prime_UTR | 40.0% | |
| TTCAGCACAAAGACAGCAAT+GGG | - | chr7_1:4535653-4535672 | Msa1005990:three_prime_UTR | 40.0% | |
| ATGATTCTGATGACTGTACG+GGG | + | chr7_1:4535709-4535728 | None:intergenic | 40.0% | |
| GATGATTCTGATGACTGTAC+GGG | + | chr7_1:4535710-4535729 | None:intergenic | 40.0% | |
| GTGTGGACCTTGTAAAATGA+TGG | - | chr7_1:4535938-4535957 | Msa1005990:three_prime_UTR | 40.0% | |
| TTAGCCATGGCTTGAAGAAT+CGG | + | chr7_1:4535966-4535985 | None:intergenic | 40.0% | |
| ACACGGACAAGACATGATAA+TGG | + | chr7_1:4536377-4536396 | None:intergenic | 40.0% | |
| ACTTACTTGACGGTCTAACA+CGG | + | chr7_1:4536394-4536413 | None:intergenic | 40.0% | |
| TTGGTGGGAATTATAGGATG+TGG | - | chr7_1:4536638-4536657 | Msa1005990:intron | 40.0% | |
| GTTGTTGAAGAATGGGAAAG+AGG | - | chr7_1:4536698-4536717 | Msa1005990:intron | 40.0% | |
| !! | GAATGGGAAAGAGGTTGATA+AGG | - | chr7_1:4536707-4536726 | Msa1005990:intron | 40.0% |
| TAAGGTTGTTGGAGCAAAGA+AGG | - | chr7_1:4536725-4536744 | Msa1005990:intron | 40.0% | |
| CTCACCAATATGACGTTCAT+TGG | - | chr7_1:4536904-4536923 | Msa1005990:intron | 40.0% | |
| GACAAAGAAGACTCCAAAAC+AGG | + | chr7_1:4537076-4537095 | None:intergenic | 40.0% | |
| ! | CTTCTTTGTCACTTGTTTCG+CGG | - | chr7_1:4537086-4537105 | Msa1005990:exon | 40.0% |
| GCTGTCTTTGTGCTGAATGT+TGG | + | chr7_1:4535650-4535669 | None:intergenic | 45.0% | |
| AGATGAGTGGAAGGTCTTGA+CGG | + | chr7_1:4535744-4535763 | None:intergenic | 45.0% | |
| ! | GATATGGGTTTTACGAGACG+AGG | + | chr7_1:4535806-4535825 | None:intergenic | 45.0% |
| GATTTCTCTGCTACATGGTG+TGG | - | chr7_1:4535921-4535940 | Msa1005990:three_prime_UTR | 45.0% | |
| AAACCCTCTATCCGAAGTGT+CGG | + | chr7_1:4536101-4536120 | None:intergenic | 45.0% | |
| GGATGTGGCACAAGAGTTTA+AGG | - | chr7_1:4536653-4536672 | Msa1005990:intron | 45.0% | |
| ! | TGAAACCCTCTGTCCTGTTT+TGG | - | chr7_1:4537060-4537079 | Msa1005990:CDS | 45.0% |
| AGACTCCAAAACAGGACAGA+GGG | + | chr7_1:4537068-4537087 | None:intergenic | 45.0% | |
| AAGACTCCAAAACAGGACAG+AGG | + | chr7_1:4537069-4537088 | None:intergenic | 45.0% | |
| GCTGTCTTTGTGCTGAATGT+TGG | + | chr7_1:4535650-4535669 | None:intergenic | 45.0% | |
| AGATGAGTGGAAGGTCTTGA+CGG | + | chr7_1:4535744-4535763 | None:intergenic | 45.0% | |
| ! | GATATGGGTTTTACGAGACG+AGG | + | chr7_1:4535806-4535825 | None:intergenic | 45.0% |
| GATTTCTCTGCTACATGGTG+TGG | - | chr7_1:4535921-4535940 | Msa1005990:three_prime_UTR | 45.0% | |
| AAACCCTCTATCCGAAGTGT+CGG | + | chr7_1:4536101-4536120 | None:intergenic | 45.0% | |
| GGATGTGGCACAAGAGTTTA+AGG | - | chr7_1:4536653-4536672 | Msa1005990:intron | 45.0% | |
| ! | TGAAACCCTCTGTCCTGTTT+TGG | - | chr7_1:4537060-4537079 | Msa1005990:CDS | 45.0% |
| AGACTCCAAAACAGGACAGA+GGG | + | chr7_1:4537068-4537087 | None:intergenic | 45.0% | |
| AAGACTCCAAAACAGGACAG+AGG | + | chr7_1:4537069-4537088 | None:intergenic | 45.0% | |
| ! | GGAACCGATTCTTCAAGCCA+TGG | - | chr7_1:4535959-4535978 | Msa1005990:three_prime_UTR | 50.0% |
| ! | GGAACCGATTCTTCAAGCCA+TGG | - | chr7_1:4535959-4535978 | Msa1005990:three_prime_UTR | 50.0% |
| TTCTCCTCCTTAGTCGGCAG+TGG | - | chr7_1:4535683-4535702 | Msa1005990:three_prime_UTR | 55.0% | |
| !! | AGCACCGACACTTCGGATAG+AGG | - | chr7_1:4536094-4536113 | Msa1005990:CDS | 55.0% |
| ! | GCACCGACACTTCGGATAGA+GGG | - | chr7_1:4536095-4536114 | Msa1005990:CDS | 55.0% |
| TTCTCCTCCTTAGTCGGCAG+TGG | - | chr7_1:4535683-4535702 | Msa1005990:three_prime_UTR | 55.0% | |
| !! | AGCACCGACACTTCGGATAG+AGG | - | chr7_1:4536094-4536113 | Msa1005990:CDS | 55.0% |
| ! | GCACCGACACTTCGGATAGA+GGG | - | chr7_1:4536095-4536114 | Msa1005990:CDS | 55.0% |
| CCAGCGAGCAGATGAGTGGA+AGG | + | chr7_1:4535753-4535772 | None:intergenic | 60.0% | |
| CCTTCCACTCATCTGCTCGC+TGG | - | chr7_1:4535750-4535769 | Msa1005990:three_prime_UTR | 60.0% | |
| GTTGCCAGCGAGCAGATGAG+TGG | + | chr7_1:4535757-4535776 | None:intergenic | 60.0% | |
| CCAGCGAGCAGATGAGTGGA+AGG | + | chr7_1:4535753-4535772 | None:intergenic | 60.0% | |
| CCTTCCACTCATCTGCTCGC+TGG | - | chr7_1:4535750-4535769 | Msa1005990:three_prime_UTR | 60.0% | |
| GTTGCCAGCGAGCAGATGAG+TGG | + | chr7_1:4535757-4535776 | None:intergenic | 60.0% | |
| ! | TACGGGGCCACTGCCGACTA+AGG | + | chr7_1:4535693-4535712 | None:intergenic | 65.0% |
| ! | TACGGGGCCACTGCCGACTA+AGG | + | chr7_1:4535693-4535712 | None:intergenic | 65.0% |
| ! | GGGGCCACTGCCGACTAAGG+AGG | + | chr7_1:4535690-4535709 | None:intergenic | 70.0% |
| ! | GGGGCCACTGCCGACTAAGG+AGG | + | chr7_1:4535690-4535709 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 4535587 | 4537184 | 4535587 | ID=Msa1005990;Name=Msa1005990 |
| chr7_1 | mRNA | 4535587 | 4537184 | 4535587 | ID=Msa1005990-mRNA-1;Parent=Msa1005990;Name=Msa1005990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|3|399|131 |
| chr7_1 | exon | 4535587 | 4536117 | 4535587 | ID=Msa1005990-mRNA-1:exon:1536;Parent=Msa1005990-mRNA-1 |
| chr7_1 | exon | 4536737 | 4536859 | 4536737 | ID=Msa1005990-mRNA-1:exon:1535;Parent=Msa1005990-mRNA-1 |
| chr7_1 | exon | 4536960 | 4537184 | 4536960 | ID=Msa1005990-mRNA-1:exon:1534;Parent=Msa1005990-mRNA-1 |
| chr7_1 | five_prime_UTR | 4537101 | 4537184 | 4537101 | ID=Msa1005990-mRNA-1:five_prime_utr;Parent=Msa1005990-mRNA-1 |
| chr7_1 | CDS | 4536960 | 4537100 | 4536960 | ID=Msa1005990-mRNA-1:cds;Parent=Msa1005990-mRNA-1 |
| chr7_1 | CDS | 4536737 | 4536859 | 4536737 | ID=Msa1005990-mRNA-1:cds;Parent=Msa1005990-mRNA-1 |
| chr7_1 | CDS | 4535986 | 4536117 | 4535986 | ID=Msa1005990-mRNA-1:cds;Parent=Msa1005990-mRNA-1 |
| chr7_1 | three_prime_UTR | 4535587 | 4535985 | 4535587 | ID=Msa1005990-mRNA-1:three_prime_utr;Parent=Msa1005990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
