AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0849030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0849030 MtrunA17_Chr5g0422991 70.000 120 6 1 1 90 1 120 3.71e-49 151
Msa0849030 MtrunA17_Chr1g0210031 64.865 74 22 2 18 88 48 120 1.02e-24 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 26 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGATAATAAGGTGATTT+TGG 0.110746 5_4:+35250797 None:intergenic
TTATTATCAAGGAAATTATT+TGG 0.211652 5_4:-35250786 Msa0849030:three_prime_UTR
AAATAATTTCCTTGATAATA+AGG 0.225833 5_4:+35250788 None:intergenic
TAATGTCAATAACCCTCTTT+TGG 0.320029 5_4:+35255411 None:intergenic
GGAAATTATTTGGCGATATC+CGG 0.373714 5_4:-35250776 Msa0849030:three_prime_UTR
CCAAAATCACCTTATTATCA+AGG 0.376723 5_4:-35250797 Msa0849030:three_prime_UTR
GGCAAATTATTCCCATCAAC+AGG 0.420406 5_4:-35251096 Msa0849030:CDS
AGGCAGAGGATTCCTGTTGA+TGG 0.425176 5_4:+35251084 None:intergenic
CGTTTGGTAATTGCAACTTT+AGG 0.425973 5_4:+35251064 None:intergenic
TTCCAACACATTCACTTCCA+TGG 0.444080 5_4:+35251171 None:intergenic
GAAAGATTGAAATAAACGTT+TGG 0.454568 5_4:+35251048 None:intergenic
GGCAGAGGATTCCTGTTGAT+GGG 0.484186 5_4:+35251085 None:intergenic
TGCAGTAGAGACAGAGTCCA+TGG 0.490511 5_4:-35251188 Msa0849030:intron
AAGGATCTGTATGTTTAGAA+AGG 0.501363 5_4:-35251004 Msa0849030:three_prime_UTR
TTGTAAGTCGTAGCTAATCA+AGG 0.519971 5_4:+35251026 None:intergenic
GTAATTGCAACTTTAGGCAG+AGG 0.520078 5_4:+35251070 None:intergenic
GTGATTCCTTTAGCCACAGT+TGG 0.523574 5_4:+35251121 None:intergenic
ATATTACCAACTGTGGCTAA+AGG 0.527091 5_4:-35251127 Msa0849030:CDS
TACATTCATATTACCAACTG+TGG 0.568778 5_4:-35251134 Msa0849030:CDS
AAAATAAATAAATAAAGCAA+TGG 0.583234 5_4:-35250904 Msa0849030:three_prime_UTR
CTGTGGCTAAAGGAATCACT+AGG 0.600468 5_4:-35251117 Msa0849030:CDS
GTGTGAGAAGTGCCAAAAGA+GGG 0.612120 5_4:-35255423 Msa0849030:CDS
AGTGTGAGAAGTGCCAAAAG+AGG 0.617748 5_4:-35255424 Msa0849030:CDS
TGATTAGCTACGACTTACAA+AGG 0.621450 5_4:-35251023 Msa0849030:exon
CCTAAGGCTATGCTACATGC+CGG 0.624972 5_4:+35250757 None:intergenic
GTCCATGGAAGTGAATGTGT+TGG 0.627475 5_4:-35251173 Msa0849030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATTTATATTTAT+TGG - chr5_4:35254637-35254656 Msa0849030:intron 0.0%
!!! TGTAGTTTTTAAAAAAATTA+CGG + chr5_4:35252906-35252925 None:intergenic 10.0%
!! CAATGATTTAAATTAAATAT+AGG + chr5_4:35253222-35253241 None:intergenic 10.0%
!! AAAAAATGTATAATAAATAG+GGG + chr5_4:35253455-35253474 None:intergenic 10.0%
!! GAAAAAAATGTATAATAAAT+AGG + chr5_4:35253457-35253476 None:intergenic 10.0%
!!! GTGATTTTTTTTTTATAATA+TGG + chr5_4:35254046-35254065 None:intergenic 10.0%
!!! TTTTTTTTTGCTTATAATTT+AGG - chr5_4:35254591-35254610 Msa0849030:intron 10.0%
!!! AAATGTGATTTTTTTAATAA+GGG + chr5_4:35254743-35254762 None:intergenic 10.0%
!!! AAATGTGATTTTTTTTTAAT+AGG - chr5_4:35254985-35255004 Msa0849030:intron 10.0%
!!! AATGTGATTTTTTTTTAATA+GGG - chr5_4:35254986-35255005 Msa0849030:intron 10.0%
!!! TGTACATAAATAATTTTTTT+AGG - chr5_4:35255594-35255613 Msa0849030:intron 10.0%
!! AAAATAAATAAATAAAGCAA+TGG - chr5_4:35255648-35255667 Msa0849030:intron 10.0%
!!! AAAAATATTTTTTTTAGTCT+AGG - chr5_4:35255700-35255719 Msa0849030:intron 10.0%
!!! TTTGTATTTTCACTTTATTT+TGG - chr5_4:35250884-35250903 Msa0849030:three_prime_UTR 15.0%
!!! TTGTATTTTCACTTTATTTT+GGG - chr5_4:35250885-35250904 Msa0849030:three_prime_UTR 15.0%
!!! AACAATAGTTTTACAAATTT+AGG - chr5_4:35251260-35251279 Msa0849030:intron 15.0%
!!! ACAATAGTTTTACAAATTTA+GGG - chr5_4:35251261-35251280 Msa0849030:intron 15.0%
!!! ATGTATATTTTTCTTTTTGT+AGG + chr5_4:35252134-35252153 None:intergenic 15.0%
!! TTTAATGAAAATTGAAGTTT+CGG + chr5_4:35252234-35252253 None:intergenic 15.0%
!!! TACATTTAGTAGTTTTTTTT+TGG - chr5_4:35252922-35252941 Msa0849030:intron 15.0%
!!! ATATGTTATGTTTGATTTTT+TGG - chr5_4:35253158-35253177 Msa0849030:intron 15.0%
!!! TATGTTATGTTTGATTTTTT+GGG - chr5_4:35253159-35253178 Msa0849030:intron 15.0%
!! AAAAATTATTCAAAGTAAAG+AGG + chr5_4:35253278-35253297 None:intergenic 15.0%
!!! ATCTTTGAAATAAGTTTTAT+AGG - chr5_4:35254393-35254412 Msa0849030:intron 15.0%
!!! TTTTGCATTTAATTTTTCTT+TGG - chr5_4:35254485-35254504 Msa0849030:intron 15.0%
!!! GAAATGTGATTTTTTTAATA+AGG + chr5_4:35254744-35254763 None:intergenic 15.0%
!!! ATGTGATTTTTTTTTAATAG+GGG - chr5_4:35254987-35255006 Msa0849030:intron 15.0%
!!! AAATAATTTCCTTGATAATA+AGG + chr5_4:35255767-35255786 None:intergenic 15.0%
!! TTATTATCAAGGAAATTATT+TGG - chr5_4:35255766-35255785 Msa0849030:CDS 15.0%
!! AATTGCTATAAAAAGTTCAA+AGG - chr5_4:35250804-35250823 Msa0849030:three_prime_UTR 20.0%
!! GACATTATTACAAAAATGAA+TGG - chr5_4:35251157-35251176 Msa0849030:CDS 20.0%
!! TCAACAAACTAATTTACTAA+TGG + chr5_4:35251473-35251492 None:intergenic 20.0%
!!! ATTAGTAAATTAGTTTGTTG+AGG - chr5_4:35251472-35251491 Msa0849030:intron 20.0%
!!! AGAGATTTGATGTTTTATAT+AGG + chr5_4:35251747-35251766 None:intergenic 20.0%
!! ATAAAACATCAAATCTCTAT+TGG - chr5_4:35251749-35251768 Msa0849030:intron 20.0%
!! TAAACCAATTGATCTTAAAT+AGG + chr5_4:35251831-35251850 None:intergenic 20.0%
!! AATTGTATCAATGCAAATTA+AGG + chr5_4:35251911-35251930 None:intergenic 20.0%
!! TTATCGTATAAATCTATGTT+TGG - chr5_4:35251961-35251980 Msa0849030:intron 20.0%
!!! ATATTTTTCTTTTTGTAGGA+AGG + chr5_4:35252130-35252149 None:intergenic 20.0%
!!! ATTAGAATTTACCTTTTTCA+AGG - chr5_4:35252960-35252979 Msa0849030:intron 20.0%
!! ATAACATATGTTTAGTATGA+CGG + chr5_4:35253147-35253166 None:intergenic 20.0%
!!! TAATTTTTTCAAAAAGTGAG+AGG - chr5_4:35253290-35253309 Msa0849030:intron 20.0%
!! GACAAAAAAAATTCTCAAAA+GGG + chr5_4:35253373-35253392 None:intergenic 20.0%
!! TGTAGTTGAAAATAACAAAA+GGG + chr5_4:35253409-35253428 None:intergenic 20.0%
!! ATGTAGTTGAAAATAACAAA+AGG + chr5_4:35253410-35253429 None:intergenic 20.0%
!! AAACATCAAAAGAAAAAGAA+TGG + chr5_4:35254099-35254118 None:intergenic 20.0%
!! ACAACTACTTTAATAGTTTA+TGG - chr5_4:35254229-35254248 Msa0849030:intron 20.0%
!!! GATGTAAAAACAATTTTCAT+TGG - chr5_4:35254418-35254437 Msa0849030:intron 20.0%
!!! GTAGACTCTTTAAAAAAAAA+AGG + chr5_4:35255065-35255084 None:intergenic 20.0%
!!! TATACGATTTTTTAATACGT+AGG + chr5_4:35255147-35255166 None:intergenic 20.0%
!! ACAAATCATATGATAAAACA+CGG + chr5_4:35255176-35255195 None:intergenic 20.0%
! AAAGTGAAAATACAAACCTT+TGG + chr5_4:35250880-35250899 None:intergenic 25.0%
!!! TTTGGGTTTTGATTTATGTT+TGG - chr5_4:35250902-35250921 Msa0849030:three_prime_UTR 25.0%
!!! TTGGGTTTTGATTTATGTTT+GGG - chr5_4:35250903-35250922 Msa0849030:three_prime_UTR 25.0%
! CATATGACCAAATTTATGTT+TGG + chr5_4:35251026-35251045 None:intergenic 25.0%
! CTGTCAAAAAAATCTTAGAA+AGG + chr5_4:35251235-35251254 None:intergenic 25.0%
!!! CTTTCTAAGATTTTTTTGAC+AGG - chr5_4:35251233-35251252 Msa0849030:intron 25.0%
!!! ACCTTTTTAAGATTTTTCTG+AGG - chr5_4:35251288-35251307 Msa0849030:intron 25.0%
!!! CCTTTTTAAGATTTTTCTGA+GGG - chr5_4:35251289-35251308 Msa0849030:intron 25.0%
!!! CTTTTTAAGATTTTTCTGAG+GGG - chr5_4:35251290-35251309 Msa0849030:intron 25.0%
! TTATAATATGTTTCACCCTA+AGG + chr5_4:35251402-35251421 None:intergenic 25.0%
! TTAGGGTGAAACATATTATA+AGG - chr5_4:35251401-35251420 Msa0849030:intron 25.0%
!!! TGGTATTTTTTAACCCATTT+GGG + chr5_4:35251453-35251472 None:intergenic 25.0%
!!! ATGGTATTTTTTAACCCATT+TGG + chr5_4:35251454-35251473 None:intergenic 25.0%
! GTTCAAATCATGTAACAATT+TGG + chr5_4:35251505-35251524 None:intergenic 25.0%
!!! CTTTTCTAGGAATTTTAACT+TGG + chr5_4:35251562-35251581 None:intergenic 25.0%
!! GTTTTATATAGGAATGAGAT+TGG + chr5_4:35251736-35251755 None:intergenic 25.0%
! CGATATTTAGTTACTATAAG+TGG + chr5_4:35251789-35251808 None:intergenic 25.0%
! ATCTATGTTTGGTATTATAG+TGG - chr5_4:35251972-35251991 Msa0849030:intron 25.0%
! TCTATGTTTGGTATTATAGT+GGG - chr5_4:35251973-35251992 Msa0849030:intron 25.0%
! TAAAAAACTAACTTTCCCAT+TGG + chr5_4:35252034-35252053 None:intergenic 25.0%
!! TTTTTACCACTAGATTAAAG+AGG - chr5_4:35252048-35252067 Msa0849030:intron 25.0%
! GTTTCGGATTGAAAAAAATA+TGG + chr5_4:35252508-35252527 None:intergenic 25.0%
!!! AAAGTTAGTTTTTATACCAC+TGG + chr5_4:35252807-35252826 None:intergenic 25.0%
! TATAAAAACTAACTTTCCCA+TGG - chr5_4:35252811-35252830 Msa0849030:intron 25.0%
! GATATGCATTATTATATGCA+GGG + chr5_4:35253039-35253058 None:intergenic 25.0%
!! TCAAAAGGGTCTTATAATTA+GGG + chr5_4:35253359-35253378 None:intergenic 25.0%
! GGACAAAAAAAATTCTCAAA+AGG + chr5_4:35253374-35253393 None:intergenic 25.0%
!! ACAAAAGGGTCTTATAAAAA+TGG + chr5_4:35253395-35253414 None:intergenic 25.0%
! CTAAGAATAGAAAATTCCAA+AGG + chr5_4:35253678-35253697 None:intergenic 25.0%
! ATCAAAAGAAAAAGAATGGA+GGG + chr5_4:35254095-35254114 None:intergenic 25.0%
!! CACTAAAACATCAAAAGTTT+TGG - chr5_4:35254294-35254313 Msa0849030:intron 25.0%
!!! CTCTAAAACATCAAAAGAAA+AGG - chr5_4:35254330-35254349 Msa0849030:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG - chr5_4:35254335-35254354 Msa0849030:intron 25.0%
!!! TGTCGTTTTTGCTTATAATT+TGG - chr5_4:35254554-35254573 Msa0849030:intron 25.0%
!!! GTCGTTTTTGCTTATAATTT+GGG - chr5_4:35254555-35254574 Msa0849030:intron 25.0%
! AACAAACAAAAATGCAAACT+CGG + chr5_4:35254663-35254682 None:intergenic 25.0%
! TCAAAATTGAAAGTTGCAAA+AGG + chr5_4:35254942-35254961 None:intergenic 25.0%
!!! GAGCAAGTTTTAGATTTATA+GGG + chr5_4:35254872-35254891 None:intergenic 25.0%
!!! TGAGCAAGTTTTAGATTTAT+AGG + chr5_4:35254873-35254892 None:intergenic 25.0%
! TCAACATAGTAAAAACTAGT+GGG + chr5_4:35254904-35254923 None:intergenic 25.0%
! TTCAACATAGTAAAAACTAG+TGG + chr5_4:35254905-35254924 None:intergenic 25.0%
! TTGCAAAAAAGAGAAAACTT+AGG - chr5_4:35254955-35254974 Msa0849030:intron 25.0%
! TGCAAAAAAGAGAAAACTTA+GGG - chr5_4:35254956-35254975 Msa0849030:intron 25.0%
! ATAAATCATCTGTAGATAAG+TGG - chr5_4:35255104-35255123 Msa0849030:intron 25.0%
! TGCTTATTTGTCACAATAAT+AGG - chr5_4:35255230-35255249 Msa0849030:intron 25.0%
! TTATTTGTCACAATAATAGG+AGG - chr5_4:35255233-35255252 Msa0849030:intron 25.0%
! CTACTGCATAATCATTATTT+AGG + chr5_4:35255352-35255371 None:intergenic 25.0%
! GAAAGATTGAAATAAACGTT+TGG + chr5_4:35255507-35255526 None:intergenic 25.0%
!!! TTTTTTAGTCTAGGAATCTA+AGG - chr5_4:35255709-35255728 Msa0849030:intron 25.0%
!!! GATTTTGGAAATAACAATTG+AGG + chr5_4:35255743-35255762 None:intergenic 25.0%
! TCAAAGGATTTTCCTCTATT+TGG - chr5_4:35250820-35250839 Msa0849030:three_prime_UTR 30.0%
! CAAAGGATTTTCCTCTATTT+GGG - chr5_4:35250821-35250840 Msa0849030:three_prime_UTR 30.0%
CAACGAATTCAGCAAAATTA+TGG - chr5_4:35250930-35250949 Msa0849030:three_prime_UTR 30.0%
GGTTATGTTGCTATAAAAAC+AGG - chr5_4:35251075-35251094 Msa0849030:CDS 30.0%
! TAATGTCAATAACCCTCTTT+TGG + chr5_4:35251144-35251163 None:intergenic 30.0%
!! ATAGCTCTAAATTGGCAATT+AGG + chr5_4:35251211-35251230 None:intergenic 30.0%
!! AGAAAGGTATAGCTCTAAAT+TGG + chr5_4:35251219-35251238 None:intergenic 30.0%
CCCTCAGAAAAATCTTAAAA+AGG + chr5_4:35251292-35251311 None:intergenic 30.0%
!! CAATTTAGGTGAGTTTGTTT+TGG + chr5_4:35251354-35251373 None:intergenic 30.0%
CAAAACAAACTCACCTAAAT+TGG - chr5_4:35251352-35251371 Msa0849030:intron 30.0%
!!! ATTTTTTAACCCATTTGGGT+CGG + chr5_4:35251449-35251468 None:intergenic 30.0%
!! ATTCCTAGAAAAGTATTCCA+TGG - chr5_4:35251569-35251588 Msa0849030:intron 30.0%
!! TTCCTAGAAAAGTATTCCAT+GGG - chr5_4:35251570-35251589 Msa0849030:intron 30.0%
AACATCAAATCTCTATTGGA+TGG - chr5_4:35251753-35251772 Msa0849030:intron 30.0%
! AGAGCCTATTTAAGATCAAT+TGG - chr5_4:35251824-35251843 Msa0849030:intron 30.0%
! AATTGGTTTATCCTCAATTG+AGG - chr5_4:35251841-35251860 Msa0849030:intron 30.0%
! ATTGGTTTATCCTCAATTGA+GGG - chr5_4:35251842-35251861 Msa0849030:intron 30.0%
!! CTCTGTTTTGAACATAAATC+AGG - chr5_4:35251866-35251885 Msa0849030:intron 30.0%
CTATGTTTGGTATTATAGTG+GGG - chr5_4:35251974-35251993 Msa0849030:intron 30.0%
AGGTACACTGATCTTATTAT+AGG - chr5_4:35252068-35252087 Msa0849030:intron 30.0%
TAATGCATAACAGATCTACT+AGG - chr5_4:35252470-35252489 Msa0849030:intron 30.0%
TTTATACCACTGGATTAAAG+AGG + chr5_4:35252797-35252816 None:intergenic 30.0%
!!! CTTTTTCAAGGTGAATAAGT+GGG - chr5_4:35252972-35252991 Msa0849030:intron 30.0%
!!! TTTTTCAAGGTGAATAAGTG+GGG - chr5_4:35252973-35252992 Msa0849030:intron 30.0%
GGATATGCATTATTATATGC+AGG + chr5_4:35253040-35253059 None:intergenic 30.0%
TAGCTTCTACAAAATTACAG+TGG - chr5_4:35253097-35253116 Msa0849030:intron 30.0%
AGCTTCTACAAAATTACAGT+GGG - chr5_4:35253098-35253117 Msa0849030:intron 30.0%
!!! TGTTTGATTTTTTGGGATTG+AGG - chr5_4:35253166-35253185 Msa0849030:intron 30.0%
! CTCAAAAGGGTCTTATAATT+AGG + chr5_4:35253360-35253379 None:intergenic 30.0%
! AATTTTATCCTTTGACAGAG+AGG + chr5_4:35253520-35253539 None:intergenic 30.0%
! AATAACGGGAATTAAGATAG+TGG + chr5_4:35253584-35253603 None:intergenic 30.0%
!! GGCTCTTTTGAAAAAATAAC+GGG + chr5_4:35253598-35253617 None:intergenic 30.0%
!! GGGCTCTTTTGAAAAAATAA+CGG + chr5_4:35253599-35253618 None:intergenic 30.0%
TTACATTAGTAGTCAACCTT+TGG - chr5_4:35253659-35253678 Msa0849030:intron 30.0%
GTAACTAACAATAGCAGTTT+CGG + chr5_4:35253740-35253759 None:intergenic 30.0%
CATCAAAAGAAAAAGAATGG+AGG + chr5_4:35254096-35254115 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - chr5_4:35254106-35254125 Msa0849030:intron 30.0%
ATTCACATGTGATAAACCAA+AGG - chr5_4:35254204-35254223 Msa0849030:intron 30.0%
ATTAAAGTAGTTGTGACCTT+TGG + chr5_4:35254223-35254242 None:intergenic 30.0%
! TTTATGGTGTTTTCCAACAA+GGG - chr5_4:35254245-35254264 Msa0849030:intron 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - chr5_4:35254339-35254358 Msa0849030:intron 30.0%
! TTGCTTATAATTTAGGACGA+AGG - chr5_4:35254598-35254617 Msa0849030:intron 30.0%
! TGCTTATAATTTAGGACGAA+GGG - chr5_4:35254599-35254618 Msa0849030:intron 30.0%
AAATTGAAAGTTGCAAAAGG+AGG + chr5_4:35254781-35254800 None:intergenic 30.0%
TCAAAATCAACCATTCAAGA+CGG - chr5_4:35254808-35254827 Msa0849030:intron 30.0%
GATTTATAGGGCAAAGAATA+TGG + chr5_4:35254860-35254879 None:intergenic 30.0%
AACATAGTAAAAACTAGTGG+GGG + chr5_4:35254902-35254921 None:intergenic 30.0%
CAACATAGTAAAAACTAGTG+GGG + chr5_4:35254903-35254922 None:intergenic 30.0%
GCAAAAAAGAGAAAACTTAG+GGG - chr5_4:35254957-35254976 Msa0849030:intron 30.0%
CAAAAAAGAGAAAACTTAGG+GGG - chr5_4:35254958-35254977 Msa0849030:intron 30.0%
AAAAAAGAGAAAACTTAGGG+GGG - chr5_4:35254959-35254978 Msa0849030:intron 30.0%
! CTTTGCATTAATTGCGATTT+TGG + chr5_4:35255013-35255032 None:intergenic 30.0%
ATCGCAATTAATGCAAAGTT+AGG - chr5_4:35255015-35255034 Msa0849030:intron 30.0%
TCGCAATTAATGCAAAGTTA+GGG - chr5_4:35255016-35255035 Msa0849030:intron 30.0%
! AACTTTGCTAACTTTTGCAA+TGG - chr5_4:35255302-35255321 Msa0849030:intron 30.0%
TACATTCATATTACCAACTG+TGG - chr5_4:35255418-35255437 Msa0849030:CDS 30.0%
AAGGATCTGTATGTTTAGAA+AGG - chr5_4:35255548-35255567 Msa0849030:intron 30.0%
!! CCTTGATAATAAGGTGATTT+TGG + chr5_4:35255758-35255777 None:intergenic 30.0%
CCAAAATCACCTTATTATCA+AGG - chr5_4:35255755-35255774 Msa0849030:intron 30.0%
GAAAATACAAACCTTTGGCA+TGG + chr5_4:35250875-35250894 None:intergenic 35.0%
CGAATTCAGCAAAATTATGG+TGG - chr5_4:35250933-35250952 Msa0849030:three_prime_UTR 35.0%
! TTTGGAGCTTCACAAAATCA+CGG + chr5_4:35250961-35250980 None:intergenic 35.0%
TTTGTGAAGCTCCAAAATCA+AGG - chr5_4:35250965-35250984 Msa0849030:three_prime_UTR 35.0%
AGTCGGTCCAAACATAAATT+TGG - chr5_4:35251016-35251035 Msa0849030:three_prime_UTR 35.0%
!!! TTTTAGAGTATTCAGCCTGA+TGG - chr5_4:35251049-35251068 Msa0849030:CDS 35.0%
GCTATAAAAACAGGTTCATG+AGG - chr5_4:35251084-35251103 Msa0849030:CDS 35.0%
ATTCTCTCTGGTACCAATTT+AGG + chr5_4:35251368-35251387 None:intergenic 35.0%
AAACTAACTTTCCCATTGGT+GGG + chr5_4:35252030-35252049 None:intergenic 35.0%
AAAACTAACTTTCCCATTGG+TGG + chr5_4:35252031-35252050 None:intergenic 35.0%
AGTGTACCTCTTTAATCTAG+TGG + chr5_4:35252057-35252076 None:intergenic 35.0%
AAAGCTTTCCTTTCTTTGAC+TGG - chr5_4:35252358-35252377 Msa0849030:intron 35.0%
TTTCGTTTCCAGTCAAAGAA+AGG + chr5_4:35252369-35252388 None:intergenic 35.0%
! CGAAATCCAGATATTTTGCA+TGG - chr5_4:35252384-35252403 Msa0849030:intron 35.0%
GTTGAACCATGCAAAATATC+TGG + chr5_4:35252393-35252412 None:intergenic 35.0%
AGGAAGGTGAAAATAAGGAT+TGG - chr5_4:35252601-35252620 Msa0849030:intron 35.0%
AAAATAAGGATTGGAGACCA+TGG - chr5_4:35252610-35252629 Msa0849030:intron 35.0%
TGGGGAAAGATATACAGTAT+GGG - chr5_4:35252748-35252767 Msa0849030:intron 35.0%
AAAAACTAACTTTCCCATGG+TGG - chr5_4:35252814-35252833 Msa0849030:intron 35.0%
AAAACTAACTTTCCCATGGT+GGG - chr5_4:35252815-35252834 Msa0849030:intron 35.0%
ATTGTGACGTATCCACTATA+AGG + chr5_4:35252871-35252890 None:intergenic 35.0%
CCACTTATTCACCTTGAAAA+AGG + chr5_4:35252974-35252993 None:intergenic 35.0%
!!! CCTTTTTCAAGGTGAATAAG+TGG - chr5_4:35252971-35252990 Msa0849030:intron 35.0%
ATTATTATATGCAGGGACTG+GGG + chr5_4:35253032-35253051 None:intergenic 35.0%
CATTATTATATGCAGGGACT+GGG + chr5_4:35253033-35253052 None:intergenic 35.0%
CATATGTTTAGTATGACGGT+GGG + chr5_4:35253143-35253162 None:intergenic 35.0%
ACATATGTTTAGTATGACGG+TGG + chr5_4:35253144-35253163 None:intergenic 35.0%
! AAGGGTCTTATAATTAGGGA+CGG + chr5_4:35253355-35253374 None:intergenic 35.0%
TAAATCAACCTCTCTGTCAA+AGG - chr5_4:35253509-35253528 Msa0849030:intron 35.0%
TTCAAAAGAGCCCTGTAATT+AGG - chr5_4:35253606-35253625 Msa0849030:intron 35.0%
TCAAAAGAGCCCTGTAATTA+GGG - chr5_4:35253607-35253626 Msa0849030:intron 35.0%
! GTTCTTTTCTGTGTCTTACT+TGG + chr5_4:35253876-35253895 None:intergenic 35.0%
! GTTTATGGTGTTTTCCAACA+AGG - chr5_4:35254244-35254263 Msa0849030:intron 35.0%
TTTCTCAAGTTTACCCTTGT+TGG + chr5_4:35254261-35254280 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG - chr5_4:35254338-35254357 Msa0849030:intron 35.0%
!! CTTTGACTTAAACGCACTTT+TGG - chr5_4:35254686-35254705 Msa0849030:intron 35.0%
ATCGCAACTAGTACAAAGTT+AGG + chr5_4:35254715-35254734 None:intergenic 35.0%
TTGCAAAAGGAGGAAAACTT+AGG + chr5_4:35254771-35254790 None:intergenic 35.0%
! CAAAGAATATGGTTTGAGAC+TGG + chr5_4:35254849-35254868 None:intergenic 35.0%
CGCAATTAATGCAAAGTTAG+GGG - chr5_4:35255017-35255036 Msa0849030:intron 35.0%
ATATTACCAACTGTGGCTAA+AGG - chr5_4:35255425-35255444 Msa0849030:CDS 35.0%
! CGTTTGGTAATTGCAACTTT+AGG + chr5_4:35255491-35255510 None:intergenic 35.0%
TTGTAAGTCGTAGCTAATCA+AGG + chr5_4:35255529-35255548 None:intergenic 35.0%
! TGATTAGCTACGACTTACAA+AGG - chr5_4:35255529-35255548 Msa0849030:intron 35.0%
GGAAATTATTTGGCGATATC+CGG - chr5_4:35255776-35255795 Msa0849030:CDS 35.0%
GCTAAACTAGTCCCAAATAG+AGG + chr5_4:35250835-35250854 None:intergenic 40.0%
AGAATCTTTGTCCATGCCAA+AGG - chr5_4:35250861-35250880 Msa0849030:three_prime_UTR 40.0%
AGCAACATAACCAAACCATC+AGG + chr5_4:35251067-35251086 None:intergenic 40.0%
! AGAATTGAGTCTGAGACCTT+AGG - chr5_4:35251383-35251402 Msa0849030:intron 40.0%
! GAATTGAGTCTGAGACCTTA+GGG - chr5_4:35251384-35251403 Msa0849030:intron 40.0%
! CTCCCATGGAATACTTTTCT+AGG + chr5_4:35251575-35251594 None:intergenic 40.0%
TATTCCATGGGAGACAAAGA+GGG - chr5_4:35251582-35251601 Msa0849030:intron 40.0%
TTTCTAGGTGGAAACCAACA+AGG + chr5_4:35251633-35251652 None:intergenic 40.0%
!! ACAAATGCCAGGCTATTTCT+AGG + chr5_4:35251648-35251667 None:intergenic 40.0%
GAAATAGCCTGGCATTTGTT+TGG - chr5_4:35251649-35251668 Msa0849030:intron 40.0%
AAAACAGAGTCCCTCAATTG+AGG + chr5_4:35251855-35251874 None:intergenic 40.0%
AGGAAGGTTGAAGACAAAGT+GGG + chr5_4:35252114-35252133 None:intergenic 40.0%
TAGGAAGGTTGAAGACAAAG+TGG + chr5_4:35252115-35252134 None:intergenic 40.0%
TGTTGAAAAACAACCGCTAG+AGG - chr5_4:35252571-35252590 Msa0849030:intron 40.0%
GAACGAGGAAGGTGAAAATA+AGG - chr5_4:35252596-35252615 Msa0849030:intron 40.0%
AGGAGATAGTAACAGAGAAG+AGG - chr5_4:35252651-35252670 Msa0849030:intron 40.0%
GAAGTTCAATGGAGAGAAGA+TGG - chr5_4:35252682-35252701 Msa0849030:intron 40.0%
TCAATGGAGAGAAGATGGTT+AGG - chr5_4:35252687-35252706 Msa0849030:intron 40.0%
CAATGGAGAGAAGATGGTTA+GGG - chr5_4:35252688-35252707 Msa0849030:intron 40.0%
GTGGGGAAAGATATACAGTA+TGG - chr5_4:35252747-35252766 Msa0849030:intron 40.0%
AGTGTACCTCTTTAATCCAG+TGG - chr5_4:35252788-35252807 Msa0849030:intron 40.0%
TATAAGGTGCAGTTTAGCCT+GGG + chr5_4:35252855-35252874 None:intergenic 40.0%
GCATTATTATATGCAGGGAC+TGG + chr5_4:35253034-35253053 None:intergenic 40.0%
CCAGTCAAAAATAGTAACGC+TGG + chr5_4:35253716-35253735 None:intergenic 40.0%
!!! CCAGCGTTACTATTTTTGAC+TGG - chr5_4:35253713-35253732 Msa0849030:intron 40.0%
! CTTTTCTGTGTCTTACTTGG+TGG + chr5_4:35253873-35253892 None:intergenic 40.0%
ATATGGGACGAAGTGAGTAA+TGG + chr5_4:35254029-35254048 None:intergenic 40.0%
TGATCTTCTACCGTCTTGAA+TGG + chr5_4:35254821-35254840 None:intergenic 40.0%
! GGCTTAAACAGTCACACTTT+TGG + chr5_4:35255044-35255063 None:intergenic 40.0%
TTCCAACACATTCACTTCCA+TGG + chr5_4:35255384-35255403 None:intergenic 40.0%
GGCAAATTATTCCCATCAAC+AGG - chr5_4:35255456-35255475 Msa0849030:intron 40.0%
GTAATTGCAACTTTAGGCAG+AGG + chr5_4:35255485-35255504 None:intergenic 40.0%
GTGAAGCTCCAAAATCAAGG+CGG - chr5_4:35250968-35250987 Msa0849030:three_prime_UTR 45.0%
! GATTTTGCCAATCTCGCAGT+CGG - chr5_4:35250999-35251018 Msa0849030:three_prime_UTR 45.0%
GAGTATTCAGCCTGATGGTT+TGG - chr5_4:35251054-35251073 Msa0849030:CDS 45.0%
!! AGTGTGAGAAGTGCCAAAAG+AGG - chr5_4:35251128-35251147 Msa0849030:CDS 45.0%
!! GTGTGAGAAGTGCCAAAAGA+GGG - chr5_4:35251129-35251148 Msa0849030:CDS 45.0%
GTCTCAGACTCAATTCTCTC+TGG + chr5_4:35251380-35251399 None:intergenic 45.0%
GTATTCCATGGGAGACAAAG+AGG - chr5_4:35251581-35251600 Msa0849030:intron 45.0%
GTTTCCACCTAGAAATAGCC+TGG - chr5_4:35251638-35251657 Msa0849030:intron 45.0%
!! AATGCCAGGCTATTTCTAGG+TGG + chr5_4:35251645-35251664 None:intergenic 45.0%
TCTGCTACCAAACAAATGCC+AGG + chr5_4:35251659-35251678 None:intergenic 45.0%
AACTTCGACAGTGGAAGTTG+TGG + chr5_4:35252435-35252454 None:intergenic 45.0%
AGTAACAGAGAAGAGGAGAG+AGG - chr5_4:35252658-35252677 Msa0849030:intron 45.0%
AGGAGAGAGGTGAAGTTCAA+TGG - chr5_4:35252671-35252690 Msa0849030:intron 45.0%
ATGGTTAGGGAAGGAGTTGA+TGG - chr5_4:35252701-35252720 Msa0849030:intron 45.0%
CTATAAGGTGCAGTTTAGCC+TGG + chr5_4:35252856-35252875 None:intergenic 45.0%
GGCTAAACTGCACCTTATAG+TGG - chr5_4:35252856-35252875 Msa0849030:intron 45.0%
! GGTCTTATAATTAGGGACGG+AGG + chr5_4:35253352-35253371 None:intergenic 45.0%
AAGAGCCCTGTAATTAGGGA+CGG - chr5_4:35253611-35253630 Msa0849030:intron 45.0%
TACCTCCGTCCCTAATTACA+GGG + chr5_4:35253619-35253638 None:intergenic 45.0%
GCAAGCTCAAGAGTTAGCAA+AGG + chr5_4:35255330-35255349 None:intergenic 45.0%
GTCCATGGAAGTGAATGTGT+TGG - chr5_4:35255379-35255398 Msa0849030:intron 45.0%
GTGATTCCTTTAGCCACAGT+TGG + chr5_4:35255434-35255453 None:intergenic 45.0%
CTGTGGCTAAAGGAATCACT+AGG - chr5_4:35255435-35255454 Msa0849030:intron 45.0%
!! AAAAAAATGTATAATAAATA+GGG + chr5_4:35253456-35253475 None:intergenic 5.0%
!!! TGATTTTTTTTTTATAATAT+GGG + chr5_4:35254045-35254064 None:intergenic 5.0%
CTGCGAGATTGGCAAAATCG+TGG + chr5_4:35250998-35251017 None:intergenic 50.0%
ACCATCAGATCCGACCCAAA+TGG - chr5_4:35251436-35251455 Msa0849030:intron 50.0%
CCATCAGATCCGACCCAAAT+GGG - chr5_4:35251437-35251456 Msa0849030:intron 50.0%
TTGGAAGAGGTGGTCCTTGT+TGG - chr5_4:35251616-35251635 Msa0849030:intron 50.0%
!!! AGGCTGGTTTTTCCCACCAA+TGG - chr5_4:35252015-35252034 Msa0849030:intron 50.0%
!!! GGCTGGTTTTTCCCACCAAT+GGG - chr5_4:35252016-35252035 Msa0849030:intron 50.0%
CTTCCACTGTCGAAGTTCTC+AGG - chr5_4:35252438-35252457 Msa0849030:intron 50.0%
ACACCTGAGAACTTCGACAG+TGG + chr5_4:35252444-35252463 None:intergenic 50.0%
ACAAGCGTGTTCTCTGATGC+CGG + chr5_4:35252554-35252573 None:intergenic 50.0%
CTTCCTCGTTCTTCCTCTAG+CGG + chr5_4:35252587-35252606 None:intergenic 50.0%
! CATGGAGAGAGAAAGCGTGA+GGG - chr5_4:35252628-35252647 Msa0849030:intron 50.0%
GGAGAGAAGATGGTTAGGGA+AGG - chr5_4:35252692-35252711 Msa0849030:intron 50.0%
! TTGATGGCAGCGAGAGTATG+TGG - chr5_4:35252717-35252736 Msa0849030:intron 50.0%
!! AGAGTATGTGGTGGGTGAGT+GGG - chr5_4:35252729-35252748 Msa0849030:intron 50.0%
!!! AGGCTGGTTTTTCCCACCAT+GGG + chr5_4:35252830-35252849 None:intergenic 50.0%
!!! AAGGCTGGTTTTTCCCACCA+TGG + chr5_4:35252014-35252033 None:intergenic 50.0%
! AGGTGAATAAGTGGGGTGTC+TGG - chr5_4:35252980-35252999 Msa0849030:intron 50.0%
! GGTGAATAAGTGGGGTGTCT+GGG - chr5_4:35252981-35253000 Msa0849030:intron 50.0%
! GTGAATAAGTGGGGTGTCTG+GGG - chr5_4:35252982-35253001 Msa0849030:intron 50.0%
TGAGCATAGCTCAGTTGGCA+GGG + chr5_4:35253061-35253080 None:intergenic 50.0%
ATGAGCATAGCTCAGTTGGC+AGG + chr5_4:35253062-35253081 None:intergenic 50.0%
TGCCAACTGAGCTATGCTCA+TGG - chr5_4:35253061-35253080 Msa0849030:intron 50.0%
GCCAACTGAGCTATGCTCAT+GGG - chr5_4:35253062-35253081 Msa0849030:intron 50.0%
CCAACTGAGCTATGCTCATG+GGG - chr5_4:35253063-35253082 Msa0849030:intron 50.0%
CTACCTCCGTCCCTAATTAC+AGG + chr5_4:35253620-35253639 None:intergenic 50.0%
TGCAGTAGAGACAGAGTCCA+TGG - chr5_4:35255364-35255383 Msa0849030:intron 50.0%
GGCAGAGGATTCCTGTTGAT+GGG + chr5_4:35255470-35255489 None:intergenic 50.0%
AGGCAGAGGATTCCTGTTGA+TGG + chr5_4:35255471-35255490 None:intergenic 50.0%
! GTGGTGAGCCGCCTTGATTT+TGG + chr5_4:35250979-35250998 None:intergenic 55.0%
GTTTGGACCGACTGCGAGAT+TGG + chr5_4:35251009-35251028 None:intergenic 55.0%
CCCATTTGGGTCGGATCTGA+TGG + chr5_4:35251440-35251459 None:intergenic 55.0%
TCCATGGGAGACAAAGAGGG+TGG - chr5_4:35251585-35251604 Msa0849030:intron 55.0%
CCATGGGAGACAAAGAGGGT+GGG - chr5_4:35251586-35251605 Msa0849030:intron 55.0%
CATGGGAGACAAAGAGGGTG+GGG - chr5_4:35251587-35251606 Msa0849030:intron 55.0%
CCAGCCTTTCCCAGGCTAAA+CGG + chr5_4:35252843-35252862 None:intergenic 55.0%
GGGAAAAACCAGCCTTTCCC+AGG + chr5_4:35252835-35252854 None:intergenic 55.0%
CAACCGCTAGAGGAAGAACG+AGG - chr5_4:35252581-35252600 Msa0849030:intron 55.0%
CGCTAGAGGAAGAACGAGGA+AGG - chr5_4:35252585-35252604 Msa0849030:intron 55.0%
CCTCACGCTTTCTCTCTCCA+TGG + chr5_4:35252630-35252649 None:intergenic 55.0%
! CCATGGAGAGAGAAAGCGTG+AGG - chr5_4:35252627-35252646 Msa0849030:intron 55.0%
! ATGGCAGCGAGAGTATGTGG+TGG - chr5_4:35252720-35252739 Msa0849030:intron 55.0%
! TGGCAGCGAGAGTATGTGGT+GGG - chr5_4:35252721-35252740 Msa0849030:intron 55.0%
!! GAGAGTATGTGGTGGGTGAG+TGG - chr5_4:35252728-35252747 Msa0849030:intron 55.0%
!! GAGTATGTGGTGGGTGAGTG+GGG - chr5_4:35252730-35252749 Msa0849030:intron 55.0%
GGGAAAAACCAGCCTTTCCC+AGG - chr5_4:35252835-35252854 Msa0849030:intron 55.0%
CAGTTTAGCCTGGGAAAGGC+TGG + chr5_4:35252846-35252865 None:intergenic 55.0%
GGTGCAGTTTAGCCTGGGAA+AGG + chr5_4:35252850-35252869 None:intergenic 55.0%
CCCCATGAGCATAGCTCAGT+TGG + chr5_4:35253066-35253085 None:intergenic 55.0%
AGCCCTGTAATTAGGGACGG+AGG - chr5_4:35253614-35253633 Msa0849030:intron 55.0%
CCCACCCTCTTTGTCTCCCA+TGG + chr5_4:35251589-35251608 None:intergenic 60.0%
AAAGAGGGTGGGGCACACGT+TGG - chr5_4:35251597-35251616 Msa0849030:intron 60.0%
!! TAGTGGGGTGCCGTTTAGCC+TGG - chr5_4:35251989-35252008 Msa0849030:intron 60.0%
!! AGTGGGGTGCCGTTTAGCCT+GGG - chr5_4:35251990-35252009 Msa0849030:intron 60.0%
!! GGTGCCGTTTAGCCTGGGAA+AGG - chr5_4:35251995-35252014 Msa0849030:intron 60.0%
CCGTTTAGCCTGGGAAAGGC+TGG - chr5_4:35251999-35252018 Msa0849030:intron 60.0%
GTGTTCTCTGATGCCGGCGA+CGG + chr5_4:35252548-35252567 None:intergenic 60.0%
! GGAGAGAGAAAGCGTGAGGG+AGG - chr5_4:35252631-35252650 Msa0849030:intron 60.0%
AGGGACTGGGGTTCATGCAG+GGG + chr5_4:35253020-35253039 None:intergenic 60.0%
CAGGGACTGGGGTTCATGCA+GGG + chr5_4:35253021-35253040 None:intergenic 60.0%
GGTGGGGCACACGTTGGAAG+AGG - chr5_4:35251603-35251622 Msa0849030:intron 65.0%
GGGGCACACGTTGGAAGAGG+TGG - chr5_4:35251606-35251625 Msa0849030:intron 65.0%
TCCGAAACCAGCACCACCGC+CGG - chr5_4:35252520-35252539 Msa0849030:intron 65.0%
TGGGGTTCATGCAGGGGCTG+GGG + chr5_4:35253014-35253033 None:intergenic 65.0%
CTGGGGTTCATGCAGGGGCT+GGG + chr5_4:35253015-35253034 None:intergenic 65.0%
ACTGGGGTTCATGCAGGGGC+TGG + chr5_4:35253016-35253035 None:intergenic 65.0%
GCAGGGACTGGGGTTCATGC+AGG + chr5_4:35253022-35253041 None:intergenic 65.0%
!! GCCGGCGGTGGTGCTGGTTT+CGG + chr5_4:35252524-35252543 None:intergenic 70.0%
TCTGATGCCGGCGACGGTGC+CGG + chr5_4:35252542-35252561 None:intergenic 70.0%
!!! GACGGTGCCGGCGGTGGTGC+TGG + chr5_4:35252530-35252549 None:intergenic 80.0%
! ACCACCGCCGGCACCGTCGC+CGG - chr5_4:35252532-35252551 Msa0849030:intron 80.0%
!! GATGCCGGCGACGGTGCCGG+CGG + chr5_4:35252539-35252558 None:intergenic 80.0%
!!! GCCGGCGACGGTGCCGGCGG+TGG + chr5_4:35252536-35252555 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 35250766 35255808 35250766 ID=Msa0849030;Name=Msa0849030
chr5_4 mRNA 35250766 35255808 35250766 ID=Msa0849030-mRNA-1;Parent=Msa0849030;Name=Msa0849030-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.33|1|0|0|3|273|91
chr5_4 exon 35250766 35251205 35250766 ID=Msa0849030-mRNA-1:exon:11823;Parent=Msa0849030-mRNA-1
chr5_4 exon 35255396 35255452 35255396 ID=Msa0849030-mRNA-1:exon:11822;Parent=Msa0849030-mRNA-1
chr5_4 exon 35255757 35255808 35255757 ID=Msa0849030-mRNA-1:exon:11821;Parent=Msa0849030-mRNA-1
chr5_4 CDS 35255757 35255808 35255757 ID=Msa0849030-mRNA-1:cds;Parent=Msa0849030-mRNA-1
chr5_4 CDS 35255396 35255452 35255396 ID=Msa0849030-mRNA-1:cds;Parent=Msa0849030-mRNA-1
chr5_4 CDS 35251039 35251205 35251039 ID=Msa0849030-mRNA-1:cds;Parent=Msa0849030-mRNA-1
chr5_4 three_prime_UTR 35250766 35251038 35250766 ID=Msa0849030-mRNA-1:three_prime_utr;Parent=Msa0849030-mRNA-1
Gene Sequence

>Msa0849030

ATGGCTTTTAAAGATAGTGCTAAAAGCGAGCTTCACGAAATTGCTATAAAAAATATGCAGTGTGAGAAGTGCCAAAAGAGGGTTATTGACATTATTACAAAAATGAATGTAGAGACAGAGTCCATGGAAGTGAATGTGTTGGAAAAGAAAGTGACACTTACATTCATATTACCAACTGTGGCTAAAGGAATCACTAGGCAAATTATTCCCATCAACAGGAATCCTCTGCCTAAAGTTGCAATTACCAAACGTTTATTTCAATCTTTCCTTGATTAG

Protein sequence

>Msa0849030

MAFKDSAKSELHEIAIKNMQCEKCQKRVIDIITKMNVETESMEVNVLEKKVTLTFILPTVAKGITRQIIPINRNPLPKVAITKRLFQSFLD*