AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0820850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820850 MtrunA17_Chr5g0440971 95.816 239 10 0 1 239 1 239 5.01e-172 473
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820850 AT2G26970.1 60.593 236 78 4 1 236 1 221 3.78e-101 293
Msa0820850 AT2G26970.2 58.898 236 78 2 1 236 1 217 1.82e-100 291

Find 63 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTCGGCTCATGGGTTT+TGG 0.172558 5_3:+58505978 None:intergenic
GAGAAGATCTCCGCCAATTT+TGG 0.229266 5_3:+58502241 None:intergenic
GCAGAAATACATGCCAAAAT+TGG 0.239555 5_3:-58502254 Msa0820850:intron
CAACCTCCTTCTCTTCCTTC+TGG 0.262802 5_3:-58505763 Msa0820850:intron
ATCCATATTTGTCTGATTAC+AGG 0.267713 5_3:-58504484 Msa0820850:CDS
GGTTGGGTTGGGTCGGCTCA+TGG 0.308733 5_3:+58505971 None:intergenic
CGTTATCATTTCTTGACCTT+TGG 0.318803 5_3:+58501820 None:intergenic
TATTGAAGTGGATAGAATTC+TGG 0.339978 5_3:-58504331 Msa0820850:CDS
ATTACAGGTTACCTCTTGTC+TGG 0.356384 5_3:-58504469 Msa0820850:CDS
AATATATACCTCCACCGATT+TGG 0.364407 5_3:+58504275 None:intergenic
GAATTCGTTAAGAAACATAT+TGG 0.379765 5_3:-58502548 Msa0820850:CDS
GTTGGGTTGGGTCGGCTCAT+GGG 0.391325 5_3:+58505972 None:intergenic
GTTTGATGTATGACCAAATC+AGG 0.394324 5_3:+58503525 None:intergenic
AGGAAGAGAAGGAGGTTGAA+TGG 0.397608 5_3:+58505768 None:intergenic
TGAAAGAGAAGCTGAAGAAC+AGG 0.404389 5_3:-58503280 Msa0820850:intron
ATCCTAAATATAAAATTTGT+CGG 0.408088 5_3:-58506013 Msa0820850:five_prime_UTR
AACCTGTAATCAGACAAATA+TGG 0.412327 5_3:+58504482 None:intergenic
GGTGATCGGTGGGTTGGGTT+GGG 0.412911 5_3:+58505960 None:intergenic
TGGTGATCGGTGGGTTGGGT+TGG 0.416739 5_3:+58505959 None:intergenic
AAAGTGGTGATCGGTGGGTT+GGG 0.451031 5_3:+58505955 None:intergenic
TCCTAAATATAAAATTTGTC+GGG 0.462721 5_3:-58506012 Msa0820850:five_prime_UTR
CTCTTTCAAGTATTCCACTT+TGG 0.465585 5_3:+58505872 None:intergenic
ATCGGTGGGTTGGGTTGGGT+CGG 0.469018 5_3:+58505964 None:intergenic
TCTCAGCTCTTTGCATTCGC+TGG 0.486307 5_3:-58502192 Msa0820850:CDS
CAAACTAAGGAGTGCCTTGA+CGG 0.488693 5_3:-58503507 Msa0820850:CDS
AGATGGAAACTTAACCAAAT+CGG 0.490696 5_3:-58504289 Msa0820850:CDS
TGCATTCGCTGGTATCCTAA+AGG 0.490721 5_3:-58502181 Msa0820850:intron
AAAAGTGGTGATCGGTGGGT+TGG 0.500809 5_3:+58505954 None:intergenic
AGTGGTGGAAAGAAAGCTAA+TGG 0.513081 5_3:-58504548 Msa0820850:CDS
GGCAGGAAATTCGATATATG+TGG 0.518560 5_3:-58502504 Msa0820850:CDS
AATATCAAGATCTATTTGCT+AGG 0.521798 5_3:+58501709 None:intergenic
TAAGGAGTGCCTTGACGGGA+TGG 0.527772 5_3:-58503502 Msa0820850:CDS
GCCTTGACGGGATGGGAGAA+TGG 0.534435 5_3:-58503494 Msa0820850:CDS
TGTGGATTTACAATATATGA+AGG 0.536829 5_3:-58502486 Msa0820850:intron
TTTCTTGGTGCAGGTAGTGG+TGG 0.539229 5_3:-58504563 Msa0820850:intron
AGGTACTTACAAACCTCTCT+TGG 0.539546 5_3:-58502525 Msa0820850:CDS
CACTCACTCAGAGTCAAAAG+TGG 0.542326 5_3:+58505939 None:intergenic
ACCTCTTGTCTGGATTGACT+TGG 0.542563 5_3:-58504459 Msa0820850:CDS
ATTGCTTGTATAATTACAGA+TGG 0.542610 5_3:-58504306 Msa0820850:CDS
TTTGGTCATACATCAAACTA+AGG 0.543284 5_3:-58503520 Msa0820850:CDS
GAAAAGAAACTGCGCCAAAG+TGG 0.544844 5_3:-58505886 Msa0820850:five_prime_UTR
GGCGGAGATCTTCTCTCATG+TGG 0.546349 5_3:-58502233 Msa0820850:CDS
GAAATACATGCCAAAATTGG+CGG 0.553319 5_3:-58502251 Msa0820850:CDS
AGCATACCAGAAGGAAGAGA+AGG 0.556437 5_3:+58505757 None:intergenic
AAACTAAGGAGTGCCTTGAC+GGG 0.562071 5_3:-58503506 Msa0820850:CDS
ACTTACAAACCTCTCTTGGC+AGG 0.564752 5_3:-58502521 Msa0820850:CDS
AAGGAGTGCCTTGACGGGAT+GGG 0.565318 5_3:-58503501 Msa0820850:CDS
TGGATTGACTTGGAAATGAC+TGG 0.570107 5_3:-58504449 Msa0820850:intron
TTCGTTAAGAAACATATTGG+AGG 0.577409 5_3:-58502545 Msa0820850:CDS
GAGTCAAAAGTGGTGATCGG+TGG 0.579074 5_3:+58505949 None:intergenic
ATCGAATTTCCTGCCAAGAG+AGG 0.584584 5_3:+58502512 None:intergenic
AGTCAAAAGTGGTGATCGGT+GGG 0.588784 5_3:+58505950 None:intergenic
AAACTTAACCAAATCGGTGG+AGG 0.589283 5_3:-58504283 Msa0820850:intron
TCCAAGTCAATCCAGACAAG+AGG 0.594779 5_3:+58504458 None:intergenic
AAAAGTCATCACGCTGCTAG+TGG 0.595217 5_3:-58503468 Msa0820850:intron
TGATATTAGAGAAAGTATTG+AGG 0.606819 5_3:-58501875 Msa0820850:CDS
TGCAGGTTTGAATATTGAAG+TGG 0.613241 5_3:-58504343 Msa0820850:intron
TCAGAGTCAAAAGTGGTGAT+CGG 0.614955 5_3:+58505946 None:intergenic
ACCATTCTCCCATCCCGTCA+AGG 0.616339 5_3:+58503493 None:intergenic
ATACCAGAAGGAAGAGAAGG+AGG 0.632940 5_3:+58505760 None:intergenic
TGGAAACTTAACCAAATCGG+TGG 0.638946 5_3:-58504286 Msa0820850:CDS
ATAAACTTGTCATAACAATG+AGG 0.654254 5_3:+58501735 None:intergenic
TGAGGAACTCAAGTACTACA+AGG 0.661289 5_3:-58501857 Msa0820850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCCTAAATATAAAATTTGT+CGG - chr5_3:58501553-58501572 Msa0820850:three_prime_UTR 15.0%
!!! TCACTTCTTTTTTTATTATT+AGG - chr5_3:58501863-58501882 Msa0820850:CDS 15.0%
!!! CACTTCTTTTTTTATTATTA+GGG - chr5_3:58501864-58501883 Msa0820850:CDS 15.0%
!!! AAAAATTCCATTTTTTACTT+TGG - chr5_3:58502024-58502043 Msa0820850:intron 15.0%
!! AAATTATATAAAAATGACCA+AGG - chr5_3:58502459-58502478 Msa0820850:intron 15.0%
!!! TCTACATATCAATTTATTTT+AGG + chr5_3:58503646-58503665 None:intergenic 15.0%
!!! TACATATTTGTATCTATTTT+AGG - chr5_3:58503956-58503975 Msa0820850:intron 15.0%
!!! ACATATTTGTATCTATTTTA+GGG - chr5_3:58504017-58504036 Msa0820850:intron 15.0%
!!! CTTACATTTCTATTTTAAAT+AGG - chr5_3:58504362-58504381 Msa0820850:intron 15.0%
!! TCCTAAATATAAAATTTGTC+GGG - chr5_3:58501554-58501573 Msa0820850:three_prime_UTR 20.0%
!! ACAAATTAGAAGAAGAAAAA+TGG - chr5_3:58501724-58501743 Msa0820850:three_prime_UTR 20.0%
!! AGATTTACCAAAGTAAAAAA+TGG + chr5_3:58502034-58502053 None:intergenic 20.0%
!! AAAAGAGAGAAAATCTTTAT+TGG - chr5_3:58502267-58502286 Msa0820850:intron 20.0%
!!! TTTTTCATCTATTTTGATCA+GGG + chr5_3:58502307-58502326 None:intergenic 20.0%
!! TGATCAAAATAGATGAAAAA+CGG - chr5_3:58502307-58502326 Msa0820850:intron 20.0%
!! TCTACATATCAATTTATTGA+AGG + chr5_3:58503582-58503601 None:intergenic 20.0%
!! GTGATATTATGAAATTTATC+AGG - chr5_3:58503815-58503834 Msa0820850:intron 20.0%
!!! AGTAAAAAACTGATTTAGTA+TGG - chr5_3:58503981-58504000 Msa0820850:intron 20.0%
!!! TAATTTGCATTTTGATTTGT+TGG - chr5_3:58504145-58504164 Msa0820850:intron 20.0%
!! AAAGGGATTTAATAATGTTA+AGG + chr5_3:58504175-58504194 None:intergenic 20.0%
!! ATTAAGTTCATAAAGAATAC+TGG - chr5_3:58504531-58504550 Msa0820850:CDS 20.0%
!! CAAATCATATTATGAGATAA+TGG - chr5_3:58504920-58504939 Msa0820850:intron 20.0%
!! ACAAATACACTACTTTATTA+TGG + chr5_3:58505117-58505136 None:intergenic 20.0%
!!! TCCAGAATTAAATATACTTT+TGG - chr5_3:58505517-58505536 Msa0820850:intron 20.0%
!!! TCCAAAAGTATATTTAATTC+TGG + chr5_3:58505521-58505540 None:intergenic 20.0%
!!! TTGATATTGAAGTGTATTTT+TGG - chr5_3:58505872-58505891 Msa0820850:five_prime_UTR 20.0%
!! ACCCGACAAATTTTATATTT+AGG + chr5_3:58501558-58501577 None:intergenic 25.0%
!!! AAAGCTTGTTAACTCTTTTT+CGG - chr5_3:58501748-58501767 Msa0820850:three_prime_UTR 25.0%
! ATTGAATAACAGGGATAAAA+GGG + chr5_3:58501841-58501860 None:intergenic 25.0%
! TAAAATGAAGTAAACCAACA+TGG + chr5_3:58501988-58502007 None:intergenic 25.0%
!!! TTTGGTAAATCTTTAAAGCA+CGG - chr5_3:58502042-58502061 Msa0820850:intron 25.0%
!!! GTTTTTCATCTATTTTGATC+AGG + chr5_3:58502308-58502327 None:intergenic 25.0%
! ATAACTCTCCTAATTCAAAA+CGG + chr5_3:58502437-58502456 None:intergenic 25.0%
! TCGTTCTTAAATTATCGAAT+TGG - chr5_3:58502526-58502545 Msa0820850:CDS 25.0%
! AAATTATCGAATTGGAGAAT+AGG - chr5_3:58502534-58502553 Msa0820850:CDS 25.0%
! AAGTAGTTAAATAGGTGATT+TGG - chr5_3:58502618-58502637 Msa0820850:intron 25.0%
!!! ATTACCAGTTCTAAAATTTC+TGG - chr5_3:58502908-58502927 Msa0820850:intron 25.0%
! ATTGCTTGTATAATTACAGA+TGG - chr5_3:58503260-58503279 Msa0820850:intron 25.0%
!!! TTATTTCCTCTGTTTTTCTA+TGG - chr5_3:58503438-58503457 Msa0820850:intron 25.0%
!!! TATTTCCTCTGTTTTTCTAT+GGG - chr5_3:58503439-58503458 Msa0820850:intron 25.0%
! GAAGGATCATATAAGTTTAA+GGG + chr5_3:58503564-58503583 None:intergenic 25.0%
! TGAAGGATCATATAAGTTTA+AGG + chr5_3:58503565-58503584 None:intergenic 25.0%
! TCAATTCAACAGGAAAAAAA+GGG + chr5_3:58504192-58504211 None:intergenic 25.0%
! TTCAATTCAACAGGAAAAAA+AGG + chr5_3:58504193-58504212 None:intergenic 25.0%
! CATTCAAAATTCAATTCAAC+AGG + chr5_3:58504202-58504221 None:intergenic 25.0%
!! CTGTTGAATTGAATTTTGAA+TGG - chr5_3:58504200-58504219 Msa0820850:intron 25.0%
!!! TTTTGAATGGTATTGACTAA+TGG - chr5_3:58504213-58504232 Msa0820850:intron 25.0%
!! ATGTAATTAGCTCTTGATAT+GGG + chr5_3:58504721-58504740 None:intergenic 25.0%
!! AATGTAATTAGCTCTTGATA+TGG + chr5_3:58504722-58504741 None:intergenic 25.0%
!!! GATGATTTTAGGAAGAAATT+TGG + chr5_3:58504763-58504782 None:intergenic 25.0%
!!! CATCTCTTATTGATGATTTT+AGG + chr5_3:58504774-58504793 None:intergenic 25.0%
!! CATATTATGAGATAATGGTT+TGG - chr5_3:58504925-58504944 Msa0820850:intron 25.0%
! GAATTCGTTAAGAAACATAT+TGG - chr5_3:58505018-58505037 Msa0820850:intron 25.0%
! TGTGGATTTACAATATATGA+AGG - chr5_3:58505080-58505099 Msa0820850:intron 25.0%
!! TACAATATATGAAGGTATAC+AGG - chr5_3:58505088-58505107 Msa0820850:intron 25.0%
!!! GGTATCATCAGTTTTATTTT+AGG - chr5_3:58505203-58505222 Msa0820850:intron 25.0%
! CATTTCAACAAAGGAATAAT+AGG + chr5_3:58505229-58505248 None:intergenic 25.0%
!! GTATTTAATTTCTCACCTTT+AGG + chr5_3:58505403-58505422 None:intergenic 25.0%
!! TTTTTCGTAAGAACTACTAT+CGG + chr5_3:58505556-58505575 None:intergenic 25.0%
! ACAATTTATGTGTTCTCAAA+AGG + chr5_3:58505595-58505614 None:intergenic 25.0%
! AAGTACCTTCAAAACAAAAA+AGG - chr5_3:58505654-58505673 Msa0820850:intron 25.0%
!!! TGATATTAGAGAAAGTATTG+AGG - chr5_3:58505691-58505710 Msa0820850:intron 25.0%
! ATAAACTTGTCATAACAATG+AGG + chr5_3:58505834-58505853 None:intergenic 25.0%
! AATATCAAGATCTATTTGCT+AGG + chr5_3:58505860-58505879 None:intergenic 25.0%
!!! CATAAGCAAAACACTTTTTT+GGG + chr5_3:58505995-58506014 None:intergenic 25.0%
GATTGAATAACAGGGATAAA+AGG + chr5_3:58501842-58501861 None:intergenic 30.0%
GAAGTGAAGATTGAATAACA+GGG + chr5_3:58501850-58501869 None:intergenic 30.0%
AGAAGTGAAGATTGAATAAC+AGG + chr5_3:58501851-58501870 None:intergenic 30.0%
ATTGTTGCTCATCATCATAA+GGG - chr5_3:58502360-58502379 Msa0820850:intron 30.0%
!!! TGCTTTTTCCGTTTTGAATT+AGG - chr5_3:58502426-58502445 Msa0820850:intron 30.0%
TCGATAATTTAAGAACGAAC+AGG + chr5_3:58502524-58502543 None:intergenic 30.0%
TTAACTACTTGTAGCATGTT+TGG + chr5_3:58502608-58502627 None:intergenic 30.0%
CATGCTACAAGTAGTTAAAT+AGG - chr5_3:58502610-58502629 Msa0820850:intron 30.0%
TGAATCTGATTTCAGTTTCT+GGG - chr5_3:58502709-58502728 Msa0820850:intron 30.0%
ATGCATCTTCTATAGCTATA+TGG - chr5_3:58502835-58502854 Msa0820850:intron 30.0%
CATAAAAATGACAAGCAAAG+AGG + chr5_3:58502881-58502900 None:intergenic 30.0%
!! TCTTGTTTCTCATTTTTCAC+TGG + chr5_3:58503054-58503073 None:intergenic 30.0%
ATCCATATTTGTCTGATTAC+AGG - chr5_3:58503082-58503101 Msa0820850:intron 30.0%
AACCTGTAATCAGACAAATA+TGG + chr5_3:58503087-58503106 None:intergenic 30.0%
TATTGAAGTGGATAGAATTC+TGG - chr5_3:58503235-58503254 Msa0820850:intron 30.0%
AGATGGAAACTTAACCAAAT+CGG - chr5_3:58503277-58503296 Msa0820850:intron 30.0%
! TTTTAAACTCTACTAGCACT+TGG + chr5_3:58503539-58503558 None:intergenic 30.0%
CAGAATTCATTGTTACTAGA+TGG - chr5_3:58503913-58503932 Msa0820850:intron 30.0%
ATTCATTGTTACTAGATGGA+AGG - chr5_3:58503917-58503936 Msa0820850:intron 30.0%
TTTGGTCATACATCAAACTA+AGG - chr5_3:58504046-58504065 Msa0820850:intron 30.0%
! TAATGGTTTTCAATGAATGC+AGG - chr5_3:58504230-58504249 Msa0820850:intron 30.0%
TAAGAATGAGACAGATGAAA+TGG - chr5_3:58504443-58504462 Msa0820850:intron 30.0%
AAGTTCATAAAGAATACTGG+CGG - chr5_3:58504534-58504553 Msa0820850:CDS 30.0%
ATCATTAGAGGAAAGATAAC+AGG + chr5_3:58504627-58504646 None:intergenic 30.0%
ATCTTTCCTCTAATGATTCA+CGG - chr5_3:58504630-58504649 Msa0820850:intron 30.0%
CAAATGTAACTTAAACAGCT+GGG - chr5_3:58504852-58504871 Msa0820850:intron 30.0%
TGATTAAGTTTCTACTTTGC+AGG - chr5_3:58504990-58505009 Msa0820850:intron 30.0%
TTCGTTAAGAAACATATTGG+AGG - chr5_3:58505021-58505040 Msa0820850:intron 30.0%
TATGGTCATCTGTAAATTCT+TGG - chr5_3:58505182-58505201 Msa0820850:intron 30.0%
GCAATGAAACATTTCAACAA+AGG + chr5_3:58505238-58505257 None:intergenic 30.0%
TCAACAATCAAAGTTAAGAC+AGG + chr5_3:58505260-58505279 None:intergenic 30.0%
TATTGAAAGACTATGCACTA+AGG + chr5_3:58505439-58505458 None:intergenic 30.0%
CTTTCAATAGATGAGAAACA+AGG - chr5_3:58505450-58505469 Msa0820850:intron 30.0%
!! ATAGTTGGTTTCTGGTTATA+CGG - chr5_3:58505475-58505494 Msa0820850:intron 30.0%
CTGGAAAGAATCAATAAACA+AGG + chr5_3:58505502-58505521 None:intergenic 30.0%
ACTACTATCGGACATTTATA+AGG + chr5_3:58505544-58505563 None:intergenic 30.0%
!!! GCATAAGCAAAACACTTTTT+TGG + chr5_3:58505996-58506015 None:intergenic 30.0%
! CTCTTTCAAGTATTCCACTT+TGG + chr5_3:58501697-58501716 None:intergenic 35.0%
GTATTTCATGTCTACCATGT+TGG - chr5_3:58501971-58501990 Msa0820850:intron 35.0%
!! AAATCTTTAAAGCACGGACA+TGG - chr5_3:58502048-58502067 Msa0820850:intron 35.0%
ATACATGTCAGTATCGTGTT+CGG + chr5_3:58502077-58502096 None:intergenic 35.0%
AACACGATACTGACATGTAT+CGG - chr5_3:58502077-58502096 Msa0820850:intron 35.0%
GAAATGAAGATGCACAATCA+TGG - chr5_3:58502196-58502215 Msa0820850:CDS 35.0%
! TCTCTTTTCTACAACCTAGT+GGG + chr5_3:58502255-58502274 None:intergenic 35.0%
GATTGTTGCTCATCATCATA+AGG - chr5_3:58502359-58502378 Msa0820850:intron 35.0%
! ATCATAAGGGTATGTTTGCA+TGG - chr5_3:58502373-58502392 Msa0820850:intron 35.0%
ATAAAAATGACCAAGGCATG+AGG - chr5_3:58502466-58502485 Msa0820850:intron 35.0%
ACTGAAATCAGATTCACTGA+AGG + chr5_3:58502705-58502724 None:intergenic 35.0%
GTGAATCTGATTTCAGTTTC+TGG - chr5_3:58502708-58502727 Msa0820850:intron 35.0%
CATAACAGAATCTTGCATTG+AGG + chr5_3:58502743-58502762 None:intergenic 35.0%
ACCAAGCATAGGTGTTTAAT+CGG + chr5_3:58502769-58502788 None:intergenic 35.0%
!!! TGGTCCAGAAATTTTAGAAC+TGG + chr5_3:58502915-58502934 None:intergenic 35.0%
! TAAACCTTTTGTGTGTTTGC+AGG - chr5_3:58503206-58503225 Msa0820850:intron 35.0%
TGCAGGTTTGAATATTGAAG+TGG - chr5_3:58503223-58503242 Msa0820850:intron 35.0%
! AATATATACCTCCACCGATT+TGG + chr5_3:58503294-58503313 None:intergenic 35.0%
! CTAGTATCTTCCTCCTTTTT+AGG - chr5_3:58503414-58503433 Msa0820850:intron 35.0%
AGGAAATAAGCCTAAAAAGG+AGG + chr5_3:58503427-58503446 None:intergenic 35.0%
CAGAGGAAATAAGCCTAAAA+AGG + chr5_3:58503430-58503449 None:intergenic 35.0%
! GTTTTCCCATAGAAAAACAG+AGG + chr5_3:58503447-58503466 None:intergenic 35.0%
TCTTGAAGAGTTAATCGAGA+AGG - chr5_3:58503753-58503772 Msa0820850:intron 35.0%
CTTGAAGAGTTAATCGAGAA+GGG - chr5_3:58503754-58503773 Msa0820850:intron 35.0%
!!! TCTATTTTAGGGTCCTGATT+TGG - chr5_3:58504028-58504047 Msa0820850:intron 35.0%
GTTTGATGTATGACCAAATC+AGG + chr5_3:58504044-58504063 None:intergenic 35.0%
GAATGCAGGCTTAACAAAAA+AGG - chr5_3:58504244-58504263 Msa0820850:intron 35.0%
AGTTCATAAAGAATACTGGC+GGG - chr5_3:58504535-58504554 Msa0820850:CDS 35.0%
AAGATAACAGGTTCTGTGAT+AGG + chr5_3:58504615-58504634 None:intergenic 35.0%
TTGCAAACACTTAACAGCTA+TGG + chr5_3:58504835-58504854 None:intergenic 35.0%
GCAAATGTAACTTAAACAGC+TGG - chr5_3:58504851-58504870 Msa0820850:intron 35.0%
!! TGACATCATTGGCTTGATAT+AGG + chr5_3:58504893-58504912 None:intergenic 35.0%
TTTGCAATGACTGACATCAT+TGG + chr5_3:58504904-58504923 None:intergenic 35.0%
GCAGAAATACATGCCAAAAT+TGG - chr5_3:58505312-58505331 Msa0820850:intron 35.0%
GAAATACATGCCAAAATTGG+CGG - chr5_3:58505315-58505334 Msa0820850:intron 35.0%
ATGCACTAAGGTTCATCATA+CGG + chr5_3:58505427-58505446 None:intergenic 35.0%
GTATAACCAGAAACCAACTA+TGG + chr5_3:58505476-58505495 None:intergenic 35.0%
!!! CTGTGCCTTTTTTGTTTTGA+AGG + chr5_3:58505662-58505681 None:intergenic 35.0%
CGTTATCATTTCTTGACCTT+TGG + chr5_3:58505749-58505768 None:intergenic 35.0%
!!! TGAAGTGTATTTTTGGCAGT+TGG - chr5_3:58505879-58505898 Msa0820850:five_prime_UTR 35.0%
TCAGAGTCAAAAGTGGTGAT+CGG + chr5_3:58501623-58501642 None:intergenic 40.0%
ACACGATACTGACATGTATC+GGG - chr5_3:58502078-58502097 Msa0820850:intron 40.0%
TTCCTCAACACACAAATCAC+AGG + chr5_3:58502179-58502198 None:intergenic 40.0%
GAAGATGCACAATCATGGTA+TGG - chr5_3:58502201-58502220 Msa0820850:CDS 40.0%
TTCTACAACCTAGTGGGATA+AGG + chr5_3:58502249-58502268 None:intergenic 40.0%
! CTCTCTTTTCTACAACCTAG+TGG + chr5_3:58502256-58502275 None:intergenic 40.0%
! ATAAGGGTATGTTTGCATGG+AGG - chr5_3:58502376-58502395 Msa0820850:intron 40.0%
! TAAGGGTATGTTTGCATGGA+GGG - chr5_3:58502377-58502396 Msa0820850:intron 40.0%
! TATGTTTGCATGGAGGGTTT+TGG - chr5_3:58502383-58502402 Msa0820850:intron 40.0%
ATGGAGGAGTTTGAAAGGAA+AGG + chr5_3:58502585-58502604 None:intergenic 40.0%
TTTGGATGGAGGAGTTTGAA+AGG + chr5_3:58502590-58502609 None:intergenic 40.0%
CTACTTGTAGCATGTTTGGA+TGG + chr5_3:58502604-58502623 None:intergenic 40.0%
AAGAGGTAACGCATAAGCAT+AGG + chr5_3:58502864-58502883 None:intergenic 40.0%
GCAGCTGCAATATACTTTCT+TGG - chr5_3:58502988-58503007 Msa0820850:intron 40.0%
! GCAATATACTTTCTTGGTGC+AGG - chr5_3:58502994-58503013 Msa0820850:intron 40.0%
! AGTGGTGGAAAGAAAGCTAA+TGG - chr5_3:58503018-58503037 Msa0820850:intron 40.0%
ATTACAGGTTACCTCTTGTC+TGG - chr5_3:58503097-58503116 Msa0820850:intron 40.0%
!! TGGATTGACTTGGAAATGAC+TGG - chr5_3:58503117-58503136 Msa0820850:intron 40.0%
!! AGAATGTGTTACTTCGAGAG+TGG - chr5_3:58503149-58503168 Msa0820850:intron 40.0%
GATCAGTGCATTGAAACTTC+TGG - chr5_3:58503182-58503201 Msa0820850:intron 40.0%
CAAACCTGCAAACACACAAA+AGG + chr5_3:58503213-58503232 None:intergenic 40.0%
TGGAAACTTAACCAAATCGG+TGG - chr5_3:58503280-58503299 Msa0820850:intron 40.0%
AAACTTAACCAAATCGGTGG+AGG - chr5_3:58503283-58503302 Msa0820850:CDS 40.0%
GAAGATTGTCTTCTTGCATC+AGG - chr5_3:58503355-58503374 Msa0820850:intron 40.0%
CTTACAAGCACCTAAATCTC+AGG + chr5_3:58503494-58503513 None:intergenic 40.0%
TGAAAGAGAAGCTGAAGAAC+AGG - chr5_3:58504286-58504305 Msa0820850:CDS 40.0%
CATCTATATGCAGAGATGCT+GGG + chr5_3:58504497-58504516 None:intergenic 40.0%
CAGCATCTCTGCATATAGAT+GGG - chr5_3:58504496-58504515 Msa0820850:CDS 40.0%
CTAACACCGTGAATCATTAG+AGG + chr5_3:58504639-58504658 None:intergenic 40.0%
CTTGATATGGGATCACAAAC+TGG + chr5_3:58504709-58504728 None:intergenic 40.0%
GATCGTTTCTCTACAGAATG+TGG - chr5_3:58504793-58504812 Msa0820850:intron 40.0%
!! CATTGGCTTGATATAGGAGT+AGG + chr5_3:58504887-58504906 None:intergenic 40.0%
AGGTACTTACAAACCTCTCT+TGG - chr5_3:58505041-58505060 Msa0820850:intron 40.0%
GGCAGGAAATTCGATATATG+TGG - chr5_3:58505062-58505081 Msa0820850:intron 40.0%
!! CATCGATTCACGTGTTGATA+TGG - chr5_3:58505164-58505183 Msa0820850:intron 40.0%
TGCGAAATCGAAGTAAAGAC+AGG + chr5_3:58505295-58505314 None:intergenic 40.0%
ATGAGAAACAAGGCCATAGT+TGG - chr5_3:58505460-58505479 Msa0820850:intron 40.0%
! ACAAAAAAGGCACAGAGCTT+TGG - chr5_3:58505667-58505686 Msa0820850:intron 40.0%
TGAGGAACTCAAGTACTACA+AGG - chr5_3:58505709-58505728 Msa0820850:intron 40.0%
AGTCAAAAGTGGTGATCGGT+GGG + chr5_3:58501619-58501638 None:intergenic 45.0%
CACTCACTCAGAGTCAAAAG+TGG + chr5_3:58501630-58501649 None:intergenic 45.0%
GAAAAGAAACTGCGCCAAAG+TGG - chr5_3:58501680-58501699 Msa0820850:three_prime_UTR 45.0%
AGGAAGAGAAGGAGGTTGAA+TGG + chr5_3:58501801-58501820 None:intergenic 45.0%
ATACCAGAAGGAAGAGAAGG+AGG + chr5_3:58501809-58501828 None:intergenic 45.0%
AGCATACCAGAAGGAAGAGA+AGG + chr5_3:58501812-58501831 None:intergenic 45.0%
CACGATACTGACATGTATCG+GGG - chr5_3:58502079-58502098 Msa0820850:intron 45.0%
!! ATCTGAAGTGTCGATGCTAC+AGG - chr5_3:58502119-58502138 Msa0820850:intron 45.0%
!! TCTGAAGTGTCGATGCTACA+GGG - chr5_3:58502120-58502139 Msa0820850:intron 45.0%
! AGCCTGTGATTTGTGTGTTG+AGG - chr5_3:58502174-58502193 Msa0820850:intron 45.0%
!!! TTTGCATGGAGGGTTTTGGA+GGG - chr5_3:58502387-58502406 Msa0820850:intron 45.0%
TTTGGAGGGAAAGGAAAGGA+TGG - chr5_3:58502401-58502420 Msa0820850:intron 45.0%
AGCTTAATGTCCTCATGCCT+TGG + chr5_3:58502479-58502498 None:intergenic 45.0%
CTTGTAGCATGTTTGGATGG+AGG + chr5_3:58502601-58502620 None:intergenic 45.0%
TAAGTGTTCCAGAGCCTAAG+TGG - chr5_3:58502643-58502662 Msa0820850:intron 45.0%
AAGTGTTCCAGAGCCTAAGT+GGG - chr5_3:58502644-58502663 Msa0820850:intron 45.0%
GCCGATTAAACACCTATGCT+TGG - chr5_3:58502765-58502784 Msa0820850:intron 45.0%
ACTGATGACTCAACGACCAA+AGG + chr5_3:58502794-58502813 None:intergenic 45.0%
TCTGGACCAATGCTTACATG+TGG - chr5_3:58502926-58502945 Msa0820850:intron 45.0%
ACACAGCCACATGTAAGCAT+TGG + chr5_3:58502935-58502954 None:intergenic 45.0%
! TACTTTCTTGGTGCAGGTAG+TGG - chr5_3:58503000-58503019 Msa0820850:intron 45.0%
ACCTCTTGTCTGGATTGACT+TGG - chr5_3:58503107-58503126 Msa0820850:intron 45.0%
TCCAAGTCAATCCAGACAAG+AGG + chr5_3:58503111-58503130 None:intergenic 45.0%
GGAAGATACTAGCTAGAGAC+TGG + chr5_3:58503406-58503425 None:intergenic 45.0%
AAGCACCTAAATCTCAGGCA+AGG + chr5_3:58503489-58503508 None:intergenic 45.0%
! CACCCTTATTTGAAGGAGGA+GGG - chr5_3:58503861-58503880 Msa0820850:intron 45.0%
! ACCCTTATTTGAAGGAGGAG+GGG - chr5_3:58503862-58503881 Msa0820850:intron 45.0%
TCCCCTCCTCCTTCAAATAA+GGG + chr5_3:58503866-58503885 None:intergenic 45.0%
TTCCCCTCCTCCTTCAAATA+AGG + chr5_3:58503867-58503886 None:intergenic 45.0%
!! CAAACTAAGGAGTGCCTTGA+CGG - chr5_3:58504059-58504078 Msa0820850:intron 45.0%
!! AAACTAAGGAGTGCCTTGAC+GGG - chr5_3:58504060-58504079 Msa0820850:intron 45.0%
AAAAGTCATCACGCTGCTAG+TGG - chr5_3:58504098-58504117 Msa0820850:intron 45.0%
AGCACGTCAATCACATGGTA+TGG + chr5_3:58504327-58504346 None:intergenic 45.0%
! AAGAGAGCACGTCAATCACA+TGG + chr5_3:58504332-58504351 None:intergenic 45.0%
! ATTGACGTGCTCTCTTTTCG+TGG - chr5_3:58504336-58504355 Msa0820850:CDS 45.0%
! TTGACGTGCTCTCTTTTCGT+GGG - chr5_3:58504337-58504356 Msa0820850:CDS 45.0%
CCATCTATATGCAGAGATGC+TGG + chr5_3:58504498-58504517 None:intergenic 45.0%
CCAGCATCTCTGCATATAGA+TGG - chr5_3:58504495-58504514 Msa0820850:CDS 45.0%
TAAAGAATACTGGCGGGACT+CGG - chr5_3:58504541-58504560 Msa0820850:CDS 45.0%
GGTCCTTGTTAGAGAACTCT+TGG - chr5_3:58504562-58504581 Msa0820850:intron 45.0%
CCTTGTTAGAGAACTCTTGG+CGG - chr5_3:58504565-58504584 Msa0820850:intron 45.0%
AGGGACAGTGTACAGGAAAA+AGG + chr5_3:58504954-58504973 None:intergenic 45.0%
TCAGTTGCCTCACAGATCAA+GGG + chr5_3:58504973-58504992 None:intergenic 45.0%
ATCAGTTGCCTCACAGATCA+AGG + chr5_3:58504974-58504993 None:intergenic 45.0%
ACTTACAAACCTCTCTTGGC+AGG - chr5_3:58505045-58505064 Msa0820850:intron 45.0%
ATCGAATTTCCTGCCAAGAG+AGG + chr5_3:58505057-58505076 None:intergenic 45.0%
! GAGAAGATCTCCGCCAATTT+TGG + chr5_3:58505328-58505347 None:intergenic 45.0%
TGCATTCGCTGGTATCCTAA+AGG - chr5_3:58505385-58505404 Msa0820850:intron 45.0%
! ACAAGGCCATAGTTGGTTTC+TGG - chr5_3:58505467-58505486 Msa0820850:intron 45.0%
!! GGCGAACATTTTCAAGCCAA+AGG - chr5_3:58505730-58505749 Msa0820850:intron 45.0%
! AAAGTGGTGATCGGTGGGTT+GGG + chr5_3:58501614-58501633 None:intergenic 50.0%
AAAAGTGGTGATCGGTGGGT+TGG + chr5_3:58501615-58501634 None:intergenic 50.0%
GAGTCAAAAGTGGTGATCGG+TGG + chr5_3:58501620-58501639 None:intergenic 50.0%
CAACCTCCTTCTCTTCCTTC+TGG - chr5_3:58501803-58501822 Msa0820850:intron 50.0%
GGGTAGAGTAGCATACCAGA+AGG + chr5_3:58501821-58501840 None:intergenic 50.0%
ACTGACATGTATCGGGGTAG+CGG - chr5_3:58502085-58502104 Msa0820850:intron 50.0%
! CAATCGAGCCTTATCCCACT+AGG - chr5_3:58502238-58502257 Msa0820850:CDS 50.0%
!! GTTTGCATGGAGGGTTTTGG+AGG - chr5_3:58502386-58502405 Msa0820850:intron 50.0%
!!! ATGGAGGGTTTTGGAGGGAA+AGG - chr5_3:58502392-58502411 Msa0820850:intron 50.0%
!!! GGGTTTTGGAGGGAAAGGAA+AGG - chr5_3:58502397-58502416 Msa0820850:intron 50.0%
AGTGTTCCAGAGCCTAAGTG+GGG - chr5_3:58502645-58502664 Msa0820850:intron 50.0%
TTCTTCCTGCATCCCCACTT+AGG + chr5_3:58502660-58502679 None:intergenic 50.0%
! CACCTATGCTTGGTAGCCTT+TGG - chr5_3:58502775-58502794 Msa0820850:intron 50.0%
GACCAAAGGCTACCAAGCAT+AGG + chr5_3:58502780-58502799 None:intergenic 50.0%
TGGTCGTTGAGTCATCAGTG+AGG - chr5_3:58502795-58502814 Msa0820850:intron 50.0%
! TTTCTTGGTGCAGGTAGTGG+TGG - chr5_3:58503003-58503022 Msa0820850:intron 50.0%
ACCTAAATCTCAGGCAAGGC+GGG + chr5_3:58503485-58503504 None:intergenic 50.0%
CACCTAAATCTCAGGCAAGG+CGG + chr5_3:58503486-58503505 None:intergenic 50.0%
! TCGCCTCCACCCTTATTTGA+AGG - chr5_3:58503854-58503873 Msa0820850:intron 50.0%
CCTCCTTCAAATAAGGGTGG+AGG + chr5_3:58503860-58503879 None:intergenic 50.0%
! CCTCCACCCTTATTTGAAGG+AGG - chr5_3:58503857-58503876 Msa0820850:intron 50.0%
CCTCCTCCTTCAAATAAGGG+TGG + chr5_3:58503863-58503882 None:intergenic 50.0%
! CCACCCTTATTTGAAGGAGG+AGG - chr5_3:58503860-58503879 Msa0820850:intron 50.0%
CCGCCAAGAGTTCTCTAACA+AGG + chr5_3:58504568-58504587 None:intergenic 50.0%
CAGATCAAGGGACAGTGTAC+AGG + chr5_3:58504961-58504980 None:intergenic 50.0%
ACACTGTCCCTTGATCTGTG+AGG - chr5_3:58504963-58504982 Msa0820850:intron 50.0%
TCTCAGCTCTTTGCATTCGC+TGG - chr5_3:58505374-58505393 Msa0820850:intron 50.0%
!! TGGGTCGGCTCATGGGTTTT+GGG + chr5_3:58501590-58501609 None:intergenic 55.0%
!! TTGGGTCGGCTCATGGGTTT+TGG + chr5_3:58501591-58501610 None:intergenic 55.0%
CTGACATGTATCGGGGTAGC+GGG - chr5_3:58502086-58502105 Msa0820850:intron 55.0%
!! ATCTCAGGCAAGGCGGGTTA+TGG + chr5_3:58503479-58503498 None:intergenic 55.0%
ACCCGCCTTGCCTGAGATTT+AGG - chr5_3:58503481-58503500 Msa0820850:CDS 55.0%
!! TAAGGAGTGCCTTGACGGGA+TGG - chr5_3:58504064-58504083 Msa0820850:intron 55.0%
!! AAGGAGTGCCTTGACGGGAT+GGG - chr5_3:58504065-58504084 Msa0820850:intron 55.0%
ACCATTCTCCCATCCCGTCA+AGG + chr5_3:58504076-58504095 None:intergenic 55.0%
GGCGGAGATCTTCTCTCATG+TGG - chr5_3:58505333-58505352 Msa0820850:intron 55.0%
!! GTTGGGTTGGGTCGGCTCAT+GGG + chr5_3:58501597-58501616 None:intergenic 60.0%
!! ATCGGTGGGTTGGGTTGGGT+CGG + chr5_3:58501605-58501624 None:intergenic 60.0%
!! GGTGATCGGTGGGTTGGGTT+GGG + chr5_3:58501609-58501628 None:intergenic 60.0%
!! TGGTGATCGGTGGGTTGGGT+TGG + chr5_3:58501610-58501629 None:intergenic 60.0%
CTGCATCCCCACTTAGGCTC+TGG + chr5_3:58502654-58502673 None:intergenic 60.0%
CAGAGCCTAAGTGGGGATGC+AGG - chr5_3:58502652-58502671 Msa0820850:intron 60.0%
GCCTTGACGGGATGGGAGAA+TGG - chr5_3:58504072-58504091 Msa0820850:intron 60.0%
!! GGTTGGGTTGGGTCGGCTCA+TGG + chr5_3:58501598-58501617 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 58501542 58506046 58501542 ID=Msa0820850;Name=Msa0820850
chr5_3 mRNA 58501542 58506046 58501542 ID=Msa0820850-mRNA-1;Parent=Msa0820850;Name=Msa0820850-mRNA-1;_AED=0.11;_eAED=0.11;_QI=201|1|1|1|0.87|0.77|9|260|239
chr5_3 exon 58501542 58501786 58501542 ID=Msa0820850-mRNA-1:exon:17801;Parent=Msa0820850-mRNA-1
chr5_3 exon 58501810 58501943 58501810 ID=Msa0820850-mRNA-1:exon:17800;Parent=Msa0820850-mRNA-1
chr5_3 exon 58502182 58502272 58502182 ID=Msa0820850-mRNA-1:exon:17799;Parent=Msa0820850-mRNA-1
chr5_3 exon 58502487 58502576 58502487 ID=Msa0820850-mRNA-1:exon:17798;Parent=Msa0820850-mRNA-1
chr5_3 exon 58503281 58503336 58503281 ID=Msa0820850-mRNA-1:exon:17797;Parent=Msa0820850-mRNA-1
chr5_3 exon 58503469 58503550 58503469 ID=Msa0820850-mRNA-1:exon:17796;Parent=Msa0820850-mRNA-1
chr5_3 exon 58504284 58504360 58504284 ID=Msa0820850-mRNA-1:exon:17795;Parent=Msa0820850-mRNA-1
chr5_3 exon 58504450 58504572 58504450 ID=Msa0820850-mRNA-1:exon:17794;Parent=Msa0820850-mRNA-1
chr5_3 exon 58505764 58506046 58505764 ID=Msa0820850-mRNA-1:exon:17793;Parent=Msa0820850-mRNA-1
chr5_3 five_prime_UTR 58505846 58506046 58505846 ID=Msa0820850-mRNA-1:five_prime_utr;Parent=Msa0820850-mRNA-1
chr5_3 CDS 58505764 58505845 58505764 ID=Msa0820850-mRNA-1:cds;Parent=Msa0820850-mRNA-1
chr5_3 CDS 58504450 58504572 58504450 ID=Msa0820850-mRNA-1:cds;Parent=Msa0820850-mRNA-1
chr5_3 CDS 58504284 58504360 58504284 ID=Msa0820850-mRNA-1:cds;Parent=Msa0820850-mRNA-1
chr5_3 CDS 58503469 58503550 58503469 ID=Msa0820850-mRNA-1:cds;Parent=Msa0820850-mRNA-1
chr5_3 CDS 58503281 58503336 58503281 ID=Msa0820850-mRNA-1:cds;Parent=Msa0820850-mRNA-1
chr5_3 CDS 58502487 58502576 58502487 ID=Msa0820850-mRNA-1:cds;Parent=Msa0820850-mRNA-1
chr5_3 CDS 58502182 58502272 58502182 ID=Msa0820850-mRNA-1:cds;Parent=Msa0820850-mRNA-1
chr5_3 CDS 58501825 58501943 58501825 ID=Msa0820850-mRNA-1:cds;Parent=Msa0820850-mRNA-1
chr5_3 three_prime_UTR 58501810 58501824 58501810 ID=Msa0820850-mRNA-1:three_prime_utr;Parent=Msa0820850-mRNA-1
chr5_3 three_prime_UTR 58501542 58501786 58501542 ID=Msa0820850-mRNA-1:three_prime_utr;Parent=Msa0820850-mRNA-1
Gene Sequence

>Msa0820850

ATGGAAAAGCTTGTTAACTCTTTTTCGGTGTTAGAACTTGACGCTGACGATAACACCATTCAACCTCCTTCTCTTCCTTCTGGTAGTGGTGGAAAGAAAGCTAATGGCAAAGCTTTACCAGTGAAAAATGAGAAACAAGATCAACACAATCCATATTTGTCTGATTACAGGTTACCTCTTGTCTGGATTGACTTGGAAATGACTGGTTTGAATATTGAAGTGGATAGAATTCTGGAGATTGCTTGTATAATTACAGATGGAAACTTAACCAAATCGGTGGAGGGTCCTGATTTGGTCATACATCAAACTAAGGAGTGCCTTGACGGGATGGGAGAATGGTGTAAAAGTCATCACGCTGCTAGTGGCTTAACAAAAAAGGTTCTTCAAAGTACAATTAGTGAAAGAGAAGCTGAAGAACAGGTTATTGAATTCGTTAAGAAACATATTGGAGGTACTTACAAACCTCTCTTGGCAGGAAATTCGATATATGTGGATTTACAATATATGAAGAAATACATGCCAAAATTGGCGGAGATCTTCTCTCATGTGGTTGTTGATGTTAGTAGTATCTCAGCTCTTTGCATTCGCTGGTATCCTAAAGATCAGAAAAAAGTACCTTCAAAACAAAAAAGGCACAGAGCTTTGGATGATATTAGAGAAAGTATTGAGGAACTCAAGTACTACAAGGCGAACATTTTCAAGCCAAAGGTCAAGAAATGA

Protein sequence

>Msa0820850

MEKLVNSFSVLELDADDNTIQPPSLPSGSGGKKANGKALPVKNEKQDQHNPYLSDYRLPLVWIDLEMTGLNIEVDRILEIACIITDGNLTKSVEGPDLVIHQTKECLDGMGEWCKSHHAASGLTKKVLQSTISEREAEEQVIEFVKKHIGGTYKPLLAGNSIYVDLQYMKKYMPKLAEIFSHVVVDVSSISALCIRWYPKDQKKVPSKQKRHRALDDIRESIEELKYYKANIFKPKVKK*