AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0826370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826370 MtrunA17_Chr5g0447941 97.756 312 7 0 1 312 1 312 0.0 631
Msa0826370 MtrunA17_Chr5g0447951 97.436 312 8 0 1 312 1 312 0.0 630
Msa0826370 MtrunA17_Chr5g0447961 97.436 312 8 0 1 312 1 312 0.0 630
Msa0826370 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 9.32e-163 456
Msa0826370 MtrunA17_Chr1g0173621 62.951 305 110 3 1 302 1 305 8.29e-137 390
Msa0826370 MtrunA17_Chr6g0479981 49.835 303 145 5 1 300 1 299 5.19e-96 286
Msa0826370 MtrunA17_Chr6g0480011 49.677 310 137 8 1 300 1 301 3.63e-95 284
Msa0826370 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 8.75e-92 275
Msa0826370 MtrunA17_Chr8g0368921 42.606 284 160 2 19 300 15 297 1.45e-74 231
Msa0826370 MtrunA17_Chr4g0018921 41.053 285 163 4 18 300 12 293 1.13e-71 224
Msa0826370 MtrunA17_Chr7g0239701 43.382 272 142 3 49 311 47 315 1.30e-71 224
Msa0826370 MtrunA17_Chr8g0368931 42.708 288 154 4 19 302 15 295 1.83e-69 218
Msa0826370 MtrunA17_Chr4g0009531 43.554 287 147 5 19 300 15 291 3.65e-66 210
Msa0826370 MtrunA17_Chr4g0009581 41.967 305 149 6 19 312 16 303 1.67e-63 202
Msa0826370 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 8.82e-60 189
Msa0826370 MtrunA17_Chr4g0036051 38.762 307 173 6 15 310 6 308 9.00e-58 188
Msa0826370 MtrunA17_Chr7g0243551 37.956 274 162 5 20 292 23 289 1.42e-57 187
Msa0826370 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 1.39e-50 165
Msa0826370 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 3.61e-49 161
Msa0826370 MtrunA17_Chr4g0009621 42.922 219 113 2 82 300 1 207 7.60e-44 149
Msa0826370 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 9.23e-26 99.0
Msa0826370 MtrunA17_Chr4g0036291 45.872 109 54 3 1 107 1 106 5.88e-24 94.0
Msa0826370 MtrunA17_Chr4g0036251 47.222 108 48 3 1 107 1 100 7.62e-24 93.6
Msa0826370 MtrunA17_Chr4g0036311 44.037 109 56 3 1 107 1 106 9.40e-24 93.6
Msa0826370 MtrunA17_Chr3g0095421 26.140 329 159 13 15 285 42 344 7.83e-17 80.1
Msa0826370 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 5.61e-16 72.4
Msa0826370 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 8.29e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826370 AT1G59960.1 53.896 308 131 6 1 300 1 305 1.23e-112 329
Msa0826370 AT1G59950.1 56.250 288 116 5 20 300 15 299 1.17e-105 311
Msa0826370 AT2G37770.2 44.056 286 149 4 19 300 15 293 9.51e-77 237
Msa0826370 AT2G37790.1 43.357 286 151 4 19 300 15 293 2.85e-76 236
Msa0826370 AT2G37760.4 42.612 291 140 5 19 299 15 288 7.55e-72 224
Msa0826370 AT2G37760.3 42.612 291 140 5 19 299 15 288 7.55e-72 224
Msa0826370 AT5G62420.1 42.606 284 157 4 20 300 14 294 1.42e-71 224
Msa0826370 AT5G01670.1 41.549 284 157 6 19 300 23 299 3.32e-71 223
Msa0826370 AT2G37760.5 43.056 288 137 5 19 296 15 285 6.57e-71 221
Msa0826370 AT2G37760.2 42.561 289 139 5 19 297 15 286 5.39e-70 220
Msa0826370 AT2G37760.1 42.561 289 139 5 19 297 15 286 5.39e-70 220
Msa0826370 AT3G53880.1 41.696 283 160 3 19 300 15 293 2.22e-69 218
Msa0826370 AT3G53880.2 41.786 280 152 4 19 294 15 287 6.06e-67 212
Msa0826370 AT2G21260.1 39.041 292 163 6 15 295 6 293 6.61e-66 209
Msa0826370 AT5G01670.2 37.942 311 157 7 19 300 23 326 2.98e-65 209
Msa0826370 AT2G21250.1 37.785 307 176 6 15 310 6 308 1.30e-64 206
Msa0826370 AT2G37760.6 42.276 246 121 4 62 297 6 240 1.06e-57 187
Msa0826370 AT2G37760.7 42.276 246 121 4 62 297 6 240 1.06e-57 187
Msa0826370 AT2G37770.1 46.701 197 95 3 19 212 15 204 3.95e-53 176
Msa0826370 AT2G21250.2 41.905 210 111 5 15 217 6 211 1.33e-47 160
Msa0826370 AT2G21260.2 35.455 220 129 5 87 295 8 225 8.40e-41 142
Msa0826370 AT1G06690.1 27.336 289 154 9 35 285 85 355 6.48e-20 89.4
Msa0826370 AT5G53580.1 25.352 284 157 10 44 289 80 346 4.93e-16 78.2
Msa0826370 AT1G60680.1 26.284 331 177 16 15 300 14 322 8.12e-13 68.6
Msa0826370 AT1G60750.1 25.177 282 161 11 44 300 50 306 6.54e-11 62.8

Find 72 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACACAAATTT+TGG 0.147232 5_3:-66715113 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.292412 5_3:-66714945 None:intergenic
TGGACTTGTACTTGATTCAT+TGG 0.300645 5_3:+66714548 Msa0826370:CDS
ATTGGAAATGTAAACTTTCC+AGG 0.315067 5_3:-66714586 None:intergenic
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_3:-66714124 None:intergenic
AAAATTTGTGTATCTTTGAT+TGG 0.361005 5_3:+66715115 Msa0826370:CDS
TCATTCTCCATAACTTCATT+TGG 0.362803 5_3:-66714973 None:intergenic
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_3:-66714078 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 5_3:+66714629 Msa0826370:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_3:+66714676 Msa0826370:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 5_3:-66714628 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 5_3:-66714604 None:intergenic
AGTCCGGGCTTGGTTGGTCC+AGG 0.391423 5_3:-66715195 None:intergenic
CTTGTTGTTTCTGTTGAGCT+TGG 0.395422 5_3:+66715305 Msa0826370:three_prime_UTR
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_3:+66715034 Msa0826370:CDS
TCTTTCCTTATCATAACTCT+TGG 0.404407 5_3:-66715085 None:intergenic
TTGTTGTTTCTGTTGAGCTT+GGG 0.406573 5_3:+66715306 Msa0826370:three_prime_UTR
ATCATAGAGGTCATTGAGTC+CGG 0.411816 5_3:-66715211 None:intergenic
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 5_3:+66714630 Msa0826370:CDS
TTGAAAGAGGCAATTGAACT+TGG 0.422526 5_3:+66714195 Msa0826370:CDS
TGTTCCCAAGAGTTATGATA+AGG 0.428240 5_3:+66715080 Msa0826370:CDS
TTTGATACTGCTGCTGCCTA+TGG 0.438326 5_3:+66714147 Msa0826370:CDS
CTTTCCTTATCATAACTCTT+GGG 0.442857 5_3:-66715084 None:intergenic
GAGGTCATTGAGTCCGGGCT+TGG 0.446240 5_3:-66715205 None:intergenic
CAGGGGACCAAATGAAGTTA+TGG 0.449659 5_3:+66714966 Msa0826370:CDS
AAGCAAAATCGTTTGATCCC+TGG 0.455139 5_3:+66715177 Msa0826370:CDS
CGTTGAGGAAAGGTGCAAGC+AGG 0.464952 5_3:+66714947 Msa0826370:CDS
GACTCTTCAACTAGACTACT+TGG 0.469433 5_3:+66714528 Msa0826370:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.474588 5_3:-66714946 None:intergenic
TTGTTGTTGTTGGGTTGGGA+AGG 0.479135 5_3:-66713965 None:intergenic
ATCCCTGGACCAACCAAGCC+CGG 0.482612 5_3:+66715192 Msa0826370:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_3:-66714656 None:intergenic
TGTTGGTAAGAACCTTTGTT+GGG 0.494495 5_3:-66714011 None:intergenic
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_3:+66714658 Msa0826370:CDS
TCTTGGTGAGGCTTTGAAAG+AGG 0.504118 5_3:+66714182 Msa0826370:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_3:-66714077 None:intergenic
AGTACTAATGTAAAATAACT+TGG 0.506920 5_3:-66715382 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 5_3:+66714622 Msa0826370:CDS
AGCTACATAACTCACTCAAA+GGG 0.524563 5_3:+66713923 Msa0826370:five_prime_UTR
AAGCTACATAACTCACTCAA+AGG 0.526311 5_3:+66713922 Msa0826370:five_prime_UTR
CTTCAATTGACTAGATGTGT+TGG 0.531137 5_3:-66714028 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.535658 5_3:+66714047 Msa0826370:CDS
GTCCGGGCTTGGTTGGTCCA+GGG 0.541777 5_3:-66715194 None:intergenic
TATGGTTCAGAACAAGCTCT+TGG 0.542359 5_3:+66714165 Msa0826370:CDS
AAGAGCTTGTTCTGAACCAT+AGG 0.546096 5_3:-66714163 None:intergenic
TCATTGAGTCCGGGCTTGGT+TGG 0.547327 5_3:-66715201 None:intergenic
GTTGAGGAAAGGTGCAAGCA+GGG 0.550606 5_3:+66714948 Msa0826370:CDS
AAGATGCCTGTGGTTGGAAT+GGG 0.555328 5_3:+66714048 Msa0826370:CDS
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 5_3:+66714568 Msa0826370:CDS
TCATAGAGGTCATTGAGTCC+GGG 0.574712 5_3:-66715210 None:intergenic
GTGTTGGTAAGAACCTTTGT+TGG 0.577970 5_3:-66714012 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 5_3:+66714863 Msa0826370:intron
GCTGATCCCATTCCAACCAC+AGG 0.587516 5_3:-66714054 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_3:+66714114 Msa0826370:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5_3:+66714639 Msa0826370:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5_3:+66715048 Msa0826370:CDS
TGAATTACTTGATTGACTGC+AGG 0.596137 5_3:-66714757 None:intergenic
GTTTACATTTCCAATTGATG+TGG 0.608506 5_3:+66714594 Msa0826370:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_3:-66714076 None:intergenic
CAATTGAAGATGCCTGTGGT+TGG 0.621459 5_3:+66714042 Msa0826370:CDS
CCAACAACAACAAAACAACA+TGG 0.622762 5_3:+66713975 Msa0826370:exon
AGAGCAGGAATAACAAGATG+AGG 0.624425 5_3:-66714276 None:intergenic
TTGAGGAAAGGTGCAAGCAG+GGG 0.624444 5_3:+66714949 Msa0826370:CDS
TAGTGTTGAAATCCCAACAA+AGG 0.632514 5_3:+66713999 Msa0826370:CDS
TTTCCTCAACGGGGAAAATG+CGG 0.632608 5_3:-66714935 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5_3:+66715003 Msa0826370:CDS
TTCAGAACAAGCTCTTGGTG+AGG 0.637219 5_3:+66714170 Msa0826370:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 5_3:-66714571 None:intergenic
ATTGACTGCAGGAAGAACAG+TGG 0.718468 5_3:-66714746 None:intergenic
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5_3:+66714642 Msa0826370:CDS
GCTTGCACCTTTCCTCAACG+GGG 0.723595 5_3:-66714944 None:intergenic
TAGTCAATTGAAGATGCCTG+TGG 0.737799 5_3:+66714038 Msa0826370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAAATTAATCAAAACTT+AGG - chr5_3:66714792-66714811 None:intergenic 15.0%
!! CTAAAAATTAATCAAAACTT+AGG - chr5_3:66714792-66714811 None:intergenic 15.0%
!!! AATCAAAGATACACAAATTT+TGG - chr5_3:66715116-66715135 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr5_3:66715115-66715134 Msa0826370:CDS 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG - chr5_3:66715227-66715246 None:intergenic 20.0%
!!! AACAGAAAAGATAGATTTTA+AGG - chr5_3:66715272-66715291 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG - chr5_3:66715385-66715404 None:intergenic 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr5_3:66715116-66715135 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr5_3:66715115-66715134 Msa0826370:CDS 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG - chr5_3:66715227-66715246 None:intergenic 20.0%
!!! AACAGAAAAGATAGATTTTA+AGG - chr5_3:66715272-66715291 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG - chr5_3:66715385-66715404 None:intergenic 20.0%
!!! TTTTTGTTACTTCCAAACTT+TGG + chr5_3:66714238-66714257 Msa0826370:CDS 25.0%
!!! TTTTGTTACTTCCAAACTTT+GGG + chr5_3:66714239-66714258 Msa0826370:CDS 25.0%
! AAATACACTTATTGAGATTC+TGG + chr5_3:66714486-66714505 Msa0826370:intron 25.0%
! CAATGAACTCATAAATGTAT+AGG + chr5_3:66714843-66714862 Msa0826370:intron 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG - chr5_3:66715259-66715278 None:intergenic 25.0%
!!! TTTTTGTTACTTCCAAACTT+TGG + chr5_3:66714238-66714257 Msa0826370:CDS 25.0%
!!! TTTTGTTACTTCCAAACTTT+GGG + chr5_3:66714239-66714258 Msa0826370:CDS 25.0%
! AAATACACTTATTGAGATTC+TGG + chr5_3:66714486-66714505 Msa0826370:intron 25.0%
! CAATGAACTCATAAATGTAT+AGG + chr5_3:66714843-66714862 Msa0826370:intron 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG - chr5_3:66715259-66715278 None:intergenic 25.0%
!!! CATGTTGTTTTGTTGTTGTT+GGG - chr5_3:66713977-66713996 None:intergenic 30.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr5_3:66714253-66714272 None:intergenic 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr5_3:66714589-66714608 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr5_3:66714594-66714613 Msa0826370:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_3:66714630-66714649 Msa0826370:CDS 30.0%
TGAACTCATAAATGTATAGG+TGG + chr5_3:66714846-66714865 Msa0826370:intron 30.0%
TCATTCTCCATAACTTCATT+TGG - chr5_3:66714976-66714995 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_3:66715034-66715053 Msa0826370:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr5_3:66715087-66715106 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr5_3:66715088-66715107 None:intergenic 30.0%
CAAACTCGTTTCAAAAACAA+GGG - chr5_3:66715336-66715355 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG - chr5_3:66715337-66715356 None:intergenic 30.0%
!!! CATGTTGTTTTGTTGTTGTT+GGG - chr5_3:66713977-66713996 None:intergenic 30.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr5_3:66714253-66714272 None:intergenic 30.0%
ATTGGAAATGTAAACTTTCC+AGG - chr5_3:66714589-66714608 None:intergenic 30.0%
GTTTACATTTCCAATTGATG+TGG + chr5_3:66714594-66714613 Msa0826370:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_3:66714630-66714649 Msa0826370:CDS 30.0%
TGAACTCATAAATGTATAGG+TGG + chr5_3:66714846-66714865 Msa0826370:intron 30.0%
TCATTCTCCATAACTTCATT+TGG - chr5_3:66714976-66714995 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_3:66715034-66715053 Msa0826370:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr5_3:66715087-66715106 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr5_3:66715088-66715107 None:intergenic 30.0%
CAAACTCGTTTCAAAAACAA+GGG - chr5_3:66715336-66715355 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG - chr5_3:66715337-66715356 None:intergenic 30.0%
AAGCTACATAACTCACTCAA+AGG + chr5_3:66713922-66713941 Msa0826370:five_prime_UTR 35.0%
AGCTACATAACTCACTCAAA+GGG + chr5_3:66713923-66713942 Msa0826370:five_prime_UTR 35.0%
!!! TGTTTTGTTGTTGTTGGGTT+GGG - chr5_3:66713972-66713991 None:intergenic 35.0%
!!! TTGTTTTGTTGTTGTTGGGT+TGG - chr5_3:66713973-66713992 None:intergenic 35.0%
!!! CCATGTTGTTTTGTTGTTGT+TGG - chr5_3:66713978-66713997 None:intergenic 35.0%
CCAACAACAACAAAACAACA+TGG + chr5_3:66713975-66713994 Msa0826370:exon 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr5_3:66713999-66714018 Msa0826370:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr5_3:66714014-66714033 None:intergenic 35.0%
CTTCAATTGACTAGATGTGT+TGG - chr5_3:66714031-66714050 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_3:66714079-66714098 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_3:66714080-66714099 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_3:66714081-66714100 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_3:66714114-66714133 Msa0826370:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_3:66714127-66714146 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_3:66714195-66714214 Msa0826370:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - chr5_3:66714294-66714313 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr5_3:66714548-66714567 Msa0826370:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_3:66714622-66714641 Msa0826370:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_3:66714631-66714650 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_3:66714629-66714648 Msa0826370:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - chr5_3:66714760-66714779 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_3:66715048-66715067 Msa0826370:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr5_3:66715080-66715099 Msa0826370:CDS 35.0%
!! TTGTTGTTTCTGTTGAGCTT+GGG + chr5_3:66715306-66715325 Msa0826370:three_prime_UTR 35.0%
AAGCTACATAACTCACTCAA+AGG + chr5_3:66713922-66713941 Msa0826370:five_prime_UTR 35.0%
AGCTACATAACTCACTCAAA+GGG + chr5_3:66713923-66713942 Msa0826370:five_prime_UTR 35.0%
!!! TGTTTTGTTGTTGTTGGGTT+GGG - chr5_3:66713972-66713991 None:intergenic 35.0%
!!! TTGTTTTGTTGTTGTTGGGT+TGG - chr5_3:66713973-66713992 None:intergenic 35.0%
!!! CCATGTTGTTTTGTTGTTGT+TGG - chr5_3:66713978-66713997 None:intergenic 35.0%
CCAACAACAACAAAACAACA+TGG + chr5_3:66713975-66713994 Msa0826370:exon 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr5_3:66713999-66714018 Msa0826370:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr5_3:66714014-66714033 None:intergenic 35.0%
CTTCAATTGACTAGATGTGT+TGG - chr5_3:66714031-66714050 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_3:66714079-66714098 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_3:66714080-66714099 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_3:66714081-66714100 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_3:66714114-66714133 Msa0826370:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_3:66714127-66714146 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_3:66714195-66714214 Msa0826370:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - chr5_3:66714294-66714313 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr5_3:66714548-66714567 Msa0826370:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_3:66714622-66714641 Msa0826370:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_3:66714631-66714650 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_3:66714629-66714648 Msa0826370:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - chr5_3:66714760-66714779 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_3:66715048-66715067 Msa0826370:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr5_3:66715080-66715099 Msa0826370:CDS 35.0%
!! TTGTTGTTTCTGTTGAGCTT+GGG + chr5_3:66715306-66715325 Msa0826370:three_prime_UTR 35.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr5_3:66714015-66714034 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr5_3:66714038-66714057 Msa0826370:CDS 40.0%
! AAGAGCTTGTTCTGAACCAT+AGG - chr5_3:66714166-66714185 None:intergenic 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr5_3:66714165-66714184 Msa0826370:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_3:66714279-66714298 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr5_3:66714506-66714525 Msa0826370:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_3:66714528-66714547 Msa0826370:CDS 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_3:66714607-66714626 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_3:66714659-66714678 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_3:66714658-66714677 Msa0826370:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_3:66714676-66714695 Msa0826370:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_3:66715003-66715022 Msa0826370:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_3:66715177-66715196 Msa0826370:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG - chr5_3:66715214-66715233 None:intergenic 40.0%
!! CTTGTTGTTTCTGTTGAGCT+TGG + chr5_3:66715305-66715324 Msa0826370:three_prime_UTR 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr5_3:66714015-66714034 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr5_3:66714038-66714057 Msa0826370:CDS 40.0%
! AAGAGCTTGTTCTGAACCAT+AGG - chr5_3:66714166-66714185 None:intergenic 40.0%
TATGGTTCAGAACAAGCTCT+TGG + chr5_3:66714165-66714184 Msa0826370:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_3:66714279-66714298 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr5_3:66714506-66714525 Msa0826370:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_3:66714528-66714547 Msa0826370:CDS 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_3:66714607-66714626 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_3:66714659-66714678 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_3:66714658-66714677 Msa0826370:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_3:66714676-66714695 Msa0826370:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_3:66715003-66715022 Msa0826370:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_3:66715177-66715196 Msa0826370:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG - chr5_3:66715214-66715233 None:intergenic 40.0%
!! CTTGTTGTTTCTGTTGAGCT+TGG + chr5_3:66715305-66715324 Msa0826370:three_prime_UTR 40.0%
!! TTGTTGTTGTTGGGTTGGGA+AGG - chr5_3:66713968-66713987 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr5_3:66714042-66714061 Msa0826370:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_3:66714048-66714067 Msa0826370:CDS 45.0%
TTTGATACTGCTGCTGCCTA+TGG + chr5_3:66714147-66714166 Msa0826370:CDS 45.0%
TTCAGAACAAGCTCTTGGTG+AGG + chr5_3:66714170-66714189 Msa0826370:CDS 45.0%
!! TCTTGGTGAGGCTTTGAAAG+AGG + chr5_3:66714182-66714201 Msa0826370:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - chr5_3:66714574-66714593 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_3:66714639-66714658 Msa0826370:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - chr5_3:66714749-66714768 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - chr5_3:66714879-66714898 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + chr5_3:66714901-66714920 Msa0826370:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - chr5_3:66714938-66714957 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + chr5_3:66714966-66714985 Msa0826370:CDS 45.0%
TCATAGAGGTCATTGAGTCC+GGG - chr5_3:66715213-66715232 None:intergenic 45.0%
!! TTGTTGTTGTTGGGTTGGGA+AGG - chr5_3:66713968-66713987 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr5_3:66714042-66714061 Msa0826370:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_3:66714048-66714067 Msa0826370:CDS 45.0%
TTTGATACTGCTGCTGCCTA+TGG + chr5_3:66714147-66714166 Msa0826370:CDS 45.0%
TTCAGAACAAGCTCTTGGTG+AGG + chr5_3:66714170-66714189 Msa0826370:CDS 45.0%
!! TCTTGGTGAGGCTTTGAAAG+AGG + chr5_3:66714182-66714201 Msa0826370:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - chr5_3:66714574-66714593 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_3:66714639-66714658 Msa0826370:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - chr5_3:66714749-66714768 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - chr5_3:66714879-66714898 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + chr5_3:66714901-66714920 Msa0826370:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - chr5_3:66714938-66714957 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + chr5_3:66714966-66714985 Msa0826370:CDS 45.0%
TCATAGAGGTCATTGAGTCC+GGG - chr5_3:66715213-66715232 None:intergenic 45.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_3:66714047-66714066 Msa0826370:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_3:66714642-66714661 Msa0826370:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_3:66714863-66714882 Msa0826370:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + chr5_3:66714932-66714951 Msa0826370:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + chr5_3:66714937-66714956 Msa0826370:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - chr5_3:66714948-66714967 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_3:66714949-66714968 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + chr5_3:66714948-66714967 Msa0826370:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + chr5_3:66714949-66714968 Msa0826370:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_3:66714047-66714066 Msa0826370:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_3:66714642-66714661 Msa0826370:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_3:66714863-66714882 Msa0826370:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + chr5_3:66714932-66714951 Msa0826370:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + chr5_3:66714937-66714956 Msa0826370:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - chr5_3:66714948-66714967 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_3:66714949-66714968 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + chr5_3:66714948-66714967 Msa0826370:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + chr5_3:66714949-66714968 Msa0826370:CDS 50.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_3:66714057-66714076 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + chr5_3:66714568-66714587 Msa0826370:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - chr5_3:66714947-66714966 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + chr5_3:66714947-66714966 Msa0826370:CDS 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG - chr5_3:66715204-66715223 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_3:66714057-66714076 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + chr5_3:66714568-66714587 Msa0826370:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - chr5_3:66714947-66714966 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + chr5_3:66714947-66714966 Msa0826370:CDS 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG - chr5_3:66715204-66715223 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+CGG + chr5_3:66715192-66715211 Msa0826370:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG - chr5_3:66715208-66715227 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+CGG + chr5_3:66715192-66715211 Msa0826370:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG - chr5_3:66715208-66715227 None:intergenic 60.0%
! GTCCGGGCTTGGTTGGTCCA+GGG - chr5_3:66715197-66715216 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG - chr5_3:66715198-66715217 None:intergenic 65.0%
! GTCCGGGCTTGGTTGGTCCA+GGG - chr5_3:66715197-66715216 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG - chr5_3:66715198-66715217 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 66713921 66715411 66713921 ID=Msa0826370;Name=Msa0826370
chr5_3 mRNA 66713921 66715411 66713921 ID=Msa0826370-mRNA-1;Parent=Msa0826370;Name=Msa0826370-mRNA-1;_AED=0.24;_eAED=0.24;_QI=73|1|1|1|1|1|3|172|312
chr5_3 exon 66713921 66714313 66713921 ID=Msa0826370-mRNA-1:exon:20963;Parent=Msa0826370-mRNA-1
chr5_3 exon 66714528 66714771 66714528 ID=Msa0826370-mRNA-1:exon:20964;Parent=Msa0826370-mRNA-1
chr5_3 exon 66714865 66715411 66714865 ID=Msa0826370-mRNA-1:exon:20965;Parent=Msa0826370-mRNA-1
chr5_3 five_prime_UTR 66713921 66713993 66713921 ID=Msa0826370-mRNA-1:five_prime_utr;Parent=Msa0826370-mRNA-1
chr5_3 CDS 66713994 66714313 66713994 ID=Msa0826370-mRNA-1:cds;Parent=Msa0826370-mRNA-1
chr5_3 CDS 66714528 66714771 66714528 ID=Msa0826370-mRNA-1:cds;Parent=Msa0826370-mRNA-1
chr5_3 CDS 66714865 66715239 66714865 ID=Msa0826370-mRNA-1:cds;Parent=Msa0826370-mRNA-1
chr5_3 three_prime_UTR 66715240 66715411 66715240 ID=Msa0826370-mRNA-1:three_prime_utr;Parent=Msa0826370-mRNA-1
Gene Sequence

>Msa0826370

ATGGATAGTGTTGAAATCCCAACAAAGGTTCTTACCAACACATCTAGTCAATTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCCTATGGTTCAGAACAAGCTCTTGGTGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAAATGAGCTTTTTGTTACTTCCAAACTTTGGGTTACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTACATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGTTATGATAAGGAAAGAATGAACCAAAATTTGTGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATTGCTCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCCGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0826370

MDSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTRNELFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFTFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLCIFDWSLTKEDHEKIAQIKQNRLIPGPTKPGLNDLYDD*