AlfalfaGEDB | Msa0946910

M. sativa cultivar zhongmu-4 / Msa0946910

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946910	XP_003612805.1	97.778	90	2	0	56	145	118	207	7.23e-54	182

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946910	sp\|Q9FVR6\|Y1222_ARATH	61.240	129	46	2	19	145	75	201	3.73e-46	154

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0670030	Msa0946910	0.802602	5.190269e-49	-8.615850e-47
Msa0850450	Msa0946910	0.808188	3.501851e-50	-8.615850e-47
Msa0946900	Msa0946910	0.851391	9.151575e-61	-8.615850e-47
Msa0946910	Msa0946980	0.972336	1.336458e-134	-8.615850e-47
Msa0946910	Msa0947040	0.858282	9.168315e-63	-8.615850e-47
Msa0946910	Msa0947080	0.908374	1.832409e-81	-8.615850e-47
Msa0946910	Msa0947100	0.912376	2.090110e-83	-8.615850e-47
Msa0946910	Msa0947180	0.836492	9.064227e-57	-8.615850e-47
Msa0946910	Msa0947230	0.936082	3.063214e-97	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946910	MtrunA17_Chr5g0410681	97.778	90	2	0	56	145	118	207	6.65e-58	182
Msa0946910	MtrunA17_Chr3g0136661	53.750	80	36	1	66	145	116	194	3.37e-21	87.0
Msa0946910	MtrunA17_Chr6g0452121	87.500	40	5	0	57	96	4	43	6.87e-19	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946910	AT1G32220.1	61.240	129	46	2	19	145	75	201	3.79e-47	154
Msa0946910	AT5G10730.1	49.367	79	39	1	66	144	117	194	2.44e-19	82.4
Msa0946910	AT5G15910.2	50.649	77	37	1	68	144	63	138	7.04e-18	77.4
Msa0946910	AT5G15910.1	50.649	77	37	1	68	144	104	179	8.95e-18	77.8

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Find 89 sgRNAs with CRISPR-Local

Find 720 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGGCCATGATGTTT+TGG	0.353953	6_3:+29220105	Msa0946910:three_prime_UTR
AACTGAGATCAATATGAATT+TGG	0.138307	6_3:-29219281	None:intergenic
AACTGGGACGAAGTACTTCC+TGG	0.372764	6_3:+29218664	Msa0946910:CDS
AAGGTAAAGACAGGAATAGA+AGG	0.505628	6_3:-29208542	None:intergenic
AAGGTCTGACAAAGGTTGGA+GGG	0.606437	6_3:+29208761	Msa0946910:CDS
AATAGAAGGCTGTAAGGCAG+AGG	0.568145	6_3:-29208528	None:intergenic
AATGAGTAAGATTAACGGCG+AGG	0.694649	6_3:+29218735	Msa0946910:CDS
AATGTCACCACAAAGGAGAG+AGG	0.667419	6_3:-29219620	None:intergenic
AATTCAGATTGGTACTCATT+TGG	0.387213	6_3:+29208345	Msa0946910:five_prime_UTR
AATTCTACTGCTAAATTGGT+CGG	0.542804	6_3:-29220270	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAGCTAAGCAAAATAAAC+AGG	+	chr6_3:29207774-29207793	Msa0946910:five_prime_UTR	30.0%
TTGAGCTAAGCAAAATAAAC+AGG	+	chr6_3:29207774-29207793	Msa0946910:five_prime_UTR	30.0%
ACATACTCATCAAATAGTGA+AGG	-	chr6_3:29207914-29207933	None:intergenic	30.0%
TTTACTAAAGCCGAAATTGT+TGG	+	chr6_3:29207965-29207984	Msa0946910:intron	30.0%
TGGATTCAAGAAATTTGGTT+TGG	-	chr6_3:29208073-29208092	None:intergenic	30.0%
CATGTACATTTAGAAATCTG+AGG	-	chr6_3:29208293-29208312	None:intergenic	30.0%
TCTTATGGAGAAATTCAGAT+TGG	+	chr6_3:29208334-29208353	Msa0946910:five_prime_UTR	30.0%
AATTCAGATTGGTACTCATT+TGG	+	chr6_3:29208345-29208364	Msa0946910:five_prime_UTR	30.0%
CCTGATCATAAATCAATAGA+GGG	-	chr6_3:29208450-29208469	None:intergenic	30.0%
TCCTGATCATAAATCAATAG+AGG	-	chr6_3:29208451-29208470	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	29207735	29220695	29207735	ID=Msa0946910;Name=Msa0946910
chr6_3	mRNA	29207735	29220695	29207735	ID=Msa0946910-mRNA-1;Parent=Msa0946910;Name=Msa0946910-mRNA-1;_AED=0.17;_eAED=0.17;_QI=224\|0.71\|0.87\|1\|0.42\|0.62\|8\|1022\|151
chr6_3	exon	29207735	29207824	29207735	ID=Msa0946910-mRNA-1:exon:7737;Parent=Msa0946910-mRNA-1
chr6_3	exon	29208331	29208390	29208331	ID=Msa0946910-mRNA-1:exon:7738;Parent=Msa0946910-mRNA-1
chr6_3	exon	29208507	29208585	29208507	ID=Msa0946910-mRNA-1:exon:7739;Parent=Msa0946910-mRNA-1
chr6_3	exon	29208732	29208802	29208732	ID=Msa0946910-mRNA-1:exon:7740;Parent=Msa0946910-mRNA-1
chr6_3	exon	29217713	29217805	29217713	ID=Msa0946910-mRNA-1:exon:7741;Parent=Msa0946910-mRNA-1
chr6_3	exon	29218647	29218793	29218647	ID=Msa0946910-mRNA-1:exon:7742;Parent=Msa0946910-mRNA-1
chr6_3	exon	29219275	29219718	29219275	ID=Msa0946910-mRNA-1:exon:7743;Parent=Msa0946910-mRNA-1
chr6_3	exon	29219978	29220695	29219978	ID=Msa0946910-mRNA-1:exon:7744;Parent=Msa0946910-mRNA-1
chr6_3	five_prime_UTR	29207735	29207824	29207735	ID=Msa0946910-mRNA-1:five_prime_utr;Parent=Msa0946910-mRNA-1
chr6_3	five_prime_UTR	29208331	29208390	29208331	ID=Msa0946910-mRNA-1:five_prime_utr;Parent=Msa0946910-mRNA-1
chr6_3	five_prime_UTR	29208507	29208580	29208507	ID=Msa0946910-mRNA-1:five_prime_utr;Parent=Msa0946910-mRNA-1
chr6_3	CDS	29208581	29208585	29208581	ID=Msa0946910-mRNA-1:cds;Parent=Msa0946910-mRNA-1
chr6_3	CDS	29208732	29208802	29208732	ID=Msa0946910-mRNA-1:cds;Parent=Msa0946910-mRNA-1
chr6_3	CDS	29217713	29217805	29217713	ID=Msa0946910-mRNA-1:cds;Parent=Msa0946910-mRNA-1
chr6_3	CDS	29218647	29218793	29218647	ID=Msa0946910-mRNA-1:cds;Parent=Msa0946910-mRNA-1
chr6_3	CDS	29219275	29219414	29219275	ID=Msa0946910-mRNA-1:cds;Parent=Msa0946910-mRNA-1
chr6_3	three_prime_UTR	29219415	29219718	29219415	ID=Msa0946910-mRNA-1:three_prime_utr;Parent=Msa0946910-mRNA-1
chr6_3	three_prime_UTR	29219978	29220695	29219978	ID=Msa0946910-mRNA-1:three_prime_utr;Parent=Msa0946910-mRNA-1

Gene Sequence

>Msa0946910

ATGGGTGTAGAAAGAGTGAATTTGCAGAGTATTGAAGGTCTGACAAAGGTTGGAGGGACTGTTATATGTGTTTCAGCAATTTTGGTTTTGAAGGAGGAATTGGAAAAATGCAGAAGTAAAAATTTTGTGCCAGTTTTGGAAGAGTTTATTCCTTTGAAGAAGAAATGTGGAGATGTTTTTTATGTAAACTGGGACGAAGTACTTCCTGGAGCTACTGCAGTTGTCTCAACCCTCGGAGGTTTTGGTAGCGAGGAACAAATGAGTAAGATTAACGGCGAGGCTAATGTTGTGGCTGTAAATGCTGCAAACGAATATGGAATTCCCAAATTCATATTGATCTCAGTTCATGACTATAACTTACCATCGTTTTTACTTTCATTGGGGTACTTCACAGGAAAAAGAAAAGCAGAATCTGAGGTTCTATCCAAATTCCCTATTCTTTCAGAATCTGAGTGA

Protein sequence

>Msa0946910

MGVERVNLQSIEGLTKVGGTVICVSAILVLKEELEKCRSKNFVPVLEEFIPLKKKCGDVFYVNWDEVLPGATAVVSTLGGFGSEEQMSKINGEANVVAVNAANEYGIPKFILISVHDYNLPSFLLSLGYFTGKRKAESEVLSKFPILSESE*