AlfalfaGEDB | Msa0946980

M. sativa cultivar zhongmu-4 / Msa0946980

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946980	sp\|Q9FVR6\|Y1222_ARATH	61.240	129	46	2	19	145	75	201	3.73e-46	154

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946980	G7KCB8	97.778	90	2	0	56	145	118	207	3.45e-54	182

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0815180	Msa0946980	0.802963	4.371431e-49	-8.615850e-47
Msa0946900	Msa0946980	0.861048	1.348273e-63	-8.615850e-47
Msa0946910	Msa0946980	0.972336	1.336458e-134	-8.615850e-47
Msa0946980	Msa0947040	0.852538	4.323935e-61	-8.615850e-47
Msa0946980	Msa0947080	0.907190	6.622270e-81	-8.615850e-47
Msa0946980	Msa0947100	0.913612	5.028794e-84	-8.615850e-47
Msa0946980	Msa0947180	0.827960	1.172287e-54	-8.615850e-47
Msa0946980	Msa0947230	0.928115	4.554340e-92	-8.615850e-47
Msa0946980	Msa1307070	0.804915	1.717266e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946980	MtrunA17_Chr5g0410681	97.778	90	2	0	56	145	118	207	6.65e-58	182
Msa0946980	MtrunA17_Chr3g0136661	53.750	80	36	1	66	145	116	194	3.37e-21	87.0
Msa0946980	MtrunA17_Chr6g0452121	87.500	40	5	0	57	96	4	43	6.87e-19	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946980	AT1G32220.1	61.240	129	46	2	19	145	75	201	3.79e-47	154
Msa0946980	AT5G10730.1	49.367	79	39	1	66	144	117	194	2.44e-19	82.4
Msa0946980	AT5G15910.2	50.649	77	37	1	68	144	63	138	7.04e-18	77.4
Msa0946980	AT5G15910.1	50.649	77	37	1	68	144	104	179	8.95e-18	77.8

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Find 89 sgRNAs with CRISPR-Local

Find 740 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGGCCATGATGTTT+TGG	0.353953	6_3:+29452957	Msa0946980:three_prime_UTR
AACTGAGATCAATATGAATT+TGG	0.138307	6_3:-29452133	None:intergenic
AACTGGGACGAAGTACTTCC+TGG	0.372764	6_3:+29451516	Msa0946980:CDS
AAGGTAAAGACAGGAATAGA+AGG	0.505628	6_3:-29441391	None:intergenic
AAGGTCTGACAAAGGTTGGA+GGG	0.606437	6_3:+29441610	Msa0946980:CDS
AATAGAAGGCTGTAAGGCAG+AGG	0.568145	6_3:-29441377	None:intergenic
AATGAGTAAGATTAACGGCG+AGG	0.694649	6_3:+29451587	Msa0946980:CDS
AATGTCACCACAAAGGAGAG+AGG	0.667419	6_3:-29452472	None:intergenic
AATTCAGATTGGTACTCATT+TGG	0.387213	6_3:+29441194	Msa0946980:five_prime_UTR
AATTCTACTGCTAAATTGGT+CGG	0.542804	6_3:-29453122	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAGCTAAGCAAAATAAAC+AGG	+	chr6_3:29440622-29440641	Msa0946980:five_prime_UTR	30.0%
ACATACTCATCAAATAGTGA+AGG	-	chr6_3:29440762-29440781	None:intergenic	30.0%
TTTACTAAAGCCGAAATTGT+TGG	+	chr6_3:29440813-29440832	Msa0946980:intron	30.0%
TGGATTCAAGAAATTTGGTT+TGG	-	chr6_3:29440921-29440940	None:intergenic	30.0%
CATGTACATTTAGAAATCTG+AGG	-	chr6_3:29441142-29441161	None:intergenic	30.0%
TCTTATGGAGAAATTCAGAT+TGG	+	chr6_3:29441183-29441202	Msa0946980:five_prime_UTR	30.0%
AATTCAGATTGGTACTCATT+TGG	+	chr6_3:29441194-29441213	Msa0946980:five_prime_UTR	30.0%
CCTGATCATAAATCAATAGA+GGG	-	chr6_3:29441299-29441318	None:intergenic	30.0%
TCCTGATCATAAATCAATAG+AGG	-	chr6_3:29441300-29441319	None:intergenic	30.0%
ACCATAAAGAAACAACAGTT+AGG	-	chr6_3:29441332-29441351	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	29440583	29453547	29440583	ID=Msa0946980;Name=Msa0946980
chr6_3	mRNA	29440583	29453547	29440583	ID=Msa0946980-mRNA-1;Parent=Msa0946980;Name=Msa0946980-mRNA-1;_AED=0.17;_eAED=0.17;_QI=224\|0.71\|0.87\|1\|0.42\|0.62\|8\|1022\|151
chr6_3	exon	29440583	29440672	29440583	ID=Msa0946980-mRNA-1:exon:7775;Parent=Msa0946980-mRNA-1
chr6_3	exon	29441180	29441239	29441180	ID=Msa0946980-mRNA-1:exon:7776;Parent=Msa0946980-mRNA-1
chr6_3	exon	29441356	29441434	29441356	ID=Msa0946980-mRNA-1:exon:7777;Parent=Msa0946980-mRNA-1
chr6_3	exon	29441581	29441651	29441581	ID=Msa0946980-mRNA-1:exon:7778;Parent=Msa0946980-mRNA-1
chr6_3	exon	29450565	29450657	29450565	ID=Msa0946980-mRNA-1:exon:7779;Parent=Msa0946980-mRNA-1
chr6_3	exon	29451499	29451645	29451499	ID=Msa0946980-mRNA-1:exon:7780;Parent=Msa0946980-mRNA-1
chr6_3	exon	29452127	29452570	29452127	ID=Msa0946980-mRNA-1:exon:7781;Parent=Msa0946980-mRNA-1
chr6_3	exon	29452830	29453547	29452830	ID=Msa0946980-mRNA-1:exon:7782;Parent=Msa0946980-mRNA-1
chr6_3	five_prime_UTR	29440583	29440672	29440583	ID=Msa0946980-mRNA-1:five_prime_utr;Parent=Msa0946980-mRNA-1
chr6_3	five_prime_UTR	29441180	29441239	29441180	ID=Msa0946980-mRNA-1:five_prime_utr;Parent=Msa0946980-mRNA-1
chr6_3	five_prime_UTR	29441356	29441429	29441356	ID=Msa0946980-mRNA-1:five_prime_utr;Parent=Msa0946980-mRNA-1
chr6_3	CDS	29441430	29441434	29441430	ID=Msa0946980-mRNA-1:cds;Parent=Msa0946980-mRNA-1
chr6_3	CDS	29441581	29441651	29441581	ID=Msa0946980-mRNA-1:cds;Parent=Msa0946980-mRNA-1
chr6_3	CDS	29450565	29450657	29450565	ID=Msa0946980-mRNA-1:cds;Parent=Msa0946980-mRNA-1
chr6_3	CDS	29451499	29451645	29451499	ID=Msa0946980-mRNA-1:cds;Parent=Msa0946980-mRNA-1
chr6_3	CDS	29452127	29452266	29452127	ID=Msa0946980-mRNA-1:cds;Parent=Msa0946980-mRNA-1
chr6_3	three_prime_UTR	29452267	29452570	29452267	ID=Msa0946980-mRNA-1:three_prime_utr;Parent=Msa0946980-mRNA-1
chr6_3	three_prime_UTR	29452830	29453547	29452830	ID=Msa0946980-mRNA-1:three_prime_utr;Parent=Msa0946980-mRNA-1

Gene Sequence

>Msa0946980

ATGGGTGTAGAAAGAGTGAATTTGCAGAGTATTGAAGGTCTGACAAAGGTTGGAGGGACTGTTATATGTGTTTCAGCAATTTTGGTTTTGAAGGAGGAATTGGAAAAATGCAGAAGTAAAAATTTTGTGCCAGTTTTGGAAGAGTTTATTCCTTTGAAGAAGAAATGTGGAGATGTTTTTTATGTAAACTGGGACGAAGTACTTCCTGGAGCTACTGCAGTTGTCTCAACCCTCGGAGGTTTTGGTAGCGAGGAACAAATGAGTAAGATTAACGGCGAGGCTAATGTTGTGGCTGTAAATGCTGCAAACGAATATGGAATTCCCAAATTCATATTGATCTCAGTTCATGACTATAACTTACCATCGTTTTTACTTTCATTGGGGTACTTCACAGGAAAAAGAAAAGCAGAATCTGAGGTTCTATCCAAATTCCCTATTCTTTCAGAATCTGAGTGA

Protein sequence

>Msa0946980

MGVERVNLQSIEGLTKVGGTVICVSAILVLKEELEKCRSKNFVPVLEEFIPLKKKCGDVFYVNWDEVLPGATAVVSTLGGFGSEEQMSKINGEANVVAVNAANEYGIPKFILISVHDYNLPSFLLSLGYFTGKRKAESEVLSKFPILSESE*